FN2979-S Chr1 11401812 11401812 0 0 Insertion 74 upstream_gene_variant HET FN2979-S Chr1 14025948 14025949 0 0 Deletion 1 upstream_gene_variant HET FN2979-S Chr1 14234779 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2979-S Chr1 25212863 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2979-S Chr1 26654489 26654497 0 0 Deletion 8 INTRON HET FN2979-S Chr1 26943148 26943150 0 0 Deletion 2 upstream_gene_variant HET FN2979-S Chr1 2855673 2855679 0 0 Deletion 6 downstream_gene_variant HET FN2979-S Chr1 29332721 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g51060 hydrolase, putative, expressed FN2979-S Chr1 30358655 30358656 0 0 Deletion 1 upstream_gene_variant HET FN2979-S Chr1 32174968 32174968 0 0 Insertion 55 5_prime_UTR_variant HET FN2979-S Chr1 37285504 37285505 0 0 Deletion 1 upstream_gene_variant HET FN2979-S Chr1 38308001 38384000 0 0 Deletion 75999 LOC_Os01g66020 protein kinase family protein, putative, expressed FN2979-S Chr1 38308001 38384000 0 0 Deletion 75999 LOC_Os01g66030 OsMADS2 - MADS-box family gene with MIKCc type-box, expressed FN2979-S Chr1 38308001 38384000 0 0 Deletion 75999 LOC_Os01g66040 receptor kinase, putative, expressed FN2979-S Chr1 38308001 38384000 0 0 Deletion 75999 LOC_Os01g66050 wound-responsive family protein, putative, expressed FN2979-S Chr1 38308001 38384000 0 0 Deletion 75999 LOC_Os01g66060 expressed protein FN2979-S Chr1 38308001 38384000 0 0 Deletion 75999 LOC_Os01g66070 PHD-finger domain containing protein, putative FN2979-S Chr1 38308001 38384000 0 0 Deletion 75999 LOC_Os01g66080 retrotransposon protein, putative, unclassified, expressed FN2979-S Chr1 38308001 38384000 0 0 Deletion 75999 LOC_Os01g66090 retrotransposon protein, putative, unclassified, expressed FN2979-S Chr1 38308001 38384000 0 0 Deletion 75999 LOC_Os01g66100 gibberellin 20 oxidase 2, putative, expressed FN2979-S Chr1 38308001 38384000 0 0 Deletion 75999 LOC_Os01g66250 S-locus-like receptor protein kinase, putative, expressed FN2979-S Chr1 38520001 38629000 0 0 Deletion 108999 LOC_Os01g66330 ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed FN2979-S Chr1 38520001 38629000 0 0 Deletion 108999 LOC_Os01g66340 expressed protein FN2979-S Chr1 38520001 38629000 0 0 Deletion 108999 LOC_Os01g66350 DUF647 domain containing protein, putative, expressed FN2979-S Chr1 38520001 38629000 0 0 Deletion 108999 LOC_Os01g66360 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, putative, expressed FN2979-S Chr1 38520001 38629000 0 0 Deletion 108999 LOC_Os01g66379 expressed protein FN2979-S Chr1 38520001 38629000 0 0 Deletion 108999 LOC_Os01g66400 expressed protein FN2979-S Chr1 38520001 38629000 0 0 Deletion 108999 LOC_Os01g66410 expressed protein FN2979-S Chr1 38520001 38629000 0 0 Deletion 108999 LOC_Os01g66420 PHD finger protein, putative, expressed FN2979-S Chr1 38520001 38629000 0 0 Deletion 108999 LOC_Os01g66440 expressed protein FN2979-S Chr1 38520001 38629000 0 0 Deletion 108999 LOC_Os01g66450 retrotransposon protein, putative, unclassified, expressed FN2979-S Chr1 38520001 38629000 0 0 Deletion 108999 LOC_Os01g66460 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2979-S Chr1 38520001 38629000 0 0 Deletion 108999 LOC_Os01g66470 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2979-S Chr1 38520001 38629000 0 0 Deletion 108999 LOC_Os01g66480 expressed protein FN2979-S Chr1 38520001 38629000 0 0 Deletion 108999 LOC_Os01g66490 no apical meristem protein, putative, expressed FN2979-S Chr1 38520001 38629000 0 0 Deletion 108999 LOC_Os01g66500 phosphoribosylformylglycinamidine synthase, putative, expressed FN2979-S Chr1 38520001 38629000 0 0 Deletion 108999 LOC_Os01g66510 MLO domain containing protein, putative, expressed FN2979-S Chr1 38520001 38629000 0 0 Deletion 108999 LOC_Os01g66640 S-domain receptor-like protein kinase, putative, expressed FN2979-S Chr1 40720841 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2979-S Chr1 43086201 43086202 0 0 Deletion 1 frameshift_variant HET LOC_Os01g74390 transposon protein, putative, unclassified FN2979-S Chr1 7123120 G-A 0 0 Single Base Substitution 0 INTRON HET FN2979-S Chr1 8318156 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2979-S Chr10 14029603 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2979-S Chr10 21842335 21842335 0 0 Insertion 1 upstream_gene_variant HET FN2979-S Chr10 3723801 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2979-S Chr10 6964186 6964196 0 0 Deletion 10 upstream_gene_variant HET FN2979-S Chr10 6988136 6988137 0 0 Deletion 1 upstream_gene_variant HET FN2979-S Chr10 8645288 8645291 0 0 Deletion 3 upstream_gene_variant HET FN2979-S Chr10 8728114 8728115 0 0 Deletion 1 upstream_gene_variant HET FN2979-S Chr11 13426060 13426061 0 0 Deletion 1 intron_variant HET FN2979-S Chr11 21952848 21952849 0 0 Deletion 1 frameshift_variant HET LOC_Os11g37180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2979-S Chr11 22690016 Chr3 11914698 0 Translocation 0 FN2979-S Chr11 23637084 23637084 0 0 Insertion 1 downstream_gene_variant HET FN2979-S Chr11 23816458 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2979-S Chr11 26207283 Chr2 30805326 0 Translocation 0 FN2979-S Chr11 26250630 26250630 0 0 Insertion 1 frameshift_variant HET LOC_Os11g43470 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2979-S Chr11 26982428 Chr6 23272910 0 Translocation 0 FN2979-S Chr11 2970060 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2979-S Chr11 6137372 6137372 0 0 Insertion 2 downstream_gene_variant HET FN2979-S Chr11 6920482 Chr2 33036911 0 Translocation 0 FN2979-S Chr11 9104310 9104310 0 0 Insertion 1 upstream_gene_variant HET FN2979-S Chr11 9355144 9355145 0 0 Deletion 1 upstream_gene_variant HET FN2979-S Chr12 10993319 10993324 0 0 Deletion 5 downstream_gene_variant HET FN2979-S Chr12 13966876 Chr2 6928695 0 Translocation 0 FN2979-S Chr12 17164740 17164740 0 0 Insertion 1 upstream_gene_variant HET FN2979-S Chr12 18092712 18092712 0 0 Insertion 4 downstream_gene_variant HET FN2979-S Chr12 18817390 18817390 0 0 Insertion 1 upstream_gene_variant HET FN2979-S Chr12 22243474 22243474 0 0 Insertion 1 upstream_gene_variant HET FN2979-S Chr12 26149614 Chr7 8252837 0 Translocation 0 FN2979-S Chr12 6981581 Chr3 2404419 0 Translocation 0 LOC_Os12g12664 expressed protein FN2979-S Chr2 15080474 15080475 0 0 Deletion 1 upstream_gene_variant HET FN2979-S Chr2 26095772 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2979-S Chr2 26912952 26912952 0 0 Insertion 40 upstream_gene_variant HET FN2979-S Chr2 3598467 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2979-S Chr2 369407 369408 0 0 Deletion 1 upstream_gene_variant HET FN2979-S Chr2 5705371 5705371 0 0 Insertion 9 upstream_gene_variant HET FN2979-S Chr3 19567719 19568029 0 0 Deletion 310 downstream_gene_variant HET FN2979-S Chr3 22210728 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2979-S Chr3 25386524 Chr1 15783886 0 Translocation 0 FN2979-S Chr3 26739672 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2979-S Chr3 29252770 29252770 0 0 Insertion 2 INTERGENIC HET FN2979-S Chr3 29762044 Chr1 9051713 0 Translocation 0 FN2979-S Chr3 35232627 35232631 0 0 Deletion 4 downstream_gene_variant HET FN2979-S Chr3 8256556 Chr2 33465394 0 Translocation 0 FN2979-S Chr3 9417001 9439000 0 0 Deletion 21999 LOC_Os03g16950 cysteine-rich repeat secretory protein 55 precursor, putative, expressed FN2979-S Chr3 9417001 9439000 0 0 Deletion 21999 LOC_Os03g16960 cysteine-rich repeat secretory protein 55 precursor, putative, expressed FN2979-S Chr3 9417001 9439000 0 0 Deletion 21999 LOC_Os03g16970 expressed protein FN2979-S Chr3 9417001 9439000 0 0 Deletion 21999 LOC_Os03g16980 NAD dependent epimerase/dehydratase family domain containing protein, expressed FN2979-S Chr3 9417001 9439000 0 0 Deletion 21999 LOC_Os03g17580 ribosomal protein L10, putative, expressed FN2979-S Chr4 18278912 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2979-S Chr4 20493803 20494700 0 0 Inversion 897 FN2979-S Chr4 2349290 2349290 0 0 Insertion 1 frameshift_variant HET LOC_Os04g04880 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2979-S Chr4 24131102 Chr3 29024171 0 Translocation 0 FN2979-S Chr4 24131112 Chr3 29024165 0 Translocation 0 FN2979-S Chr4 25300817 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2979-S Chr4 26597673 26597673 0 0 Insertion 1 upstream_gene_variant HET FN2979-S Chr4 4431807 4431807 0 0 Insertion 1 upstream_gene_variant HET FN2979-S Chr4 8198114 8198115 0 0 Deletion 1 upstream_gene_variant HET FN2979-S Chr5 12131073 12131074 0 0 Deletion 1 upstream_gene_variant HET FN2979-S Chr5 12661867 12661874 0 0 Deletion 7 upstream_gene_variant HET FN2979-S Chr5 13439091 13439092 0 0 Deletion 1 INTERGENIC HOMO FN2979-S Chr5 13513211 13513213 0 0 Deletion 2 INTERGENIC HOMO FN2979-S Chr5 15279212 15279213 0 0 Deletion 1 downstream_gene_variant HET FN2979-S Chr5 21366108 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2979-S Chr5 21366109 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2979-S Chr5 26109001 26121000 0 0 Deletion 11999 LOC_Os05g44930 receptor-like protein kinase, putative, expressed FN2979-S Chr5 26109001 26121000 0 0 Deletion 11999 LOC_Os05g44940 protein kinase domain containing protein, expressed FN2979-S Chr5 26109001 26121000 0 0 Deletion 11999 LOC_Os05g45700 expressed protein FN2979-S Chr5 27954334 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2979-S Chr5 7681571 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2979-S Chr5 7870001 7891000 0 0 Deletion 20999 LOC_Os05g14090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2979-S Chr5 7870001 7891000 0 0 Deletion 20999 LOC_Os05g14100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2979-S Chr5 7870001 7891000 0 0 Deletion 20999 LOC_Os05g14110 retrotransposon protein, putative, unclassified, expressed FN2979-S Chr5 7870001 7891000 0 0 Deletion 20999 LOC_Os05g14120 retrotransposon protein, putative, unclassified, expressed FN2979-S Chr5 8986500 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN2979-S Chr6 10638976 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2979-S Chr6 21857776 21857776 0 0 Insertion 2 upstream_gene_variant HET FN2979-S Chr6 21995472 21995472 0 0 Insertion 1 upstream_gene_variant HET FN2979-S Chr6 22931000 22931000 0 0 Insertion 2 upstream_gene_variant HET FN2979-S Chr6 23065808 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2979-S Chr6 29170169 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2979-S Chr6 29675379 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2979-S Chr6 75847 75847 0 0 Insertion 1 intergenic_region HET FN2979-S Chr6 9968314 9968314 0 0 Insertion 1 upstream_gene_variant HET FN2979-S Chr7 13011349 13188326 0 0 Inversion 176977 LOC_Os07g23400 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2979-S Chr7 13011356 13188328 0 0 Inversion 176972 LOC_Os07g23400 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2979-S Chr7 13291001 13308000 0 0 Deletion 16999 LOC_Os07g23530 hypothetical protein FN2979-S Chr7 13291001 13308000 0 0 Deletion 16999 LOC_Os07g23540 retrotransposon protein, putative, unclassified, expressed FN2979-S Chr7 13291001 13308000 0 0 Deletion 16999 LOC_Os07g23630 transposon protein, putative, CACTA, En/Spm sub-class FN2979-S Chr7 16690877 16690877 0 0 Insertion 3 upstream_gene_variant HET FN2979-S Chr7 21097155 21097155 0 0 Insertion 3 upstream_gene_variant HET FN2979-S Chr7 27681230 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2979-S Chr7 28611150 28611150 0 0 Insertion 1 upstream_gene_variant HET FN2979-S Chr8 13069112 Chr5 5933479 0 Translocation 0 FN2979-S Chr8 16861603 16861603 0 0 Insertion 120 upstream_gene_variant HET FN2979-S Chr8 17044703 17044706 0 0 Deletion 3 upstream_gene_variant HET FN2979-S Chr8 18146954 18146955 0 0 Deletion 1 upstream_gene_variant HET FN2979-S Chr8 22791197 22791197 0 0 Insertion 1 downstream_gene_variant HET FN2979-S Chr8 23204111 Chr2 34492399 0 Translocation 0 FN2979-S Chr8 5507932 5507934 0 0 Deletion 2 upstream_gene_variant HET FN2979-S Chr8 6385387 6385387 0 0 Insertion 1 downstream_gene_variant HET FN2979-S Chr8 9568995 9568995 0 0 Insertion 1 downstream_gene_variant HET FN2979-S Chr9 11860552 11860554 0 0 Deletion 2 frameshift_variant HET LOC_Os09g19810 retrotransposon protein, putative, unclassified, expressed FN2979-S Chr9 13074080 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2979-S Chr9 17275009 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2979-S Chr9 7477506 C-A 0 0 Single Base Substitution 0 INTRON HET FN2979-S Chr9 7804136 7804137 0 0 Deletion 1 downstream_gene_variant HET FN2979-S Chr9 7928903 A-T 0 0 Single Base Substitution 0 INTRON HET