FN2970-S Chr1 11333649 11333652 0 0 Deletion 3 inframe_deletion HET LOC_Os01g19960 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2970-S Chr1 14574001 14600000 0 0 Deletion 25999 LOC_Os01g25710 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2970-S Chr1 14574001 14600000 0 0 Deletion 25999 LOC_Os01g25720 disease resistance protein RGA4, putative, expressed FN2970-S Chr1 14574001 14600000 0 0 Deletion 25999 LOC_Os01g25730 retrotransposon protein, putative, unclassified FN2970-S Chr1 14574001 14600000 0 0 Deletion 25999 LOC_Os01g25740 powdery mildew resistance protein PM3F, putative, expressed FN2970-S Chr1 14574001 14600000 0 0 Deletion 25999 LOC_Os01g25760 powdery mildew resistance protein PM3F, putative, expressed FN2970-S Chr1 19415001 19436000 0 0 Deletion 20999 LOC_Os01g35080 retrotransposon protein, putative, unclassified FN2970-S Chr1 19415001 19436000 0 0 Deletion 20999 LOC_Os01g35090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2970-S Chr1 19415001 19436000 0 0 Deletion 20999 LOC_Os01g35100 zinc finger, C3HC4 type domain containing protein, expressed FN2970-S Chr1 19415001 19436000 0 0 Deletion 20999 LOC_Os01g35210 transposon protein, putative, CACTA, En/Spm sub-class FN2970-S Chr1 21243030 21243030 0 0 Insertion 3 INTERGENIC HET FN2970-S Chr1 21442377 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2970-S Chr1 22146001 22175000 0 0 Deletion 28999 LOC_Os01g39360 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr1 22146001 22175000 0 0 Deletion 28999 LOC_Os01g39370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2970-S Chr1 22146001 22175000 0 0 Deletion 28999 LOC_Os01g39380 SCD1, putative, expressed FN2970-S Chr1 22146001 22175000 0 0 Deletion 28999 LOC_Os01g40010 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr1 28904030 28904030 0 0 Insertion 4 INTERGENIC HET FN2970-S Chr1 39410801 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2970-S Chr1 39410806 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2970-S Chr1 3951643 3951645 0 0 Deletion 2 INTERGENIC HET FN2970-S Chr1 40490384 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2970-S Chr10 11456298 11456359 0 0 Deletion 61 upstream_gene_variant HET FN2970-S Chr10 12034434 12034441 0 0 Deletion 7 INTERGENIC HOMO FN2970-S Chr10 13395688 13395688 0 0 Insertion 4 intron_variant HET FN2970-S Chr10 13810701 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2970-S Chr10 16014368 16014369 0 0 Deletion 1 upstream_gene_variant HET FN2970-S Chr10 19877159 19877166 0 0 Deletion 7 INTERGENIC HOMO FN2970-S Chr10 4398001 4416000 0 0 Deletion 17999 LOC_Os10g08160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2970-S Chr10 4398001 4416000 0 0 Deletion 17999 LOC_Os10g08170 expressed protein FN2970-S Chr10 5512865 5512865 0 0 Insertion 1 upstream_gene_variant HET FN2970-S Chr10 6197001 6213000 0 0 Deletion 15999 LOC_Os10g11190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2970-S Chr10 6197001 6213000 0 0 Deletion 15999 LOC_Os10g11200 aminotransferase, classes I and II, domain containing protein, expressed FN2970-S Chr10 7286001 7317000 0 0 Deletion 30999 LOC_Os10g13500 expressed protein FN2970-S Chr10 7286001 7317000 0 0 Deletion 30999 LOC_Os10g13505 expressed protein FN2970-S Chr10 7286001 7317000 0 0 Deletion 30999 LOC_Os10g13510 transposable element protein, putative, containing Pfam profile: PF03108, MuDR, expressed FN2970-S Chr10 7286001 7317000 0 0 Deletion 30999 LOC_Os10g13690 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr11 1023001 1049000 0 0 Deletion 25999 LOC_Os11g02964 FAR1 family protein, expressed FN2970-S Chr11 1023001 1049000 0 0 Deletion 25999 LOC_Os11g02980 expressed protein FN2970-S Chr11 1023001 1049000 0 0 Deletion 25999 LOC_Os11g02990 conserved hypothetical protein FN2970-S Chr11 1023001 1049000 0 0 Deletion 25999 LOC_Os11g03000 retrotransposon protein, putative, unclassified FN2970-S Chr11 1023001 1049000 0 0 Deletion 25999 LOC_Os11g03010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2970-S Chr11 1023001 1049000 0 0 Deletion 25999 LOC_Os11g03040 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2970-S Chr11 10833001 10853000 0 0 Deletion 19999 LOC_Os11g19010 transposon protein, putative, CACTA, En/Spm sub-class FN2970-S Chr11 10833001 10853000 0 0 Deletion 19999 LOC_Os11g19020 expressed protein FN2970-S Chr11 10833001 10853000 0 0 Deletion 19999 LOC_Os11g19030 FAR1 family protein, expressed FN2970-S Chr11 10833001 10853000 0 0 Deletion 19999 LOC_Os11g19110 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr11 10848049 Chr1 17616091 0 Translocation 0 LOC_Os11g19030 FAR1 family protein, expressed FN2970-S Chr11 10848486 Chr1 17616073 0 Translocation 0 FN2970-S Chr11 11217337 11217341 0 0 Deletion 4 INTERGENIC HET FN2970-S Chr11 15535465 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2970-S Chr11 18735167 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2970-S Chr11 19363264 Chr2 31415402 0 Translocation 0 FN2970-S Chr11 19363270 Chr2 31461361 0 Translocation 0 LOC_Os02g51370 glutaredoxin, putative, expressed FN2970-S Chr11 24199989 24199989 0 0 Insertion 2 INTERGENIC HET FN2970-S Chr11 24709249 Chr7 7793849 0 Translocation 0 FN2970-S Chr11 26601834 26601835 0 0 Deletion 1 upstream_gene_variant HET FN2970-S Chr11 27065088 27065088 0 0 Insertion 1 intron_variant HET FN2970-S Chr11 28480779 Chr4 3329195 0 Translocation 0 FN2970-S Chr11 28996150 28996151 0 0 Deletion 1 INTRON HOMO FN2970-S Chr11 6353123 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2970-S Chr11 6353124 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2970-S Chr11 6353125 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2970-S Chr11 8142004 8142007 0 0 Deletion 3 INTERGENIC HET FN2970-S Chr11 8145616 8145641 0 0 Deletion 25 downstream_gene_variant HET FN2970-S Chr11 8237001 8247000 0 0 Deletion 9999 LOC_Os11g14630 expressed protein FN2970-S Chr11 8237001 8247000 0 0 Deletion 9999 LOC_Os11g14970 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr11 8509111 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2970-S Chr11 8588766 8588767 0 0 Deletion 1 INTRON HET FN2970-S Chr11 9980951 10795252 0 0 Inversion 814301 FN2970-S Chr12 11616289 11616290 0 0 Deletion 1 upstream_gene_variant HET FN2970-S Chr12 11942001 11966000 0 0 Deletion 23999 LOC_Os12g20460 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2970-S Chr12 11942001 11966000 0 0 Deletion 23999 LOC_Os12g20470 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2970-S Chr12 11942001 11966000 0 0 Deletion 23999 LOC_Os12g21660 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr12 15230814 15230818 0 0 Deletion 4 INTERGENIC HOMO FN2970-S Chr12 15334001 15385000 0 0 Deletion 50999 LOC_Os12g26300 expressed protein FN2970-S Chr12 15334001 15385000 0 0 Deletion 50999 LOC_Os12g26310 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr12 15334001 15385000 0 0 Deletion 50999 LOC_Os12g26320 retrotransposon, putative, centromere-specific, expressed FN2970-S Chr12 15334001 15385000 0 0 Deletion 50999 LOC_Os12g26330 expressed protein FN2970-S Chr12 15334001 15385000 0 0 Deletion 50999 LOC_Os12g26370 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2970-S Chr12 17661072 17661073 0 0 Deletion 1 frameshift_variant HET LOC_Os12g29605 expressed protein FN2970-S Chr12 20633789 20633789 0 0 Insertion 9 upstream_gene_variant HET FN2970-S Chr12 23324998 23325003 0 0 Deletion 5 INTERGENIC HOMO FN2970-S Chr12 24420001 24449000 0 0 Deletion 28999 LOC_Os12g39590 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr12 24420001 24449000 0 0 Deletion 28999 LOC_Os12g39600 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr12 24420001 24449000 0 0 Deletion 28999 LOC_Os12g39610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2970-S Chr12 25785111 25785111 0 0 Insertion 20 upstream_gene_variant HET FN2970-S Chr12 26464107 26464121 0 0 Deletion 14 downstream_gene_variant HET FN2970-S Chr12 4006323 Chr4 33382101 0 Translocation 0 LOC_Os12g07900 expressed protein FN2970-S Chr12 4006867 Chr4 33382100 0 Translocation 0 LOC_Os12g07900 expressed protein FN2970-S Chr2 10073741 10073742 0 0 Deletion 1 INTERGENIC HET FN2970-S Chr2 14368001 14415000 0 0 Deletion 46999 LOC_Os02g24780 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr2 14368001 14415000 0 0 Deletion 46999 LOC_Os02g24790 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr2 14368001 14415000 0 0 Deletion 46999 LOC_Os02g24800 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr2 14368001 14415000 0 0 Deletion 46999 LOC_Os02g24810 expressed protein FN2970-S Chr2 14368001 14415000 0 0 Deletion 46999 LOC_Os02g24820 hypothetical protein FN2970-S Chr2 14368001 14415000 0 0 Deletion 46999 LOC_Os02g24830 expressed protein FN2970-S Chr2 14368001 14415000 0 0 Deletion 46999 LOC_Os02g24840 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2970-S Chr2 14368001 14415000 0 0 Deletion 46999 LOC_Os02g24850 retrotransposon protein, putative, Ty3-gypsy subclass FN2970-S Chr2 14368001 14415000 0 0 Deletion 46999 LOC_Os02g24860 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr2 14785757 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2970-S Chr2 15932001 15945000 0 0 Deletion 12999 LOC_Os02g27110 expressed protein FN2970-S Chr2 16080801 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2970-S Chr2 19067207 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2970-S Chr2 21197001 21217000 0 0 Deletion 19999 LOC_Os02g35280 retrotransposon protein, putative, unclassified FN2970-S Chr2 21197001 21217000 0 0 Deletion 19999 LOC_Os02g35290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2970-S Chr2 27887001 27908000 0 0 Deletion 20999 LOC_Os02g45790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2970-S Chr2 27887001 27908000 0 0 Deletion 20999 LOC_Os02g45800 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr2 27887001 27908000 0 0 Deletion 20999 LOC_Os02g45810 WD domain, G-beta repeat domain containing protein, expressed FN2970-S Chr2 27887001 27908000 0 0 Deletion 20999 LOC_Os02g46110 expressed protein FN2970-S Chr2 28489227 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2970-S Chr2 29306489 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN2970-S Chr2 31417001 31481000 0 0 Deletion 63999 LOC_Os02g51320 helix-loop-helix DNA-binding domain containing protein, expressed FN2970-S Chr2 31417001 31481000 0 0 Deletion 63999 LOC_Os02g51330 MAG2, putative, expressed FN2970-S Chr2 31417001 31481000 0 0 Deletion 63999 LOC_Os02g51340 hypothetical protein FN2970-S Chr2 31417001 31481000 0 0 Deletion 63999 LOC_Os02g51350 OsFBK10 - F-box domain and kelch repeat containing protein, expressed FN2970-S Chr2 31417001 31481000 0 0 Deletion 63999 LOC_Os02g51360 expressed protein FN2970-S Chr2 31417001 31481000 0 0 Deletion 63999 LOC_Os02g51370 glutaredoxin, putative, expressed FN2970-S Chr2 31417001 31481000 0 0 Deletion 63999 LOC_Os02g51380 expressed protein FN2970-S Chr2 31417001 31481000 0 0 Deletion 63999 LOC_Os02g51390 expressed protein FN2970-S Chr2 31417001 31481000 0 0 Deletion 63999 LOC_Os02g51400 AAA family ATPase, putative, expressed FN2970-S Chr2 7906071 7906072 0 0 Deletion 1 upstream_gene_variant HET FN2970-S Chr3 18105228 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2970-S Chr3 20601228 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2970-S Chr3 20747778 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2970-S Chr3 20862130 20862130 0 0 Insertion 1 upstream_gene_variant HET FN2970-S Chr3 2355512 2355512 0 0 Insertion 89 upstream_gene_variant HET FN2970-S Chr3 27454431 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2970-S Chr3 32944306 32944306 0 0 Insertion 1 upstream_gene_variant HET FN2970-S Chr3 5913001 5928000 0 0 Deletion 14999 LOC_Os03g11470 DEAD/DEAH box helicase domain containing protein, expressed FN2970-S Chr3 5913001 5928000 0 0 Deletion 14999 LOC_Os03g11960 copper/zinc superoxide dismutase, putative, expressed FN2970-S Chr3 7925608 7925623 0 0 Deletion 15 disruptive_inframe_deletion HET LOC_Os03g14600 transposon protein, putative, unclassified, expressed FN2970-S Chr3 9773590 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2970-S Chr4 10243001 10265000 0 0 Deletion 21999 LOC_Os04g18550 expressed protein FN2970-S Chr4 10243001 10265000 0 0 Deletion 21999 LOC_Os04g18559 retrotransposon protein, putative, unclassified FN2970-S Chr4 10243001 10265000 0 0 Deletion 21999 LOC_Os04g18570 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr4 10243001 10265000 0 0 Deletion 21999 LOC_Os04g18580 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2970-S Chr4 11182846 11182860 0 0 Deletion 14 upstream_gene_variant HET FN2970-S Chr4 14748003 14748003 0 0 Insertion 2 INTRON HET FN2970-S Chr4 17670352 A-C 0 0 Single Base Substitution 0 INTRON HOMO FN2970-S Chr4 2013827 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2970-S Chr4 29203953 29203953 0 0 Insertion 1 frameshift_variant HET LOC_Os04g48970 transposon protein, putative, unclassified, expressed FN2970-S Chr4 29649444 29649445 0 0 Deletion 1 upstream_gene_variant HET FN2970-S Chr4 34558967 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g58020 MYB_Al protein, putative, expressed FN2970-S Chr4 35261571 35261571 0 0 Insertion 1 upstream_gene_variant HET FN2970-S Chr4 35479638 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2970-S Chr4 4187104 4187108 0 0 Deletion 4 downstream_gene_variant HET FN2970-S Chr4 4682026 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g08610 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr4 5019177 5019192 0 0 Deletion 15 INTERGENIC HOMO FN2970-S Chr4 8778001 8812000 0 0 Deletion 33999 LOC_Os04g16170 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr4 8778001 8812000 0 0 Deletion 33999 LOC_Os04g16180 retrotransposon protein, putative, unclassified FN2970-S Chr4 8778001 8812000 0 0 Deletion 33999 LOC_Os04g16190 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr4 8778001 8812000 0 0 Deletion 33999 LOC_Os04g16200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2970-S Chr4 8778001 8812000 0 0 Deletion 33999 LOC_Os04g16220 retrotransposon protein, putative, Ty3-gypsy subclass FN2970-S Chr4 8778001 8812000 0 0 Deletion 33999 LOC_Os04g16350 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr5 10936804 10936805 0 0 Deletion 1 INTERGENIC HOMO FN2970-S Chr5 12189001 12202000 0 0 Deletion 12999 LOC_Os05g20780 retrotransposon protein, putative, Ty3-gypsy subclass FN2970-S Chr5 12189001 12202000 0 0 Deletion 12999 LOC_Os05g20830 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr5 14223371 Chr4 50479 0 Translocation 0 FN2970-S Chr5 143975 G-A 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN2970-S Chr5 16923169 16923181 0 0 Deletion 12 INTRON HOMO FN2970-S Chr5 18627717 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2970-S Chr5 20434001 20561000 0 0 Deletion 126999 LOC_Os05g34470 expressed protein FN2970-S Chr5 20434001 20561000 0 0 Deletion 126999 LOC_Os05g34480 expressed protein FN2970-S Chr5 20434001 20561000 0 0 Deletion 126999 LOC_Os05g34490 expressed protein FN2970-S Chr5 20434001 20561000 0 0 Deletion 126999 LOC_Os05g34500 expressed protein FN2970-S Chr5 20434001 20561000 0 0 Deletion 126999 LOC_Os05g34510 expressed protein FN2970-S Chr5 20434001 20561000 0 0 Deletion 126999 LOC_Os05g34520 ulp1 protease family protein, putative, expressed FN2970-S Chr5 20434001 20561000 0 0 Deletion 126999 LOC_Os05g34530 auxin-inducible protein, putative, expressed FN2970-S Chr5 20434001 20561000 0 0 Deletion 126999 LOC_Os05g34540 rab GDP dissociation inhibitor alpha, putative, expressed FN2970-S Chr5 20434001 20561000 0 0 Deletion 126999 LOC_Os05g34550 MLO domain containing protein, putative, expressed FN2970-S Chr5 20434001 20561000 0 0 Deletion 126999 LOC_Os05g34560 expressed protein FN2970-S Chr5 20434001 20561000 0 0 Deletion 126999 LOC_Os05g34570 pentatricopeptide, putative, expressed FN2970-S Chr5 20434001 20561000 0 0 Deletion 126999 LOC_Os05g34580 hypothetical protein FN2970-S Chr5 20434001 20561000 0 0 Deletion 126999 LOC_Os05g34590 conserved hypothetical protein FN2970-S Chr5 20434001 20561000 0 0 Deletion 126999 LOC_Os05g34600 no apical meristem protein, putative, expressed FN2970-S Chr5 20434001 20561000 0 0 Deletion 126999 LOC_Os05g34610 retrotransposon protein, putative, unclassified FN2970-S Chr5 20434001 20561000 0 0 Deletion 126999 LOC_Os05g34620 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr5 20434001 20561000 0 0 Deletion 126999 LOC_Os05g34630 hydrolase, alpha/beta fold family domain containing protein, expressed FN2970-S Chr5 20434001 20561000 0 0 Deletion 126999 LOC_Os05g34640 PHD finger protein, putative, expressed FN2970-S Chr5 20434001 20561000 0 0 Deletion 126999 LOC_Os05g34650 DUF647 domain containing protein, putative, expressed FN2970-S Chr5 20434001 20561000 0 0 Deletion 126999 LOC_Os05g34655 expressed protein FN2970-S Chr5 20434001 20561000 0 0 Deletion 126999 LOC_Os05g35150 expressed protein FN2970-S Chr5 20591241 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2970-S Chr5 25750379 25750379 0 0 Insertion 2 downstream_gene_variant HET FN2970-S Chr5 6821435 6821436 0 0 Deletion 1 INTERGENIC HET FN2970-S Chr5 9004001 9036000 0 0 Deletion 31999 LOC_Os05g15950 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr5 9004001 9036000 0 0 Deletion 31999 LOC_Os05g15960 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr5 9004001 9036000 0 0 Deletion 31999 LOC_Os05g15970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2970-S Chr5 9004001 9036000 0 0 Deletion 31999 LOC_Os05g15980 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2970-S Chr5 9004001 9036000 0 0 Deletion 31999 LOC_Os05g15990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2970-S Chr5 9004001 9036000 0 0 Deletion 31999 LOC_Os05g16000 expressed protein FN2970-S Chr5 9952385 9952385 0 0 Insertion 1 downstream_gene_variant HET FN2970-S Chr6 12007334 12007334 0 0 Insertion 1 upstream_gene_variant HET FN2970-S Chr6 1243518 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2970-S Chr6 17068260 17068270 0 0 Deletion 10 downstream_gene_variant HET FN2970-S Chr6 29376763 29376764 0 0 Deletion 1 upstream_gene_variant HET FN2970-S Chr6 29889698 29890423 0 0 Inversion 725 LOC_Os06g49330 expressed protein FN2970-S Chr6 7544400 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01020 SOR/SNZ family protein, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01030 glycosyl transferase, group 1 domain containing protein, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01040 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01050 retrotransposon protein, putative, unclassified FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01060 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01070 peptide transporter, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01080 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01090 transmembrane amino acid transporter protein, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01100 legume lectins beta domain containing protein, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01110 laccase precursor protein, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01114 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01120 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01130 pentatricopeptide containing protein, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01140 MBTB12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01150 fatty acid hydroxylase, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01160 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01170 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01180 ZOS7-01 - C2H2 zinc finger protein, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01190 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01200 tetraacyldisaccharide 4-kinase, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01214 transposon protein, putative, unclassified, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01230 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01240 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01250 tobamovirus multiplication protein, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01260 la domain containing protein, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01270 transposon protein, putative, unclassified, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01280 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01290 transposon protein, putative, unclassified, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01300 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01310 glutamate receptor, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01320 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01330 retrotransposon protein, putative, unclassified FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01340 gibberellin 2-beta-dioxygenase 7, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01350 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01360 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01370 peroxidase precursor, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01380 peroxidase precursor, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01390 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01400 peroxidase precursor, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01410 peroxidase precursor, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01420 peroxidase precursor, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01440 plastocyanin-like domain containing protein, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01450 DNA directed RNA polymerase, 7 kDa subunit domain containing protein, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01460 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01470 circumsporozoite protein precursor, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01480 oxygen evolving enhancer protein 3 domain containing protein, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01490 kinesin motor domain containing protein, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01500 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01510 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01520 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01530 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01540 Ser/Thr protein phosphatase family protein, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01550 leucine rich repeat domain containing protein, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01560 transporter family protein, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01570 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01580 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01590 hypothetical protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01600 dirigent, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01610 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01620 dirigent, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01640 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01650 transposon protein, putative, unclassified, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01660 dirigent, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01670 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01680 dirigent, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01690 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01700 DEFL2 - Defensin and Defensin-like DEFL family, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01710 phytosulfokine receptor precursor, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01720 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01730 WD-40 repeat family protein, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01740 cysteine protease, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01750 MATE efflux family protein, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01760 aminotransferase, classes I and II, domain containing protein, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01770 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01780 GTPase activating protein, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01790 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01800 cysteine proteinase EP-B 1 precursor, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01810 potassium channel protein, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01820 OsMADS15 - MADS-box family gene with MIKCc type-box, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01830 hypothetical protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01840 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01850 NLI interacting factor-like phosphatase, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01860 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01870 ribosomal protein L13, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01880 VIP4, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01890 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01900 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01904 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01910 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01920 nucleolar GTP-binding protein 1, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01930 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01940 sister chromatid cohesion 2, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01950 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01960 hypothetical protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01970 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g01990 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02000 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02030 thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02040 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02050 retrotransposon protein, putative, Ty3-gypsy subclass FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02060 WRKY29, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02070 retrotransposon protein, putative, Ty3-gypsy subclass FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02080 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02090 Ser/Thr protein phosphatase family protein, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02100 flavin-containing monooxygenase family protein, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02110 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02120 flavin-containing monooxygenase family protein, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02130 flavin-containing monooxygenase family protein, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02140 flavin-containing monooxygenase family protein, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02150 3-5 exonuclease domain-containing protein, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02170 3-5 exonuclease domain-containing protein, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02180 3-5 exonuclease domain-containing protein, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02192 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02200 plastocyanin-like domain containing protein, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02210 eukaryotic translation initiation factor 5A, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02230 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02240 transcription factor X1, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02250 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02260 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02270 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02280 pentatricopeptide, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02290 OsFBX208 - F-box domain containing protein, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02300 tetratricopeptide repeat domain containing protein, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02310 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02330 protein phosphatase 2C, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02340 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02350 casein kinase II subunit alpha-2, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02360 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02370 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02380 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02390 hypothetical protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02400 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02410 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02420 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02430 expressed protein FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02440 peroxidase precursor, putative, expressed FN2970-S Chr7 1 845000 0 0 Deletion 844999 LOC_Os07g02450 receptor-like protein kinase 2 precursor, putative, expressed FN2970-S Chr7 11810008 11810008 0 0 Insertion 51 upstream_gene_variant HET FN2970-S Chr7 22691001 22713000 0 0 Deletion 21999 LOC_Os07g37840 lipase, putative, expressed FN2970-S Chr7 22691001 22713000 0 0 Deletion 21999 LOC_Os07g37850 expressed protein FN2970-S Chr7 22691001 22713000 0 0 Deletion 21999 LOC_Os07g37860 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr7 22691001 22713000 0 0 Deletion 21999 LOC_Os07g37870 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr7 26188965 26188978 0 0 Deletion 13 INTRON HET FN2970-S Chr7 545670 545673 0 0 Deletion 3 upstream_gene_variant HET FN2970-S Chr8 17771001 17812000 0 0 Deletion 40999 LOC_Os08g29030 expressed protein FN2970-S Chr8 17771001 17812000 0 0 Deletion 40999 LOC_Os08g29040 protein kinase domain containing protein, expressed FN2970-S Chr8 17771001 17812000 0 0 Deletion 40999 LOC_Os08g29050 retrotransposon protein, putative, unclassified FN2970-S Chr8 17771001 17812000 0 0 Deletion 40999 LOC_Os08g29060 retrotransposon protein, putative, unclassified FN2970-S Chr8 17771001 17812000 0 0 Deletion 40999 LOC_Os08g29070 retrotransposon protein, putative, unclassified FN2970-S Chr8 17771001 17812000 0 0 Deletion 40999 LOC_Os08g29080 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr8 18654001 18671000 0 0 Deletion 16999 LOC_Os08g30310 transposon protein, putative, CACTA, En/Spm sub-class FN2970-S Chr8 18654001 18671000 0 0 Deletion 16999 LOC_Os08g30320 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2970-S Chr8 18654001 18671000 0 0 Deletion 16999 LOC_Os08g30330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2970-S Chr8 20306376 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2970-S Chr8 25051223 25051957 0 0 Inversion 734 FN2970-S Chr8 27970626 27970626 0 0 Insertion 2 UTR_5_PRIME HET FN2970-S Chr8 28122946 Chr7 840673 0 Translocation 0 LOC_Os07g02440 peroxidase precursor, putative, expressed FN2970-S Chr8 28122960 Chr7 840680 0 Translocation 0 LOC_Os07g02440 peroxidase precursor, putative, expressed FN2970-S Chr8 5896001 5907000 0 0 Deletion 10999 LOC_Os08g10180 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr8 5896001 5907000 0 0 Deletion 10999 LOC_Os08g10310 SHR5-receptor-like kinase, putative, expressed FN2970-S Chr8 6341171 6341171 0 0 Insertion 2 downstream_gene_variant HET FN2970-S Chr8 7414078 7414079 0 0 Deletion 1 upstream_gene_variant HET FN2970-S Chr8 8545561 8545562 0 0 Deletion 1 downstream_gene_variant HET FN2970-S Chr8 9030918 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2970-S Chr8 9064370 9064379 0 0 Deletion 9 INTERGENIC HET FN2970-S Chr8 9621855 9621858 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os08g15830 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr9 10082712 10082720 0 0 Deletion 8 INTRON HET FN2970-S Chr9 12899378 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g21370 cysteine proteinase EP-B 1 precursor, putative, expressed FN2970-S Chr9 12939582 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN2970-S Chr9 14215712 14215713 0 0 Deletion 1 upstream_gene_variant HET FN2970-S Chr9 17277020 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2970-S Chr9 19847871 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2970-S Chr9 19847872 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os09g33610 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr9 20927537 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2970-S Chr9 22463082 22463082 0 0 Insertion 9 upstream_gene_variant HET FN2970-S Chr9 4753131 4753204 0 0 Deletion 73 upstream_gene_variant HET FN2970-S Chr9 4904955 4904963 0 0 Deletion 8 upstream_gene_variant HET FN2970-S Chr9 682001 702000 0 0 Deletion 19999 LOC_Os09g01980 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr9 682001 702000 0 0 Deletion 19999 LOC_Os09g01990 retrotransposon protein, putative, unclassified, expressed FN2970-S Chr9 682001 702000 0 0 Deletion 19999 LOC_Os09g02000 expressed protein FN2970-S Chr9 682001 702000 0 0 Deletion 19999 LOC_Os09g02010 expressed protein FN2970-S Chr9 8752526 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g14730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2970-S Chr9 9097561 9097570 0 0 Deletion 9 INTRON HET FN2970-S Chr9 9840475 T-G 0 0 Single Base Substitution 0 INTERGENIC HET