FN2947-S Chr1 14351763 14351763 0 0 Insertion 3 intron_variant HET FN2947-S Chr1 16427628 16427646 0 0 Deletion 18 CODON_CHANGE_PLUS_CODON_DELETION HET LOC_Os01g29320 retrotransposon protein, putative, unclassified, expressed FN2947-S Chr1 18477918 18477936 0 0 Deletion 18 upstream_gene_variant HET FN2947-S Chr1 23304124 23304124 0 0 Insertion 1 upstream_gene_variant HET FN2947-S Chr1 29212171 29212172 0 0 Deletion 1 INTERGENIC HOMO FN2947-S Chr1 30447645 30447659 0 0 Deletion 14 FRAME_SHIFT HOMO LOC_Os01g52970 OsFBX22 - F-box domain containing protein, expressed FN2947-S Chr1 3744876 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2947-S Chr10 21785205 21785216 0 0 Deletion 11 INTERGENIC HET FN2947-S Chr10 4052874 4052876 0 0 Deletion 2 upstream_gene_variant HET FN2947-S Chr11 10659256 Chr6 15618050 0 Translocation 0 FN2947-S Chr11 11938498 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2947-S Chr11 14707325 C-T 0 0 Single Base Substitution 0 INTRON HET FN2947-S Chr11 18222863 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2947-S Chr11 24140215 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2947-S Chr11 25455408 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os11g42250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2947-S Chr12 13352820 Chr1 18686327 0 Translocation 0 FN2947-S Chr12 14064739 14064741 0 0 Deletion 2 INTERGENIC HET FN2947-S Chr12 14068105 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2947-S Chr12 195570 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2947-S Chr12 27236984 27236985 0 0 Deletion 1 upstream_gene_variant HET FN2947-S Chr12 5011736 5011829 0 0 Deletion 93 upstream_gene_variant HET FN2947-S Chr2 20429320 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g34160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2947-S Chr2 22702097 22702099 0 0 Deletion 2 upstream_gene_variant HET FN2947-S Chr2 30193443 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2947-S Chr2 31352121 31517552 0 0 Inversion 165431 FN2947-S Chr2 31352131 31517659 0 0 Inversion 165528 LOC_Os02g51440 laccase precursor protein, putative, expressed FN2947-S Chr2 31773576 T-C 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN2947-S Chr2 32750792 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g53530 ZOS2-17 - C2H2 zinc finger protein, expressed FN2947-S Chr2 34475701 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2947-S Chr2 4083385 4083389 0 0 Deletion 4 FRAME_SHIFT HET LOC_Os02g07800 transcription factor, putative, expressed FN2947-S Chr2 68919 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2947-S Chr2 8123449 8123457 0 0 Deletion 8 downstream_gene_variant HET FN2947-S Chr2 9242777 9242779 0 0 Deletion 2 upstream_gene_variant HET FN2947-S Chr3 11651336 A-G 0 0 Single Base Substitution 0 UTR_5_PRIME HOMO FN2947-S Chr3 12666729 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2947-S Chr3 15300188 15300198 0 0 Deletion 10 INTERGENIC HET FN2947-S Chr3 19977899 19977910 0 0 Deletion 11 INTERGENIC HOMO FN2947-S Chr3 26098372 26196038 0 0 Inversion 97666 FN2947-S Chr3 26098376 26196037 0 0 Inversion 97661 FN2947-S Chr3 26463488 27191784 0 0 Inversion 728296 FN2947-S Chr3 26463498 27191796 0 0 Inversion 728298 FN2947-S Chr3 31180263 31180287 0 0 Deletion 24 INTERGENIC HET FN2947-S Chr3 7992392 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN2947-S Chr3 9431456 9431456 0 0 Insertion 12 upstream_gene_variant HET FN2947-S Chr4 20942518 A-C 0 0 Single Base Substitution 0 INTRON HOMO FN2947-S Chr4 22379339 22379339 0 0 Insertion 125 3_prime_UTR_variant HET FN2947-S Chr4 22612001 22612010 0 0 Deletion 9 UTR_5_PRIME HOMO FN2947-S Chr4 25430261 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2947-S Chr4 26083643 26083644 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os04g44000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2947-S Chr4 26611044 26611044 0 0 Insertion 1 INTERGENIC HET FN2947-S Chr4 33511067 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2947-S Chr4 7481375 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2947-S Chr5 10636001 10674000 0 0 Deletion 37999 LOC_Os05g18410 retrotransposon protein, putative, Ty1-copia subclass FN2947-S Chr5 10636001 10674000 0 0 Deletion 37999 LOC_Os05g18419 retrotransposon, putative, centromere-specific FN2947-S Chr5 10636001 10674000 0 0 Deletion 37999 LOC_Os05g18446 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2947-S Chr5 10636001 10674000 0 0 Deletion 37999 LOC_Os05g18470 CRAL/TRIO domain containing protein, expressed FN2947-S Chr5 10636001 10674000 0 0 Deletion 37999 LOC_Os05g18900 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2947-S Chr5 17136987 17136991 0 0 Deletion 4 INTERGENIC HOMO FN2947-S Chr5 20914055 G-A 0 0 Single Base Substitution 0 INTRON HET FN2947-S Chr5 22291931 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2947-S Chr6 11658603 11658603 0 0 Insertion 2 upstream_gene_variant HET FN2947-S Chr6 19365850 19365850 0 0 Insertion 1 upstream_gene_variant HET FN2947-S Chr6 21780344 21780365 0 0 Deletion 21 downstream_gene_variant HET FN2947-S Chr6 24778215 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2947-S Chr7 1449528 G-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2947-S Chr7 15934295 15934296 0 0 Deletion 1 INTERGENIC HOMO FN2947-S Chr7 16536956 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2947-S Chr7 18139912 18139914 0 0 Deletion 2 FRAME_SHIFT HET LOC_Os07g30650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2947-S Chr7 19059338 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN2947-S Chr7 19491521 19491532 0 0 Deletion 11 INTERGENIC HOMO FN2947-S Chr7 20469627 20469631 0 0 Deletion 4 INTERGENIC HET FN2947-S Chr7 27275496 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g45680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2947-S Chr8 10030938 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2947-S Chr8 10539215 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2947-S Chr8 10890453 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2947-S Chr8 11243534 11243534 0 0 Insertion 3 INTERGENIC HET FN2947-S Chr8 15762409 15762416 0 0 Deletion 7 upstream_gene_variant HET FN2947-S Chr8 16209412 16586979 0 0 Inversion 377567 FN2947-S Chr8 16209419 16586980 0 0 Inversion 377561 FN2947-S Chr9 7115595 7115692 0 0 Deletion 97 upstream_gene_variant HET