FN2994-S Chr1 11671200 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2994-S Chr1 24186310 24186321 0 0 Deletion 11 INTERGENIC HOMO FN2994-S Chr1 24799647 25092576 0 0 Inversion 292929 FN2994-S Chr1 30210531 30210531 0 0 Insertion 128 intergenic_region HET FN2994-S Chr1 40128411 40128411 0 0 Insertion 1 upstream_gene_variant HET FN2994-S Chr1 40423363 40423363 0 0 Insertion 10 intergenic_region HET FN2994-S Chr1 41589671 41589672 0 0 Deletion 1 downstream_gene_variant HET FN2994-S Chr10 10078741 10078749 0 0 Deletion 8 upstream_gene_variant HET FN2994-S Chr10 11760185 Chr2 4884740 0 Translocation 0 FN2994-S Chr10 14869719 Chr6 16456233 0 Translocation 0 LOC_Os10g28570 expressed protein FN2994-S Chr10 14869730 Chr6 16455877 0 Translocation 0 LOC_Os10g28570 expressed protein FN2994-S Chr10 3386842 3386908 0 0 Deletion 66 intergenic_region HET FN2994-S Chr10 3860495 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g07310 retrotransposon protein, putative, unclassified, expressed FN2994-S Chr10 8094083 Chr1 24799652 0 Translocation 0 FN2994-S Chr10 8094336 Chr1 25092576 0 Translocation 0 FN2994-S Chr11 10024566 10024568 0 0 Deletion 2 intergenic_region HET FN2994-S Chr11 12328867 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2994-S Chr11 13603928 13603928 0 0 Insertion 1 upstream_gene_variant HET FN2994-S Chr11 15578672 15578672 0 0 Insertion 1 upstream_gene_variant HET FN2994-S Chr11 18176531 Chr6 10800616 0 Translocation 0 FN2994-S Chr11 25201750 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2994-S Chr11 778173 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2994-S Chr11 9056342 9056346 0 0 Deletion 4 UTR_3_PRIME HOMO FN2994-S Chr12 10306948 10306948 0 0 Insertion 1 upstream_gene_variant HET FN2994-S Chr12 11336483 11336483 0 0 Insertion 1 upstream_gene_variant HET FN2994-S Chr12 11968522 11987931 0 0 Inversion 19409 FN2994-S Chr12 12046496 12046497 0 0 Deletion 1 intergenic_region HET FN2994-S Chr12 14098149 14098150 0 0 Deletion 1 intron_variant HET FN2994-S Chr12 14281355 14281406 0 0 Deletion 51 upstream_gene_variant HET FN2994-S Chr12 16787051 16787051 0 0 Insertion 1 upstream_gene_variant HET FN2994-S Chr12 16806525 16806526 0 0 Deletion 1 upstream_gene_variant HET FN2994-S Chr12 17949649 17949649 0 0 Insertion 1 intergenic_region HET FN2994-S Chr12 17991620 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2994-S Chr12 18033436 18033437 0 0 Deletion 1 frameshift_variant HET LOC_Os12g30100 retrotransposon protein, putative, unclassified, expressed FN2994-S Chr12 21069272 21069272 0 0 Insertion 1 downstream_gene_variant HET FN2994-S Chr12 21539961 21539961 0 0 Insertion 1 upstream_gene_variant HET FN2994-S Chr12 24591182 24591186 0 0 Deletion 4 upstream_gene_variant HET FN2994-S Chr12 5600628 5600630 0 0 Deletion 2 upstream_gene_variant HET FN2994-S Chr12 9138033 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2994-S Chr2 11218045 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2994-S Chr2 14386041 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2994-S Chr2 14886599 14886600 0 0 Deletion 1 upstream_gene_variant HET FN2994-S Chr2 14923093 14923093 0 0 Insertion 1 upstream_gene_variant HET FN2994-S Chr2 15438294 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2994-S Chr2 19396931 19396932 0 0 Deletion 1 intergenic_region HET FN2994-S Chr2 21646019 21646020 0 0 Deletion 1 upstream_gene_variant HET FN2994-S Chr2 30554828 30554828 0 0 Insertion 12 disruptive_inframe_insertion HET LOC_Os02g50000 GDSL-like lipase/acylhydrolase, putative, expressed FN2994-S Chr2 33854121 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2994-S Chr2 671963 671964 0 0 Deletion 1 upstream_gene_variant HET FN2994-S Chr3 14364831 14364831 0 0 Insertion 1 intron_variant HET FN2994-S Chr3 16310097 16310098 0 0 Deletion 1 upstream_gene_variant HET FN2994-S Chr3 20625462 20625467 0 0 Deletion 5 splice_region_variant&intron_variant HET FN2994-S Chr3 22196267 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2994-S Chr3 2381430 2381430 0 0 Insertion 4 upstream_gene_variant HET FN2994-S Chr3 27219007 27219007 0 0 Insertion 1 upstream_gene_variant HET FN2994-S Chr3 29906126 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN2994-S Chr3 30745197 30745197 0 0 Insertion 76 upstream_gene_variant FN2994-S Chr3 32293001 32305000 0 0 Deletion 11999 FN2994-S Chr3 32937915 32937916 0 0 Deletion 1 upstream_gene_variant HET FN2994-S Chr3 35957212 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g63660 expressed protein FN2994-S Chr3 9227849 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2994-S Chr4 11284132 11284133 0 0 Deletion 1 INTRON HOMO FN2994-S Chr4 11756552 11756552 0 0 Insertion 1 downstream_gene_variant HET FN2994-S Chr4 14135499 14135500 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os04g24610 expressed protein FN2994-S Chr4 17329863 17329864 0 0 Deletion 1 frameshift_variant HET LOC_Os04g29224 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2994-S Chr4 2610506 2610506 0 0 Insertion 1 downstream_gene_variant HET FN2994-S Chr4 2857405 2857420 0 0 Deletion 15 upstream_gene_variant HET FN2994-S Chr4 32893831 32893832 0 0 Deletion 1 upstream_gene_variant HET FN2994-S Chr4 3365909 3365910 0 0 Deletion 1 upstream_gene_variant HET FN2994-S Chr4 8623757 8623757 0 0 Insertion 1 intron_variant HET FN2994-S Chr5 15431998 15431998 0 0 Insertion 1 upstream_gene_variant HET FN2994-S Chr5 24869300 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2994-S Chr5 682412 682413 0 0 Deletion 1 upstream_gene_variant HET FN2994-S Chr6 10986230 10986230 0 0 Insertion 1 upstream_gene_variant HET FN2994-S Chr6 11102491 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2994-S Chr6 16243273 16243273 0 0 Insertion 1 frameshift_variant HET LOC_Os06g28540 retrotransposon protein, putative, unclassified, expressed FN2994-S Chr6 19674917 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2994-S Chr6 20214162 20214164 0 0 Deletion 2 upstream_gene_variant HET FN2994-S Chr6 24163428 24163434 0 0 Deletion 6 upstream_gene_variant HET FN2994-S Chr6 25383954 25383955 0 0 Deletion 1 downstream_gene_variant HET FN2994-S Chr7 12378597 12378683 0 0 Deletion 86 upstream_gene_variant HET FN2994-S Chr7 15159569 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2994-S Chr7 17428925 T-G 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN2994-S Chr7 25595022 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2994-S Chr7 6156198 6156199 0 0 Deletion 1 splice_acceptor_variant&intron_variant HET LOC_Os07g11160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2994-S Chr7 7137963 7138056 0 0 Deletion 93 downstream_gene_variant HET FN2994-S Chr7 7930974 7930974 0 0 Insertion 4 upstream_gene_variant HET FN2994-S Chr7 8953033 8953035 0 0 Deletion 2 upstream_gene_variant HET FN2994-S Chr8 15935106 15935106 0 0 Insertion 1 upstream_gene_variant HET FN2994-S Chr8 17268779 Chr4 4103749 0 Translocation 0 LOC_Os08g28290 retrotransposon protein, putative, unclassified, expressed FN2994-S Chr8 22073984 22073985 0 0 Deletion 1 downstream_gene_variant HET FN2994-S Chr8 3429022 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2994-S Chr8 7317670 7317670 0 0 Insertion 1 upstream_gene_variant HET FN2994-S Chr9 11695318 11695322 0 0 Deletion 4 upstream_gene_variant HET FN2994-S Chr9 13032976 13032976 0 0 Insertion 1 upstream_gene_variant HET FN2994-S Chr9 13429247 13429261 0 0 Deletion 14 FRAME_SHIFT HOMO LOC_Os09g22200 transposon protein, putative, CACTA, En/Spm sub-class FN2994-S Chr9 14040682 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2994-S Chr9 14291940 14291941 0 0 Deletion 1 downstream_gene_variant HET FN2994-S Chr9 3912400 3912404 0 0 Deletion 4 upstream_gene_variant HET FN2994-S Chr9 4076991 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2994-S Chr9 5709653 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2994-S Chr9 8657453 8657463 0 0 Deletion 10 INTERGENIC HET FN2994-S Chr9 9535477 9535480 0 0 Deletion 3 upstream_gene_variant HET