FN2967-S Chr1 10076936 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2967-S Chr1 14521820 14521825 0 0 Deletion 5 INTERGENIC HET FN2967-S Chr1 14526889 14526894 0 0 Deletion 5 INTRON HOMO FN2967-S Chr1 16892124 16892124 0 0 Insertion 1 downstream_gene_variant HET FN2967-S Chr1 19048274 19049418 0 0 Inversion 1144 FN2967-S Chr1 34060853 34060853 0 0 Insertion 1 upstream_gene_variant HET FN2967-S Chr1 36788746 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2967-S Chr10 11440229 Chr3 13483592 0 Translocation 0 FN2967-S Chr10 2904602 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2967-S Chr10 3866407 Chr7 9520237 0 Translocation 0 FN2967-S Chr10 6538743 6538744 0 0 Deletion 1 upstream_gene_variant HET FN2967-S Chr11 11660550 11660943 0 0 Inversion 393 FN2967-S Chr11 12867001 12923000 0 0 Deletion 55999 LOC_Os11g22430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2967-S Chr11 12867001 12923000 0 0 Deletion 55999 LOC_Os11g22440 retrotransposon, putative, centromere-specific, expressed FN2967-S Chr11 12867001 12923000 0 0 Deletion 55999 LOC_Os11g22449 expressed protein FN2967-S Chr11 12867001 12923000 0 0 Deletion 55999 LOC_Os11g22460 expressed protein FN2967-S Chr11 12867001 12923000 0 0 Deletion 55999 LOC_Os11g22470 retrotransposon, putative, centromere-specific FN2967-S Chr11 12867001 12923000 0 0 Deletion 55999 LOC_Os11g22480 retrotransposon, putative, centromere-specific, expressed FN2967-S Chr11 12867001 12923000 0 0 Deletion 55999 LOC_Os11g22500 retrotransposon, putative, centromere-specific, expressed FN2967-S Chr11 15088170 Chr2 21674525 0 Translocation 0 FN2967-S Chr11 15949078 Chr7 18864237 0 Translocation 0 FN2967-S Chr11 17802184 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2967-S Chr11 22921246 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2967-S Chr11 4272682 Chr4 4022147 0 Translocation 0 FN2967-S Chr11 4497756 4497756 0 0 Insertion 91 upstream_gene_variant HET FN2967-S Chr11 7481473 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2967-S Chr12 22195000 22195001 0 0 Deletion 1 upstream_gene_variant HET FN2967-S Chr12 514165 514165 0 0 Insertion 7 INTERGENIC HET FN2967-S Chr12 8459840 8459840 0 0 Insertion 2 INTERGENIC HET FN2967-S Chr2 16029001 16065000 0 0 Deletion 35999 LOC_Os02g27250 expressed protein FN2967-S Chr2 16029001 16065000 0 0 Deletion 35999 LOC_Os02g27260 hypothetical protein FN2967-S Chr2 16029001 16065000 0 0 Deletion 35999 LOC_Os02g27270 retrotransposon protein, putative, unclassified, expressed FN2967-S Chr2 16029001 16065000 0 0 Deletion 35999 LOC_Os02g27540 NB-ARC domain containing protein, expressed FN2967-S Chr2 19778409 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g33280 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2967-S Chr2 6314752 6314753 0 0 Deletion 1 INTERGENIC HOMO FN2967-S Chr2 9662114 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2967-S Chr2 9662851 9662854 0 0 Deletion 3 INTERGENIC HET FN2967-S Chr3 22083663 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g39690 cytochrome P450, putative, expressed FN2967-S Chr3 23173015 23173018 0 0 Deletion 3 upstream_gene_variant HET FN2967-S Chr3 23506266 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2967-S Chr3 24247323 A-T 0 0 Single Base Substitution 0 INTRON HET FN2967-S Chr3 24247327 T-G 0 0 Single Base Substitution 0 INTRON HET FN2967-S Chr3 30424615 30424616 0 0 Deletion 1 INTRON HET FN2967-S Chr3 34053907 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2967-S Chr3 34053908 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2967-S Chr3 8279046 8279046 0 0 Insertion 1 upstream_gene_variant HET FN2967-S Chr4 10892333 10892334 0 0 Deletion 1 frameshift_variant HET LOC_Os04g19570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2967-S Chr4 12358677 12358679 0 0 Deletion 2 INTERGENIC HET FN2967-S Chr4 12422827 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2967-S Chr4 13589818 Chr1 41115853 0 Translocation 0 FN2967-S Chr4 15267460 15267460 0 0 Insertion 1 upstream_gene_variant HET FN2967-S Chr4 20421936 20421942 0 0 Deletion 6 upstream_gene_variant HET FN2967-S Chr4 21688311 21688311 0 0 Insertion 9 INTERGENIC HOMO FN2967-S Chr4 21859745 21859745 0 0 Insertion 1 frameshift_variant HET LOC_Os04g35870 retrotransposon protein, putative, unclassified, expressed FN2967-S Chr4 25266320 25266321 0 0 Deletion 1 upstream_gene_variant HET FN2967-S Chr4 27435882 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2967-S Chr4 31706754 31706757 0 0 Deletion 3 downstream_gene_variant HET FN2967-S Chr4 3192521 3192521 0 0 Insertion 1 upstream_gene_variant HET FN2967-S Chr4 32858778 32858784 0 0 Deletion 6 CODON_CHANGE_PLUS_CODON_DELETION HET LOC_Os04g55260 thiamine-repressible mitochondrial transport protein THI74, putative, expressed FN2967-S Chr4 5410428 5410527 0 0 Deletion 99 intergenic_region HET FN2967-S Chr5 11478897 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2967-S Chr5 12293147 12293147 0 0 Insertion 1 upstream_gene_variant HET FN2967-S Chr5 12760901 12760911 0 0 Deletion 10 upstream_gene_variant HET FN2967-S Chr5 12964801 12964804 0 0 Deletion 3 upstream_gene_variant HET FN2967-S Chr5 13342957 13342957 0 0 Insertion 1 downstream_gene_variant HET FN2967-S Chr5 17878543 17878543 0 0 Insertion 75 downstream_gene_variant HET FN2967-S Chr5 29927679 29927679 0 0 Insertion 1 intergenic_region HET FN2967-S Chr5 3657891 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN2967-S Chr5 8545829 8545829 0 0 Insertion 1 intergenic_region HET FN2967-S Chr5 8736477 8736477 0 0 Insertion 1 upstream_gene_variant HET FN2967-S Chr6 17516062 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2967-S Chr6 18659093 18659113 0 0 Deletion 20 upstream_gene_variant HET FN2967-S Chr6 21044696 21044698 0 0 Deletion 2 INTERGENIC HET FN2967-S Chr6 23468519 C-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2967-S Chr6 2488992 2488998 0 0 Deletion 6 intron_variant HET FN2967-S Chr6 29548862 29548863 0 0 Deletion 1 upstream_gene_variant HET FN2967-S Chr7 1308316 1308316 0 0 Insertion 18 upstream_gene_variant HET FN2967-S Chr7 16671841 16671841 0 0 Insertion 2 upstream_gene_variant HET FN2967-S Chr7 19090824 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2967-S Chr7 23031652 23031655 0 0 Deletion 3 upstream_gene_variant HET FN2967-S Chr7 26451175 26451198 0 0 Deletion 23 INTERGENIC HET FN2967-S Chr7 26451254 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2967-S Chr7 6536050 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2967-S Chr8 10342622 10342642 0 0 Deletion 20 INTERGENIC HET FN2967-S Chr8 16259313 16259313 0 0 Insertion 1 upstream_gene_variant HET FN2967-S Chr8 18790086 18790086 0 0 Insertion 1 intergenic_region HET FN2967-S Chr8 21099257 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2967-S Chr8 27378378 Chr6 10369650 0 Translocation 0 FN2967-S Chr8 27629018 27629019 0 0 Deletion 1 upstream_gene_variant HET FN2967-S Chr8 28029920 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g44570 retrotransposon protein, putative, unclassified, expressed FN2967-S Chr8 6539729 C-T 0 0 Single Base Substitution 0 INTRON HET FN2967-S Chr8 7022730 7022731 0 0 Deletion 1 intron_variant HET FN2967-S Chr8 7527214 7527215 0 0 Deletion 1 frameshift_variant HET LOC_Os08g12700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2967-S Chr8 9997009 10345377 0 0 Inversion 348368 FN2967-S Chr9 10011417 10011417 0 0 Insertion 1 intron_variant HET FN2967-S Chr9 13327557 13327563 0 0 Deletion 6 INTERGENIC HET FN2967-S Chr9 6308330 6308331 0 0 Deletion 1 frameshift_variant HET LOC_Os09g11360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2967-S Chr9 759192 Chr1 8511534 0 Translocation 0 LOC_Os01g15180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2967-S Chr9 759192 Chr1 8511534 0 Translocation 0 LOC_Os09g02070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed