FN2996-S Chr1 10794507 10794543 0 0 Deletion 36 upstream_gene_variant HET FN2996-S Chr1 13033443 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2996-S Chr1 17336129 G-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os01g31670 retrotransposon protein, putative, unclassified, expressed FN2996-S Chr1 209818 C-A 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN2996-S Chr1 22319114 22319115 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os01g39570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2996-S Chr1 32550727 32550729 0 0 Deletion 2 upstream_gene_variant HET FN2996-S Chr1 35377890 35377897 0 0 Deletion 7 INTRON HOMO FN2996-S Chr1 36869274 36869279 0 0 Deletion 5 INTERGENIC HOMO FN2996-S Chr1 43140227 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2996-S Chr1 871584 871585 0 0 Deletion 1 downstream_gene_variant HET FN2996-S Chr1 9378552 9378553 0 0 Deletion 1 upstream_gene_variant HET FN2996-S Chr10 1348075 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN2996-S Chr10 16616086 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2996-S Chr10 20534963 Chr9 7256735 0 Translocation 0 FN2996-S Chr10 21995691 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2996-S Chr10 7846918 7846919 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os10g14990 retrotransposon protein, putative, unclassified, expressed FN2996-S Chr10 9023677 9023677 0 0 Insertion 3 upstream_gene_variant HET FN2996-S Chr11 1790405 C-T 0 0 Single Base Substitution 0 INTRON HET FN2996-S Chr11 21712988 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2996-S Chr11 24873086 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g41460 retrotransposon protein, putative, unclassified, expressed FN2996-S Chr11 7559858 7559858 0 0 Insertion 6 upstream_gene_variant HET FN2996-S Chr12 12985098 12985098 0 0 Insertion 1 upstream_gene_variant HET FN2996-S Chr12 20254484 20254484 0 0 Insertion 2 upstream_gene_variant HET FN2996-S Chr12 24235487 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2996-S Chr12 9974476 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2996-S Chr2 11611663 11611663 0 0 Insertion 1 upstream_gene_variant HET FN2996-S Chr2 12308527 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2996-S Chr2 20809361 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2996-S Chr2 20810805 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2996-S Chr2 27100747 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2996-S Chr2 27910842 C-A 0 0 Single Base Substitution 0 INTRON HET FN2996-S Chr2 33227152 33227454 0 0 Inversion 302 LOC_Os02g54200 mitochondrial transcription termination factor family protein, putative, expressed FN2996-S Chr2 9680912 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2996-S Chr3 10130255 10130255 0 0 Insertion 117 intergenic_region HET FN2996-S Chr3 13372325 13372325 0 0 Insertion 1 downstream_gene_variant HET FN2996-S Chr3 15634727 15634727 0 0 Insertion 6 INTERGENIC HET FN2996-S Chr3 18343568 18343568 0 0 Insertion 4 intron_variant HET FN2996-S Chr3 22558634 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2996-S Chr3 34079610 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2996-S Chr3 36145156 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2996-S Chr3 3669986 3669986 0 0 Insertion 2 upstream_gene_variant HET FN2996-S Chr3 6642620 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2996-S Chr3 869417 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2996-S Chr4 11985397 11985397 0 0 Insertion 1 upstream_gene_variant HET FN2996-S Chr4 20306625 20306627 0 0 Deletion 2 INTERGENIC HET FN2996-S Chr4 2361885 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2996-S Chr4 27407080 27407084 0 0 Deletion 4 INTERGENIC HOMO FN2996-S Chr4 4849085 4849156 0 0 Deletion 71 upstream_gene_variant HET FN2996-S Chr5 18993354 T-C 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN2996-S Chr5 20461582 20461582 0 0 Insertion 6 upstream_gene_variant HET FN2996-S Chr5 25153590 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2996-S Chr5 26819791 26819802 0 0 Deletion 11 INTERGENIC HOMO FN2996-S Chr5 29955720 29955721 0 0 Deletion 1 intron_variant HET FN2996-S Chr5 4005251 4005253 0 0 Deletion 2 upstream_gene_variant HET FN2996-S Chr5 4523607 4523608 0 0 Deletion 1 splice_region_variant&intron_variant HET FN2996-S Chr6 10317569 10317571 0 0 Deletion 2 upstream_gene_variant HET FN2996-S Chr6 12690409 12690410 0 0 Deletion 1 INTERGENIC HOMO FN2996-S Chr6 12936862 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2996-S Chr6 17185489 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2996-S Chr6 21789993 21789993 0 0 Insertion 1 downstream_gene_variant HET FN2996-S Chr6 27131461 27131462 0 0 Deletion 1 upstream_gene_variant HET FN2996-S Chr6 29862591 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2996-S Chr7 11816198 11816199 0 0 Deletion 1 upstream_gene_variant HET FN2996-S Chr7 14138864 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2996-S Chr7 23933650 24280568 0 0 Inversion 346918 LOC_Os07g39910 pentatricopeptide repeat domain containing protein, putative, expressed FN2996-S Chr7 23933692 24280653 0 0 Inversion 346961 LOC_Os07g39910 pentatricopeptide repeat domain containing protein, putative, expressed FN2996-S Chr7 24284434 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2996-S Chr7 26355978 26355979 0 0 Deletion 1 UTR_5_PRIME HET FN2996-S Chr7 3561151 3561152 0 0 Deletion 1 UTR_3_PRIME HET FN2996-S Chr7 8271598 8271605 0 0 Deletion 7 FRAME_SHIFT HET LOC_Os07g14514 retrotransposon protein, putative, unclassified, expressed FN2996-S Chr7 8521067 8521074 0 0 Deletion 7 INTERGENIC HOMO FN2996-S Chr8 10714504 10714504 0 0 Insertion 2 upstream_gene_variant HET FN2996-S Chr8 10957962 10957974 0 0 Deletion 12 INTERGENIC HET FN2996-S Chr8 11836200 11836201 0 0 Deletion 1 downstream_gene_variant HET FN2996-S Chr8 12809026 C-T 0 0 Single Base Substitution 0 INTRON HET FN2996-S Chr8 19339992 19339992 0 0 Insertion 4 upstream_gene_variant HET FN2996-S Chr8 4900490 4900496 0 0 Deletion 6 INTERGENIC HOMO FN2996-S Chr8 5549401 Chr3 31963077 0 Translocation 0 FN2996-S Chr9 10130026 T-A 0 0 Single Base Substitution 0 INTRON HET FN2996-S Chr9 10193553 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2996-S Chr9 15874001 15896000 0 0 Deletion 21999 LOC_Os09g26280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2996-S Chr9 15874001 15896000 0 0 Deletion 21999 LOC_Os09g26290 amino acid transporter family protein, putative, expressed FN2996-S Chr9 15874001 15896000 0 0 Deletion 21999 LOC_Os09g26300 hypro1, putative, expressed FN2996-S Chr9 15874001 15896000 0 0 Deletion 21999 LOC_Os09g27170 conserved hypothetical protein FN2996-S Chr9 7692865 7692865 0 0 Insertion 1 upstream_gene_variant HET FN2996-S Chr9 9055964 9055965 0 0 Deletion 1 frameshift_variant HET LOC_Os09g15020 retrotransposon protein, putative, unclassified, expressed