FN3015-S Chr1 11950963 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3015-S Chr1 11983001 11999000 0 0 Deletion 15999 LOC_Os01g22590 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr1 12457320 12457320 0 0 Insertion 1 intron_variant HET FN3015-S Chr1 12698015 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3015-S Chr1 12724036 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3015-S Chr1 12724038 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g22620 retrotransposon protein, putative, unclassified FN3015-S Chr1 1274528 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3015-S Chr1 14573001 14597000 0 0 Deletion 23999 LOC_Os01g25710 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr1 14573001 14597000 0 0 Deletion 23999 LOC_Os01g25720 disease resistance protein RGA4, putative, expressed FN3015-S Chr1 14573001 14597000 0 0 Deletion 23999 LOC_Os01g25730 retrotransposon protein, putative, unclassified FN3015-S Chr1 14573001 14597000 0 0 Deletion 23999 LOC_Os01g25740 powdery mildew resistance protein PM3F, putative, expressed FN3015-S Chr1 15929001 15973000 0 0 Deletion 43999 LOC_Os01g28450 SCP-like extracellular protein, expressed FN3015-S Chr1 15929001 15973000 0 0 Deletion 43999 LOC_Os01g28474 transferase family protein, putative, expressed FN3015-S Chr1 15929001 15973000 0 0 Deletion 43999 LOC_Os01g28490 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3015-S Chr1 15929001 15973000 0 0 Deletion 43999 LOC_Os01g28500 SCP-like extracellular protein, expressed FN3015-S Chr1 15929001 15973000 0 0 Deletion 43999 LOC_Os01g28510 expressed protein FN3015-S Chr1 15929001 15973000 0 0 Deletion 43999 LOC_Os01g28520 OsFBX8 - F-box domain containing protein, expressed FN3015-S Chr1 15929001 15973000 0 0 Deletion 43999 LOC_Os01g28530 retrotransposon protein, putative, Ty3-gypsy subclass FN3015-S Chr1 15929001 15973000 0 0 Deletion 43999 LOC_Os01g28760 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3015-S Chr1 16851211 16851893 0 0 Deletion 682 intergenic_region HET FN3015-S Chr1 17338305 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3015-S Chr1 19413001 19433000 0 0 Deletion 19999 LOC_Os01g35070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr1 19413001 19433000 0 0 Deletion 19999 LOC_Os01g35080 retrotransposon protein, putative, unclassified FN3015-S Chr1 19413001 19433000 0 0 Deletion 19999 LOC_Os01g35090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr1 20617483 20617484 0 0 Deletion 1 upstream_gene_variant HET FN3015-S Chr1 21939212 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g39020 HSF-type DNA-binding domain containing protein, expressed FN3015-S Chr1 29396001 29415000 0 0 Deletion 18999 LOC_Os01g51154 single myb histone, putative, expressed FN3015-S Chr1 29396001 29415000 0 0 Deletion 18999 LOC_Os01g51170 glycylpeptide N-tetradecanoyltransferase 1, putative, expressed FN3015-S Chr1 30436713 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3015-S Chr1 33670341 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3015-S Chr1 37934840 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3015-S Chr1 38400213 38400215 0 0 Deletion 2 INTRON HOMO FN3015-S Chr1 9428321 9428322 0 0 Deletion 1 INTRON HET FN3015-S Chr10 12138001 12150000 0 0 Deletion 11999 LOC_Os10g23270 transposon protein, putative, unclassified FN3015-S Chr10 12138001 12150000 0 0 Deletion 11999 LOC_Os10g24210 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr10 12522469 12522473 0 0 Deletion 4 frameshift_variant HET LOC_Os10g24420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr10 15506178 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3015-S Chr10 15952374 15952375 0 0 Deletion 1 upstream_gene_variant HET FN3015-S Chr10 17168622 Chr2 8469346 0 Translocation 0 FN3015-S Chr10 17168625 Chr2 8468548 0 Translocation 0 FN3015-S Chr10 17829001 17842000 0 0 Deletion 12999 LOC_Os10g34602 csAtPR5, putative, expressed FN3015-S Chr10 3219385 3219386 0 0 Deletion 1 downstream_gene_variant HET FN3015-S Chr10 4403001 4421000 0 0 Deletion 17999 LOC_Os10g08170 expressed protein FN3015-S Chr10 4403001 4421000 0 0 Deletion 17999 LOC_Os10g08180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr10 4403001 4421000 0 0 Deletion 17999 LOC_Os10g08250 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr10 4685001 4733000 0 0 Deletion 47999 LOC_Os10g08640 expressed protein FN3015-S Chr10 4685001 4733000 0 0 Deletion 47999 LOC_Os10g08650 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr10 4685001 4733000 0 0 Deletion 47999 LOC_Os10g08660 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr10 4685001 4733000 0 0 Deletion 47999 LOC_Os10g08670 chalcone synthase, putative, expressed FN3015-S Chr10 4685001 4733000 0 0 Deletion 47999 LOC_Os10g08680 conserved hypothetical protein FN3015-S Chr10 4685001 4733000 0 0 Deletion 47999 LOC_Os10g08690 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr10 4685001 4733000 0 0 Deletion 47999 LOC_Os10g08696 retrotransposon protein, putative, Ty3-gypsy subclass FN3015-S Chr10 4685001 4733000 0 0 Deletion 47999 LOC_Os10g08702 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr10 4685001 4733000 0 0 Deletion 47999 LOC_Os10g08710 chalcone synthase, putative, expressed FN3015-S Chr10 4685001 4733000 0 0 Deletion 47999 LOC_Os10g08720 hypothetical protein FN3015-S Chr10 4685001 4733000 0 0 Deletion 47999 LOC_Os10g09090 cytochrome P450, putative, expressed FN3015-S Chr10 614129 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3015-S Chr10 6292001 6315000 0 0 Deletion 22999 LOC_Os10g11370 LTPL87 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed FN3015-S Chr10 6292001 6315000 0 0 Deletion 22999 LOC_Os10g11384 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr10 6292001 6315000 0 0 Deletion 22999 LOC_Os10g11889 expressed protein FN3015-S Chr10 7228481 7228482 0 0 Deletion 1 upstream_gene_variant HET FN3015-S Chr10 754040 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3015-S Chr10 754051 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3015-S Chr11 10286058 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3015-S Chr11 10295001 10345000 0 0 Deletion 49999 LOC_Os11g18280 retrotransposon protein, putative, unclassified FN3015-S Chr11 10295001 10345000 0 0 Deletion 49999 LOC_Os11g18290 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr11 10295001 10345000 0 0 Deletion 49999 LOC_Os11g18300 expressed protein FN3015-S Chr11 10295001 10345000 0 0 Deletion 49999 LOC_Os11g18310 cycloartenol synthase, putative FN3015-S Chr11 10295001 10345000 0 0 Deletion 49999 LOC_Os11g18320 expressed protein FN3015-S Chr11 10295001 10345000 0 0 Deletion 49999 LOC_Os11g18340 cycloartenol synthase, putative, expressed FN3015-S Chr11 10295001 10345000 0 0 Deletion 49999 LOC_Os11g18420 retrotransposon protein, putative, Ty3-gypsy subclass FN3015-S Chr11 11310001 11329000 0 0 Deletion 18999 LOC_Os11g19630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr11 11310001 11329000 0 0 Deletion 18999 LOC_Os11g19640 retrotransposon protein, putative, Ty3-gypsy subclass FN3015-S Chr11 11310001 11329000 0 0 Deletion 18999 LOC_Os11g19650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr11 11310001 11329000 0 0 Deletion 18999 LOC_Os11g19660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr11 11310001 11329000 0 0 Deletion 18999 LOC_Os11g19820 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr11 21085001 21113000 0 0 Deletion 27999 LOC_Os11g35910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr11 21085001 21113000 0 0 Deletion 27999 LOC_Os11g35920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr11 21085001 21113000 0 0 Deletion 27999 LOC_Os11g35930 chalcone synthase, putative, expressed FN3015-S Chr11 21085001 21113000 0 0 Deletion 27999 LOC_Os11g35940 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr11 25416001 25429000 0 0 Deletion 12999 LOC_Os11g42200 laccase precursor protein, putative, expressed FN3015-S Chr11 25416001 25429000 0 0 Deletion 12999 LOC_Os11g42210 expressed protein FN3015-S Chr11 25416001 25429000 0 0 Deletion 12999 LOC_Os11g42630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr11 26625001 26643000 0 0 Deletion 17999 LOC_Os11g44060 retrotransposon protein, putative, Ty3-gypsy subclass FN3015-S Chr11 26625001 26643000 0 0 Deletion 17999 LOC_Os11g44070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr11 26625001 26643000 0 0 Deletion 17999 LOC_Os11g44084 transposon protein, putative, CACTA, En/Spm sub-class FN3015-S Chr11 26625001 26643000 0 0 Deletion 17999 LOC_Os11g44100 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr11 26625001 26643000 0 0 Deletion 17999 LOC_Os11g44110 expressed protein FN3015-S Chr11 26625001 26643000 0 0 Deletion 17999 LOC_Os12g02330 LTPL13 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3015-S Chr11 6734283 6734284 0 0 Deletion 1 downstream_gene_variant HET FN3015-S Chr11 8246314 8246316 0 0 Deletion 2 intron_variant HET FN3015-S Chr11 8484001 8504000 0 0 Deletion 19999 LOC_Os11g15080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr11 8484001 8504000 0 0 Deletion 19999 LOC_Os11g15090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr11 8484001 8504000 0 0 Deletion 19999 LOC_Os11g15100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr11 8484001 8504000 0 0 Deletion 19999 LOC_Os11g15220 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr11 9709001 9727000 0 0 Deletion 17999 LOC_Os11g17420 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr11 9709001 9727000 0 0 Deletion 17999 LOC_Os11g17430 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr11 9709001 9727000 0 0 Deletion 17999 LOC_Os11g17440 enoyl-CoA hydratase/isomerase family protein, expressed FN3015-S Chr11 9709001 9727000 0 0 Deletion 17999 LOC_Os11g17840 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr12 12061963 12061963 0 0 Insertion 1 downstream_gene_variant HET FN3015-S Chr12 12245001 12258000 0 0 Deletion 12999 LOC_Os12g21770 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr12 12245001 12258000 0 0 Deletion 12999 LOC_Os12g21780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr12 14498624 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3015-S Chr12 14972322 14972322 0 0 Insertion 2 upstream_gene_variant HET FN3015-S Chr12 1704001 1726000 0 0 Deletion 21999 LOC_Os12g04060 transcription initiation factor, putative, expressed FN3015-S Chr12 1704001 1726000 0 0 Deletion 21999 LOC_Os12g04070 expressed protein FN3015-S Chr12 1704001 1726000 0 0 Deletion 21999 LOC_Os12g04080 transferase family protein, putative, expressed FN3015-S Chr12 1704001 1726000 0 0 Deletion 21999 LOC_Os12g04090 zinc finger, C3HC4 type domain containing protein FN3015-S Chr12 1704001 1726000 0 0 Deletion 21999 LOC_Os12g04100 cytochrome P450, putative, expressed FN3015-S Chr12 1704001 1726000 0 0 Deletion 21999 LOC_Os12g04110 pentatricopeptide, putative, expressed FN3015-S Chr12 20440677 20440678 0 0 Deletion 1 downstream_gene_variant HET FN3015-S Chr12 20683500 20683500 0 0 Insertion 2 downstream_gene_variant HET FN3015-S Chr12 21729001 21759000 0 0 Deletion 29999 LOC_Os12g35720 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr12 21729001 21759000 0 0 Deletion 29999 LOC_Os12g35730 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr12 2183457 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3015-S Chr12 21904673 21904696 0 0 Deletion 23 intergenic_region HET FN3015-S Chr12 24418001 24450000 0 0 Deletion 31999 LOC_Os12g39580 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr12 24418001 24450000 0 0 Deletion 31999 LOC_Os12g39590 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr12 24418001 24450000 0 0 Deletion 31999 LOC_Os12g39600 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr12 24418001 24450000 0 0 Deletion 31999 LOC_Os12g39610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr12 25294299 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3015-S Chr12 4407609 4407610 0 0 Deletion 1 downstream_gene_variant HET FN3015-S Chr12 8119001 8144000 0 0 Deletion 24999 LOC_Os12g14270 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr12 8119001 8144000 0 0 Deletion 24999 LOC_Os12g14280 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr12 8119001 8144000 0 0 Deletion 24999 LOC_Os12g14290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr12 8119001 8144000 0 0 Deletion 24999 LOC_Os12g14480 cysteine-rich receptor-like protein kinase 23 precursor, putative, expressed FN3015-S Chr12 8714524 8714529 0 0 Deletion 5 INTERGENIC HOMO FN3015-S Chr12 9221001 9232000 0 0 Deletion 10999 LOC_Os12g16160 CCT motif family protein, expressed FN3015-S Chr12 9221001 9232000 0 0 Deletion 10999 LOC_Os12g16200 glutathione synthetase, chloroplast precursor, putative, expressed FN3015-S Chr2 1246392 1497430 0 0 Inversion 251038 FN3015-S Chr2 1246401 1497436 0 0 Inversion 251035 FN3015-S Chr2 12757219 Chr1 38645014 0 Translocation 0 FN3015-S Chr2 12757312 Chr1 38645012 0 Translocation 0 FN3015-S Chr2 12760001 12778000 0 0 Deletion 17999 LOC_Os02g21520 chalcone isomerase 3, putative, expressed FN3015-S Chr2 12760001 12778000 0 0 Deletion 17999 LOC_Os02g21530 expressed protein FN3015-S Chr2 1298553 G-A 0 0 Single Base Substitution 0 SPLICE_SITE_ACCEPTOR HET LOC_Os02g03240 transposon protein, putative, unclassified, expressed FN3015-S Chr2 13531001 13560000 0 0 Deletion 28999 LOC_Os02g22720 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr2 13531001 13560000 0 0 Deletion 28999 LOC_Os02g22730 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr2 13531001 13560000 0 0 Deletion 28999 LOC_Os02g22740 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr2 13531001 13560000 0 0 Deletion 28999 LOC_Os02g22750 expressed protein FN3015-S Chr2 13531001 13560000 0 0 Deletion 28999 LOC_Os02g22760 retrotransposon protein, putative, LINE subclass, expressed FN3015-S Chr2 13531001 13560000 0 0 Deletion 28999 LOC_Os02g22770 expressed protein FN3015-S Chr2 13531001 13560000 0 0 Deletion 28999 LOC_Os02g23900 expressed protein FN3015-S Chr2 15047001 15070000 0 0 Deletion 22999 LOC_Os02g25720 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr2 15047001 15070000 0 0 Deletion 22999 LOC_Os02g25730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr2 15047001 15070000 0 0 Deletion 22999 LOC_Os02g25740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr2 15047001 15070000 0 0 Deletion 22999 LOC_Os02g25930 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr2 20405294 20405295 0 0 Deletion 1 downstream_gene_variant HET FN3015-S Chr2 23658001 23688000 0 0 Deletion 29999 LOC_Os02g39170 GDSL-like lipase/acylhydrolase, putative, expressed FN3015-S Chr2 23658001 23688000 0 0 Deletion 29999 LOC_Os02g39180 expressed protein FN3015-S Chr2 23658001 23688000 0 0 Deletion 29999 LOC_Os02g39190 expressed protein FN3015-S Chr2 23658001 23688000 0 0 Deletion 29999 LOC_Os02g39200 nucleotide-sugar transporter family protein, putative, expressed FN3015-S Chr2 23658001 23688000 0 0 Deletion 29999 LOC_Os02g39210 expressed protein FN3015-S Chr2 23658001 23688000 0 0 Deletion 29999 LOC_Os02g39930 OsTIL-1 Temperature-induced lipocalin-1, expressed FN3015-S Chr2 27574813 27574813 0 0 Insertion 1 downstream_gene_variant HET FN3015-S Chr2 29566001 29581000 0 0 Deletion 14999 LOC_Os02g48620 tetratricopeptide repeat, putative, expressed FN3015-S Chr2 29566257 29836730 0 0 Inversion 270473 LOC_Os02g48740 fimbrin-like protein 2, putative, expressed FN3015-S Chr2 30204504 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3015-S Chr2 31336745 31336780 0 0 Deletion 35 upstream_gene_variant HET FN3015-S Chr2 33733933 33733944 0 0 Deletion 11 INTERGENIC HET FN3015-S Chr2 3852592 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3015-S Chr2 3899198 3899198 0 0 Insertion 1 frameshift_variant HET LOC_Os02g07530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr2 677610 Chr1 28337514 0 Translocation 0 FN3015-S Chr2 8936001 8955000 0 0 Deletion 18999 LOC_Os02g15820 extra-large G-protein-related, putative, expressed FN3015-S Chr2 8936001 8955000 0 0 Deletion 18999 LOC_Os02g15830 expressed protein FN3015-S Chr2 8936001 8955000 0 0 Deletion 18999 LOC_Os02g15900 50S ribosomal protein L21, chloroplast precursor, putative, expressed FN3015-S Chr3 12737380 Chr1 15903698 0 Translocation 0 FN3015-S Chr3 13388576 13388580 0 0 Deletion 4 upstream_gene_variant HET FN3015-S Chr3 20105001 20125000 0 0 Deletion 19999 LOC_Os03g36260 expressed protein FN3015-S Chr3 20105001 20125000 0 0 Deletion 19999 LOC_Os03g36270 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr3 20105001 20125000 0 0 Deletion 19999 LOC_Os03g36279 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr3 20105001 20125000 0 0 Deletion 19999 LOC_Os03g36570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr3 25403113 25403114 0 0 Deletion 1 frameshift_variant&stop_lost&splice_region_variant HET LOC_Os03g45000 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr3 26132675 26132679 0 0 Deletion 4 frameshift_variant HET LOC_Os03g46220 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr3 28269001 28288000 0 0 Deletion 18999 LOC_Os03g49650 retrotransposon protein, putative, Ty1-copia subclass FN3015-S Chr3 28269001 28288000 0 0 Deletion 18999 LOC_Os03g49660 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3015-S Chr3 28269001 28288000 0 0 Deletion 18999 LOC_Os03g49850 hypothetical protein FN3015-S Chr3 28724001 28739000 0 0 Deletion 14999 LOC_Os03g50350 coatomer alpha subunit, putative, expressed FN3015-S Chr3 28724001 28739000 0 0 Deletion 14999 LOC_Os03g50920 ZF-HD protein dimerisation region containing protein, expressed FN3015-S Chr3 29250001 29266000 0 0 Deletion 15999 LOC_Os03g51140 HEAT repeat family protein, putative, expressed FN3015-S Chr3 30122001 30148000 0 0 Deletion 25999 LOC_Os03g52500 expressed protein FN3015-S Chr3 30122001 30148000 0 0 Deletion 25999 LOC_Os03g52510 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr3 30122001 30148000 0 0 Deletion 25999 LOC_Os03g52520 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr3 30122001 30148000 0 0 Deletion 25999 LOC_Os03g52530 retrotransposon protein, putative, Ty3-gypsy subclass FN3015-S Chr3 30122001 30148000 0 0 Deletion 25999 LOC_Os03g52540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr3 30122001 30148000 0 0 Deletion 25999 LOC_Os03g52550 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr3 30979550 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3015-S Chr3 31804952 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3015-S Chr3 32774982 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3015-S Chr3 35081994 35081995 0 0 Deletion 1 upstream_gene_variant HET FN3015-S Chr3 36045962 36045964 0 0 Deletion 2 downstream_gene_variant HET FN3015-S Chr3 8572312 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3015-S Chr4 10240001 10262000 0 0 Deletion 21999 LOC_Os04g18540 hAT dimerisation domain containing protein, putative, expressed FN3015-S Chr4 10240001 10262000 0 0 Deletion 21999 LOC_Os04g18550 expressed protein FN3015-S Chr4 10240001 10262000 0 0 Deletion 21999 LOC_Os04g18559 retrotransposon protein, putative, unclassified FN3015-S Chr4 10240001 10262000 0 0 Deletion 21999 LOC_Os04g18570 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr4 10240001 10262000 0 0 Deletion 21999 LOC_Os04g18580 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr4 12703001 12720000 0 0 Deletion 16999 LOC_Os04g22450 expressed protein FN3015-S Chr4 12703001 12720000 0 0 Deletion 16999 LOC_Os04g22460 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr4 12703001 12720000 0 0 Deletion 16999 LOC_Os04g22470 SHR5-receptor-like kinase, putative, expressed FN3015-S Chr4 12703001 12720000 0 0 Deletion 16999 LOC_Os04g22550 retrotransposon protein, putative, unclassified FN3015-S Chr4 13254001 13290000 0 0 Deletion 35999 LOC_Os04g23240 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr4 13254001 13290000 0 0 Deletion 35999 LOC_Os04g23250 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr4 13254001 13290000 0 0 Deletion 35999 LOC_Os04g23260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr4 13254001 13290000 0 0 Deletion 35999 LOC_Os04g23270 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr4 13254001 13290000 0 0 Deletion 35999 LOC_Os04g23280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr4 133001 165000 0 0 Deletion 31999 LOC_Os04g01190 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr4 133001 165000 0 0 Deletion 31999 LOC_Os04g01200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr4 133001 165000 0 0 Deletion 31999 LOC_Os04g01210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr4 133001 165000 0 0 Deletion 31999 LOC_Os04g03350 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr4 1439001 1454000 0 0 Deletion 14999 LOC_Os04g03360 jacalin-like lectin domain containing protein, expressed FN3015-S Chr4 1439001 1454000 0 0 Deletion 14999 LOC_Os04g03370 cysteine-rich receptor-like protein kinase 41 precursor, putative, expressed FN3015-S Chr4 1439001 1454000 0 0 Deletion 14999 LOC_Os04g03380 legume lectins beta domain containing protein, putative, expressed FN3015-S Chr4 1439001 1454000 0 0 Deletion 14999 LOC_Os04g03440 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr4 15940001 15981000 0 0 Deletion 40999 LOC_Os04g26960 terpene synthase, putative, expressed FN3015-S Chr4 15940001 15981000 0 0 Deletion 40999 LOC_Os04g26970 retrotransposon protein, putative, unclassified FN3015-S Chr4 15940001 15981000 0 0 Deletion 40999 LOC_Os04g26980 terpene synthase, putative, expressed FN3015-S Chr4 15940001 15981000 0 0 Deletion 40999 LOC_Os04g26994 retrotransposon protein, putative, unclassified FN3015-S Chr4 16925001 16940000 0 0 Deletion 14999 LOC_Os04g28600 male sterility protein, putative, expressed FN3015-S Chr4 16925001 16940000 0 0 Deletion 14999 LOC_Os04g28680 male sterility protein, putative, expressed FN3015-S Chr4 1793001 1806000 0 0 Deletion 12999 LOC_Os04g03940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr4 1793001 1806000 0 0 Deletion 12999 LOC_Os04g03950 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr4 1793001 1806000 0 0 Deletion 12999 LOC_Os04g04180 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr4 1957115 1957116 0 0 Deletion 1 frameshift_variant HET LOC_Os04g04200 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr4 27901447 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3015-S Chr4 31469951 31470018 0 0 Deletion 67 upstream_gene_variant HET FN3015-S Chr4 33143236 33143242 0 0 Deletion 6 INTERGENIC HOMO FN3015-S Chr4 4983001 5007000 0 0 Deletion 23999 LOC_Os04g09370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr4 4983001 5007000 0 0 Deletion 23999 LOC_Os04g09380 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3015-S Chr4 4983001 5007000 0 0 Deletion 23999 LOC_Os04g09390 HEV3 - Hevein family protein precursor, expressed FN3015-S Chr4 4983001 5007000 0 0 Deletion 23999 LOC_Os04g09670 O-methyltransferase, putative, expressed FN3015-S Chr4 8777001 8810000 0 0 Deletion 32999 LOC_Os04g16160 expressed protein FN3015-S Chr4 8777001 8810000 0 0 Deletion 32999 LOC_Os04g16170 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr4 8777001 8810000 0 0 Deletion 32999 LOC_Os04g16180 retrotransposon protein, putative, unclassified FN3015-S Chr4 8777001 8810000 0 0 Deletion 32999 LOC_Os04g16190 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr4 8777001 8810000 0 0 Deletion 32999 LOC_Os04g16200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr4 8777001 8810000 0 0 Deletion 32999 LOC_Os04g16220 retrotransposon protein, putative, Ty3-gypsy subclass FN3015-S Chr4 9988432 9988432 0 0 Insertion 1 upstream_gene_variant HET FN3015-S Chr5 11410351 11410351 0 0 Insertion 3 downstream_gene_variant HET FN3015-S Chr5 13043001 13079000 0 0 Deletion 35999 LOC_Os05g22930 CAAX amino terminal protease family protein, putative, expressed FN3015-S Chr5 13043001 13079000 0 0 Deletion 35999 LOC_Os05g22940 acetyl-CoA carboxylase, putative, expressed FN3015-S Chr5 13043001 13079000 0 0 Deletion 35999 LOC_Os05g23490 expressed protein FN3015-S Chr5 15782001 15798000 0 0 Deletion 15999 LOC_Os05g27130 transposon protein, putative, CACTA, En/Spm sub-class FN3015-S Chr5 15782001 15798000 0 0 Deletion 15999 LOC_Os05g27140 transposon protein, putative, CACTA, En/Spm sub-class FN3015-S Chr5 17412001 17428000 0 0 Deletion 15999 LOC_Os05g30100 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr5 17412001 17428000 0 0 Deletion 15999 LOC_Os05g31530 disease resistance protein RGA4, putative, expressed FN3015-S Chr5 18669001 18679000 0 0 Deletion 9999 LOC_Os05g32050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr5 18669001 18679000 0 0 Deletion 9999 LOC_Os05g32890 response regulator receiver domain containing protein, expressed FN3015-S Chr5 2429594 2429594 0 0 Insertion 1 frameshift_variant HET LOC_Os05g05000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr5 26107001 26127000 0 0 Deletion 19999 LOC_Os05g44922 6-phosphofructokinase, putative, expressed FN3015-S Chr5 26107001 26127000 0 0 Deletion 19999 LOC_Os05g44930 receptor-like protein kinase, putative, expressed FN3015-S Chr5 26107001 26127000 0 0 Deletion 19999 LOC_Os05g44940 protein kinase domain containing protein, expressed FN3015-S Chr5 5207897 5207897 0 0 Insertion 2 INTERGENIC HET FN3015-S Chr5 5234037 5234037 0 0 Insertion 1 INTERGENIC HOMO FN3015-S Chr5 7214283 G-C 0 0 Single Base Substitution 0 INTRON HET FN3015-S Chr5 7866001 7895000 0 0 Deletion 28999 LOC_Os05g14090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr5 7866001 7895000 0 0 Deletion 28999 LOC_Os05g14100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr5 7866001 7895000 0 0 Deletion 28999 LOC_Os05g14110 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr5 7866001 7895000 0 0 Deletion 28999 LOC_Os05g14120 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr5 7866001 7895000 0 0 Deletion 28999 LOC_Os05g14130 ZOS5-05 - C2H2 zinc finger protein, expressed FN3015-S Chr5 8231001 8252000 0 0 Deletion 20999 LOC_Os05g14540 hypothetical protein FN3015-S Chr5 9011001 9031000 0 0 Deletion 19999 LOC_Os05g15970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr5 9011001 9031000 0 0 Deletion 19999 LOC_Os05g15980 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr5 9011001 9031000 0 0 Deletion 19999 LOC_Os05g15990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr5 9011001 9031000 0 0 Deletion 19999 LOC_Os05g16250 expressed protein FN3015-S Chr6 10303215 10303215 0 0 Insertion 1 upstream_gene_variant HET FN3015-S Chr6 12116001 12149000 0 0 Deletion 32999 LOC_Os06g20970 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr6 12116001 12149000 0 0 Deletion 32999 LOC_Os06g20980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr6 12116001 12149000 0 0 Deletion 32999 LOC_Os06g20990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr6 12116001 12149000 0 0 Deletion 32999 LOC_Os06g21000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr6 12116001 12149000 0 0 Deletion 32999 LOC_Os06g21010 transposon protein, putative, unclassified, expressed FN3015-S Chr6 12116001 12149000 0 0 Deletion 32999 LOC_Os06g21020 methyltransferase, putative, expressed FN3015-S Chr6 12116001 12149000 0 0 Deletion 32999 LOC_Os06g21030 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr6 12116001 12149000 0 0 Deletion 32999 LOC_Os06g21250 glycine rich protein family protein, putative, expressed FN3015-S Chr6 12287001 12310000 0 0 Deletion 22999 LOC_Os06g21260 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr6 12287001 12310000 0 0 Deletion 22999 LOC_Os06g21270 glycine rich protein family protein, putative, expressed FN3015-S Chr6 12287001 12310000 0 0 Deletion 22999 LOC_Os06g21280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr6 12287001 12310000 0 0 Deletion 22999 LOC_Os06g21290 expressed protein FN3015-S Chr6 12287001 12310000 0 0 Deletion 22999 LOC_Os06g21300 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr6 15027955 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os06g25730 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr6 16552001 16577000 0 0 Deletion 24999 LOC_Os06g29060 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr6 16552001 16577000 0 0 Deletion 24999 LOC_Os06g29070 retrotransposon protein, putative, unclassified FN3015-S Chr6 16552001 16577000 0 0 Deletion 24999 LOC_Os06g29440 expressed protein FN3015-S Chr6 17041001 17058000 0 0 Deletion 16999 LOC_Os06g29710 OsFBD12 - F-box and FBD domain containing protein, expressed FN3015-S Chr6 17041001 17058000 0 0 Deletion 16999 LOC_Os06g30060 expressed protein FN3015-S Chr6 22298221 22298239 0 0 Deletion 18 INTRON HET FN3015-S Chr6 23209053 23209053 0 0 Insertion 1 upstream_gene_variant HET FN3015-S Chr6 23358762 Chr1 15903707 0 Translocation 0 FN3015-S Chr6 23359415 Chr3 12746207 0 Translocation 0 FN3015-S Chr6 23539623 Chr2 10935360 0 Translocation 0 LOC_Os02g18760 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr6 24302592 24408171 0 0 Inversion 105579 FN3015-S Chr6 24302595 Chr2 32926349 0 Translocation 0 FN3015-S Chr6 24408172 Chr2 32915130 0 Translocation 0 FN3015-S Chr6 24643001 24673000 0 0 Deletion 29999 LOC_Os06g41190 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3015-S Chr6 24643001 24673000 0 0 Deletion 29999 LOC_Os06g41200 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3015-S Chr6 24643001 24673000 0 0 Deletion 29999 LOC_Os06g41210 hypothetical protein FN3015-S Chr6 25446001 25475000 0 0 Deletion 28999 LOC_Os06g42360 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr6 25446001 25475000 0 0 Deletion 28999 LOC_Os06g42370 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr6 25446001 25475000 0 0 Deletion 28999 LOC_Os06g42380 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr6 25446001 25475000 0 0 Deletion 28999 LOC_Os06g45140 bZIP transcription factor domain containing protein, expressed FN3015-S Chr6 27240716 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3015-S Chr6 29505563 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3015-S Chr6 3721001 3759000 0 0 Deletion 37999 LOC_Os06g07700 expressed protein FN3015-S Chr6 3721001 3759000 0 0 Deletion 37999 LOC_Os06g07710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr6 3721001 3759000 0 0 Deletion 37999 LOC_Os06g07720 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr6 3721001 3759000 0 0 Deletion 37999 LOC_Os06g07730 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr6 3721001 3759000 0 0 Deletion 37999 LOC_Os06g07740 myb-like DNA-binding domain, SHAQKYF class family protein, expressed FN3015-S Chr6 3721001 3759000 0 0 Deletion 37999 LOC_Os06g07750 expressed protein FN3015-S Chr6 3721001 3759000 0 0 Deletion 37999 LOC_Os06g08270 expressed protein FN3015-S Chr6 4909959 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g09650 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr6 7425702 7425702 0 0 Insertion 64 upstream_gene_variant HET FN3015-S Chr6 9112001 9132000 0 0 Deletion 19999 LOC_Os06g16020 expressed protein FN3015-S Chr6 9112001 9132000 0 0 Deletion 19999 LOC_Os06g16030 amidase family protein, putative, expressed FN3015-S Chr6 9112001 9132000 0 0 Deletion 19999 LOC_Os06g16040 expressed protein FN3015-S Chr6 9112001 9132000 0 0 Deletion 19999 LOC_Os06g16050 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr7 10342001 10361000 0 0 Deletion 18999 LOC_Os07g17510 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr7 10342001 10361000 0 0 Deletion 18999 LOC_Os07g17520 expressed protein FN3015-S Chr7 10342001 10361000 0 0 Deletion 18999 LOC_Os07g17530 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr7 10342001 10361000 0 0 Deletion 18999 LOC_Os07g17950 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr7 11941001 11954000 0 0 Deletion 12999 LOC_Os07g20680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr7 11941001 11954000 0 0 Deletion 12999 LOC_Os07g22350 glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed FN3015-S Chr7 14679001 14695000 0 0 Deletion 15999 LOC_Os07g25630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr7 14679001 14695000 0 0 Deletion 15999 LOC_Os07g26020 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr7 15974001 15988000 0 0 Deletion 13999 LOC_Os07g27430 expressed protein FN3015-S Chr7 15974001 15988000 0 0 Deletion 13999 LOC_Os07g28050 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr7 19022109 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3015-S Chr7 19022119 19022119 0 0 Insertion 4 INTERGENIC HOMO FN3015-S Chr7 22684001 22716000 0 0 Deletion 31999 LOC_Os07g37830 peptidyl-prolyl cis-trans isomerase CYP37, chloroplast precursor, putative, expressed FN3015-S Chr7 22684001 22716000 0 0 Deletion 31999 LOC_Os07g37840 lipase, putative, expressed FN3015-S Chr7 22684001 22716000 0 0 Deletion 31999 LOC_Os07g37850 expressed protein FN3015-S Chr7 22684001 22716000 0 0 Deletion 31999 LOC_Os07g37860 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr7 22684001 22716000 0 0 Deletion 31999 LOC_Os07g37870 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr7 24039001 24057000 0 0 Deletion 17999 LOC_Os07g40060 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr7 24039001 24057000 0 0 Deletion 17999 LOC_Os07g40070 expressed protein FN3015-S Chr7 24039001 24057000 0 0 Deletion 17999 LOC_Os07g40080 ZOS7-09 - C2H2 zinc finger protein, expressed FN3015-S Chr7 24039001 24057000 0 0 Deletion 17999 LOC_Os07g42430 expressed protein FN3015-S Chr7 26557974 27379636 0 0 Inversion 821662 LOC_Os07g44460 peroxidase precursor, putative, expressed FN3015-S Chr7 26561030 27396118 0 0 Inversion 835088 FN3015-S Chr7 26885001 26911000 0 0 Deletion 25999 LOC_Os07g45064 Phosphatidylinositol kinase and FAT containing domain protein, putative, expressed FN3015-S Chr7 26885001 26911000 0 0 Deletion 25999 LOC_Os07g45070 FAT domain-containing protein, putative, expressed FN3015-S Chr7 26885001 26911000 0 0 Deletion 25999 LOC_Os07g45074 FAT domain-containing protein, putative, expressed FN3015-S Chr7 26934533 C-T 0 0 Single Base Substitution 0 START_GAINED HET FN3015-S Chr7 27222436 27222438 0 0 Deletion 2 intron_variant HET FN3015-S Chr7 27290520 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3015-S Chr7 27604320 27604320 0 0 Insertion 3 disruptive_inframe_insertion HET LOC_Os07g46260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr7 29088545 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3015-S Chr7 4625865 4625865 0 0 Insertion 125 upstream_gene_variant HET FN3015-S Chr7 7623001 7643000 0 0 Deletion 19999 LOC_Os07g13280 RNA recognition motif containing protein, putative, expressed FN3015-S Chr7 7623001 7643000 0 0 Deletion 19999 LOC_Os07g13310 RALFL10 - Rapid ALkalinization Factor RALF family protein precursor, putative, expressed FN3015-S Chr7 7623001 7643000 0 0 Deletion 19999 LOC_Os07g13319 hypothetical protein FN3015-S Chr7 8591001 8620000 0 0 Deletion 28999 LOC_Os07g14980 retrotransposon protein, putative, unclassified FN3015-S Chr7 8591001 8620000 0 0 Deletion 28999 LOC_Os07g14990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr7 8591001 8620000 0 0 Deletion 28999 LOC_Os07g15000 expressed protein FN3015-S Chr7 8591001 8620000 0 0 Deletion 28999 LOC_Os07g15010 hypothetical protein FN3015-S Chr7 8591001 8620000 0 0 Deletion 28999 LOC_Os07g15020 expressed protein FN3015-S Chr7 8591001 8620000 0 0 Deletion 28999 LOC_Os07g15030 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr8 10444001 10458000 0 0 Deletion 13999 LOC_Os08g17070 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr8 10444001 10458000 0 0 Deletion 13999 LOC_Os08g17080 PPR repeat domain containing protein, putative, expressed FN3015-S Chr8 10978001 10997000 0 0 Deletion 18999 LOC_Os08g17900 retrotransposon protein, putative, Ty3-gypsy subclass FN3015-S Chr8 10978001 10997000 0 0 Deletion 18999 LOC_Os08g17910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr8 10978001 10997000 0 0 Deletion 18999 LOC_Os08g17920 retrotransposon, putative, centromere-specific FN3015-S Chr8 10978001 10997000 0 0 Deletion 18999 LOC_Os08g19440 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr8 18658001 18670000 0 0 Deletion 11999 LOC_Os08g30320 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr8 18658001 18670000 0 0 Deletion 11999 LOC_Os08g30330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr8 18658001 18670000 0 0 Deletion 11999 LOC_Os08g30420 hypothetical protein FN3015-S Chr8 18845001 18862000 0 0 Deletion 16999 LOC_Os08g30590 C1-like domain containing protein, expressed FN3015-S Chr8 18845001 18862000 0 0 Deletion 16999 LOC_Os08g30600 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr8 2899829 2899830 0 0 Deletion 1 downstream_gene_variant HET FN3015-S Chr8 3731944 3731945 0 0 Deletion 1 upstream_gene_variant HET FN3015-S Chr8 5894001 5907000 0 0 Deletion 12999 LOC_Os08g10160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr8 5894001 5907000 0 0 Deletion 12999 LOC_Os08g10180 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr8 8050001 8071000 0 0 Deletion 20999 LOC_Os08g13550 retrotransposon protein, putative, Ty3-gypsy subclass FN3015-S Chr8 8050001 8071000 0 0 Deletion 20999 LOC_Os08g13560 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr8 8050001 8071000 0 0 Deletion 20999 LOC_Os08g13570 exo70 exocyst complex subunit family protein, putative, expressed FN3015-S Chr8 8050001 8071000 0 0 Deletion 20999 LOC_Os08g13580 transposon protein, putative, unclassified, expressed FN3015-S Chr8 8050001 8071000 0 0 Deletion 20999 LOC_Os08g14840 expressed protein FN3015-S Chr9 11022001 11058000 0 0 Deletion 35999 LOC_Os09g18010 expressed protein FN3015-S Chr9 11022001 11058000 0 0 Deletion 35999 LOC_Os09g18020 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN3015-S Chr9 11285001 11295000 0 0 Deletion 9999 LOC_Os09g18400 expressed protein FN3015-S Chr9 11285001 11295000 0 0 Deletion 9999 LOC_Os09g18490 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr9 16594251 16594253 0 0 Deletion 2 INTERGENIC HOMO FN3015-S Chr9 16681237 16681259 0 0 Deletion 22 frameshift_variant HET LOC_Os09g27460 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr9 20925001 20935000 0 0 Deletion 9999 LOC_Os09g37230 protein kinase family protein, putative, expressed FN3015-S Chr9 21477611 21477611 0 0 Insertion 4 upstream_gene_variant HET FN3015-S Chr9 2173001 2180000 0 0 Deletion 6999 FN3015-S Chr9 22450001 22500000 0 0 Deletion 49999 LOC_Os09g39110 vignain precursor, putative, expressed FN3015-S Chr9 22450001 22500000 0 0 Deletion 49999 LOC_Os09g39120 thiol protease SEN102 precursor, putative, expressed FN3015-S Chr9 22450001 22500000 0 0 Deletion 49999 LOC_Os09g39130 expressed protein FN3015-S Chr9 22450001 22500000 0 0 Deletion 49999 LOC_Os09g39140 vignain precursor, putative, expressed FN3015-S Chr9 22450001 22500000 0 0 Deletion 49999 LOC_Os09g39150 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3015-S Chr9 22450001 22500000 0 0 Deletion 49999 LOC_Os09g39160 thiol protease SEN102 precursor, putative, expressed FN3015-S Chr9 22450001 22500000 0 0 Deletion 49999 LOC_Os09g39170 cysteine proteinase COT44 precursor, putative, expressed FN3015-S Chr9 324874 324875 0 0 Deletion 1 upstream_gene_variant HET FN3015-S Chr9 5061428 5061516 0 0 Deletion 88 intron_variant HET FN3015-S Chr9 5479001 5493000 0 0 Deletion 13999 LOC_Os09g10080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr9 5479001 5493000 0 0 Deletion 13999 LOC_Os09g10820 oxidoreductase domain protein, putative, expressed FN3015-S Chr9 6812314 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3015-S Chr9 7156001 7173000 0 0 Deletion 16999 LOC_Os09g12510 expressed protein FN3015-S Chr9 7156001 7173000 0 0 Deletion 16999 LOC_Os09g13770 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr9 8737001 8758000 0 0 Deletion 20999 LOC_Os09g14720 retrotransposon protein, putative, unclassified, expressed FN3015-S Chr9 8737001 8758000 0 0 Deletion 20999 LOC_Os09g14730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3015-S Chr9 8737001 8758000 0 0 Deletion 20999 LOC_Os09g14740 retrotransposon protein, putative, unclassified, expressed