FN2968-S Chr1 11018735 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2968-S Chr1 12473427 12473431 0 0 Deletion 4 upstream_gene_variant HET FN2968-S Chr1 1527992 1528082 0 0 Deletion 90 intergenic_region HET FN2968-S Chr1 16657119 16657121 0 0 Deletion 2 INTERGENIC HET FN2968-S Chr1 34239790 34239791 0 0 Deletion 1 upstream_gene_variant HET FN2968-S Chr10 13314422 13314435 0 0 Deletion 13 upstream_gene_variant HET FN2968-S Chr10 15482047 15482047 0 0 Insertion 2 upstream_gene_variant HET FN2968-S Chr10 16211972 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2968-S Chr10 17062669 17062670 0 0 Deletion 1 upstream_gene_variant HET FN2968-S Chr10 19218323 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2968-S Chr10 3240263 C-T 0 0 Single Base Substitution 0 INTRON HET FN2968-S Chr10 4473759 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2968-S Chr10 9175607 Chr3 22377469 0 Translocation 0 FN2968-S Chr10 9175612 Chr3 22377049 0 Translocation 0 FN2968-S Chr11 11221807 Chr2 35243787 0 Translocation 0 LOC_Os02g57520 DNA binding protein, putative, expressed FN2968-S Chr11 11222437 11222439 0 0 Deletion 2 INTRON HET FN2968-S Chr11 14820696 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2968-S Chr11 15096452 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2968-S Chr11 15646001 15693000 0 0 Deletion 46999 LOC_Os11g27210 retrotransposon protein, putative, unclassified, expressed FN2968-S Chr11 15646001 15693000 0 0 Deletion 46999 LOC_Os11g27220 hypothetical protein FN2968-S Chr11 15646001 15693000 0 0 Deletion 46999 LOC_Os11g27240 pentatricopeptide repeat domain containing protein, putative, expressed FN2968-S Chr11 15646001 15693000 0 0 Deletion 46999 LOC_Os11g27250 expressed protein FN2968-S Chr11 15646001 15693000 0 0 Deletion 46999 LOC_Os11g27264 OsSCP60 - Putative Serine Carboxypeptidase homologue, expressed FN2968-S Chr11 15646001 15693000 0 0 Deletion 46999 LOC_Os11g27740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2968-S Chr11 15770251 15770299 0 0 Deletion 48 upstream_gene_variant HET FN2968-S Chr11 23404412 Chr2 35266784 0 Translocation 0 LOC_Os11g39310 NB-ARC domain containing protein, expressed FN2968-S Chr11 23404417 Chr3 34653225 0 Translocation 0 LOC_Os11g39310 NB-ARC domain containing protein, expressed FN2968-S Chr11 23404730 Chr3 34653219 0 Translocation 0 LOC_Os11g39310 NB-ARC domain containing protein, expressed FN2968-S Chr12 16443505 16443507 0 0 Deletion 2 upstream_gene_variant HET FN2968-S Chr12 18487858 Chr11 18175911 0 Translocation 0 FN2968-S Chr12 20737222 20737222 0 0 Insertion 1 downstream_gene_variant HET FN2968-S Chr12 22477819 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os12g36690 mla1, putative, expressed FN2968-S Chr12 22477820 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2968-S Chr12 25500420 25500420 0 0 Insertion 1 upstream_gene_variant HET FN2968-S Chr12 4419501 4419512 0 0 Deletion 11 upstream_gene_variant HET FN2968-S Chr12 5447822 5447823 0 0 Deletion 1 upstream_gene_variant HET FN2968-S Chr12 7410190 T-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2968-S Chr12 9191945 9191945 0 0 Insertion 1 upstream_gene_variant HET FN2968-S Chr2 11261001 11282000 0 0 Deletion 20999 LOC_Os02g19280 retrotransposon protein, putative, unclassified, expressed FN2968-S Chr2 11261001 11282000 0 0 Deletion 20999 LOC_Os02g19290 expressed protein FN2968-S Chr2 11261001 11282000 0 0 Deletion 20999 LOC_Os02g19300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2968-S Chr2 15267660 15267660 0 0 Insertion 2 intron_variant HET FN2968-S Chr2 18695949 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2968-S Chr2 19632397 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2968-S Chr2 20036548 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2968-S Chr2 21185472 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2968-S Chr2 22286518 22286518 0 0 Insertion 2 INTERGENIC HET FN2968-S Chr2 30163860 30163870 0 0 Deletion 10 INTERGENIC HOMO FN2968-S Chr2 35270001 35284000 0 0 Deletion 13999 LOC_Os02g57590 rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed FN2968-S Chr2 35270001 35284000 0 0 Deletion 13999 LOC_Os02g57600 expressed protein FN2968-S Chr2 35270001 35284000 0 0 Deletion 13999 LOC_Os02g57610 expressed protein FN2968-S Chr2 35270001 35284000 0 0 Deletion 13999 LOC_Os02g58770 retrotransposon protein, putative, unclassified, expressed FN2968-S Chr2 9139264 9139264 0 0 Insertion 1 frameshift_variant HET LOC_Os02g16060 RGA-1, putative, expressed FN2968-S Chr3 11687381 11687381 0 0 Insertion 34 upstream_gene_variant HET FN2968-S Chr3 13447888 13447923 0 0 Deletion 35 FRAME_SHIFT HET LOC_Os03g23230 retrotransposon protein, putative, unclassified FN2968-S Chr3 17541647 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2968-S Chr3 20310418 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2968-S Chr3 20310419 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2968-S Chr3 28478290 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN2968-S Chr3 35851135 C-T 0 0 Single Base Substitution 0 INTRON HET FN2968-S Chr3 7498512 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os03g13830 pentatricopeptide, putative, expressed FN2968-S Chr3 8952516 8952516 0 0 Insertion 2 INTERGENIC HET FN2968-S Chr4 1058037 1058037 0 0 Insertion 1 downstream_gene_variant HET FN2968-S Chr4 11231489 Chr3 4244405 0 Translocation 0 FN2968-S Chr4 2655878 2655878 0 0 Insertion 3 upstream_gene_variant HET FN2968-S Chr4 5293511 5293512 0 0 Deletion 1 intron_variant HET FN2968-S Chr4 7655009 7655011 0 0 Deletion 2 downstream_gene_variant HET FN2968-S Chr4 8909004 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g16400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2968-S Chr5 13040001 13072000 0 0 Deletion 31999 LOC_Os05g22920 digestive organ expansion factor, putative, expressed FN2968-S Chr5 13040001 13072000 0 0 Deletion 31999 LOC_Os05g22930 CAAX amino terminal protease family protein, putative, expressed FN2968-S Chr5 13040001 13072000 0 0 Deletion 31999 LOC_Os05g22940 acetyl-CoA carboxylase, putative, expressed FN2968-S Chr5 15397960 15397961 0 0 Deletion 1 upstream_gene_variant HET FN2968-S Chr5 22883234 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2968-S Chr5 27816043 27816071 0 0 Deletion 28 upstream_gene_variant HET FN2968-S Chr5 9717001 9743000 0 0 Deletion 25999 LOC_Os05g17040 retrotransposon protein, putative, unclassified, expressed FN2968-S Chr5 9717001 9743000 0 0 Deletion 25999 LOC_Os05g17050 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2968-S Chr5 9717001 9743000 0 0 Deletion 25999 LOC_Os05g17810 SHR5-receptor-like kinase, putative, expressed FN2968-S Chr6 11923167 11923167 0 0 Insertion 1 upstream_gene_variant HET FN2968-S Chr6 17084368 17084419 0 0 Deletion 51 frameshift_variant&splice_acceptor_variant&splice_region_variant&intron_variant HET LOC_Os06g29750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2968-S Chr6 22482944 22482954 0 0 Deletion 10 upstream_gene_variant HET FN2968-S Chr6 25551052 25551052 0 0 Insertion 2 INTERGENIC HET FN2968-S Chr6 4597882 4597882 0 0 Insertion 2 UTR_5_PRIME HET FN2968-S Chr7 11802472 11802476 0 0 Deletion 4 downstream_gene_variant HET FN2968-S Chr7 132463 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2968-S Chr7 14674001 14698000 0 0 Deletion 23999 LOC_Os07g25590 decarboxylase, putative, expressed FN2968-S Chr7 14674001 14698000 0 0 Deletion 23999 LOC_Os07g25600 expressed protein FN2968-S Chr7 14674001 14698000 0 0 Deletion 23999 LOC_Os07g25620 retrotransposon protein, putative, unclassified, expressed FN2968-S Chr7 14674001 14698000 0 0 Deletion 23999 LOC_Os07g25630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2968-S Chr7 20943388 20943394 0 0 Deletion 6 INTERGENIC HOMO FN2968-S Chr7 21202638 21202638 0 0 Insertion 4 downstream_gene_variant HET FN2968-S Chr7 21998655 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os07g36720 retrotransposon protein, putative, unclassified, expressed FN2968-S Chr7 2658155 2658155 0 0 Insertion 104 intergenic_region HET FN2968-S Chr7 2747255 Chr5 977146 0 Translocation 0 FN2968-S Chr7 27613274 27613274 0 0 Insertion 1 upstream_gene_variant HET FN2968-S Chr7 7202681 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2968-S Chr7 8694006 8694007 0 0 Deletion 1 upstream_gene_variant HET FN2968-S Chr8 17284959 17284959 0 0 Insertion 1 downstream_gene_variant HET FN2968-S Chr8 18395712 18395713 0 0 Deletion 1 INTERGENIC HOMO FN2968-S Chr8 22577877 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g35800 retrotransposon protein, putative, unclassified, expressed FN2968-S Chr8 22645991 A-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2968-S Chr8 26825109 26825109 0 0 Insertion 61 upstream_gene_variant HET FN2968-S Chr8 26997820 Chr5 23804825 0 Translocation 0 FN2968-S Chr8 27887799 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2968-S Chr8 6771211 6771212 0 0 Deletion 1 upstream_gene_variant HET FN2968-S Chr9 21645029 21645029 0 0 Insertion 1 downstream_gene_variant HET FN2968-S Chr9 5560396 5560397 0 0 Deletion 1 upstream_gene_variant HET FN2968-S Chr9 6694001 6737000 0 0 Deletion 42999 LOC_Os09g11920 transposon protein, putative, unclassified, expressed FN2968-S Chr9 6694001 6737000 0 0 Deletion 42999 LOC_Os09g11930 expressed protein FN2968-S Chr9 6694001 6737000 0 0 Deletion 42999 LOC_Os09g11940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2968-S Chr9 6694001 6737000 0 0 Deletion 42999 LOC_Os09g11950 retrotransposon protein, putative, unclassified, expressed FN2968-S Chr9 6694001 6737000 0 0 Deletion 42999 LOC_Os09g11990 pc-fam-2 protein, putative, expressed FN2968-S Chr9 9091813 A-T 0 0 Single Base Substitution 0 INTERGENIC HET