FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43400 expressed protein FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43410 CAMK_CAMK_like.9 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43420 expressed protein FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43430 expressed protein FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43440 TOO MANY MOUTHS precursor, putative, expressed FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43450 expressed protein FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43460 C4-dicarboxylate transporter/malic acid transport protein, expressed FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43470 expressed protein FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43480 AAA-type ATPase family protein, putative, expressed FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43490 polygalacturonase, putative, expressed FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43500 expressed protein FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43510 expressed protein FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43520 neutral ceramidase precursor, putative, expressed FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43530 late embryogenesis abundant protein, putative, expressed FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43540 suppressor of G2 allele of SKP1, putative, expressed FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43550 WRKY12, expressed FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43560 expressed protein FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43570 expressed protein FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43580 kinesin motor domain containing protein, putative, expressed FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43590 HSF-type DNA-binding domain containing protein, expressed FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43600 expressed protein FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43610 DUF623 domain containing protein, expressed FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43620 expressed protein FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43630 adaptin, putative, expressed FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43650 WRKY11, expressed FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43660 expressed protein FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43670 expressed protein FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43680 CPuORF29 - conserved peptide uORF-containing transcript, expressed FN2976-S Chr1 24824001 25033000 0 0 Deletion 208999 LOC_Os01g43690 expressed protein FN2976-S Chr1 24825310 25125728 0 0 Inversion 300418 FN2976-S Chr1 25036001 25102000 0 0 Deletion 65999 LOC_Os01g43690 expressed protein FN2976-S Chr1 25036001 25102000 0 0 Deletion 65999 LOC_Os01g43700 cytochrome P450 72A1, putative, expressed FN2976-S Chr1 25036001 25102000 0 0 Deletion 65999 LOC_Os01g43710 cytochrome P450 72A1, putative, expressed FN2976-S Chr1 25036001 25102000 0 0 Deletion 65999 LOC_Os01g43720 cytochrome P450 72A1, putative, expressed FN2976-S Chr1 25036001 25102000 0 0 Deletion 65999 LOC_Os01g43740 cytochrome P450 72A1, putative, expressed FN2976-S Chr1 25036001 25102000 0 0 Deletion 65999 LOC_Os01g43750 cytochrome P450 72A1, putative, expressed FN2976-S Chr1 25036001 25102000 0 0 Deletion 65999 LOC_Os01g43760 cytochrome P450 72A1, putative, expressed FN2976-S Chr1 25036001 25102000 0 0 Deletion 65999 LOC_Os01g43774 cytochrome P450 72A1, putative, expressed FN2976-S Chr1 25036001 25102000 0 0 Deletion 65999 LOC_Os01g43790 transposon protein, putative, unclassified FN2976-S Chr1 25036001 25102000 0 0 Deletion 65999 LOC_Os01g43800 retrotransposon protein, putative, unclassified, expressed FN2976-S Chr1 25119541 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g43990 expressed protein FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44000 hypothetical protein FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44010 retrotransposon protein, putative, unclassified, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44020 expressed protein FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44030 expressed protein FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44040 CAS1 domain-containing protein 1 precursor, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44050 siroheme synthase, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44069 glycerol-3-phosphate acyltransferase, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44090 X8 domain containing protein, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44100 expressed protein FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44110 serine/threonine-protein kinase, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44120 expressed protein FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44130 aspartic proteinase oryzasin-1 precursor, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44140 expressed protein FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44150 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44160 expressed protein FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44170 expressed protein FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44180 expressed protein FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44190 expressed protein FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44200 retrotransposon protein, putative, unclassified, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44210 50S ribosomal protein L31, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44220 glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44230 transcription factor X1, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44240 zinc finger, C3HC4 type domain containing protein, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44250 CBS domain containing membrane protein, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44260 dihydroflavonol-4-reductase, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44270 retrotransposon protein, putative, unclassified, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44290 expressed protein FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44310 dnaJ domain containing protein, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44320 expressed protein FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44330 laccase precursor protein, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44340 pectinesterase, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44350 expressed protein FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44360 CBS domain containing membrane protein, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44370 MYB family transcription factor, putative FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44380 hypothetical protein FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44390 MYB family transcription factor, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44394 mitotic checkpoint protein, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44430 retrotransposon protein, putative, unclassified, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44940 expressed protein FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44950 AMP-binding enzyme, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44960 hydrolase, alpha/beta fold family domain containing protein, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44970 polygalacturonase, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44980 peptide deformylase, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g44990 ercc6 protein, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g45000 expressed protein FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g45010 expressed protein FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g45020 F-box protein interaction domain containing protein, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g45030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g45040 Leucine rich repeat N-terminal domain containing protein, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g45050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g45060 polygalacturonase, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g45070 peptide deformylase, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g45080 expressed protein FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g45090 MYB family transcription factor, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g45100 retrotransposon protein, putative, unclassified, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g45110 anthocyanin 3-O-beta-glucosyltransferase, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g45120 expressed protein FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g45130 hypothetical protein FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g45140 anthocyanin 3-O-beta-glucosyltransferase, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g45150 expressed protein FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g45160 expressed protein FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g45174 transposon protein, putative, unclassified, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g45190 DEAD-box ATP-dependent RNA helicase, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g45200 cinnamoyl-CoA reductase-related, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g45210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g45220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g45250 DUF1645 domain containing protein, putative, expressed FN2976-S Chr1 25203001 25690000 0 0 Deletion 486999 LOC_Os01g47650 vacuolar protein sorting-associated protein 16, putative, expressed FN2976-S Chr1 25601181 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2976-S Chr1 29501608 G-T 0 0 Single Base Substitution 0 INTRON HET FN2976-S Chr1 30547773 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr1 33781930 33926453 0 0 Inversion 144523 FN2976-S Chr1 33786001 33846000 0 0 Deletion 59999 LOC_Os01g58450 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2976-S Chr1 33786001 33846000 0 0 Deletion 59999 LOC_Os01g58459 expressed protein FN2976-S Chr1 33786001 33846000 0 0 Deletion 59999 LOC_Os01g58470 expressed protein FN2976-S Chr1 33786001 33846000 0 0 Deletion 59999 LOC_Os01g58480 expressed protein FN2976-S Chr1 33786001 33846000 0 0 Deletion 59999 LOC_Os01g58490 expressed protein FN2976-S Chr1 33786001 33846000 0 0 Deletion 59999 LOC_Os01g58500 expressed protein FN2976-S Chr1 33786001 33846000 0 0 Deletion 59999 LOC_Os01g58510 NB-ARC domain containing protein, expressed FN2976-S Chr1 33786001 33846000 0 0 Deletion 59999 LOC_Os01g58520 disease resistance protein, putative, expressed FN2976-S Chr1 33786001 33846000 0 0 Deletion 59999 LOC_Os01g58530 NB-ARC/LRR disease resistance protein, putative, expressed FN2976-S Chr1 33786001 33846000 0 0 Deletion 59999 LOC_Os01g58540 expressed protein FN2976-S Chr1 33786001 33846000 0 0 Deletion 59999 LOC_Os01g58550 methyladenine glycosylase, putative, expressed FN2976-S Chr1 33786001 33846000 0 0 Deletion 59999 LOC_Os01g59220 retrotransposon protein, putative, unclassified, expressed FN2976-S Chr1 34073213 34073215 0 0 Deletion 2 INTERGENIC HET FN2976-S Chr1 34316982 34316994 0 0 Deletion 12 INTERGENIC HET FN2976-S Chr1 39162934 G-A 0 0 Single Base Substitution 0 INTRON HET FN2976-S Chr1 40234506 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr10 12476285 12476290 0 0 Deletion 5 FRAME_SHIFT HET LOC_Os10g24350 transposon protein, putative, unclassified, expressed FN2976-S Chr10 16180635 16180648 0 0 Deletion 13 INTERGENIC HET FN2976-S Chr10 21685716 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr10 3667063 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr10 4110545 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr10 7000089 7000089 0 0 Insertion 85 intron_variant HET FN2976-S Chr10 8413658 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g16880 retrotransposon protein, putative, unclassified, expressed FN2976-S Chr10 8933068 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr10 9318287 9318289 0 0 Deletion 2 INTERGENIC HET FN2976-S Chr11 11533296 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr11 14907398 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr11 20441738 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2976-S Chr11 5693388 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr11 8340887 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr12 12054206 12054206 0 0 Insertion 1 intergenic_region HET FN2976-S Chr12 18255869 18255869 0 0 Insertion 1 upstream_gene_variant HET FN2976-S Chr12 19099706 19099706 0 0 Insertion 1 upstream_gene_variant HET FN2976-S Chr12 19312845 19312849 0 0 Deletion 4 INTERGENIC HET FN2976-S Chr12 19755833 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g32710 NB-ARC domain containing protein, expressed FN2976-S Chr12 22794594 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr12 23556428 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g38400 MYB family transcription factor, putative, expressed FN2976-S Chr12 25306611 C-T 0 0 Single Base Substitution 0 INTRON HET FN2976-S Chr12 26523896 26523904 0 0 Deletion 8 INTERGENIC HET FN2976-S Chr12 7520493 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2976-S Chr2 10468250 10468250 0 0 Insertion 1 INTRON HET FN2976-S Chr2 11342559 T-C 0 0 Single Base Substitution 0 INTRON HET FN2976-S Chr2 11617149 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2976-S Chr2 14074470 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os02g24270 retrotransposon protein, putative, unclassified, expressed FN2976-S Chr2 15369919 C-T 0 0 Single Base Substitution 0 INTRON HET FN2976-S Chr2 16434103 16434104 0 0 Deletion 1 frameshift_variant HET LOC_Os02g27750 transposon protein, putative, unclassified, expressed FN2976-S Chr2 19514001 19605000 0 0 Deletion 90999 LOC_Os02g32870 retrotransposon protein, putative, unclassified, expressed FN2976-S Chr2 19514001 19605000 0 0 Deletion 90999 LOC_Os02g32880 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2976-S Chr2 19514001 19605000 0 0 Deletion 90999 LOC_Os02g32890 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2976-S Chr2 19514001 19605000 0 0 Deletion 90999 LOC_Os02g32900 expressed protein FN2976-S Chr2 19514001 19605000 0 0 Deletion 90999 LOC_Os02g32910 retrotransposon protein, putative, unclassified, expressed FN2976-S Chr2 19514001 19605000 0 0 Deletion 90999 LOC_Os02g32920 expressed protein FN2976-S Chr2 19514001 19605000 0 0 Deletion 90999 LOC_Os02g32930 bile acid sodium symporter, putative, expressed FN2976-S Chr2 19514001 19605000 0 0 Deletion 90999 LOC_Os02g32940 expressed protein FN2976-S Chr2 19514001 19605000 0 0 Deletion 90999 LOC_Os02g32950 RCN2 Centroradialis-like1 homologous to TFL1 gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed FN2976-S Chr2 19514001 19605000 0 0 Deletion 90999 LOC_Os02g32960 expressed protein FN2976-S Chr2 19514001 19605000 0 0 Deletion 90999 LOC_Os02g32970 hydrolase, alpha/beta fold family protein, putative, expressed FN2976-S Chr2 19514001 19605000 0 0 Deletion 90999 LOC_Os02g32980 Cupin domain containing protein, expressed FN2976-S Chr2 19518604 19518604 0 0 Insertion 1 upstream_gene_variant HET FN2976-S Chr2 19610001 19680000 0 0 Deletion 69999 LOC_Os02g33000 glycosyl hydrolases family 17, putative, expressed FN2976-S Chr2 19610001 19680000 0 0 Deletion 69999 LOC_Os02g33010 expressed protein FN2976-S Chr2 19610001 19680000 0 0 Deletion 69999 LOC_Os02g33020 SOUL heme-binding protein, putative, expressed FN2976-S Chr2 19610001 19680000 0 0 Deletion 69999 LOC_Os02g33030 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed FN2976-S Chr2 19610001 19680000 0 0 Deletion 69999 LOC_Os02g33040 expressed protein FN2976-S Chr2 19610001 19680000 0 0 Deletion 69999 LOC_Os02g33050 expressed protein FN2976-S Chr2 19610001 19680000 0 0 Deletion 69999 LOC_Os02g33060 expressed protein FN2976-S Chr2 19610001 19680000 0 0 Deletion 69999 LOC_Os02g33070 expressed protein FN2976-S Chr2 19610001 19680000 0 0 Deletion 69999 LOC_Os02g33080 N-carbamoylputrescine amidase, putative, expressed FN2976-S Chr2 19610001 19680000 0 0 Deletion 69999 LOC_Os02g33090 expressed protein FN2976-S Chr2 19610001 19680000 0 0 Deletion 69999 LOC_Os02g33100 expressed protein FN2976-S Chr2 19610001 19680000 0 0 Deletion 69999 LOC_Os02g33110 glycosyl hydrolases, putative, expressed FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33120 expressed protein FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33130 pectinesterase inhibitor domain containing protein, putative, expressed FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33140 ribosomal protein, putative, expressed FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33149 OR, putative, expressed FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33160 transposon protein, putative, unclassified, expressed FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33170 POEI29 - Pollen Ole e I allergen and extensin family protein precursor, putative, expressed FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33180 rar1, putative, expressed FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33190 retrotransposon protein, putative, unclassified, expressed FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33200 retrotransposon protein, putative, unclassified, expressed FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33210 retrotransposon protein, putative, unclassified, expressed FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33220 diap1 protein, putative, expressed FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33230 nucleoside-diphosphate-sugar epimerase, putative, expressed FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33240 OsFBX51 - F-box domain containing protein, expressed FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33250 expressed protein FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33260 retrotransposon protein, putative, unclassified, expressed FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33270 retrotransposon protein, putative, unclassified, expressed FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33280 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33290 expressed protein FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33300 expressed protein FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33310 OsFBD7 - F-box and FBD domain containing protein, expressed FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33320 RNA recognition motif containing protein, putative, expressed FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33330 expressed protein FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33335 expressed protein FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33340 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33380 pectinesterase inhibitor domain containing protein, putative, expressed FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33390 pectinesterase inhibitor domain containing protein, putative, expressed FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33400 OsFBL9 - F-box domain and LRR containing protein, expressed FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33410 expressed protein FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33420 ATPase, AAA family protein, expressed FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33430 E2F family transcription factor protein, putative, expressed FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33440 expressed protein FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33450 peroxiredoxin, putative, expressed FN2976-S Chr2 19682001 19903000 0 0 Deletion 220999 LOC_Os02g33460 transposon protein, putative, Mutator sub-class, expressed FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33500 threonyl-tRNA synthetase, putative, expressed FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33510 retrotransposon protein, putative, Ty3-gypsy subclass FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33520 retrotransposon protein, putative, unclassified, expressed FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33530 retrotransposon protein, putative, unclassified, expressed FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33540 translational activator family protein, putative, expressed FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33550 harpin-induced protein 1 domain containing protein, expressed FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33560 expressed protein FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33570 expressed protein FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33580 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33590 U-box domain-containing protein, putative, expressed FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33600 VQ domain containing protein, putative, expressed FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33610 metallo-beta-lactamase, putative, expressed FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33620 retrotransposon protein, putative, unclassified, expressed FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33630 WD domain, G-beta repeat domain containing protein, expressed FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33640 expressed protein FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33650 expressed protein FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33660 expressed protein FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33670 expressed protein FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33680 U-box domain containing protein, expressed FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33690 expressed protein FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33700 expressed protein FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33705 expressed protein FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33710 decarboxylase, putative, expressed FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33720 RING-H2 finger protein, putative, expressed FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33730 ubiquinol-cytochrome C reductase hinge protein, putative, expressed FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33740 GPI-anchored protein, putative, expressed FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33750 transposon protein, putative, unclassified, expressed FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33770 homeodomain, putative, expressed FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33780 serine-aspartate repeat-containing protein I precursor, putative, expressed FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33790 expressed protein FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33800 expressed protein FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33810 expressed protein FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33820 abscisic stress-ripening, putative, expressed FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33830 expressed protein FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33840 OsFBX52 - F-box domain containing protein, expressed FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33850 elongation factor Tu family protein, putative, expressed FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33860 WD domain, G-beta repeat domain containing protein, expressed FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33890 expressed protein FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33900 transposon protein, putative, unclassified, expressed FN2976-S Chr2 19912001 20205000 0 0 Deletion 292999 LOC_Os02g33910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2976-S Chr2 20213001 20289000 0 0 Deletion 75999 LOC_Os02g33920 transposon protein, putative, unclassified FN2976-S Chr2 20213001 20289000 0 0 Deletion 75999 LOC_Os02g33930 expressed protein FN2976-S Chr2 20213001 20289000 0 0 Deletion 75999 LOC_Os02g33944 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2976-S Chr2 20213001 20289000 0 0 Deletion 75999 LOC_Os02g33960 retrotransposon protein, putative, Ty1-copia subclass FN2976-S Chr2 20213001 20289000 0 0 Deletion 75999 LOC_Os02g33970 retrotransposon protein, putative, Ty1-copia subclass FN2976-S Chr2 20213001 20289000 0 0 Deletion 75999 LOC_Os02g33980 expressed protein FN2976-S Chr2 20213001 20289000 0 0 Deletion 75999 LOC_Os02g33990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2976-S Chr2 20213001 20289000 0 0 Deletion 75999 LOC_Os02g34000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2976-S Chr2 20294001 20505000 0 0 Deletion 210999 LOC_Os02g34010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2976-S Chr2 20294001 20505000 0 0 Deletion 210999 LOC_Os02g34020 transposon protein, putative, CACTA, En/Spm sub-class FN2976-S Chr2 20294001 20505000 0 0 Deletion 210999 LOC_Os02g34030 retrotransposon protein, putative, unclassified, expressed FN2976-S Chr2 20294001 20505000 0 0 Deletion 210999 LOC_Os02g34040 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2976-S Chr2 20294001 20505000 0 0 Deletion 210999 LOC_Os02g34060 expressed protein FN2976-S Chr2 20294001 20505000 0 0 Deletion 210999 LOC_Os02g34070 expressed protein FN2976-S Chr2 20294001 20505000 0 0 Deletion 210999 LOC_Os02g34090 expressed protein FN2976-S Chr2 20294001 20505000 0 0 Deletion 210999 LOC_Os02g34100 hypothetical protein FN2976-S Chr2 20294001 20505000 0 0 Deletion 210999 LOC_Os02g34120 expressed protein FN2976-S Chr2 20294001 20505000 0 0 Deletion 210999 LOC_Os02g34130 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2976-S Chr2 20294001 20505000 0 0 Deletion 210999 LOC_Os02g34140 expressed protein FN2976-S Chr2 20294001 20505000 0 0 Deletion 210999 LOC_Os02g34150 hypothetical protein FN2976-S Chr2 20294001 20505000 0 0 Deletion 210999 LOC_Os02g34160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2976-S Chr2 20294001 20505000 0 0 Deletion 210999 LOC_Os02g34170 transposon protein, putative, unclassified, expressed FN2976-S Chr2 20294001 20505000 0 0 Deletion 210999 LOC_Os02g34180 transposon protein, putative, unclassified, expressed FN2976-S Chr2 20294001 20505000 0 0 Deletion 210999 LOC_Os02g34190 expressed protein FN2976-S Chr2 20294001 20505000 0 0 Deletion 210999 LOC_Os02g34200 transposon protein, putative, CACTA, En/Spm sub-class FN2976-S Chr2 20294001 20505000 0 0 Deletion 210999 LOC_Os02g34210 hypothetical protein FN2976-S Chr2 20294001 20505000 0 0 Deletion 210999 LOC_Os02g34220 expressed protein FN2976-S Chr2 20294001 20505000 0 0 Deletion 210999 LOC_Os02g34240 transposon protein, putative, unclassified FN2976-S Chr2 20294001 20505000 0 0 Deletion 210999 LOC_Os02g34250 expressed protein FN2976-S Chr2 20294001 20505000 0 0 Deletion 210999 LOC_Os02g34260 AP2 domain containing protein, expressed FN2976-S Chr2 20294001 20505000 0 0 Deletion 210999 LOC_Os02g34270 AP2 domain containing protein, expressed FN2976-S Chr2 22420096 22420098 0 0 Deletion 2 INTERGENIC HET FN2976-S Chr2 25054956 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2976-S Chr2 25544498 A-T 0 0 Single Base Substitution 0 INTRON HET FN2976-S Chr2 26900677 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2976-S Chr2 29564291 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr2 31963575 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr2 32086053 32086055 0 0 Deletion 2 INTERGENIC HET FN2976-S Chr2 35073305 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr2 5434862 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g10340 retrotransposon protein, putative, unclassified, expressed FN2976-S Chr3 11475167 11475168 0 0 Deletion 1 INTRON HET FN2976-S Chr3 14769442 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr3 18125984 18125988 0 0 Deletion 4 intron_variant HET FN2976-S Chr3 33512119 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2976-S Chr3 8081706 8081734 0 0 Deletion 28 INTERGENIC HET FN2976-S Chr4 1453867 1453867 0 0 Insertion 6 upstream_gene_variant HET FN2976-S Chr4 1671003 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr4 19146627 Chr3 17621955 0 Translocation 0 FN2976-S Chr4 25287148 25287149 0 0 Deletion 1 upstream_gene_variant HET FN2976-S Chr4 25641322 G-T 0 0 Single Base Substitution 0 INTRON HET FN2976-S Chr4 28688777 28688915 0 0 Inversion 138 FN2976-S Chr4 30287006 Chr3 744330 0 Translocation 0 LOC_Os03g02230 expressed protein FN2976-S Chr4 8018093 8018095 0 0 Deletion 2 FRAME_SHIFT HOMO LOC_Os04g14304 OsWAK30/31 - OsWAK receptor-like protein OsWAK-RLP, expressed FN2976-S Chr5 16972535 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2976-S Chr5 271877 T-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os05g01470 methionine S-methyltransferase, putative, expressed FN2976-S Chr5 3367296 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr5 3852005 3852007 0 0 Deletion 2 INTERGENIC HET FN2976-S Chr5 9381874 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr6 18041867 18041867 0 0 Insertion 1 downstream_gene_variant HET FN2976-S Chr6 24864633 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2976-S Chr6 25423317 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr6 27084456 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr6 27349317 27349318 0 0 Deletion 1 INTERGENIC HET FN2976-S Chr6 29630642 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g48940 GHMP kinases ATP-binding protein, putative, expressed FN2976-S Chr7 16643195 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr7 16665498 16665501 0 0 Deletion 3 STOP_GAINED+CODON_CHANGE_PLUS_CODON_DELETION HET LOC_Os07g28470 coiled-coil domain-containing protein 111, putative, expressed FN2976-S Chr7 24005581 24005582 0 0 Deletion 1 INTERGENIC HET FN2976-S Chr7 305429 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr7 9186663 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr8 12101224 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr8 13398109 13398111 0 0 Deletion 2 INTRON HET FN2976-S Chr8 15465978 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr8 16455893 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr8 18748615 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr8 26023826 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr8 27061008 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr8 28038340 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr8 5935232 5935233 0 0 Deletion 1 downstream_gene_variant HET FN2976-S Chr8 6324712 6324723 0 0 Deletion 11 upstream_gene_variant HET FN2976-S Chr9 11069339 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2976-S Chr9 16920196 16933278 0 0 Inversion 13082 LOC_Os09g27810 retrotransposon protein, putative, unclassified FN2976-S Chr9 16920221 16934633 0 0 Inversion 14412 LOC_Os09g27810 retrotransposon protein, putative, unclassified FN2976-S Chr9 16920221 16934633 0 0 Inversion 14412 LOC_Os09g27830 OsPDIL2-3 protein disulfide isomerase PDIL2-3, expressed FN2976-S Chr9 16933291 Chr1 33926482 0 Translocation 0 FN2976-S Chr9 16934620 Chr1 33878053 0 Translocation 0 LOC_Os09g27830 OsPDIL2-3 protein disulfide isomerase PDIL2-3, expressed FN2976-S Chr9 16935263 A-T 0 0 Single Base Substitution 0 INTRON HET FN2976-S Chr9 9271631 G-A 0 0 Single Base Substitution 0 INTERGENIC HET