FN3014-S Chr1 11717001 11732000 0 0 Deletion 14999 LOC_Os01g20990 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr1 11717001 11732000 0 0 Deletion 14999 LOC_Os01g21000 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr1 11717001 11732000 0 0 Deletion 14999 LOC_Os01g21010 expressed protein FN3014-S Chr1 12679038 12679039 0 0 Deletion 1 INTERGENIC HET FN3014-S Chr1 12687001 12823000 0 0 Deletion 135999 LOC_Os01g22600 mitochondrial carrier protein, putative, expressed FN3014-S Chr1 12687001 12823000 0 0 Deletion 135999 LOC_Os01g22620 retrotransposon protein, putative, unclassified FN3014-S Chr1 12687001 12823000 0 0 Deletion 135999 LOC_Os01g22630 ECT protein, putative, expressed FN3014-S Chr1 12687001 12823000 0 0 Deletion 135999 LOC_Os01g22640 GDSL-like lipase/acylhydrolase, putative, expressed FN3014-S Chr1 12687001 12823000 0 0 Deletion 135999 LOC_Os01g22650 expressed protein FN3014-S Chr1 12687001 12823000 0 0 Deletion 135999 LOC_Os01g22660 GDSL-like lipase/acylhydrolase, putative, expressed FN3014-S Chr1 12687001 12823000 0 0 Deletion 135999 LOC_Os01g22670 fruit bromelain precursor, putative, expressed FN3014-S Chr1 12687001 12823000 0 0 Deletion 135999 LOC_Os01g22680 fruit bromelain precursor, putative, expressed FN3014-S Chr1 12687001 12823000 0 0 Deletion 135999 LOC_Os01g22700 organic cation transporter-related, putative, expressed FN3014-S Chr1 12687001 12823000 0 0 Deletion 135999 LOC_Os01g22710 organic cation transporter-related, putative, expressed FN3014-S Chr1 12687001 12823000 0 0 Deletion 135999 LOC_Os01g22720 expressed protein FN3014-S Chr1 12687001 12823000 0 0 Deletion 135999 LOC_Os01g22730 transposon protein, putative, unclassified, expressed FN3014-S Chr1 12687001 12823000 0 0 Deletion 135999 LOC_Os01g22740 transposon protein, putative, unclassified, expressed FN3014-S Chr1 12687001 12823000 0 0 Deletion 135999 LOC_Os01g22750 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr1 12687001 12823000 0 0 Deletion 135999 LOC_Os01g22760 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr1 12687001 12823000 0 0 Deletion 135999 LOC_Os01g22770 transposon protein, putative, unclassified FN3014-S Chr1 12687001 12823000 0 0 Deletion 135999 LOC_Os01g22780 GDSL-like lipase/acylhydrolase, putative, expressed FN3014-S Chr1 12687001 12823000 0 0 Deletion 135999 LOC_Os01g22794 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr1 12687001 12823000 0 0 Deletion 135999 LOC_Os01g22810 hypothetical protein FN3014-S Chr1 12687001 12823000 0 0 Deletion 135999 LOC_Os01g22820 retrotransposon protein, putative, Ty3-gypsy subclass FN3014-S Chr1 12687001 12823000 0 0 Deletion 135999 LOC_Os01g23420 transposon protein, putative, unclassified, expressed FN3014-S Chr1 13065775 13065783 0 0 Deletion 8 INTERGENIC HET FN3014-S Chr1 13218001 13230000 0 0 Deletion 11999 LOC_Os01g23540 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr1 13218001 13230000 0 0 Deletion 11999 LOC_Os01g23550 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr1 13218001 13230000 0 0 Deletion 11999 LOC_Os01g23560 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr1 13218001 13230000 0 0 Deletion 11999 LOC_Os01g24860 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr1 13252464 13252465 0 0 Deletion 1 INTRON HOMO FN3014-S Chr1 15924001 15952000 0 0 Deletion 27999 LOC_Os01g28420 transposon protein, putative, CACTA, En/Spm sub-class FN3014-S Chr1 15924001 15952000 0 0 Deletion 27999 LOC_Os01g28440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr1 15924001 15952000 0 0 Deletion 27999 LOC_Os01g28450 SCP-like extracellular protein, expressed FN3014-S Chr1 15924001 15952000 0 0 Deletion 27999 LOC_Os01g28474 transferase family protein, putative, expressed FN3014-S Chr1 17360001 17390000 0 0 Deletion 29999 LOC_Os01g31730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr1 17360001 17390000 0 0 Deletion 29999 LOC_Os01g31740 retrotransposon protein, putative, unclassified FN3014-S Chr1 17360001 17390000 0 0 Deletion 29999 LOC_Os01g31750 transposon protein, putative, unclassified, expressed FN3014-S Chr1 17360001 17390000 0 0 Deletion 29999 LOC_Os01g31760 acyl-ACP thioesterase, putative, expressed FN3014-S Chr1 18269001 18285000 0 0 Deletion 15999 LOC_Os01g33190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr1 18269001 18285000 0 0 Deletion 15999 LOC_Os01g33204 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr1 18269001 18285000 0 0 Deletion 15999 LOC_Os01g33260 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr1 18364001 18378000 0 0 Deletion 13999 LOC_Os01g33360 DnaK family protein, putative, expressed FN3014-S Chr1 18364001 18378000 0 0 Deletion 13999 LOC_Os01g33370 zinc-binding protein, putative, expressed FN3014-S Chr1 18364001 18378000 0 0 Deletion 13999 LOC_Os01g34350 RNA-dependent RNA polymerase, putative, expressed FN3014-S Chr1 19410001 19441000 0 0 Deletion 30999 LOC_Os01g35070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr1 19410001 19441000 0 0 Deletion 30999 LOC_Os01g35080 retrotransposon protein, putative, unclassified FN3014-S Chr1 19410001 19441000 0 0 Deletion 30999 LOC_Os01g35090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr1 19410001 19441000 0 0 Deletion 30999 LOC_Os01g35100 zinc finger, C3HC4 type domain containing protein, expressed FN3014-S Chr1 19410001 19441000 0 0 Deletion 30999 LOC_Os01g35110 expressed protein FN3014-S Chr1 19410001 19441000 0 0 Deletion 30999 LOC_Os01g35120 zinc finger, C3HC4 type domain containing protein, expressed FN3014-S Chr1 19699001 19719000 0 0 Deletion 19999 LOC_Os01g35600 retrotransposon protein, putative, unclassified FN3014-S Chr1 19699001 19719000 0 0 Deletion 19999 LOC_Os01g35610 expressed protein FN3014-S Chr1 19699001 19719000 0 0 Deletion 19999 LOC_Os01g35620 retrotransposon protein, putative, unclassified FN3014-S Chr1 19699001 19719000 0 0 Deletion 19999 LOC_Os01g35630 retrotransposon, putative, centromere-specific, expressed FN3014-S Chr1 20192001 20235000 0 0 Deletion 42999 LOC_Os01g36400 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr1 20192001 20235000 0 0 Deletion 42999 LOC_Os01g36410 expressed protein FN3014-S Chr1 20192001 20235000 0 0 Deletion 42999 LOC_Os01g36420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr1 20192001 20235000 0 0 Deletion 42999 LOC_Os01g36430 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr1 20192001 20235000 0 0 Deletion 42999 LOC_Os01g36440 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr1 20192001 20235000 0 0 Deletion 42999 LOC_Os01g36450 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr1 23258001 23276000 0 0 Deletion 17999 LOC_Os01g41080 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr1 23258001 23276000 0 0 Deletion 17999 LOC_Os01g41090 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr1 23258001 23276000 0 0 Deletion 17999 LOC_Os01g41100 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr1 23258001 23276000 0 0 Deletion 17999 LOC_Os01g41810 cytochrome P450 72A1, putative, expressed FN3014-S Chr1 25727533 25727533 0 0 Insertion 2 upstream_gene_variant HET FN3014-S Chr1 29399001 29414000 0 0 Deletion 14999 LOC_Os01g51154 single myb histone, putative, expressed FN3014-S Chr1 29399001 29414000 0 0 Deletion 14999 LOC_Os01g51170 glycylpeptide N-tetradecanoyltransferase 1, putative, expressed FN3014-S Chr1 32862001 32875000 0 0 Deletion 12999 LOC_Os01g56910 expressed protein FN3014-S Chr1 32862001 32875000 0 0 Deletion 12999 LOC_Os01g57590 expressed protein FN3014-S Chr1 339737 339737 0 0 Insertion 1 INTRON HOMO FN3014-S Chr1 34233001 34246000 0 0 Deletion 12999 LOC_Os01g59240 expressed protein FN3014-S Chr1 34233001 34246000 0 0 Deletion 12999 LOC_Os01g59440 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed FN3014-S Chr1 34787247 34787248 0 0 Deletion 1 upstream_gene_variant HET FN3014-S Chr1 35630001 35644000 0 0 Deletion 13999 LOC_Os01g61980 expressed protein FN3014-S Chr1 36452621 36452624 0 0 Deletion 3 INTERGENIC HET FN3014-S Chr1 376291 376304 0 0 Deletion 13 INTRON HET FN3014-S Chr1 3985001 3994000 0 0 Deletion 8999 LOC_Os01g08560 DnaK family protein, putative, expressed FN3014-S Chr1 4909131 4909131 0 0 Insertion 4 3_prime_UTR_variant HET FN3014-S Chr10 11609555 11609557 0 0 Deletion 2 INTERGENIC HET FN3014-S Chr10 12768902 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g24820 transposon protein, putative, Mutator sub-class, expressed FN3014-S Chr10 12768903 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g24820 transposon protein, putative, Mutator sub-class, expressed FN3014-S Chr10 14154001 14170000 0 0 Deletion 15999 LOC_Os10g26930 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr10 14154001 14170000 0 0 Deletion 15999 LOC_Os10g28410 GA19388-PA, putative, expressed FN3014-S Chr10 16607243 16607243 0 0 Insertion 14 downstream_gene_variant HET FN3014-S Chr10 17822001 17846000 0 0 Deletion 23999 LOC_Os10g33750 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr10 19823096 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3014-S Chr10 20498529 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3014-S Chr10 20894606 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3014-S Chr10 3292001 3307000 0 0 Deletion 14999 LOC_Os10g06420 retrotransposon protein, putative, unclassified FN3014-S Chr10 3292001 3307000 0 0 Deletion 14999 LOC_Os10g06430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr10 3292001 3307000 0 0 Deletion 14999 LOC_Os10g06610 expressed protein FN3014-S Chr10 3638001 3664000 0 0 Deletion 25999 LOC_Os10g06990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr10 3638001 3664000 0 0 Deletion 25999 LOC_Os10g07000 hypothetical protein FN3014-S Chr10 3638001 3664000 0 0 Deletion 25999 LOC_Os10g07004 expressed protein FN3014-S Chr10 3638001 3664000 0 0 Deletion 25999 LOC_Os10g07010 3-ketoacyl-CoA synthase, putative, expressed FN3014-S Chr10 4407001 4415000 0 0 Deletion 7999 FN3014-S Chr10 4683001 4735000 0 0 Deletion 51999 LOC_Os10g08630 expressed protein FN3014-S Chr10 4683001 4735000 0 0 Deletion 51999 LOC_Os10g08640 expressed protein FN3014-S Chr10 4683001 4735000 0 0 Deletion 51999 LOC_Os10g08650 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr10 4683001 4735000 0 0 Deletion 51999 LOC_Os10g08660 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr10 4683001 4735000 0 0 Deletion 51999 LOC_Os10g08670 chalcone synthase, putative, expressed FN3014-S Chr10 4683001 4735000 0 0 Deletion 51999 LOC_Os10g08680 conserved hypothetical protein FN3014-S Chr10 4683001 4735000 0 0 Deletion 51999 LOC_Os10g08690 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr10 4683001 4735000 0 0 Deletion 51999 LOC_Os10g08696 retrotransposon protein, putative, Ty3-gypsy subclass FN3014-S Chr10 4683001 4735000 0 0 Deletion 51999 LOC_Os10g08702 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr10 4683001 4735000 0 0 Deletion 51999 LOC_Os10g08710 chalcone synthase, putative, expressed FN3014-S Chr10 4683001 4735000 0 0 Deletion 51999 LOC_Os10g08720 hypothetical protein FN3014-S Chr10 593001 606000 0 0 Deletion 12999 LOC_Os10g01950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr10 593001 606000 0 0 Deletion 12999 LOC_Os10g01960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr10 593001 606000 0 0 Deletion 12999 LOC_Os10g02530 retrotransposon protein, putative, Ty3-gypsy subclass FN3014-S Chr10 6287001 6316000 0 0 Deletion 28999 LOC_Os10g11340 nitroreductase family protein, putative, expressed FN3014-S Chr10 6287001 6316000 0 0 Deletion 28999 LOC_Os10g11354 MATE efflux family protein, putative, expressed FN3014-S Chr10 6287001 6316000 0 0 Deletion 28999 LOC_Os10g11370 LTPL87 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed FN3014-S Chr10 6287001 6316000 0 0 Deletion 28999 LOC_Os10g11384 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr10 6618993 Chr6 13457412 0 Translocation 0 LOC_Os06g23080 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr10 6618993 Chr6 13457412 0 Translocation 0 LOC_Os10g11930 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr10 6693459 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3014-S Chr10 8071001 8088000 0 0 Deletion 16999 LOC_Os10g15160 conserved hypothetical protein FN3014-S Chr10 8071001 8088000 0 0 Deletion 16999 LOC_Os10g15164 expressed protein FN3014-S Chr10 9032992 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3014-S Chr10 9092674 T-A 0 0 Single Base Substitution 0 INTRON HET FN3014-S Chr11 10902001 10914000 0 0 Deletion 11999 LOC_Os11g19120 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr11 10902001 10914000 0 0 Deletion 11999 LOC_Os11g19130 expressed protein FN3014-S Chr11 10902001 10914000 0 0 Deletion 11999 LOC_Os11g19330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr11 11306001 11331000 0 0 Deletion 24999 LOC_Os11g19620 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr11 11306001 11331000 0 0 Deletion 24999 LOC_Os11g19630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr11 11306001 11331000 0 0 Deletion 24999 LOC_Os11g19640 retrotransposon protein, putative, Ty3-gypsy subclass FN3014-S Chr11 11306001 11331000 0 0 Deletion 24999 LOC_Os11g19650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr11 11306001 11331000 0 0 Deletion 24999 LOC_Os11g19660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr11 11306001 11331000 0 0 Deletion 24999 LOC_Os11g19670 retrotransposon protein, putative, unclassified FN3014-S Chr11 11417001 11434000 0 0 Deletion 16999 LOC_Os11g19820 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr11 11417001 11434000 0 0 Deletion 16999 LOC_Os11g19830 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr11 11417001 11434000 0 0 Deletion 16999 LOC_Os11g19840 O-methyltransferase, putative, expressed FN3014-S Chr11 1201001 1223000 0 0 Deletion 21999 LOC_Os11g03270 nucleoside-triphosphatase, putative, expressed FN3014-S Chr11 1201001 1223000 0 0 Deletion 21999 LOC_Os11g03280 transposon protein, putative, unclassified, expressed FN3014-S Chr11 1201001 1223000 0 0 Deletion 21999 LOC_Os11g03290 nucleoside-triphosphatase, putative, expressed FN3014-S Chr11 13421001 13454000 0 0 Deletion 32999 LOC_Os11g23760 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr11 13421001 13454000 0 0 Deletion 32999 LOC_Os11g23770 cysteine protease, putative, expressed FN3014-S Chr11 13421001 13454000 0 0 Deletion 32999 LOC_Os11g23780 expressed protein FN3014-S Chr11 13421001 13454000 0 0 Deletion 32999 LOC_Os11g23900 retrotransposon protein, putative, unclassified FN3014-S Chr11 13540001 13549000 0 0 Deletion 8999 LOC_Os11g23910 retrotransposon protein, putative, unclassified FN3014-S Chr11 13540001 13549000 0 0 Deletion 8999 LOC_Os11g24150 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr11 15835114 15835144 0 0 Deletion 30 upstream_gene_variant HET FN3014-S Chr11 19914001 19927000 0 0 Deletion 12999 LOC_Os11g34305 transposon protein, putative, Mutator sub-class, expressed FN3014-S Chr11 20843001 20854000 0 0 Deletion 10999 LOC_Os11g35650 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr11 20924001 20940000 0 0 Deletion 15999 LOC_Os11g35700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr11 20924001 20940000 0 0 Deletion 15999 LOC_Os11g35890 leucine rich repeat protein, putative, expressed FN3014-S Chr11 21087001 21115000 0 0 Deletion 27999 LOC_Os11g35920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr11 21087001 21115000 0 0 Deletion 27999 LOC_Os11g35930 chalcone synthase, putative, expressed FN3014-S Chr11 21087001 21115000 0 0 Deletion 27999 LOC_Os11g35940 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr11 21087001 21115000 0 0 Deletion 27999 LOC_Os11g36070 expressed protein FN3014-S Chr11 21350001 21371000 0 0 Deletion 20999 LOC_Os11g36270 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr11 21350001 21371000 0 0 Deletion 20999 LOC_Os11g36280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr11 23684821 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3014-S Chr11 23782001 23796000 0 0 Deletion 13999 LOC_Os11g39920 expressed protein FN3014-S Chr11 23782001 23796000 0 0 Deletion 13999 LOC_Os11g40180 dirigent, putative, expressed FN3014-S Chr11 24125001 24137000 0 0 Deletion 11999 LOC_Os11g40460 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr11 24125001 24137000 0 0 Deletion 11999 LOC_Os11g41170 disease resistance protein RPM1, putative, expressed FN3014-S Chr11 24667001 24687000 0 0 Deletion 19999 LOC_Os11g41180 expressed protein FN3014-S Chr11 24667001 24687000 0 0 Deletion 19999 LOC_Os11g41230 ATBPM6, putative, expressed FN3014-S Chr11 24751001 24769000 0 0 Deletion 17999 LOC_Os11g41300 MBTB65 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3014-S Chr11 24751001 24769000 0 0 Deletion 17999 LOC_Os11g41310 MBTB66 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3014-S Chr11 24751001 24769000 0 0 Deletion 17999 LOC_Os11g41440 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr11 25603599 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3014-S Chr11 25603601 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3014-S Chr11 26588001 26600000 0 0 Deletion 11999 LOC_Os11g44050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr11 4528001 4540000 0 0 Deletion 11999 LOC_Os11g08569 cycloartenol synthase, putative, expressed FN3014-S Chr11 511626 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3014-S Chr11 5679001 5697000 0 0 Deletion 17999 LOC_Os11g10440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr11 5679001 5697000 0 0 Deletion 17999 LOC_Os11g10450 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr11 5679001 5697000 0 0 Deletion 17999 LOC_Os11g10560 transposon protein, putative, unclassified, expressed FN3014-S Chr11 8478001 8505000 0 0 Deletion 26999 LOC_Os11g15070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr11 8478001 8505000 0 0 Deletion 26999 LOC_Os11g15080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr11 8478001 8505000 0 0 Deletion 26999 LOC_Os11g15090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr11 8478001 8505000 0 0 Deletion 26999 LOC_Os11g15100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr11 9656001 9669000 0 0 Deletion 12999 LOC_Os11g17330 stripe rust resistance protein Yr10, putative, expressed FN3014-S Chr11 9656001 9669000 0 0 Deletion 12999 LOC_Os11g17410 transposon protein, putative, CACTA, En/Spm sub-class FN3014-S Chr11 9708001 9725000 0 0 Deletion 16999 LOC_Os11g17410 transposon protein, putative, CACTA, En/Spm sub-class FN3014-S Chr11 9708001 9725000 0 0 Deletion 16999 LOC_Os11g17420 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr11 9708001 9725000 0 0 Deletion 16999 LOC_Os11g17430 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr11 9708001 9725000 0 0 Deletion 16999 LOC_Os11g17440 enoyl-CoA hydratase/isomerase family protein, expressed FN3014-S Chr12 103815 103827 0 0 Deletion 12 CODON_DELETION HET LOC_Os12g01180 WRKY57, expressed FN3014-S Chr12 11762001 11794000 0 0 Deletion 31999 LOC_Os12g20200 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr12 11762001 11794000 0 0 Deletion 31999 LOC_Os12g20210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr12 11762001 11794000 0 0 Deletion 31999 LOC_Os12g20220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr12 11762001 11794000 0 0 Deletion 31999 LOC_Os12g20270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr12 11877001 11895000 0 0 Deletion 17999 LOC_Os12g20350 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr12 11877001 11895000 0 0 Deletion 17999 LOC_Os12g20360 hypothetical protein FN3014-S Chr12 11877001 11895000 0 0 Deletion 17999 LOC_Os12g20370 expressed protein FN3014-S Chr12 11877001 11895000 0 0 Deletion 17999 LOC_Os12g20450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr12 12172001 12183000 0 0 Deletion 10999 LOC_Os12g21670 hypothetical protein FN3014-S Chr12 12172001 12183000 0 0 Deletion 10999 LOC_Os12g21680 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr12 12172001 12183000 0 0 Deletion 10999 LOC_Os12g21760 RALFL25 - Rapid ALkalinization Factor RALF family protein precursor, putative, expressed FN3014-S Chr12 12239001 12257000 0 0 Deletion 17999 LOC_Os12g21770 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr12 12239001 12257000 0 0 Deletion 17999 LOC_Os12g21780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr12 13462604 13462604 0 0 Insertion 1 downstream_gene_variant HET FN3014-S Chr12 13635001 13644000 0 0 Deletion 8999 LOC_Os12g24680 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr12 14131001 14162000 0 0 Deletion 30999 LOC_Os12g24680 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr12 14131001 14162000 0 0 Deletion 30999 LOC_Os12g24690 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3014-S Chr12 14131001 14162000 0 0 Deletion 30999 LOC_Os12g24700 retrotransposon protein, putative, Ty1-copia subclass FN3014-S Chr12 143367 535512 0 0 Inversion 392145 FN3014-S Chr12 143382 535515 0 0 Inversion 392133 FN3014-S Chr12 1600437 1600438 0 0 Deletion 1 INTRON HOMO FN3014-S Chr12 16331001 16380000 0 0 Deletion 48999 LOC_Os12g27700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr12 16331001 16380000 0 0 Deletion 48999 LOC_Os12g27710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr12 16331001 16380000 0 0 Deletion 48999 LOC_Os12g27720 hypothetical protein FN3014-S Chr12 16331001 16380000 0 0 Deletion 48999 LOC_Os12g27730 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3014-S Chr12 16331001 16380000 0 0 Deletion 48999 LOC_Os12g27740 expressed protein FN3014-S Chr12 16331001 16380000 0 0 Deletion 48999 LOC_Os12g27750 OsFBX441 - F-box domain containing protein, expressed FN3014-S Chr12 16331001 16380000 0 0 Deletion 48999 LOC_Os12g27760 OsFBX442 - F-box domain containing protein, expressed FN3014-S Chr12 16331001 16380000 0 0 Deletion 48999 LOC_Os12g27770 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr12 16331001 16380000 0 0 Deletion 48999 LOC_Os12g27780 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr12 16709001 16725000 0 0 Deletion 15999 LOC_Os12g28280 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr12 16709001 16725000 0 0 Deletion 15999 LOC_Os12g29780 hypothetical protein FN3014-S Chr12 19553001 19576000 0 0 Deletion 22999 LOC_Os12g32430 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr12 19553001 19576000 0 0 Deletion 22999 LOC_Os12g32440 retrotransposon protein, putative, Ty1-copia subclass FN3014-S Chr12 19553001 19576000 0 0 Deletion 22999 LOC_Os12g32480 expressed protein FN3014-S Chr12 20910148 21304478 0 0 Inversion 394330 LOC_Os12g35000 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr12 20910158 21304510 0 0 Inversion 394352 LOC_Os12g35000 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr12 21242254 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN3014-S Chr12 21737001 21759000 0 0 Deletion 21999 LOC_Os12g35730 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr12 21737001 21759000 0 0 Deletion 21999 LOC_Os12g35790 expressed protein FN3014-S Chr12 24427001 24449000 0 0 Deletion 21999 LOC_Os12g39600 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr12 24427001 24449000 0 0 Deletion 21999 LOC_Os12g39610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr12 24427001 24449000 0 0 Deletion 21999 LOC_Os12g39790 expressed protein FN3014-S Chr12 24567001 24578000 0 0 Deletion 10999 LOC_Os12g40210 hypothetical protein FN3014-S Chr12 3130001 3148000 0 0 Deletion 17999 LOC_Os12g06500 expressed protein FN3014-S Chr12 3130001 3148000 0 0 Deletion 17999 LOC_Os12g06510 calcineurin B, putative, expressed FN3014-S Chr12 578016 578018 0 0 Deletion 2 FRAME_SHIFT HET LOC_Os12g01970 F-box family protein, putative, expressed FN3014-S Chr12 739001 762000 0 0 Deletion 22999 LOC_Os12g02330 LTPL13 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3014-S Chr12 739001 762000 0 0 Deletion 22999 LOC_Os12g02340 LTPL14 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3014-S Chr12 8111001 8145000 0 0 Deletion 33999 LOC_Os12g14260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr12 8111001 8145000 0 0 Deletion 33999 LOC_Os12g14270 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr12 8111001 8145000 0 0 Deletion 33999 LOC_Os12g14280 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr12 8111001 8145000 0 0 Deletion 33999 LOC_Os12g14290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr12 9218001 9229000 0 0 Deletion 10999 LOC_Os12g16150 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr12 9893001 9909000 0 0 Deletion 15999 LOC_Os12g17290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr12 9893001 9909000 0 0 Deletion 15999 LOC_Os12g17300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr12 9893001 9909000 0 0 Deletion 15999 LOC_Os12g17310 prefoldin, putative, expressed FN3014-S Chr2 10074660 10074661 0 0 Deletion 1 UTR_5_PRIME HOMO FN3014-S Chr2 11266001 11283000 0 0 Deletion 16999 LOC_Os02g19280 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr2 11266001 11283000 0 0 Deletion 16999 LOC_Os02g19290 expressed protein FN3014-S Chr2 11266001 11283000 0 0 Deletion 16999 LOC_Os02g19300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr2 11833001 11855000 0 0 Deletion 21999 LOC_Os02g20100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr2 11833001 11855000 0 0 Deletion 21999 LOC_Os02g20110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr2 11833001 11855000 0 0 Deletion 21999 LOC_Os02g20120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr2 11833001 11855000 0 0 Deletion 21999 LOC_Os02g20630 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr2 11920872 11920872 0 0 Insertion 3 upstream_gene_variant HET FN3014-S Chr2 12768001 12782000 0 0 Deletion 13999 LOC_Os02g21530 expressed protein FN3014-S Chr2 12768001 12782000 0 0 Deletion 13999 LOC_Os02g21540 expressed protein FN3014-S Chr2 12768001 12782000 0 0 Deletion 13999 LOC_Os02g22680 integral membrane protein DUF6 containing protein, expressed FN3014-S Chr2 14698001 14731000 0 0 Deletion 32999 LOC_Os02g25250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr2 14698001 14731000 0 0 Deletion 32999 LOC_Os02g25260 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr2 14698001 14731000 0 0 Deletion 32999 LOC_Os02g25270 expressed protein FN3014-S Chr2 14698001 14731000 0 0 Deletion 32999 LOC_Os02g25280 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3014-S Chr2 15927001 15947000 0 0 Deletion 19999 LOC_Os02g27110 expressed protein FN3014-S Chr2 16431073 16431079 0 0 Deletion 6 INTERGENIC HET FN3014-S Chr2 16499225 16499226 0 0 Deletion 1 UTR_5_PRIME HET FN3014-S Chr2 17640001 17665000 0 0 Deletion 24999 LOC_Os02g29660 retrotransposon protein, putative, Ty3-gypsy subclass FN3014-S Chr2 17640001 17665000 0 0 Deletion 24999 LOC_Os02g29670 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr2 17640001 17665000 0 0 Deletion 24999 LOC_Os02g29680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr2 17640001 17665000 0 0 Deletion 24999 LOC_Os02g30800 POLE1 - Putative DNA polymerase epsilon catalytic subunit, expressed FN3014-S Chr2 17648765 17648765 0 0 Insertion 4 upstream_gene_variant HET FN3014-S Chr2 19813001 19827000 0 0 Deletion 13999 LOC_Os02g33490 inorganic H+ pyrophosphatase, putative, expressed FN3014-S Chr2 21192001 21223000 0 0 Deletion 30999 LOC_Os02g35280 retrotransposon protein, putative, unclassified FN3014-S Chr2 21192001 21223000 0 0 Deletion 30999 LOC_Os02g35290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr2 21798132 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g36170 retrotransposon protein, putative, Ty3-gypsy subclass FN3014-S Chr2 22113001 22141000 0 0 Deletion 27999 LOC_Os02g36619 exo70 exocyst complex subunit, putative, expressed FN3014-S Chr2 22113001 22141000 0 0 Deletion 27999 LOC_Os02g36640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr2 22113001 22141000 0 0 Deletion 27999 LOC_Os02g36650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr2 22113001 22141000 0 0 Deletion 27999 LOC_Os02g36660 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr2 22113001 22141000 0 0 Deletion 27999 LOC_Os02g36670 expressed protein FN3014-S Chr2 22113001 22141000 0 0 Deletion 27999 LOC_Os02g36680 expressed protein FN3014-S Chr2 23654001 23682000 0 0 Deletion 27999 LOC_Os02g39160 hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed FN3014-S Chr2 23654001 23682000 0 0 Deletion 27999 LOC_Os02g39170 GDSL-like lipase/acylhydrolase, putative, expressed FN3014-S Chr2 23654001 23682000 0 0 Deletion 27999 LOC_Os02g39180 expressed protein FN3014-S Chr2 23654001 23682000 0 0 Deletion 27999 LOC_Os02g39190 expressed protein FN3014-S Chr2 23654001 23682000 0 0 Deletion 27999 LOC_Os02g39200 nucleotide-sugar transporter family protein, putative, expressed FN3014-S Chr2 24799105 24799106 0 0 Deletion 1 upstream_gene_variant HET FN3014-S Chr2 27881001 27906000 0 0 Deletion 24999 LOC_Os02g45770 OsMADS6 - MADS-box family gene with MIKCc type-box, expressed FN3014-S Chr2 27881001 27906000 0 0 Deletion 24999 LOC_Os02g45780 zinc finger, C3HC4 type domain containing protein, expressed FN3014-S Chr2 27881001 27906000 0 0 Deletion 24999 LOC_Os02g45790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr2 27881001 27906000 0 0 Deletion 24999 LOC_Os02g45800 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr2 29956001 29977000 0 0 Deletion 20999 LOC_Os02g49010 retrotransposon protein, putative, Ty3-gypsy subclass FN3014-S Chr2 29956001 29977000 0 0 Deletion 20999 LOC_Os02g49020 retrotransposon protein, putative, Ty3-gypsy subclass FN3014-S Chr2 29956001 29977000 0 0 Deletion 20999 LOC_Os02g49090 WD domain, G-beta repeat domain containing protein, expressed FN3014-S Chr2 30855496 30855504 0 0 Deletion 8 FRAME_SHIFT HOMO LOC_Os02g50530 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3014-S Chr2 30943001 30967000 0 0 Deletion 23999 LOC_Os02g50670 expressed protein FN3014-S Chr2 30943001 30967000 0 0 Deletion 23999 LOC_Os02g50680 AAA-type ATPase family protein, putative, expressed FN3014-S Chr2 30943001 30967000 0 0 Deletion 23999 LOC_Os02g50690 GDSL-like lipase/acylhydrolase, putative, expressed FN3014-S Chr2 30943001 30967000 0 0 Deletion 23999 LOC_Os02g50790 nuclear-pore anchor, putative, expressed FN3014-S Chr2 3314001 3327000 0 0 Deletion 12999 LOC_Os02g06600 receptor-like protein kinase 2 precursor, putative, expressed FN3014-S Chr2 3314001 3327000 0 0 Deletion 12999 LOC_Os02g08260 HD domain containing protein 2, putative, expressed FN3014-S Chr2 35902001 35924000 0 0 Deletion 21999 LOC_Os02g58780 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr2 35902001 35924000 0 0 Deletion 21999 LOC_Os02g58790 cell division inhibitor, putative, expressed FN3014-S Chr2 35902001 35924000 0 0 Deletion 21999 LOC_Os03g03800 expressed protein FN3014-S Chr2 6767052 6767052 0 0 Insertion 1 upstream_gene_variant HET FN3014-S Chr2 7056971 7056974 0 0 Deletion 3 CODON_DELETION HET LOC_Os02g13250 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr2 8199737 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3014-S Chr3 12869001 12891000 0 0 Deletion 21999 LOC_Os03g22460 expressed protein FN3014-S Chr3 12869001 12891000 0 0 Deletion 21999 LOC_Os03g22470 desiccation-related protein PCC13-62 precursor, putative, expressed FN3014-S Chr3 12869001 12891000 0 0 Deletion 21999 LOC_Os03g22480 transposon protein, putative, unclassified, expressed FN3014-S Chr3 13118986 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3014-S Chr3 13118987 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3014-S Chr3 13683272 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3014-S Chr3 16275001 16296000 0 0 Deletion 20999 LOC_Os03g28289 expressed protein FN3014-S Chr3 16275001 16296000 0 0 Deletion 20999 LOC_Os03g28300 protein kinase domain containing protein, expressed FN3014-S Chr3 16275001 16296000 0 0 Deletion 20999 LOC_Os03g28310 dnaJ domain containing protein, expressed FN3014-S Chr3 16609001 16626000 0 0 Deletion 16999 LOC_Os03g29220 retrotransposon protein, putative, LINE subclass, expressed FN3014-S Chr3 16609001 16626000 0 0 Deletion 16999 LOC_Os03g29222 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr3 16609001 16626000 0 0 Deletion 16999 LOC_Os03g29224 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr3 16609001 16626000 0 0 Deletion 16999 LOC_Os03g29230 retrotransposon protein, putative, unclassified FN3014-S Chr3 16609001 16626000 0 0 Deletion 16999 LOC_Os03g29360 expressed protein FN3014-S Chr3 17147001 17170000 0 0 Deletion 22999 LOC_Os03g30080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr3 17147001 17170000 0 0 Deletion 22999 LOC_Os03g30084 expressed protein FN3014-S Chr3 17147001 17170000 0 0 Deletion 22999 LOC_Os03g30088 retrotransposon protein, putative, unclassified FN3014-S Chr3 17313001 17326000 0 0 Deletion 12999 LOC_Os03g30370 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr3 17313001 17326000 0 0 Deletion 12999 LOC_Os03g30390 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr3 17313001 17326000 0 0 Deletion 12999 LOC_Os03g31340 protein transport protein SEC61 subunit gamma, putative FN3014-S Chr3 17856001 17875000 0 0 Deletion 18999 LOC_Os03g31360 glutelin, putative, expressed FN3014-S Chr3 17856001 17875000 0 0 Deletion 18999 LOC_Os03g31370 glycine-rich protein, putative, expressed FN3014-S Chr3 17856001 17875000 0 0 Deletion 18999 LOC_Os03g31550 aldehyde oxidase, putative, expressed FN3014-S Chr3 18070001 18079000 0 0 Deletion 8999 LOC_Os03g31650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr3 18070001 18079000 0 0 Deletion 8999 LOC_Os03g32860 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr3 19000001 19051000 0 0 Deletion 50999 LOC_Os03g33230 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr3 19000001 19051000 0 0 Deletion 50999 LOC_Os03g33240 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr3 19000001 19051000 0 0 Deletion 50999 LOC_Os03g33250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr3 19000001 19051000 0 0 Deletion 50999 LOC_Os03g33260 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr3 19000001 19051000 0 0 Deletion 50999 LOC_Os03g33270 retrotransposon protein, putative, unclassified FN3014-S Chr3 19000001 19051000 0 0 Deletion 50999 LOC_Os03g33280 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr3 19000001 19051000 0 0 Deletion 50999 LOC_Os03g33290 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr3 19000001 19051000 0 0 Deletion 50999 LOC_Os03g33300 retrotransposon, putative, centromere-specific, expressed FN3014-S Chr3 19033119 19033119 0 0 Insertion 1 frameshift_variant HET LOC_Os03g33270 retrotransposon protein, putative, unclassified FN3014-S Chr3 19331001 19354000 0 0 Deletion 22999 LOC_Os03g33837 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr3 19331001 19354000 0 0 Deletion 22999 LOC_Os03g33850 retrotransposon protein, putative, Ty1-copia subclass FN3014-S Chr3 19331001 19354000 0 0 Deletion 22999 LOC_Os03g33860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr3 19331001 19354000 0 0 Deletion 22999 LOC_Os03g33870 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr3 19331001 19354000 0 0 Deletion 22999 LOC_Os03g33880 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr3 19331001 19354000 0 0 Deletion 22999 LOC_Os03g33890 retrotransposon protein, putative, unclassified FN3014-S Chr3 19331001 19354000 0 0 Deletion 22999 LOC_Os03g33900 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr3 19331001 19354000 0 0 Deletion 22999 LOC_Os03g35440 retrotransposon protein, putative, Ty3-gypsy subclass FN3014-S Chr3 19677203 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3014-S Chr3 20535249 Chr1 14983481 0 Translocation 0 LOC_Os01g26400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr3 21130001 21143000 0 0 Deletion 12999 LOC_Os03g38076 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr3 21130001 21143000 0 0 Deletion 12999 LOC_Os03g38082 retrotransposon protein, putative, Ty3-gypsy subclass FN3014-S Chr3 21130001 21143000 0 0 Deletion 12999 LOC_Os03g38250 disease resistance RPP13-like protein 1, putative, expressed FN3014-S Chr3 21866001 21882000 0 0 Deletion 15999 LOC_Os03g39350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr3 21866001 21882000 0 0 Deletion 15999 LOC_Os03g39356 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr3 21866001 21882000 0 0 Deletion 15999 LOC_Os03g39362 retrotransposon protein, putative, unclassified FN3014-S Chr3 21866001 21882000 0 0 Deletion 15999 LOC_Os03g39370 expressed protein FN3014-S Chr3 21866001 21882000 0 0 Deletion 15999 LOC_Os03g39380 expressed protein FN3014-S Chr3 23305307 23305317 0 0 Deletion 10 intron_variant HET FN3014-S Chr3 23555785 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os03g42334 expressed protein FN3014-S Chr3 23953001 23965000 0 0 Deletion 11999 LOC_Os03g42954 conserved hypothetical protein FN3014-S Chr3 23953001 23965000 0 0 Deletion 11999 LOC_Os03g42960 expressed protein FN3014-S Chr3 23953001 23965000 0 0 Deletion 11999 LOC_Os03g42970 transposon protein, putative, unclassified, expressed FN3014-S Chr3 23953001 23965000 0 0 Deletion 11999 LOC_Os03g43150 transposon protein, putative, unclassified, expressed FN3014-S Chr3 2852705 2852712 0 0 Deletion 7 FRAME_SHIFT HET LOC_Os03g05730 cell division control protein 48 homolog E, putative, expressed FN3014-S Chr3 30133001 30151000 0 0 Deletion 17999 LOC_Os03g52520 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr3 30133001 30151000 0 0 Deletion 17999 LOC_Os03g52530 retrotransposon protein, putative, Ty3-gypsy subclass FN3014-S Chr3 30133001 30151000 0 0 Deletion 17999 LOC_Os03g52540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr3 30133001 30151000 0 0 Deletion 17999 LOC_Os03g52550 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr3 30133001 30151000 0 0 Deletion 17999 LOC_Os03g52560 glycosyl hydrolases, putative, expressed FN3014-S Chr3 30133001 30151000 0 0 Deletion 17999 LOC_Os03g53680 expressed protein FN3014-S Chr3 32219001 32233000 0 0 Deletion 13999 LOC_Os03g56566 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr3 32219001 32233000 0 0 Deletion 13999 LOC_Os03g56572 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr3 32219001 32233000 0 0 Deletion 13999 LOC_Os03g57040 clathrin adaptor complex small chain domain containing protein, expressed FN3014-S Chr3 33278815 33278816 0 0 Deletion 1 INTERGENIC HOMO FN3014-S Chr3 33324479 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3014-S Chr3 34362001 34387000 0 0 Deletion 24999 LOC_Os03g60440 expressed protein FN3014-S Chr3 34362001 34387000 0 0 Deletion 24999 LOC_Os03g60449 hypothetical protein FN3014-S Chr3 34362001 34387000 0 0 Deletion 24999 LOC_Os03g60460 aminopeptidase, putative, expressed FN3014-S Chr3 34362001 34387000 0 0 Deletion 24999 LOC_Os03g60470 glycine-rich protein A3, putative, expressed FN3014-S Chr3 34362001 34387000 0 0 Deletion 24999 LOC_Os03g60480 heavy metal-associated domain containing protein, expressed FN3014-S Chr3 36046001 36063000 0 0 Deletion 16999 LOC_Os03g63830 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr3 36046001 36063000 0 0 Deletion 16999 LOC_Os04g01180 retrotransposon protein, putative, LINE subclass, expressed FN3014-S Chr3 6544001 6559000 0 0 Deletion 14999 LOC_Os03g12400 transposon protein, putative, unclassified FN3014-S Chr3 6544001 6559000 0 0 Deletion 14999 LOC_Os03g12414 cyclin, putative, expressed FN3014-S Chr3 6544001 6559000 0 0 Deletion 14999 LOC_Os03g12530 cation efflux family protein, putative, expressed FN3014-S Chr3 6558600 A-G 0 0 Single Base Substitution 0 INTRON HET FN3014-S Chr3 6638001 6654000 0 0 Deletion 15999 LOC_Os03g12540 hypothetical protein FN3014-S Chr3 6638001 6654000 0 0 Deletion 15999 LOC_Os03g12550 expressed protein FN3014-S Chr3 6638001 6654000 0 0 Deletion 15999 LOC_Os03g14410 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr4 10012703 10012705 0 0 Deletion 2 intron_variant HET FN3014-S Chr4 10586001 10607000 0 0 Deletion 20999 LOC_Os04g19080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr4 10586001 10607000 0 0 Deletion 20999 LOC_Os04g19090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr4 10586001 10607000 0 0 Deletion 20999 LOC_Os04g19100 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr4 10865001 10877000 0 0 Deletion 11999 LOC_Os04g19520 retrotransposon protein, putative, Ty3-gypsy subclass FN3014-S Chr4 10865001 10877000 0 0 Deletion 11999 LOC_Os04g19530 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr4 10865001 10877000 0 0 Deletion 11999 LOC_Os04g19540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr4 10865001 10877000 0 0 Deletion 11999 LOC_Os04g19900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr4 12068001 12100000 0 0 Deletion 31999 LOC_Os04g21370 expressed protein FN3014-S Chr4 12068001 12100000 0 0 Deletion 31999 LOC_Os04g21380 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr4 12068001 12100000 0 0 Deletion 31999 LOC_Os04g21390 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr4 12068001 12100000 0 0 Deletion 31999 LOC_Os04g21400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr4 12068001 12100000 0 0 Deletion 31999 LOC_Os04g21410 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3014-S Chr4 12316287 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3014-S Chr4 12529159 12529159 0 0 Insertion 10 downstream_gene_variant HET FN3014-S Chr4 13258001 13296000 0 0 Deletion 37999 LOC_Os04g23240 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr4 13258001 13296000 0 0 Deletion 37999 LOC_Os04g23250 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr4 13258001 13296000 0 0 Deletion 37999 LOC_Os04g23260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr4 13258001 13296000 0 0 Deletion 37999 LOC_Os04g23270 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr4 13258001 13296000 0 0 Deletion 37999 LOC_Os04g23280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr4 13258001 13296000 0 0 Deletion 37999 LOC_Os04g23290 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr4 14115001 14129000 0 0 Deletion 13999 LOC_Os04g24590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr4 14115001 14129000 0 0 Deletion 13999 LOC_Os04g24780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr4 1434001 1455000 0 0 Deletion 20999 LOC_Os04g03350 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr4 1434001 1455000 0 0 Deletion 20999 LOC_Os04g03360 jacalin-like lectin domain containing protein, expressed FN3014-S Chr4 1434001 1455000 0 0 Deletion 20999 LOC_Os04g03370 cysteine-rich receptor-like protein kinase 41 precursor, putative, expressed FN3014-S Chr4 1434001 1455000 0 0 Deletion 20999 LOC_Os04g03380 legume lectins beta domain containing protein, putative, expressed FN3014-S Chr4 1434001 1455000 0 0 Deletion 20999 LOC_Os04g03390 expressed protein FN3014-S Chr4 1485001 1497000 0 0 Deletion 11999 LOC_Os04g03460 retrotransposon protein, putative, unclassified FN3014-S Chr4 1485001 1497000 0 0 Deletion 11999 LOC_Os04g03690 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr4 15123205 15168442 0 0 Inversion 45237 LOC_Os04g25990 tRNA methyltransferase complex GCD14 subunit, putative, expressed FN3014-S Chr4 15941001 15986000 0 0 Deletion 44999 LOC_Os04g26970 retrotransposon protein, putative, unclassified FN3014-S Chr4 15941001 15986000 0 0 Deletion 44999 LOC_Os04g26980 terpene synthase, putative, expressed FN3014-S Chr4 15941001 15986000 0 0 Deletion 44999 LOC_Os04g26994 retrotransposon protein, putative, unclassified FN3014-S Chr4 15941001 15986000 0 0 Deletion 44999 LOC_Os04g27010 hypothetical protein FN3014-S Chr4 15941001 15986000 0 0 Deletion 44999 LOC_Os04g27092 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr4 1627001 1649000 0 0 Deletion 21999 LOC_Os04g03700 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr4 1627001 1649000 0 0 Deletion 21999 LOC_Os04g03710 OsSub36 - Putative Subtilisin homologue, expressed FN3014-S Chr4 1627001 1649000 0 0 Deletion 21999 LOC_Os04g03720 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr4 1627001 1649000 0 0 Deletion 21999 LOC_Os04g03920 expressed protein FN3014-S Chr4 16989001 17005000 0 0 Deletion 15999 LOC_Os04g28690 fatty acyl coA reductase, putative, expressed FN3014-S Chr4 16989001 17005000 0 0 Deletion 15999 LOC_Os04g29080 hypothetical protein FN3014-S Chr4 1792001 1809000 0 0 Deletion 16999 LOC_Os04g03930 expressed protein FN3014-S Chr4 1792001 1809000 0 0 Deletion 16999 LOC_Os04g03940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr4 1792001 1809000 0 0 Deletion 16999 LOC_Os04g03950 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr4 1792001 1809000 0 0 Deletion 16999 LOC_Os04g03960 hypothetical protein FN3014-S Chr4 1792001 1809000 0 0 Deletion 16999 LOC_Os04g03970 hypothetical protein FN3014-S Chr4 18280001 18296000 0 0 Deletion 15999 LOC_Os04g30620 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr4 18280001 18296000 0 0 Deletion 15999 LOC_Os04g30630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr4 2383001 2397000 0 0 Deletion 13999 LOC_Os04g04940 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr4 2383001 2397000 0 0 Deletion 13999 LOC_Os04g04950 copper methylamine oxidase precursor, putative, expressed FN3014-S Chr4 26456788 26456788 0 0 Insertion 3 intergenic_region HET FN3014-S Chr4 27024180 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3014-S Chr4 32245001 32259000 0 0 Deletion 13999 LOC_Os04g54130 TKL_IRAK_DUF26-ld.1 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3014-S Chr4 32245001 32259000 0 0 Deletion 13999 LOC_Os04g54140 receptor-like kinase, putative, expressed FN3014-S Chr4 32245001 32259000 0 0 Deletion 13999 LOC_Os04g55710 transposon protein, putative, unclassified, expressed FN3014-S Chr4 34766001 34782000 0 0 Deletion 15999 LOC_Os04g58440 retrotransposon protein, putative, unclassified FN3014-S Chr4 34766001 34782000 0 0 Deletion 15999 LOC_Os04g58450 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr4 34766001 34782000 0 0 Deletion 15999 LOC_Os04g58460 expressed protein FN3014-S Chr4 34766001 34782000 0 0 Deletion 15999 LOC_Os04g58470 choline transporter-related, putative, expressed FN3014-S Chr4 34766001 34782000 0 0 Deletion 15999 LOC_Os04g58730 AT hook motif domain containing protein, expressed FN3014-S Chr4 4981001 5011000 0 0 Deletion 29999 LOC_Os04g09360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr4 4981001 5011000 0 0 Deletion 29999 LOC_Os04g09370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr4 4981001 5011000 0 0 Deletion 29999 LOC_Os04g09380 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3014-S Chr4 4981001 5011000 0 0 Deletion 29999 LOC_Os04g09390 HEV3 - Hevein family protein precursor, expressed FN3014-S Chr4 5188001 5206000 0 0 Deletion 17999 LOC_Os04g09680 caffeic acid 3-O-methyltransferase, putative, expressed FN3014-S Chr4 5188001 5206000 0 0 Deletion 17999 LOC_Os04g09690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr4 5188001 5206000 0 0 Deletion 17999 LOC_Os04g09700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr4 5188001 5206000 0 0 Deletion 17999 LOC_Os04g09710 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr4 5188001 5206000 0 0 Deletion 17999 LOC_Os04g09930 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr4 5816001 5854000 0 0 Deletion 37999 LOC_Os04g10720 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr4 5816001 5854000 0 0 Deletion 37999 LOC_Os04g10724 retrotransposon protein, putative, unclassified FN3014-S Chr4 5816001 5854000 0 0 Deletion 37999 LOC_Os04g10730 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr4 5816001 5854000 0 0 Deletion 37999 LOC_Os04g10740 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr4 5816001 5854000 0 0 Deletion 37999 LOC_Os04g10750 inorganic phosphate transporter, putative, expressed FN3014-S Chr4 5816001 5854000 0 0 Deletion 37999 LOC_Os04g10760 expressed protein FN3014-S Chr4 5816001 5854000 0 0 Deletion 37999 LOC_Os04g11370 expressed protein FN3014-S Chr4 6179922 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g11320 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr4 7120075 A-G 0 0 Single Base Substitution 0 INTRON HET FN3014-S Chr4 8148001 8159000 0 0 Deletion 10999 LOC_Os04g14840 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr4 8776001 8810000 0 0 Deletion 33999 LOC_Os04g16160 expressed protein FN3014-S Chr4 8776001 8810000 0 0 Deletion 33999 LOC_Os04g16170 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr4 8776001 8810000 0 0 Deletion 33999 LOC_Os04g16180 retrotransposon protein, putative, unclassified FN3014-S Chr4 8776001 8810000 0 0 Deletion 33999 LOC_Os04g16190 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr4 8776001 8810000 0 0 Deletion 33999 LOC_Os04g16200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr4 8776001 8810000 0 0 Deletion 33999 LOC_Os04g16220 retrotransposon protein, putative, Ty3-gypsy subclass FN3014-S Chr4 8855520 8855528 0 0 Deletion 8 INTERGENIC HET FN3014-S Chr4 9032767 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g16600 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr4 9045297 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g16630 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr5 10606781 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3014-S Chr5 10738138 10738140 0 0 Deletion 2 upstream_gene_variant HET FN3014-S Chr5 11791001 11802000 0 0 Deletion 10999 LOC_Os05g20160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr5 11791001 11802000 0 0 Deletion 10999 LOC_Os05g20310 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr5 11904001 12011000 0 0 Deletion 106999 LOC_Os05g20310 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr5 11904001 12011000 0 0 Deletion 106999 LOC_Os05g20320 expressed protein FN3014-S Chr5 11904001 12011000 0 0 Deletion 106999 LOC_Os05g20330 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr5 11904001 12011000 0 0 Deletion 106999 LOC_Os05g20340 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr5 11904001 12011000 0 0 Deletion 106999 LOC_Os05g20350 expressed protein FN3014-S Chr5 11904001 12011000 0 0 Deletion 106999 LOC_Os05g20360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr5 11904001 12011000 0 0 Deletion 106999 LOC_Os05g20370 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr5 11904001 12011000 0 0 Deletion 106999 LOC_Os05g20380 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr5 11904001 12011000 0 0 Deletion 106999 LOC_Os05g20390 transposon protein, putative, unclassified, expressed FN3014-S Chr5 11904001 12011000 0 0 Deletion 106999 LOC_Os05g20400 transposon protein, putative, unclassified, expressed FN3014-S Chr5 11904001 12011000 0 0 Deletion 106999 LOC_Os05g20410 retrotransposon protein, putative, Ty3-gypsy subclass FN3014-S Chr5 11904001 12011000 0 0 Deletion 106999 LOC_Os05g20420 expressed protein FN3014-S Chr5 11904001 12011000 0 0 Deletion 106999 LOC_Os05g20430 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr5 11904001 12011000 0 0 Deletion 106999 LOC_Os05g20440 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr5 11904001 12011000 0 0 Deletion 106999 LOC_Os05g20450 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr5 11904001 12011000 0 0 Deletion 106999 LOC_Os05g20460 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr5 13403153 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3014-S Chr5 15432585 15432606 0 0 Deletion 21 upstream_gene_variant HET FN3014-S Chr5 15510001 15541000 0 0 Deletion 30999 LOC_Os05g26720 PROLM16 - Prolamin precursor, expressed FN3014-S Chr5 15510001 15541000 0 0 Deletion 30999 LOC_Os05g26730 retrotransposon protein, putative, LINE subclass, expressed FN3014-S Chr5 15510001 15541000 0 0 Deletion 30999 LOC_Os05g26740 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr5 15510001 15541000 0 0 Deletion 30999 LOC_Os05g26750 PROLM17 - Prolamin precursor, expressed FN3014-S Chr5 15510001 15541000 0 0 Deletion 30999 LOC_Os05g26760 expressed protein FN3014-S Chr5 15510001 15541000 0 0 Deletion 30999 LOC_Os05g26770 PROLM18 - Prolamin precursor, expressed FN3014-S Chr5 15510001 15541000 0 0 Deletion 30999 LOC_Os05g26780 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr5 15510001 15541000 0 0 Deletion 30999 LOC_Os05g26790 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr5 15510001 15541000 0 0 Deletion 30999 LOC_Os05g26800 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr5 15784001 15796000 0 0 Deletion 11999 LOC_Os05g27140 transposon protein, putative, CACTA, En/Spm sub-class FN3014-S Chr5 15784001 15796000 0 0 Deletion 11999 LOC_Os05g27230 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr5 17409001 17426000 0 0 Deletion 16999 LOC_Os05g30090 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr5 17409001 17426000 0 0 Deletion 16999 LOC_Os05g30100 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr5 19265001 19279000 0 0 Deletion 13999 LOC_Os05g33330 transposon protein, putative, CACTA, En/Spm sub-class FN3014-S Chr5 19407613 19407613 0 0 Insertion 2 upstream_gene_variant HET FN3014-S Chr5 19546001 19580000 0 0 Deletion 33999 LOC_Os05g33330 transposon protein, putative, CACTA, En/Spm sub-class FN3014-S Chr5 19546001 19580000 0 0 Deletion 33999 LOC_Os05g33340 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr5 20468163 20468163 0 0 Insertion 10 downstream_gene_variant HET FN3014-S Chr5 23703001 23718000 0 0 Deletion 14999 LOC_Os05g40350 expressed protein FN3014-S Chr5 23703001 23718000 0 0 Deletion 14999 LOC_Os05g40360 expressed protein FN3014-S Chr5 23703001 23718000 0 0 Deletion 14999 LOC_Os05g41840 expressed protein FN3014-S Chr5 24801805 24801810 0 0 Deletion 5 INTERGENIC HOMO FN3014-S Chr5 25202001 25214000 0 0 Deletion 11999 LOC_Os05g43350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr5 25202001 25214000 0 0 Deletion 11999 LOC_Os05g44770 receptor-like protein kinase 5 precursor, putative, expressed FN3014-S Chr5 26105001 26124000 0 0 Deletion 18999 LOC_Os05g44922 6-phosphofructokinase, putative, expressed FN3014-S Chr5 26105001 26124000 0 0 Deletion 18999 LOC_Os05g44930 receptor-like protein kinase, putative, expressed FN3014-S Chr5 26105001 26124000 0 0 Deletion 18999 LOC_Os05g44940 protein kinase domain containing protein, expressed FN3014-S Chr5 28467158 28467168 0 0 Deletion 10 INTERGENIC HET FN3014-S Chr5 4532001 4550000 0 0 Deletion 17999 LOC_Os05g08310 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr5 4532001 4550000 0 0 Deletion 17999 LOC_Os05g08320 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr5 4532001 4550000 0 0 Deletion 17999 LOC_Os05g08330 hypothetical protein FN3014-S Chr5 4532001 4550000 0 0 Deletion 17999 LOC_Os05g08340 expressed protein FN3014-S Chr5 4532001 4550000 0 0 Deletion 17999 LOC_Os05g09220 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr5 5129970 5129970 0 0 Insertion 6 upstream_gene_variant HET FN3014-S Chr5 6455506 6455513 0 0 Deletion 7 INTRON HET FN3014-S Chr5 6550001 6574000 0 0 Deletion 23999 LOC_Os05g11590 expressed protein FN3014-S Chr5 6550001 6574000 0 0 Deletion 23999 LOC_Os05g11600 expressed protein FN3014-S Chr5 6550001 6574000 0 0 Deletion 23999 LOC_Os05g12180 chalcone synthase, putative, expressed FN3014-S Chr5 7240001 7256000 0 0 Deletion 15999 LOC_Os05g12620 retrotransposon, putative, centromere-specific, expressed FN3014-S Chr5 7240001 7256000 0 0 Deletion 15999 LOC_Os05g12630 expressed protein FN3014-S Chr5 7240001 7256000 0 0 Deletion 15999 LOC_Os05g12640 BURP domain containing protein, expressed FN3014-S Chr5 7787474 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3014-S Chr5 7865001 7891000 0 0 Deletion 25999 LOC_Os05g14090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr5 7865001 7891000 0 0 Deletion 25999 LOC_Os05g14100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr5 7865001 7891000 0 0 Deletion 25999 LOC_Os05g14110 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr5 7865001 7891000 0 0 Deletion 25999 LOC_Os05g14120 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr5 9007001 9033000 0 0 Deletion 25999 LOC_Os05g15960 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr5 9007001 9033000 0 0 Deletion 25999 LOC_Os05g15970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr5 9007001 9033000 0 0 Deletion 25999 LOC_Os05g15980 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr5 9007001 9033000 0 0 Deletion 25999 LOC_Os05g15990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr5 9202001 9217000 0 0 Deletion 14999 LOC_Os05g16270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr5 9202001 9217000 0 0 Deletion 14999 LOC_Os05g16740 SHR5-receptor-like kinase, putative, expressed FN3014-S Chr5 9484996 9484996 0 0 Insertion 1 downstream_gene_variant HET FN3014-S Chr5 9517001 9533000 0 0 Deletion 15999 LOC_Os05g17010 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr5 9710001 9744000 0 0 Deletion 33999 LOC_Os05g17020 expressed protein FN3014-S Chr5 9710001 9744000 0 0 Deletion 33999 LOC_Os05g17030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr5 9710001 9744000 0 0 Deletion 33999 LOC_Os05g17040 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr5 9710001 9744000 0 0 Deletion 33999 LOC_Os05g17050 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr6 105001 120000 0 0 Deletion 14999 LOC_Os06g01110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr6 105001 120000 0 0 Deletion 14999 LOC_Os06g01120 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr6 105001 120000 0 0 Deletion 14999 LOC_Os06g01130 retrotransposon protein, putative, unclassified FN3014-S Chr6 105001 120000 0 0 Deletion 14999 LOC_Os06g03120 aspartic proteinase nepenthesin-2 precursor, putative, expressed FN3014-S Chr6 10828331 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3014-S Chr6 11840001 11858000 0 0 Deletion 17999 LOC_Os06g20570 glycosyltransferase, putative, expressed FN3014-S Chr6 11840001 11858000 0 0 Deletion 17999 LOC_Os06g20580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr6 11840001 11858000 0 0 Deletion 17999 LOC_Os06g20590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr6 11840001 11858000 0 0 Deletion 17999 LOC_Os06g20600 retrotransposon protein, putative, unclassified FN3014-S Chr6 14125001 14154000 0 0 Deletion 28999 LOC_Os06g24150 retrotransposon protein, putative, Ty3-gypsy subclass FN3014-S Chr6 14125001 14154000 0 0 Deletion 28999 LOC_Os06g24160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr6 14125001 14154000 0 0 Deletion 28999 LOC_Os06g24170 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr6 14125001 14154000 0 0 Deletion 28999 LOC_Os06g24180 cytochrome P450 84A1, putative, expressed FN3014-S Chr6 14429001 14442000 0 0 Deletion 12999 FN3014-S Chr6 15497511 15497524 0 0 Deletion 13 INTERGENIC HET FN3014-S Chr6 17311001 17336000 0 0 Deletion 24999 LOC_Os06g30060 expressed protein FN3014-S Chr6 17311001 17336000 0 0 Deletion 24999 LOC_Os06g30070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr6 17311001 17336000 0 0 Deletion 24999 LOC_Os06g30080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr6 31029314 31029322 0 0 Deletion 8 upstream_gene_variant HET FN3014-S Chr6 9115001 9133000 0 0 Deletion 17999 LOC_Os06g16030 amidase family protein, putative, expressed FN3014-S Chr6 9115001 9133000 0 0 Deletion 17999 LOC_Os06g16040 expressed protein FN3014-S Chr6 9115001 9133000 0 0 Deletion 17999 LOC_Os06g16050 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr7 10416654 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g17630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr7 12946010 12946018 0 0 Deletion 8 intron_variant HET FN3014-S Chr7 13595001 13616000 0 0 Deletion 20999 LOC_Os07g24000 AWPM-19-like membrane family protein, putative, expressed FN3014-S Chr7 13595001 13616000 0 0 Deletion 20999 LOC_Os07g24010 hypothetical protein FN3014-S Chr7 13595001 13616000 0 0 Deletion 20999 LOC_Os07g24020 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr7 13595001 13616000 0 0 Deletion 20999 LOC_Os07g24310 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr7 14668001 14700000 0 0 Deletion 31999 LOC_Os07g25590 decarboxylase, putative, expressed FN3014-S Chr7 14668001 14700000 0 0 Deletion 31999 LOC_Os07g25600 expressed protein FN3014-S Chr7 14668001 14700000 0 0 Deletion 31999 LOC_Os07g25620 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr7 14668001 14700000 0 0 Deletion 31999 LOC_Os07g25630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr7 14668001 14700000 0 0 Deletion 31999 LOC_Os07g25640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr7 14986001 15000000 0 0 Deletion 13999 LOC_Os07g26120 transposon protein, putative, unclassified, expressed FN3014-S Chr7 14986001 15000000 0 0 Deletion 13999 LOC_Os07g26700 UPF0041 domain containing protein, putative, expressed FN3014-S Chr7 16578001 16589000 0 0 Deletion 10999 LOC_Os07g28960 hypothetical protein FN3014-S Chr7 20129219 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3014-S Chr7 20724675 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g34570 FAD dependent oxidoreductase domain containing protein, expressed FN3014-S Chr7 21961296 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3014-S Chr7 22683001 22711000 0 0 Deletion 27999 LOC_Os07g37820 expressed protein FN3014-S Chr7 22683001 22711000 0 0 Deletion 27999 LOC_Os07g37830 peptidyl-prolyl cis-trans isomerase CYP37, chloroplast precursor, putative, expressed FN3014-S Chr7 22683001 22711000 0 0 Deletion 27999 LOC_Os07g37840 lipase, putative, expressed FN3014-S Chr7 22683001 22711000 0 0 Deletion 27999 LOC_Os07g37850 expressed protein FN3014-S Chr7 22683001 22711000 0 0 Deletion 27999 LOC_Os07g37860 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr7 25737648 25737648 0 0 Insertion 4 INTERGENIC HET FN3014-S Chr7 26887001 26904000 0 0 Deletion 16999 LOC_Os07g45064 Phosphatidylinositol kinase and FAT containing domain protein, putative, expressed FN3014-S Chr7 26887001 26904000 0 0 Deletion 16999 LOC_Os07g45070 FAT domain-containing protein, putative, expressed FN3014-S Chr7 26887001 26904000 0 0 Deletion 16999 LOC_Os07g45074 FAT domain-containing protein, putative, expressed FN3014-S Chr7 27373001 27383000 0 0 Deletion 9999 LOC_Os07g45890 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr7 27373001 27383000 0 0 Deletion 9999 LOC_Os07g45930 transposon protein, putative, unclassified FN3014-S Chr7 28532868 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3014-S Chr7 4836354 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3014-S Chr7 6162001 6173000 0 0 Deletion 10999 LOC_Os07g11190 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr7 6162001 6173000 0 0 Deletion 10999 LOC_Os07g11200 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr7 6162001 6173000 0 0 Deletion 10999 LOC_Os07g11210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr7 6162001 6173000 0 0 Deletion 10999 LOC_Os07g11680 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr7 6368225 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3014-S Chr7 6503001 6529000 0 0 Deletion 25999 LOC_Os07g11770 expressed protein FN3014-S Chr7 6503001 6529000 0 0 Deletion 25999 LOC_Os07g11780 transposon protein, putative, CACTA, En/Spm sub-class FN3014-S Chr7 6503001 6529000 0 0 Deletion 25999 LOC_Os07g11790 terpene synthase, putative, expressed FN3014-S Chr7 6503001 6529000 0 0 Deletion 25999 LOC_Os07g11800 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr7 7629001 7642000 0 0 Deletion 12999 LOC_Os07g13310 RALFL10 - Rapid ALkalinization Factor RALF family protein precursor, putative, expressed FN3014-S Chr7 7629001 7642000 0 0 Deletion 12999 LOC_Os07g13319 hypothetical protein FN3014-S Chr7 7629001 7642000 0 0 Deletion 12999 LOC_Os07g13570 expressed protein FN3014-S Chr7 7847001 7856000 0 0 Deletion 8999 LOC_Os07g13680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr7 7847001 7856000 0 0 Deletion 8999 LOC_Os07g13690 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr7 8094001 8108000 0 0 Deletion 13999 LOC_Os07g14200 retrotransposon protein, putative, Ty3-gypsy subclass FN3014-S Chr7 8094001 8108000 0 0 Deletion 13999 LOC_Os07g14210 retrotransposon protein, putative, unclassified FN3014-S Chr7 8094001 8108000 0 0 Deletion 13999 LOC_Os07g14220 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr7 8094001 8108000 0 0 Deletion 13999 LOC_Os07g14230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr7 8094001 8108000 0 0 Deletion 13999 LOC_Os07g14320 retrotransposon protein, putative, unclassified FN3014-S Chr7 8595001 8616000 0 0 Deletion 20999 LOC_Os07g15000 expressed protein FN3014-S Chr7 8595001 8616000 0 0 Deletion 20999 LOC_Os07g15010 hypothetical protein FN3014-S Chr7 8595001 8616000 0 0 Deletion 20999 LOC_Os07g15020 expressed protein FN3014-S Chr7 8595001 8616000 0 0 Deletion 20999 LOC_Os07g15030 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr7 8595001 8616000 0 0 Deletion 20999 LOC_Os07g16070 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr8 11612001 11634000 0 0 Deletion 21999 LOC_Os08g19450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr8 11612001 11634000 0 0 Deletion 21999 LOC_Os08g19460 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr8 11612001 11634000 0 0 Deletion 21999 LOC_Os08g19470 expressed protein FN3014-S Chr8 11612001 11634000 0 0 Deletion 21999 LOC_Os08g19520 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr8 13674001 13691000 0 0 Deletion 16999 LOC_Os08g22750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr8 13674001 13691000 0 0 Deletion 16999 LOC_Os08g22760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr8 13674001 13691000 0 0 Deletion 16999 LOC_Os08g22770 retrotransposon protein, putative, Ty3-gypsy subclass FN3014-S Chr8 13674001 13691000 0 0 Deletion 16999 LOC_Os08g22780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr8 13778155 Chr5 12302080 0 Translocation 0 LOC_Os08g22910 retrotransposon, putative, centromere-specific FN3014-S Chr8 15794001 15810000 0 0 Deletion 15999 LOC_Os08g25970 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr8 15794001 15810000 0 0 Deletion 15999 LOC_Os08g25980 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr8 15794001 15810000 0 0 Deletion 15999 LOC_Os08g26260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr8 17778001 17804000 0 0 Deletion 25999 LOC_Os08g29040 protein kinase domain containing protein, expressed FN3014-S Chr8 17778001 17804000 0 0 Deletion 25999 LOC_Os08g29050 retrotransposon protein, putative, unclassified FN3014-S Chr8 17778001 17804000 0 0 Deletion 25999 LOC_Os08g29060 retrotransposon protein, putative, unclassified FN3014-S Chr8 17778001 17804000 0 0 Deletion 25999 LOC_Os08g29070 retrotransposon protein, putative, unclassified FN3014-S Chr8 17778001 17804000 0 0 Deletion 25999 LOC_Os08g29080 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr8 17778001 17804000 0 0 Deletion 25999 LOC_Os08g29520 cytochrome b561, putative, expressed FN3014-S Chr8 17915418 17915418 0 0 Insertion 1 upstream_gene_variant HET FN3014-S Chr8 18107001 18123000 0 0 Deletion 15999 LOC_Os08g29540 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr8 18107001 18123000 0 0 Deletion 15999 LOC_Os08g29550 retrotransposon protein, putative, unclassified FN3014-S Chr8 18107001 18123000 0 0 Deletion 15999 LOC_Os08g29560 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr8 18107001 18123000 0 0 Deletion 15999 LOC_Os08g30310 transposon protein, putative, CACTA, En/Spm sub-class FN3014-S Chr8 18579837 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3014-S Chr8 18653001 18673000 0 0 Deletion 19999 LOC_Os08g30310 transposon protein, putative, CACTA, En/Spm sub-class FN3014-S Chr8 18653001 18673000 0 0 Deletion 19999 LOC_Os08g30320 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr8 18653001 18673000 0 0 Deletion 19999 LOC_Os08g30330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr8 20226940 20226940 0 0 Insertion 68 upstream_gene_variant HET FN3014-S Chr8 20522199 20522199 0 0 Insertion 1 downstream_gene_variant HET FN3014-S Chr8 2061001 2070000 0 0 Deletion 8999 LOC_Os08g04240 cysteine-rich repeat secretory protein 55 precursor, putative, expressed FN3014-S Chr8 2061001 2070000 0 0 Deletion 8999 LOC_Os08g04250 cysteine-rich repeat secretory protein 55 precursor, putative, expressed FN3014-S Chr8 2061001 2070000 0 0 Deletion 8999 LOC_Os08g04540 decarboxylase, putative, expressed FN3014-S Chr8 21368001 21391000 0 0 Deletion 22999 LOC_Os08g34090 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr8 21368001 21391000 0 0 Deletion 22999 LOC_Os08g34100 conserved hypothetical protein FN3014-S Chr8 21368001 21391000 0 0 Deletion 22999 LOC_Os08g34110 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3014-S Chr8 2246001 2262000 0 0 Deletion 15999 LOC_Os08g04540 decarboxylase, putative, expressed FN3014-S Chr8 22593874 22593907 0 0 Deletion 33 downstream_gene_variant HET FN3014-S Chr8 23119001 23149000 0 0 Deletion 29999 LOC_Os08g36640 expressed protein FN3014-S Chr8 23119001 23149000 0 0 Deletion 29999 LOC_Os08g36650 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr8 23119001 23149000 0 0 Deletion 29999 LOC_Os08g36660 expressed protein FN3014-S Chr8 23119001 23149000 0 0 Deletion 29999 LOC_Os08g36670 transposon protein, putative, unclassified, expressed FN3014-S Chr8 23119001 23149000 0 0 Deletion 29999 LOC_Os08g36680 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed FN3014-S Chr8 24733001 24756000 0 0 Deletion 22999 LOC_Os08g39170 expressed protein FN3014-S Chr8 24733001 24756000 0 0 Deletion 22999 LOC_Os08g39174 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3014-S Chr8 24733001 24756000 0 0 Deletion 22999 LOC_Os08g39180 OsWAK73 - OsWAK receptor-like protein kinase, expressed FN3014-S Chr8 24733001 24756000 0 0 Deletion 22999 LOC_Os08g40340 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr8 25762001 25780000 0 0 Deletion 17999 LOC_Os08g40700 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr8 25762001 25780000 0 0 Deletion 17999 LOC_Os08g40710 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr8 25762001 25780000 0 0 Deletion 17999 LOC_Os08g40720 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed FN3014-S Chr8 25762001 25780000 0 0 Deletion 17999 LOC_Os08g40730 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr8 25762001 25780000 0 0 Deletion 17999 LOC_Os08g40740 glycosyl hydrolase, putative, expressed FN3014-S Chr8 25762001 25780000 0 0 Deletion 17999 LOC_Os08g41890 microtubule associated protein, putative, expressed FN3014-S Chr8 26259092 26259094 0 0 Deletion 2 INTERGENIC HET FN3014-S Chr8 4486001 4500000 0 0 Deletion 13999 LOC_Os08g07960 mitotic checkpoint protein, putative, expressed FN3014-S Chr8 4486001 4500000 0 0 Deletion 13999 LOC_Os08g08760 ubiquitin family protein, putative, expressed FN3014-S Chr8 7063001 7088000 0 0 Deletion 24999 LOC_Os08g12040 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr8 7063001 7088000 0 0 Deletion 24999 LOC_Os08g13140 hypothetical protein FN3014-S Chr9 11041053 11041053 0 0 Insertion 26 upstream_gene_variant HET FN3014-S Chr9 11551215 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g19300 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr9 11716001 11729000 0 0 Deletion 12999 LOC_Os09g19600 retrotransposon protein, putative, Ty3-gypsy subclass FN3014-S Chr9 11716001 11729000 0 0 Deletion 12999 LOC_Os09g19610 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr9 11716001 11729000 0 0 Deletion 12999 LOC_Os09g19620 retrotransposon protein, putative, unclassified FN3014-S Chr9 11716001 11729000 0 0 Deletion 12999 LOC_Os09g20000 heavy metal-associated domain containing protein, expressed FN3014-S Chr9 13319001 13341000 0 0 Deletion 21999 LOC_Os09g22010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr9 13319001 13341000 0 0 Deletion 21999 LOC_Os09g22020 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr9 13319001 13341000 0 0 Deletion 21999 LOC_Os09g22030 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr9 13319001 13341000 0 0 Deletion 21999 LOC_Os09g22110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr9 13393001 13406000 0 0 Deletion 12999 LOC_Os09g22120 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr9 13393001 13406000 0 0 Deletion 12999 LOC_Os09g22130 expressed protein FN3014-S Chr9 13393001 13406000 0 0 Deletion 12999 LOC_Os09g22140 expressed protein FN3014-S Chr9 13393001 13406000 0 0 Deletion 12999 LOC_Os09g23110 transporter family protein, putative, expressed FN3014-S Chr9 18267077 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3014-S Chr9 19312171 19312173 0 0 Deletion 2 INTERGENIC HET FN3014-S Chr9 21806557 Chr5 6399594 0 Translocation 0 FN3014-S Chr9 2203001 2220000 0 0 Deletion 16999 LOC_Os09g04190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr9 2203001 2220000 0 0 Deletion 16999 LOC_Os09g04200 transposon protein, putative, CACTA, En/Spm sub-class FN3014-S Chr9 2203001 2220000 0 0 Deletion 16999 LOC_Os09g04210 hydrolase/ zinc ion binding protein, putative, expressed FN3014-S Chr9 22448001 22496000 0 0 Deletion 47999 LOC_Os09g39110 vignain precursor, putative, expressed FN3014-S Chr9 22448001 22496000 0 0 Deletion 47999 LOC_Os09g39120 thiol protease SEN102 precursor, putative, expressed FN3014-S Chr9 22448001 22496000 0 0 Deletion 47999 LOC_Os09g39130 expressed protein FN3014-S Chr9 22448001 22496000 0 0 Deletion 47999 LOC_Os09g39140 vignain precursor, putative, expressed FN3014-S Chr9 22448001 22496000 0 0 Deletion 47999 LOC_Os09g39150 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr9 22448001 22496000 0 0 Deletion 47999 LOC_Os09g39160 thiol protease SEN102 precursor, putative, expressed FN3014-S Chr9 22448001 22496000 0 0 Deletion 47999 LOC_Os09g39170 cysteine proteinase COT44 precursor, putative, expressed FN3014-S Chr9 2768184 2768186 0 0 Deletion 2 intergenic_region HET FN3014-S Chr9 3227688 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3014-S Chr9 3754024 3754039 0 0 Deletion 15 INTRON HET FN3014-S Chr9 4237001 4254000 0 0 Deletion 16999 LOC_Os09g08190 sulfotransferase domain containing protein, expressed FN3014-S Chr9 4237001 4254000 0 0 Deletion 16999 LOC_Os09g08300 expressed protein FN3014-S Chr9 4315001 4325000 0 0 Deletion 9999 LOC_Os09g08350 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr9 4315001 4325000 0 0 Deletion 9999 LOC_Os09g08430 ribosomal protein L22, putative, expressed FN3014-S Chr9 4760001 4795000 0 0 Deletion 34999 LOC_Os09g08960 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr9 4760001 4795000 0 0 Deletion 34999 LOC_Os09g08970 expressed protein FN3014-S Chr9 4760001 4795000 0 0 Deletion 34999 LOC_Os09g08980 retrotransposon protein, putative, unclassified FN3014-S Chr9 4760001 4795000 0 0 Deletion 34999 LOC_Os09g08990 cytochrome P450, putative, expressed FN3014-S Chr9 4760001 4795000 0 0 Deletion 34999 LOC_Os09g09000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr9 4898974 4898974 0 0 Insertion 66 upstream_gene_variant HET FN3014-S Chr9 5177773 5177773 0 0 Insertion 10 upstream_gene_variant HET FN3014-S Chr9 607001 621000 0 0 Deletion 13999 LOC_Os09g01910 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3014-S Chr9 607001 621000 0 0 Deletion 13999 LOC_Os09g01980 retrotransposon protein, putative, unclassified, expressed FN3014-S Chr9 9120001 9135000 0 0 Deletion 14999 LOC_Os09g15120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr9 9168001 9191000 0 0 Deletion 22999 LOC_Os09g15120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr9 9168001 9191000 0 0 Deletion 22999 LOC_Os09g15130 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3014-S Chr9 9168001 9191000 0 0 Deletion 22999 LOC_Os09g15140 retrotransposon protein, putative, unclassified, expressed