FN2973-S Chr1 12927356 12927470 0 0 Inversion 114 FN2973-S Chr1 13540139 C-G 0 0 Single Base Substitution 0 INTRON HET FN2973-S Chr1 17379662 17379667 0 0 Deletion 5 INTRON HET FN2973-S Chr1 32624724 32624731 0 0 Deletion 7 INTRON HOMO FN2973-S Chr1 32994875 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2973-S Chr1 37731485 37903887 0 0 Inversion 172402 FN2973-S Chr1 37731490 37903887 0 0 Inversion 172397 FN2973-S Chr1 37800867 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2973-S Chr1 7966821 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr10 11844757 11844757 0 0 Insertion 1 upstream_gene_variant HET FN2973-S Chr10 11987795 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr11 11664802 11664803 0 0 Deletion 1 upstream_gene_variant HET FN2973-S Chr11 15452229 Chr2 15839407 0 Translocation 0 FN2973-S Chr11 15452548 Chr2 15839405 0 Translocation 0 FN2973-S Chr11 18372518 18372518 0 0 Insertion 66 downstream_gene_variant HET FN2973-S Chr11 23968463 23968464 0 0 Deletion 1 INTRON HET FN2973-S Chr11 26132492 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr11 26409166 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr11 4298088 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr11 4791088 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr11 4831135 C-A 0 0 Single Base Substitution 0 INTRON HET FN2973-S Chr11 7569712 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr11 833876 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2973-S Chr12 13193504 13193505 0 0 Deletion 1 INTERGENIC HOMO FN2973-S Chr12 16109750 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g27390 transposon protein, putative, unclassified, expressed FN2973-S Chr12 16145252 16145258 0 0 Deletion 6 CODON_CHANGE_PLUS_CODON_DELETION HOMO LOC_Os12g27440 expressed protein FN2973-S Chr12 17125596 Chr4 27671344 0 Translocation 0 FN2973-S Chr12 17125831 Chr4 27671334 0 Translocation 0 FN2973-S Chr12 18235845 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr12 22267817 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr12 23764589 23764589 0 0 Insertion 93 upstream_gene_variant HET FN2973-S Chr12 26145426 Chr11 17687332 0 Translocation 0 FN2973-S Chr12 5187505 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr12 8714962 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr2 10742427 T-C 0 0 Single Base Substitution 0 INTRON HET FN2973-S Chr2 11233365 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr2 12670583 12670911 0 0 Inversion 328 FN2973-S Chr2 13376773 13376773 0 0 Insertion 36 upstream_gene_variant HET FN2973-S Chr2 20404001 20513000 0 0 Deletion 108999 LOC_Os02g34130 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2973-S Chr2 20404001 20513000 0 0 Deletion 108999 LOC_Os02g34140 expressed protein FN2973-S Chr2 20404001 20513000 0 0 Deletion 108999 LOC_Os02g34150 hypothetical protein FN2973-S Chr2 20404001 20513000 0 0 Deletion 108999 LOC_Os02g34160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2973-S Chr2 20404001 20513000 0 0 Deletion 108999 LOC_Os02g34170 transposon protein, putative, unclassified, expressed FN2973-S Chr2 20404001 20513000 0 0 Deletion 108999 LOC_Os02g34180 transposon protein, putative, unclassified, expressed FN2973-S Chr2 20404001 20513000 0 0 Deletion 108999 LOC_Os02g34190 expressed protein FN2973-S Chr2 20404001 20513000 0 0 Deletion 108999 LOC_Os02g34200 transposon protein, putative, CACTA, En/Spm sub-class FN2973-S Chr2 20404001 20513000 0 0 Deletion 108999 LOC_Os02g34210 hypothetical protein FN2973-S Chr2 20404001 20513000 0 0 Deletion 108999 LOC_Os02g34220 expressed protein FN2973-S Chr2 20404001 20513000 0 0 Deletion 108999 LOC_Os02g34240 transposon protein, putative, unclassified FN2973-S Chr2 20404001 20513000 0 0 Deletion 108999 LOC_Os02g34250 expressed protein FN2973-S Chr2 20404001 20513000 0 0 Deletion 108999 LOC_Os02g34260 AP2 domain containing protein, expressed FN2973-S Chr2 20404001 20513000 0 0 Deletion 108999 LOC_Os02g34270 AP2 domain containing protein, expressed FN2973-S Chr2 20404001 20513000 0 0 Deletion 108999 LOC_Os02g34280 hypothetical protein FN2973-S Chr2 20530001 20637000 0 0 Deletion 106999 LOC_Os02g34320 basic helix-loop-helix, putative, expressed FN2973-S Chr2 20530001 20637000 0 0 Deletion 106999 LOC_Os02g34330 retrotransposon protein, putative, unclassified, expressed FN2973-S Chr2 20530001 20637000 0 0 Deletion 106999 LOC_Os02g34340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2973-S Chr2 20530001 20637000 0 0 Deletion 106999 LOC_Os02g34350 retrotransposon protein, putative, unclassified, expressed FN2973-S Chr2 20530001 20637000 0 0 Deletion 106999 LOC_Os02g34360 expressed protein FN2973-S Chr2 20530001 20637000 0 0 Deletion 106999 LOC_Os02g34370 expressed protein FN2973-S Chr2 20530001 20637000 0 0 Deletion 106999 LOC_Os02g34380 retrotransposon protein, putative, LINE subclass, expressed FN2973-S Chr2 20530001 20637000 0 0 Deletion 106999 LOC_Os02g34390 expressed protein FN2973-S Chr2 20530001 20637000 0 0 Deletion 106999 LOC_Os02g34400 expressed protein FN2973-S Chr2 20530001 20637000 0 0 Deletion 106999 LOC_Os02g34410 U-box domain-containing protein, putative, expressed FN2973-S Chr2 20530001 20637000 0 0 Deletion 106999 LOC_Os02g34430 serine/threonine-protein kinase, putative, expressed FN2973-S Chr2 20530001 20637000 0 0 Deletion 106999 LOC_Os02g34450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34460 40S ribosomal protein S10, putative, expressed FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34470 expressed protein FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34490 Leucine Rich Repeat family protein, expressed FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34500 expressed protein FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34510 vacuolar ATP synthase, putative, expressed FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34520 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34530 OsPDIL5-3 protein disulfide isomerase PDIL5-3, expressed FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34540 tetratricopeptide repeat containing protein, putative, expressed FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34550 transposon protein, putative, unclassified, expressed FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34560 plant neutral invertase domain containing protein, expressed FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34570 exosome complex exonuclease, putative, expressed FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34580 ammonium transporter protein, putative, expressed FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34590 transposon protein, putative, unclassified, expressed FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34600 CAMK_CAMK_like.13 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34610 expressed protein FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34620 hypothetical protein FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34630 MYB family transcription factor, putative, expressed FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34640 expressed protein FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34650 expressed protein FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34660 retrotransposon protein, putative, unclassified, expressed FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34670 retrotransposon protein, putative, unclassified, expressed FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34680 ZOS2-09 - C2H2 zinc finger protein, expressed FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34690 transmembrane 9 superfamily member, putative, expressed FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34700 expressed protein FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34710 expressed protein FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34730 transposon protein, putative, Mariner sub-class, expressed FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34740 retrotransposon protein, putative, unclassified, expressed FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34750 leucine-rich repeat receptor-like protein kinase 1, putative, expressed FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34760 retrotransposon protein, putative, unclassified, expressed FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34770 receptor-like protein kinase 2 precursor, putative FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g34780 hypothetical protein FN2973-S Chr2 20644001 20854000 0 0 Deletion 209999 LOC_Os02g35270 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2973-S Chr2 31288552 32097842 0 0 Inversion 809290 FN2973-S Chr2 31288556 32097844 0 0 Inversion 809288 FN2973-S Chr2 31617688 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr2 6364206 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr2 6797130 6797130 0 0 Insertion 3 INTERGENIC HET FN2973-S Chr3 14290451 A-T 0 0 Single Base Substitution 0 INTRON HET FN2973-S Chr3 18459228 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr3 21619183 21620636 0 0 Inversion 1453 LOC_Os03g38920 expressed protein FN2973-S Chr3 26343610 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g46560 RPD1, putative, expressed FN2973-S Chr3 34754109 34754111 0 0 Deletion 2 FRAME_SHIFT HOMO LOC_Os03g61190 retrotransposon protein, putative, unclassified, expressed FN2973-S Chr4 14858156 14858157 0 0 Deletion 1 frameshift_variant HET LOC_Os04g25640 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2973-S Chr4 18089523 A-G 0 0 Single Base Substitution 0 INTRON HET FN2973-S Chr4 22650339 22651489 0 0 Inversion 1150 LOC_Os04g38060 retrotransposon protein, putative, unclassified, expressed FN2973-S Chr4 28760012 28760012 0 0 Insertion 2 upstream_gene_variant HET FN2973-S Chr4 5185465 5185468 0 0 Deletion 3 INTRON HOMO FN2973-S Chr5 10892345 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr5 11974130 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g20410 retrotransposon protein, putative, Ty3-gypsy subclass FN2973-S Chr5 17389650 17389668 0 0 Deletion 18 upstream_gene_variant HET FN2973-S Chr5 20385735 20385745 0 0 Deletion 10 INTRON HET FN2973-S Chr5 20408033 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr5 20408034 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr5 22511899 22511899 0 0 Insertion 11 intergenic_region HET FN2973-S Chr5 26274806 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr5 2644354 2644957 0 0 Inversion 603 FN2973-S Chr5 26904466 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN2973-S Chr5 29017191 29017191 0 0 Insertion 2 INTERGENIC HET FN2973-S Chr6 12403195 12403196 0 0 Deletion 1 INTERGENIC HET FN2973-S Chr6 13800258 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr6 19653491 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr6 22233654 22233668 0 0 Deletion 14 INTERGENIC HET FN2973-S Chr6 23327787 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g39310 retrotransposon protein, putative, unclassified FN2973-S Chr6 24956253 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2973-S Chr6 26572790 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr6 28305911 28305913 0 0 Deletion 2 INTERGENIC HET FN2973-S Chr6 28742544 28742558 0 0 Deletion 14 INTRON HET FN2973-S Chr6 3814976 3814977 0 0 Deletion 1 frameshift_variant HET LOC_Os06g07850 retrotransposon protein, putative, unclassified, expressed FN2973-S Chr6 4344479 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr6 5062857 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2973-S Chr6 6073829 6073832 0 0 Deletion 3 INTERGENIC HET FN2973-S Chr6 7914609 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr6 8231653 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2973-S Chr6 9539182 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr7 11526318 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr7 12698808 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr7 13278418 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g23494 expressed protein FN2973-S Chr7 1472759 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr7 18048001 18148000 0 0 Deletion 99999 LOC_Os07g30530 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2973-S Chr7 18048001 18148000 0 0 Deletion 99999 LOC_Os07g30540 variant latency associated nuclear antigen, putative FN2973-S Chr7 18048001 18148000 0 0 Deletion 99999 LOC_Os07g30550 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2973-S Chr7 18048001 18148000 0 0 Deletion 99999 LOC_Os07g30560 retrotransposon protein, putative, Ty3-gypsy subclass FN2973-S Chr7 18048001 18148000 0 0 Deletion 99999 LOC_Os07g30570 retrotransposon protein, putative, Ty3-gypsy subclass FN2973-S Chr7 18048001 18148000 0 0 Deletion 99999 LOC_Os07g30580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2973-S Chr7 18048001 18148000 0 0 Deletion 99999 LOC_Os07g30590 LTPL55 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed FN2973-S Chr7 18048001 18148000 0 0 Deletion 99999 LOC_Os07g30600 male sterility protein, putative, expressed FN2973-S Chr7 18048001 18148000 0 0 Deletion 99999 LOC_Os07g30610 cytokinin-O-glucosyltransferase 2, putative, expressed FN2973-S Chr7 18048001 18148000 0 0 Deletion 99999 LOC_Os07g30620 cytokinin-O-glucosyltransferase 2, putative, expressed FN2973-S Chr7 18048001 18148000 0 0 Deletion 99999 LOC_Os07g30630 expressed protein FN2973-S Chr7 18048001 18148000 0 0 Deletion 99999 LOC_Os07g30640 ubiquitin fusion protein, putative, expressed FN2973-S Chr7 18048001 18148000 0 0 Deletion 99999 LOC_Os07g30650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2973-S Chr7 18048001 18148000 0 0 Deletion 99999 LOC_Os07g30660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2973-S Chr7 18097958 18097973 0 0 Deletion 15 inframe_deletion HET LOC_Os07g30580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2973-S Chr7 18143618 Chr4 131931 0 Translocation 0 LOC_Os07g30660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2973-S Chr7 18591314 18591326 0 0 Deletion 12 INTRON HOMO FN2973-S Chr7 22712958 22712968 0 0 Deletion 10 INTRON HET FN2973-S Chr7 24655402 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g41180 RNA-binding protein-like, putative, expressed FN2973-S Chr7 2495911 2495911 0 0 Insertion 35 downstream_gene_variant HET FN2973-S Chr7 26573216 G-A 0 0 Single Base Substitution 0 INTRON HET FN2973-S Chr7 27330236 27330252 0 0 Deletion 16 INTERGENIC HET FN2973-S Chr7 27652520 27652526 0 0 Deletion 6 INTERGENIC HET FN2973-S Chr7 29600924 G-A 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN2973-S Chr7 3137 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr8 10199585 C-A 0 0 Single Base Substitution 0 INTRON HET FN2973-S Chr8 11146268 C-T 0 0 Single Base Substitution 0 INTRON HET FN2973-S Chr8 12359800 Chr5 20684292 0 Translocation 0 FN2973-S Chr8 13807996 13807997 0 0 Deletion 1 intron_variant HET FN2973-S Chr8 24132803 G-T 0 0 Single Base Substitution 0 INTRON HET FN2973-S Chr8 25824153 25824153 0 0 Insertion 2 INTERGENIC HET FN2973-S Chr8 2607372 G-A 0 0 Single Base Substitution 0 INTRON HET FN2973-S Chr8 28412508 28412508 0 0 Insertion 88 upstream_gene_variant HET FN2973-S Chr8 3881243 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2973-S Chr8 4000676 C-T 0 0 Single Base Substitution 0 STOP_GAINED HOMO LOC_Os08g07140 transposon protein, putative, unclassified, expressed FN2973-S Chr8 4340609 4340611 0 0 Deletion 2 INTERGENIC HOMO FN2973-S Chr9 11608927 G-A 0 0 Single Base Substitution 0 INTRON HET FN2973-S Chr9 17902643 17902659 0 0 Deletion 16 upstream_gene_variant HET FN2973-S Chr9 20388264 20388279 0 0 Deletion 15 upstream_gene_variant HET