FN2958-S Chr1 13350422 13350422 0 0 Insertion 21 upstream_gene_variant HET FN2958-S Chr1 14171367 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2958-S Chr1 14437846 G-T 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN2958-S Chr1 18210515 18210516 0 0 Deletion 1 downstream_gene_variant HET FN2958-S Chr1 24644470 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2958-S Chr1 27468427 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2958-S Chr1 31175418 31175423 0 0 Deletion 5 downstream_gene_variant HET FN2958-S Chr1 33623573 33623573 0 0 Insertion 1 upstream_gene_variant HET FN2958-S Chr1 3441735 3441761 0 0 Deletion 26 upstream_gene_variant HET FN2958-S Chr1 40289276 40289277 0 0 Deletion 1 upstream_gene_variant HET FN2958-S Chr1 43143213 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2958-S Chr1 5688004 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2958-S Chr10 14085074 14085074 0 0 Insertion 1 upstream_gene_variant HET FN2958-S Chr10 1651292 1651293 0 0 Deletion 1 upstream_gene_variant HET FN2958-S Chr10 18539290 18539294 0 0 Deletion 4 FRAME_SHIFT HET LOC_Os10g34710 myosin-2 heavy chain, non muscle, putative, expressed FN2958-S Chr10 5134468 5134468 0 0 Insertion 1 3_prime_UTR_variant HET FN2958-S Chr10 7977844 Chr1 17134626 0 Translocation 0 FN2958-S Chr10 9015008 9015009 0 0 Deletion 1 upstream_gene_variant HET FN2958-S Chr10 9015152 9015153 0 0 Deletion 1 upstream_gene_variant HET FN2958-S Chr11 12082918 12082918 0 0 Insertion 108 intergenic_region HET FN2958-S Chr11 15326088 15326089 0 0 Deletion 1 upstream_gene_variant HET FN2958-S Chr11 18139043 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2958-S Chr11 27827270 Chr6 25897961 0 Translocation 0 FN2958-S Chr11 7587452 G-A 0 0 Single Base Substitution 0 START_GAINED HOMO FN2958-S Chr12 13361956 13361956 0 0 Insertion 4 intron_variant HET FN2958-S Chr12 14078253 Chr8 10124019 0 Translocation 0 LOC_Os08g16540 retrotransposon protein, putative, unclassified, expressed FN2958-S Chr12 15228442 15228442 0 0 Insertion 14 frameshift_variant HET LOC_Os12g26140 retrotransposon protein, putative, unclassified, expressed FN2958-S Chr12 17132980 17132981 0 0 Deletion 1 downstream_gene_variant HET FN2958-S Chr12 2005036 Chr11 11393167 0 Translocation 0 FN2958-S Chr12 20277984 20277984 0 0 Insertion 5 upstream_gene_variant HET FN2958-S Chr12 2085792 2085793 0 0 Deletion 1 upstream_gene_variant HET FN2958-S Chr12 24331808 24331928 0 0 Deletion 120 upstream_gene_variant HET FN2958-S Chr12 6994745 6994745 0 0 Insertion 1 upstream_gene_variant HET FN2958-S Chr12 8362675 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2958-S Chr2 13752849 13753004 0 0 Deletion 155 intergenic_region HET FN2958-S Chr2 20437789 G-T 0 0 Single Base Substitution 0 STOP_GAINED HOMO LOC_Os02g34170 transposon protein, putative, unclassified, expressed FN2958-S Chr2 20437790 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g34170 transposon protein, putative, unclassified, expressed FN2958-S Chr2 22933696 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2958-S Chr2 233169 233170 0 0 Deletion 1 frameshift_variant HET LOC_Os02g01390 retrotransposon protein, putative, unclassified, expressed FN2958-S Chr2 23340124 23340125 0 0 Deletion 1 upstream_gene_variant HET FN2958-S Chr2 24845122 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2958-S Chr2 30254681 30254682 0 0 Deletion 1 frameshift_variant HET LOC_Os02g49500 retrotransposon protein, putative, unclassified FN2958-S Chr2 30442183 30446256 0 0 Inversion 4073 FN2958-S Chr2 30442189 30446261 0 0 Inversion 4072 FN2958-S Chr2 30850536 30850539 0 0 Deletion 3 upstream_gene_variant HET FN2958-S Chr2 32760531 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2958-S Chr2 461066 461080 0 0 Deletion 14 FRAME_SHIFT HOMO LOC_Os02g01840 retrotransposon protein, putative, unclassified, expressed FN2958-S Chr2 475052 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2958-S Chr2 6351001 6364000 0 0 Deletion 12999 FN2958-S Chr2 6790359 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2958-S Chr2 6893754 6893755 0 0 Deletion 1 downstream_gene_variant HET FN2958-S Chr3 12574046 12574047 0 0 Deletion 1 downstream_gene_variant HET FN2958-S Chr3 15785150 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2958-S Chr3 16859312 16859313 0 0 Deletion 1 upstream_gene_variant HET FN2958-S Chr3 20024833 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2958-S Chr3 2624617 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g05360 transposon protein, putative, unclassified, expressed FN2958-S Chr3 4051219 4051220 0 0 Deletion 1 intron_variant HET FN2958-S Chr4 12074001 12086000 0 0 Deletion 11999 LOC_Os04g21380 retrotransposon protein, putative, unclassified, expressed FN2958-S Chr4 12074001 12086000 0 0 Deletion 11999 LOC_Os04g21610 expressed protein FN2958-S Chr4 16920537 16920537 0 0 Insertion 1 downstream_gene_variant HET FN2958-S Chr4 18325807 18325808 0 0 Deletion 1 upstream_gene_variant HET FN2958-S Chr4 2098001 2115000 0 0 Deletion 16999 LOC_Os04g04420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2958-S Chr4 2098001 2115000 0 0 Deletion 16999 LOC_Os04g04430 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2958-S Chr4 2098001 2115000 0 0 Deletion 16999 LOC_Os04g04440 retrotransposon protein, putative, unclassified FN2958-S Chr4 2098001 2115000 0 0 Deletion 16999 LOC_Os04g04940 retrotransposon protein, putative, unclassified, expressed FN2958-S Chr4 23665718 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g39710 retrotransposon protein, putative, unclassified, expressed FN2958-S Chr4 29551237 29551237 0 0 Insertion 60 downstream_gene_variant HET FN2958-S Chr4 3005728 3005728 0 0 Insertion 1 upstream_gene_variant HET FN2958-S Chr4 31709157 31709158 0 0 Deletion 1 intergenic_region HET FN2958-S Chr4 32262548 32262581 0 0 Deletion 33 splice_region_variant&intron_variant HET FN2958-S Chr4 33111949 Chr2 8784288 0 Translocation 0 LOC_Os04g55620 receptor kinase, putative, expressed FN2958-S Chr4 33393892 33393893 0 0 Deletion 1 INTERGENIC HET FN2958-S Chr4 5456370 5456370 0 0 Insertion 1 upstream_gene_variant HET FN2958-S Chr4 7997173 7997175 0 0 Deletion 2 upstream_gene_variant HET FN2958-S Chr4 9553067 9553067 0 0 Insertion 1 intron_variant HET FN2958-S Chr5 10058985 10058986 0 0 Deletion 1 upstream_gene_variant HET FN2958-S Chr5 17562409 17562439 0 0 Deletion 30 upstream_gene_variant HET FN2958-S Chr5 18535639 18535645 0 0 Deletion 6 CODON_DELETION HOMO LOC_Os05g31830 aspartyl protease family protein, putative, expressed FN2958-S Chr5 2689821 2689821 0 0 Insertion 1 upstream_gene_variant HET FN2958-S Chr5 27602601 27602616 0 0 Deletion 15 splice_donor_variant&splice_region_variant&5_prime_UTR_variant&intron_variant HET LOC_Os05g48150 transposon protein, putative, unclassified, expressed FN2958-S Chr5 27739659 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2958-S Chr5 7898988 7898990 0 0 Deletion 2 downstream_gene_variant HET FN2958-S Chr6 10800796 Chr4 16769161 0 Translocation 0 FN2958-S Chr6 13470604 13470604 0 0 Insertion 5 upstream_gene_variant HET FN2958-S Chr6 13779872 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2958-S Chr6 17171382 17171418 0 0 Deletion 36 intergenic_region HET FN2958-S Chr6 21413656 21413656 0 0 Insertion 25 downstream_gene_variant HET FN2958-S Chr6 7727540 7727546 0 0 Deletion 6 INTERGENIC HOMO FN2958-S Chr7 12148653 12148654 0 0 Deletion 1 intergenic_region HET FN2958-S Chr7 16461257 16461265 0 0 Deletion 8 INTERGENIC HET FN2958-S Chr7 21249680 21249680 0 0 Insertion 2 upstream_gene_variant HET FN2958-S Chr7 27253455 27253455 0 0 Insertion 1 upstream_gene_variant HET FN2958-S Chr7 28079204 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN2958-S Chr7 2867141 2867148 0 0 Deletion 7 upstream_gene_variant HET FN2958-S Chr7 29352072 29352087 0 0 Deletion 15 INTERGENIC HOMO FN2958-S Chr7 4217384 4217392 0 0 Deletion 8 INTERGENIC HOMO FN2958-S Chr7 5051356 5051356 0 0 Insertion 1 intergenic_region HET FN2958-S Chr7 9681973 9681976 0 0 Deletion 3 upstream_gene_variant HET FN2958-S Chr8 12604118 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2958-S Chr8 13869200 13869200 0 0 Insertion 1 upstream_gene_variant HET FN2958-S Chr8 16212030 16212030 0 0 Insertion 2 INTERGENIC HET FN2958-S Chr8 16462824 16462824 0 0 Insertion 22 upstream_gene_variant HET FN2958-S Chr8 18060585 18060585 0 0 Insertion 4 downstream_gene_variant HET FN2958-S Chr8 19481080 19481080 0 0 Insertion 30 intergenic_region HET FN2958-S Chr8 20135631 Chr1 2999830 0 Translocation 0 FN2958-S Chr8 2048230 Chr1 293034 0 Translocation 0 LOC_Os01g01580 expressed protein FN2958-S Chr8 27332220 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2958-S Chr8 5029213 5029213 0 0 Insertion 5 upstream_gene_variant HET FN2958-S Chr8 6443606 6443634 0 0 Deletion 28 intron_variant HET FN2958-S Chr8 7313746 7313746 0 0 Insertion 1 downstream_gene_variant HET FN2958-S Chr8 734813 C-G 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2958-S Chr8 9579987 9579988 0 0 Deletion 1 intergenic_region HET FN2958-S Chr8 9651378 9651380 0 0 Deletion 2 frameshift_variant HET LOC_Os08g15870 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2958-S Chr9 10600776 10600776 0 0 Insertion 4 downstream_gene_variant HET FN2958-S Chr9 13454051 13454051 0 0 Insertion 1 upstream_gene_variant HET FN2958-S Chr9 2239466 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g04240 retrotransposon protein, putative, unclassified, expressed FN2958-S Chr9 2829203 2829203 0 0 Insertion 1 intergenic_region HET FN2958-S Chr9 3285419 3285420 0 0 Deletion 1 upstream_gene_variant HET FN2958-S Chr9 5496088 5496088 0 0 Insertion 1 upstream_gene_variant HET