FN2990-S Chr1 18491074 18491075 0 0 Deletion 1 downstream_gene_variant HET FN2990-S Chr1 20220161 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2990-S Chr1 38122405 38122410 0 0 Deletion 5 INTERGENIC HET FN2990-S Chr1 42242731 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN2990-S Chr10 18704607 18704608 0 0 Deletion 1 INTRON HET FN2990-S Chr10 2027363 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN2990-S Chr10 2577869 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2990-S Chr10 6884165 6884165 0 0 Insertion 2 INTERGENIC HET FN2990-S Chr11 10507936 10507937 0 0 Deletion 1 frameshift_variant HET LOC_Os11g18620 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2990-S Chr11 11769047 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2990-S Chr12 18036999 18037090 0 0 Deletion 91 downstream_gene_variant HET FN2990-S Chr12 2269355 2269364 0 0 Deletion 9 downstream_gene_variant HET FN2990-S Chr12 8580138 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2990-S Chr12 8580139 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2990-S Chr2 19053396 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2990-S Chr2 20052263 20052266 0 0 Deletion 3 INTERGENIC HET FN2990-S Chr2 22703382 22703418 0 0 Deletion 36 frameshift_variant&splice_acceptor_variant&splice_region_variant&intron_variant HET LOC_Os02g37620 transposon protein, putative, CACTA, En/Spm sub-class FN2990-S Chr2 31287287 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2990-S Chr2 31287292 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2990-S Chr2 31633991 31634005 0 0 Deletion 14 INTRON HOMO FN2990-S Chr2 32829940 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os02g53670 MYB family transcription factor, putative, expressed FN2990-S Chr2 32830517 32830529 0 0 Deletion 12 CODON_CHANGE_PLUS_CODON_DELETION HET LOC_Os02g53670 MYB family transcription factor, putative, expressed FN2990-S Chr2 33339524 33339524 0 0 Insertion 8 upstream_gene_variant HET FN2990-S Chr2 34343782 34343783 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os02g56110 AP-1 complex subunit gamma-1, putative, expressed FN2990-S Chr2 6882883 6882883 0 0 Insertion 2 upstream_gene_variant HET FN2990-S Chr3 15590401 15590421 0 0 Deletion 20 INTERGENIC HET FN2990-S Chr3 19334859 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g33850 retrotransposon protein, putative, Ty1-copia subclass FN2990-S Chr3 20810654 20810655 0 0 Deletion 1 frameshift_variant HET LOC_Os03g37500 retrotransposon protein, putative, unclassified, expressed FN2990-S Chr3 30231722 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN2990-S Chr3 32312070 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2990-S Chr3 8306710 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2990-S Chr4 10166401 10166404 0 0 Deletion 3 CODON_DELETION HOMO LOC_Os04g18410 retrotransposon protein, putative, unclassified, expressed FN2990-S Chr4 10383555 10383572 0 0 Deletion 17 upstream_gene_variant HET FN2990-S Chr4 11161 G-A 0 0 Single Base Substitution 0 INTRON HET FN2990-S Chr4 11276116 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN2990-S Chr4 11315442 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2990-S Chr4 11762406 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2990-S Chr4 16011404 16011411 0 0 Deletion 7 INTRON HET FN2990-S Chr4 161685 161687 0 0 Deletion 2 INTERGENIC HET FN2990-S Chr4 17141828 17141829 0 0 Deletion 1 upstream_gene_variant HET FN2990-S Chr4 21001443 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2990-S Chr4 24123260 24123265 0 0 Deletion 5 INTERGENIC HOMO FN2990-S Chr4 2453589 2453594 0 0 Deletion 5 INTERGENIC HET FN2990-S Chr4 7631491 7631492 0 0 Deletion 1 upstream_gene_variant HET FN2990-S Chr4 9658619 9674988 0 0 Inversion 16369 LOC_Os04g17640 retrotransposon protein, putative, unclassified, expressed FN2990-S Chr5 18386840 18386846 0 0 Deletion 6 INTERGENIC HET FN2990-S Chr6 12471155 12471194 0 0 Deletion 39 upstream_gene_variant HET FN2990-S Chr6 22337468 Chr4 4257957 0 Translocation 0 LOC_Os06g37700 expressed protein FN2990-S Chr6 6051618 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2990-S Chr7 10423124 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2990-S Chr7 11702945 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2990-S Chr7 15037276 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2990-S Chr7 17070887 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os07g29160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2990-S Chr7 20922876 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2990-S Chr7 20928560 20947499 0 0 Inversion 18939 LOC_Os07g34964 TKL_IRAK_DUF26-lh.8 - DUF26 kinases have homology to DUF26 containing loci, expressed FN2990-S Chr7 20928562 20947500 0 0 Inversion 18938 LOC_Os07g34964 TKL_IRAK_DUF26-lh.8 - DUF26 kinases have homology to DUF26 containing loci, expressed FN2990-S Chr7 2463118 2463118 0 0 Insertion 1 INTERGENIC HET FN2990-S Chr8 12142592 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN2990-S Chr8 13027238 13027238 0 0 Insertion 2 downstream_gene_variant HET FN2990-S Chr8 22146025 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2990-S Chr8 23258540 23258541 0 0 Deletion 1 INTERGENIC HOMO FN2990-S Chr8 24481449 24481449 0 0 Insertion 39 upstream_gene_variant HET FN2990-S Chr9 133782 133783 0 0 Deletion 1 downstream_gene_variant HET FN2990-S Chr9 14504962 14504967 0 0 Deletion 5 upstream_gene_variant HET FN2990-S Chr9 20728418 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2990-S Chr9 20736075 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2990-S Chr9 20736076 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2990-S Chr9 22139014 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g38460 expressed protein FN2990-S Chr9 22835000 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2990-S Chr9 4339880 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN2990-S Chr9 8502861 8502861 0 0 Insertion 2 upstream_gene_variant HET FN2990-S Chr9 8877001 8926000 0 0 Deletion 48999 LOC_Os09g14890 expressed protein FN2990-S Chr9 8877001 8926000 0 0 Deletion 48999 LOC_Os09g14900 retrotransposon protein, putative, unclassified FN2990-S Chr9 8877001 8926000 0 0 Deletion 48999 LOC_Os09g14910 expressed protein FN2990-S Chr9 8877001 8926000 0 0 Deletion 48999 LOC_Os09g14920 hypothetical protein FN2990-S Chr9 8877001 8926000 0 0 Deletion 48999 LOC_Os09g14930 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2990-S Chr9 8929001 8977000 0 0 Deletion 47999 LOC_Os09g14940 retrotransposon protein, putative, Ty1-copia subclass FN2990-S Chr9 8929001 8977000 0 0 Deletion 47999 LOC_Os09g14950 expressed protein FN2990-S Chr9 8929001 8977000 0 0 Deletion 47999 LOC_Os09g14960 transposon protein, putative, Pong sub-class, expressed FN2990-S Chr9 8929001 8977000 0 0 Deletion 47999 LOC_Os09g14980 retrotransposon protein, putative, Ty3-gypsy subclass, expressed