FN2986-S Chr1 10729835 10729835 0 0 Insertion 1 upstream_gene_variant HET FN2986-S Chr1 12446118 12446133 0 0 Deletion 15 disruptive_inframe_deletion HET LOC_Os01g22150 transposon protein, putative, CACTA, En/Spm sub-class FN2986-S Chr1 13967353 13967354 0 0 Deletion 1 intron_variant HET FN2986-S Chr1 22155551 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g39370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2986-S Chr1 24750101 24750112 0 0 Deletion 11 upstream_gene_variant HET FN2986-S Chr1 29698811 29698811 0 0 Insertion 1 downstream_gene_variant HET FN2986-S Chr1 30411004 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2986-S Chr1 33602931 C-T 0 0 Single Base Substitution 0 INTRON HET FN2986-S Chr1 33964290 33964291 0 0 Deletion 1 upstream_gene_variant HET FN2986-S Chr1 36599907 36599913 0 0 Deletion 6 inframe_deletion HET LOC_Os01g63150 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2986-S Chr1 38869536 38869556 0 0 Deletion 20 downstream_gene_variant HET FN2986-S Chr1 38896144 A-G 0 0 Single Base Substitution 0 INTRON HET FN2986-S Chr1 5599732 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2986-S Chr1 6717477 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2986-S Chr1 8466096 8466103 0 0 Deletion 7 downstream_gene_variant HET FN2986-S Chr10 12290952 12290963 0 0 Deletion 11 upstream_gene_variant HET FN2986-S Chr10 13667605 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g26360 transposon protein, putative, unclassified, expressed FN2986-S Chr10 15254659 15254660 0 0 Deletion 1 upstream_gene_variant HET FN2986-S Chr10 21062114 21062114 0 0 Insertion 1 upstream_gene_variant HET FN2986-S Chr10 22785592 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2986-S Chr10 3607469 3607469 0 0 Insertion 1 upstream_gene_variant HET FN2986-S Chr10 4269680 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2986-S Chr10 4653582 4653582 0 0 Insertion 1 upstream_gene_variant HET FN2986-S Chr10 5955544 5955560 0 0 Deletion 16 upstream_gene_variant HET FN2986-S Chr10 700764 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g02120 retrotransposon protein, putative, unclassified, expressed FN2986-S Chr10 8214104 8214104 0 0 Insertion 1 downstream_gene_variant HET FN2986-S Chr11 11634520 Chr9 6717341 0 Translocation 0 FN2986-S Chr11 1640946 Chr6 4298291 0 Translocation 0 FN2986-S Chr11 20814650 20814650 0 0 Insertion 3 downstream_gene_variant HET FN2986-S Chr11 20864781 20864781 0 0 Insertion 2 upstream_gene_variant HET FN2986-S Chr11 21129520 21129520 0 0 Insertion 6 upstream_gene_variant HET FN2986-S Chr11 22204165 22204165 0 0 Insertion 83 upstream_gene_variant HET FN2986-S Chr11 22722918 22723009 0 0 Deletion 91 upstream_gene_variant HET FN2986-S Chr11 22782088 22782088 0 0 Insertion 32 upstream_gene_variant HET FN2986-S Chr11 24286491 24286491 0 0 Insertion 53 intergenic_region HET FN2986-S Chr11 8671480 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2986-S Chr12 15291864 15291864 0 0 Insertion 1 upstream_gene_variant HET FN2986-S Chr12 20377384 20377384 0 0 Insertion 19 downstream_gene_variant HET FN2986-S Chr12 2099745 Chr2 29749005 0 Translocation 0 FN2986-S Chr12 2100079 Chr11 11633032 0 Translocation 0 FN2986-S Chr12 21483587 21483587 0 0 Insertion 19 upstream_gene_variant HET FN2986-S Chr12 21858089 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2986-S Chr12 22891160 22891162 0 0 Deletion 2 upstream_gene_variant HET FN2986-S Chr12 25737226 25737226 0 0 Insertion 36 downstream_gene_variant HET FN2986-S Chr12 2800340 2800379 0 0 Deletion 39 intron_variant HET FN2986-S Chr12 4126421 4126423 0 0 Deletion 2 upstream_gene_variant HET FN2986-S Chr12 5274832 5274837 0 0 Deletion 5 intergenic_region HET FN2986-S Chr12 8491772 8491838 0 0 Deletion 66 downstream_gene_variant HET FN2986-S Chr12 8548657 8548657 0 0 Insertion 2 downstream_gene_variant HET FN2986-S Chr2 11823998 11824011 0 0 Deletion 13 downstream_gene_variant HET FN2986-S Chr2 12766001 12843000 0 0 Deletion 76999 LOC_Os02g21520 chalcone isomerase 3, putative, expressed FN2986-S Chr2 12766001 12843000 0 0 Deletion 76999 LOC_Os02g21530 expressed protein FN2986-S Chr2 12766001 12843000 0 0 Deletion 76999 LOC_Os02g21540 expressed protein FN2986-S Chr2 12766001 12843000 0 0 Deletion 76999 LOC_Os02g21550 flavonol synthase/flavanone 3-hydroxylase, putative, expressed FN2986-S Chr2 12766001 12843000 0 0 Deletion 76999 LOC_Os02g21560 retrotransposon protein, putative, unclassified, expressed FN2986-S Chr2 12766001 12843000 0 0 Deletion 76999 LOC_Os02g21570 expressed protein FN2986-S Chr2 12766001 12843000 0 0 Deletion 76999 LOC_Os02g21580 PPR repeat containing protein, expressed FN2986-S Chr2 12766001 12843000 0 0 Deletion 76999 LOC_Os02g21590 retrotransposon, putative, centromere-specific, expressed FN2986-S Chr2 12766001 12843000 0 0 Deletion 76999 LOC_Os02g21600 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2986-S Chr2 12766001 12843000 0 0 Deletion 76999 LOC_Os02g21610 retrotransposon protein, putative, unclassified FN2986-S Chr2 12766001 12843000 0 0 Deletion 76999 LOC_Os02g21620 retrotransposon protein, putative, unclassified, expressed FN2986-S Chr2 1378058 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2986-S Chr2 27388169 27388172 0 0 Deletion 3 CODON_DELETION HOMO LOC_Os02g45150 expressed protein FN2986-S Chr2 30256809 30256811 0 0 Deletion 2 upstream_gene_variant HET FN2986-S Chr2 34566539 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2986-S Chr2 9676554 9676554 0 0 Insertion 1 upstream_gene_variant HET FN2986-S Chr3 23394211 23394211 0 0 Insertion 1 intergenic_region HET FN2986-S Chr3 25459343 Chr2 34293880 0 Translocation 0 FN2986-S Chr3 4210497 4210520 0 0 Deletion 23 UTR_3_PRIME HET FN2986-S Chr3 6793347 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2986-S Chr3 7298755 7298755 0 0 Insertion 3 upstream_gene_variant HET FN2986-S Chr3 8280252 8280272 0 0 Deletion 20 upstream_gene_variant HET FN2986-S Chr4 10337162 10337162 0 0 Insertion 1 upstream_gene_variant HET FN2986-S Chr4 22510501 22510502 0 0 Deletion 1 intergenic_region HET FN2986-S Chr4 22669379 22669379 0 0 Insertion 1 downstream_gene_variant HET FN2986-S Chr4 2629660 2629661 0 0 Deletion 1 upstream_gene_variant HET FN2986-S Chr4 28096759 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN2986-S Chr4 28192090 28192094 0 0 Deletion 4 INTERGENIC HOMO FN2986-S Chr4 3018376 3018379 0 0 Deletion 3 upstream_gene_variant HET FN2986-S Chr4 30246420 30246424 0 0 Deletion 4 UTR_3_PRIME HOMO FN2986-S Chr4 31614849 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2986-S Chr4 3870723 3870737 0 0 Deletion 14 upstream_gene_variant HET FN2986-S Chr4 579246 579247 0 0 Deletion 1 intergenic_region HET FN2986-S Chr4 7526177 7526178 0 0 Deletion 1 downstream_gene_variant HET FN2986-S Chr4 8051948 8051948 0 0 Insertion 1 downstream_gene_variant HET FN2986-S Chr4 8197053 8197054 0 0 Deletion 1 upstream_gene_variant HET FN2986-S Chr4 9327122 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2986-S Chr5 10149790 10149790 0 0 Insertion 1 upstream_gene_variant HET FN2986-S Chr5 11553728 11553728 0 0 Insertion 1 upstream_gene_variant HET FN2986-S Chr5 8349294 Chr1 10581590 0 Translocation 0 FN2986-S Chr5 8563003 8563008 0 0 Deletion 5 upstream_gene_variant HET FN2986-S Chr5 9504842 9504843 0 0 Deletion 1 downstream_gene_variant HET FN2986-S Chr6 12547000 12547000 0 0 Insertion 1 upstream_gene_variant HET FN2986-S Chr6 1327165 1327176 0 0 Deletion 11 downstream_gene_variant HET FN2986-S Chr6 16161616 16161617 0 0 Deletion 1 upstream_gene_variant HET FN2986-S Chr6 20895445 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2986-S Chr6 20895447 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2986-S Chr6 2216295 2216295 0 0 Insertion 2 INTERGENIC HET FN2986-S Chr6 30704414 30704416 0 0 Deletion 2 upstream_gene_variant HET FN2986-S Chr6 9104204 9104217 0 0 Deletion 13 downstream_gene_variant HET FN2986-S Chr6 9896683 9896694 0 0 Deletion 11 upstream_gene_variant HET FN2986-S Chr7 12157728 12157728 0 0 Insertion 1 intergenic_region HET FN2986-S Chr7 1376123 1376127 0 0 Deletion 4 upstream_gene_variant HET FN2986-S Chr7 15091335 15091349 0 0 Deletion 14 upstream_gene_variant HET FN2986-S Chr7 17505771 T-C 0 0 Single Base Substitution 0 INTRON HET FN2986-S Chr7 25828367 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2986-S Chr7 27362691 27362698 0 0 Deletion 7 upstream_gene_variant HET FN2986-S Chr7 28646980 28646983 0 0 Deletion 3 INTERGENIC HOMO FN2986-S Chr7 401424 401425 0 0 Deletion 1 upstream_gene_variant HET FN2986-S Chr8 11680876 11680877 0 0 Deletion 1 upstream_gene_variant HET FN2986-S Chr8 13596400 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2986-S Chr8 1816990 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2986-S Chr8 19434187 Chr6 494463 0 Translocation 0 FN2986-S Chr8 27138307 27138308 0 0 Deletion 1 upstream_gene_variant HET FN2986-S Chr8 2718578 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2986-S Chr9 12612967 12612968 0 0 Deletion 1 downstream_gene_variant HET FN2986-S Chr9 17520063 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2986-S Chr9 18858498 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2986-S Chr9 20396777 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2986-S Chr9 22867317 22867318 0 0 Deletion 1 upstream_gene_variant HET FN2986-S Chr9 3086489 3086491 0 0 Deletion 2 downstream_gene_variant HET FN2986-S Chr9 319609 319609 0 0 Insertion 2 upstream_gene_variant HET FN2986-S Chr9 4802996 4802998 0 0 Deletion 2 upstream_gene_variant HET FN2986-S Chr9 4874891 4874891 0 0 Insertion 1 upstream_gene_variant HET FN2986-S Chr9 6717110 Chr2 29749009 0 Translocation 0 FN2986-S Chr9 8288596 8288634 0 0 Deletion 38 upstream_gene_variant HET FN2986-S Chr9 9149878 9251066 0 0 Inversion 101188 FN2986-S Chr9 9149920 9251085 0 0 Inversion 101165