FN3016-S Chr1 11139562 11139582 0 0 Deletion 20 upstream_gene_variant HET FN3016-S Chr1 11292339 11292340 0 0 Deletion 1 downstream_gene_variant HET FN3016-S Chr1 14579001 14616000 0 0 Deletion 36999 LOC_Os01g25710 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3016-S Chr1 14579001 14616000 0 0 Deletion 36999 LOC_Os01g25720 disease resistance protein RGA4, putative, expressed FN3016-S Chr1 14579001 14616000 0 0 Deletion 36999 LOC_Os01g25730 retrotransposon protein, putative, unclassified FN3016-S Chr1 14579001 14616000 0 0 Deletion 36999 LOC_Os01g25740 powdery mildew resistance protein PM3F, putative, expressed FN3016-S Chr1 14579001 14616000 0 0 Deletion 36999 LOC_Os01g25760 powdery mildew resistance protein PM3F, putative, expressed FN3016-S Chr1 14579001 14616000 0 0 Deletion 36999 LOC_Os01g25770 expressed protein FN3016-S Chr1 14579001 14616000 0 0 Deletion 36999 LOC_Os01g25780 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr1 14579001 14616000 0 0 Deletion 36999 LOC_Os01g25800 expressed protein FN3016-S Chr1 14579001 14616000 0 0 Deletion 36999 LOC_Os01g25810 powdery mildew resistance protein PM3A, putative, expressed FN3016-S Chr1 14579001 14616000 0 0 Deletion 36999 LOC_Os01g27440 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr1 17364001 17423000 0 0 Deletion 58999 LOC_Os01g31740 retrotransposon protein, putative, unclassified FN3016-S Chr1 17364001 17423000 0 0 Deletion 58999 LOC_Os01g31750 transposon protein, putative, unclassified, expressed FN3016-S Chr1 17364001 17423000 0 0 Deletion 58999 LOC_Os01g31760 acyl-ACP thioesterase, putative, expressed FN3016-S Chr1 17364001 17423000 0 0 Deletion 58999 LOC_Os01g31770 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed FN3016-S Chr1 17364001 17423000 0 0 Deletion 58999 LOC_Os01g31780 expressed protein FN3016-S Chr1 17364001 17423000 0 0 Deletion 58999 LOC_Os01g31790 transposon protein, putative, unclassified FN3016-S Chr1 17364001 17423000 0 0 Deletion 58999 LOC_Os01g31800 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed FN3016-S Chr1 17364001 17423000 0 0 Deletion 58999 LOC_Os01g31810 RNA recognition motif containing protein, putative, expressed FN3016-S Chr1 17364001 17423000 0 0 Deletion 58999 LOC_Os01g32044 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr1 20009369 20009439 0 0 Deletion 70 downstream_gene_variant HET FN3016-S Chr1 23862783 23862783 0 0 Insertion 76 upstream_gene_variant HET FN3016-S Chr1 27072046 27072046 0 0 Insertion 1 downstream_gene_variant HET FN3016-S Chr1 29483372 A-G 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3016-S Chr1 3052807 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3016-S Chr1 33607890 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3016-S Chr1 34874780 C-T 0 0 Single Base Substitution 0 INTRON HET FN3016-S Chr1 35281004 35281005 0 0 Deletion 1 downstream_gene_variant HET FN3016-S Chr1 36755001 36775000 0 0 Deletion 19999 LOC_Os01g63460 MYB family transcription factor, putative, expressed FN3016-S Chr1 36755001 36775000 0 0 Deletion 19999 LOC_Os01g63470 C2 domain containing protein, expressed FN3016-S Chr1 36755001 36775000 0 0 Deletion 19999 LOC_Os01g63940 Transcription initiation factor TFIID subunit A containing protein, expressed FN3016-S Chr1 39719562 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3016-S Chr1 40746184 40746195 0 0 Deletion 11 INTRON HOMO FN3016-S Chr1 40963001 40976000 0 0 Deletion 12999 LOC_Os01g70780 WD40-like domain containing protein, putative, expressed FN3016-S Chr1 40963001 40976000 0 0 Deletion 12999 LOC_Os01g70790 SRC2 protein, putative, expressed FN3016-S Chr1 40963001 40976000 0 0 Deletion 12999 LOC_Os01g70940 potassium transporter, putative, expressed FN3016-S Chr1 7861415 7861419 0 0 Deletion 4 upstream_gene_variant HET FN3016-S Chr1 8273031 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3016-S Chr1 8715233 8715234 0 0 Deletion 1 upstream_gene_variant HET FN3016-S Chr1 9569713 9569726 0 0 Deletion 13 INTERGENIC HOMO FN3016-S Chr10 10205178 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3016-S Chr10 12103240 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g23190 transposon protein, putative, unclassified, expressed FN3016-S Chr10 12103241 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3016-S Chr10 17100566 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3016-S Chr10 17859632 T-G 0 0 Single Base Substitution 0 INTRON HET FN3016-S Chr10 18446001 18512000 0 0 Deletion 65999 LOC_Os10g34614 csAtPR5, putative, expressed FN3016-S Chr10 18446001 18512000 0 0 Deletion 65999 LOC_Os10g34630 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr10 18446001 18512000 0 0 Deletion 65999 LOC_Os10g34640 retrotransposon protein, putative, unclassified FN3016-S Chr10 18446001 18512000 0 0 Deletion 65999 LOC_Os10g34650 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr10 18446001 18512000 0 0 Deletion 65999 LOC_Os10g34660 expressed protein FN3016-S Chr10 18446001 18512000 0 0 Deletion 65999 LOC_Os10g34670 prefoldin, putative, expressed FN3016-S Chr10 18446001 18512000 0 0 Deletion 65999 LOC_Os10g34680 vacuolar protein sorting-associated protein 52, putative, expressed FN3016-S Chr10 18446001 18512000 0 0 Deletion 65999 LOC_Os10g34694 hypothetical protein FN3016-S Chr10 18446001 18512000 0 0 Deletion 65999 LOC_Os10g34700 expressed protein FN3016-S Chr10 4674001 4741000 0 0 Deletion 66999 LOC_Os10g08610 expressed protein FN3016-S Chr10 4674001 4741000 0 0 Deletion 66999 LOC_Os10g08620 chalcone and stilbene synthases, putative, expressed FN3016-S Chr10 4674001 4741000 0 0 Deletion 66999 LOC_Os10g08630 expressed protein FN3016-S Chr10 4674001 4741000 0 0 Deletion 66999 LOC_Os10g08640 expressed protein FN3016-S Chr10 4674001 4741000 0 0 Deletion 66999 LOC_Os10g08650 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3016-S Chr10 4674001 4741000 0 0 Deletion 66999 LOC_Os10g08660 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3016-S Chr10 4674001 4741000 0 0 Deletion 66999 LOC_Os10g08670 chalcone synthase, putative, expressed FN3016-S Chr10 4674001 4741000 0 0 Deletion 66999 LOC_Os10g08680 conserved hypothetical protein FN3016-S Chr10 4674001 4741000 0 0 Deletion 66999 LOC_Os10g08690 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr10 4674001 4741000 0 0 Deletion 66999 LOC_Os10g08696 retrotransposon protein, putative, Ty3-gypsy subclass FN3016-S Chr10 4674001 4741000 0 0 Deletion 66999 LOC_Os10g08702 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3016-S Chr10 4674001 4741000 0 0 Deletion 66999 LOC_Os10g08710 chalcone synthase, putative, expressed FN3016-S Chr10 4674001 4741000 0 0 Deletion 66999 LOC_Os10g08720 hypothetical protein FN3016-S Chr10 4674001 4741000 0 0 Deletion 66999 LOC_Os10g08730 expressed protein FN3016-S Chr10 4674001 4741000 0 0 Deletion 66999 LOC_Os10g08740 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3016-S Chr10 5103788 5103788 0 0 Insertion 2 upstream_gene_variant HET FN3016-S Chr10 5186976 5186977 0 0 Deletion 1 upstream_gene_variant HET FN3016-S Chr10 5728291 5728370 0 0 Deletion 79 upstream_gene_variant HET FN3016-S Chr10 6290001 6312000 0 0 Deletion 21999 LOC_Os10g11354 MATE efflux family protein, putative, expressed FN3016-S Chr10 6290001 6312000 0 0 Deletion 21999 LOC_Os10g11370 LTPL87 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed FN3016-S Chr10 6290001 6312000 0 0 Deletion 21999 LOC_Os10g11384 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3016-S Chr10 6439364 6439366 0 0 Deletion 2 frameshift_variant HET LOC_Os10g11666 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3016-S Chr10 9032001 9136000 0 0 Deletion 103999 LOC_Os10g17870 retrotransposon protein, putative, Ty3-gypsy subclass FN3016-S Chr10 9032001 9136000 0 0 Deletion 103999 LOC_Os10g17880 expressed protein FN3016-S Chr10 9032001 9136000 0 0 Deletion 103999 LOC_Os10g17890 OsWAK113 - OsWAK receptor-like protein OsWAK-RLP, expressed FN3016-S Chr10 9032001 9136000 0 0 Deletion 103999 LOC_Os10g17900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3016-S Chr10 9032001 9136000 0 0 Deletion 103999 LOC_Os10g17910 OsWAK114 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed FN3016-S Chr10 9032001 9136000 0 0 Deletion 103999 LOC_Os10g17920 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr10 9032001 9136000 0 0 Deletion 103999 LOC_Os10g17930 OsFBX381 - F-box domain containing protein, expressed FN3016-S Chr10 9032001 9136000 0 0 Deletion 103999 LOC_Os10g17940 OsFBX382 - F-box domain containing protein, expressed FN3016-S Chr10 9032001 9136000 0 0 Deletion 103999 LOC_Os10g17950 TKL_IRAK_DUF26-lc.5 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3016-S Chr10 9032001 9136000 0 0 Deletion 103999 LOC_Os10g17960 TKL_IRAK_DUF26-lc.26 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3016-S Chr10 9032001 9136000 0 0 Deletion 103999 LOC_Os10g17970 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3016-S Chr10 9032001 9136000 0 0 Deletion 103999 LOC_Os10g17980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3016-S Chr10 9032001 9136000 0 0 Deletion 103999 LOC_Os10g17990 phosphatidate cytidylyltransferase, putative, expressed FN3016-S Chr10 9032001 9136000 0 0 Deletion 103999 LOC_Os10g18330 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3016-S Chr10 9318001 9344000 0 0 Deletion 25999 LOC_Os10g18360 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr10 9318001 9344000 0 0 Deletion 25999 LOC_Os10g18364 ZOS10-03 - C2H2 zinc finger protein, expressed FN3016-S Chr10 9318001 9344000 0 0 Deletion 25999 LOC_Os10g18370 transcriptional regulator, putative, expressed FN3016-S Chr10 9318001 9344000 0 0 Deletion 25999 LOC_Os10g18380 expressed protein FN3016-S Chr10 9318001 9344000 0 0 Deletion 25999 LOC_Os10g18630 retrotransposon protein, putative, Ty3-gypsy subclass FN3016-S Chr11 11477660 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3016-S Chr11 11900466 Chr9 13703324 0 Translocation 0 FN3016-S Chr11 14219770 14219859 0 0 Deletion 89 upstream_gene_variant HET FN3016-S Chr11 14848107 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3016-S Chr11 14848109 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3016-S Chr11 19295064 19295064 0 0 Insertion 2 upstream_gene_variant HET FN3016-S Chr11 2096907 2096915 0 0 Deletion 8 INTERGENIC HET FN3016-S Chr11 22388532 22388532 0 0 Insertion 30 downstream_gene_variant HET FN3016-S Chr11 24234501 24234501 0 0 Insertion 8 downstream_gene_variant HET FN3016-S Chr11 24660001 24699000 0 0 Deletion 38999 LOC_Os11g41170 disease resistance protein RPM1, putative, expressed FN3016-S Chr11 24660001 24699000 0 0 Deletion 38999 LOC_Os11g41180 expressed protein FN3016-S Chr11 24660001 24699000 0 0 Deletion 38999 LOC_Os11g41190 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr11 26668329 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3016-S Chr11 27012178 27012181 0 0 Deletion 3 inframe_deletion HET LOC_Os11g44670 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3016-S Chr11 28982147 28982152 0 0 Deletion 5 INTERGENIC HOMO FN3016-S Chr11 3595695 3595705 0 0 Deletion 10 INTERGENIC HOMO FN3016-S Chr11 5620482 5620482 0 0 Insertion 5 upstream_gene_variant HET FN3016-S Chr11 9058168 C-T 0 0 Single Base Substitution 0 INTRON HET FN3016-S Chr11 9869571 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3016-S Chr12 11626172 11626172 0 0 Insertion 7 downstream_gene_variant HET FN3016-S Chr12 13381592 13381609 0 0 Deletion 17 downstream_gene_variant HET FN3016-S Chr12 14098357 14098359 0 0 Deletion 2 intron_variant HET FN3016-S Chr12 14141001 14157000 0 0 Deletion 15999 LOC_Os12g24700 retrotransposon protein, putative, Ty1-copia subclass FN3016-S Chr12 14141001 14157000 0 0 Deletion 15999 LOC_Os12g25070 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr12 14971531 14971531 0 0 Insertion 1 upstream_gene_variant HET FN3016-S Chr12 15034563 15034576 0 0 Deletion 13 INTERGENIC HET FN3016-S Chr12 15857001 15893000 0 0 Deletion 35999 LOC_Os12g27090 expressed protein FN3016-S Chr12 15857001 15893000 0 0 Deletion 35999 LOC_Os12g27096 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3016-S Chr12 15922813 15922813 0 0 Insertion 2 downstream_gene_variant HET FN3016-S Chr12 15945706 A-C 0 0 Single Base Substitution 0 INTRON HET FN3016-S Chr12 16182376 Chr4 32905476 0 Translocation 0 LOC_Os04g55320 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3016-S Chr12 16182376 Chr4 32905476 0 Translocation 0 LOC_Os12g27490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3016-S Chr12 18061808 18061817 0 0 Deletion 9 INTERGENIC HET FN3016-S Chr12 18162001 18186000 0 0 Deletion 23999 LOC_Os12g30270 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr12 18162001 18186000 0 0 Deletion 23999 LOC_Os12g30280 retrotransposon protein, putative, unclassified FN3016-S Chr12 18162001 18186000 0 0 Deletion 23999 LOC_Os12g30290 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr12 18162001 18186000 0 0 Deletion 23999 LOC_Os12g30310 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3016-S Chr12 18258001 18282000 0 0 Deletion 23999 LOC_Os12g30444 hypothetical protein FN3016-S Chr12 18258001 18282000 0 0 Deletion 23999 LOC_Os12g30450 expressed protein FN3016-S Chr12 18258001 18282000 0 0 Deletion 23999 LOC_Os12g32050 expressed protein FN3016-S Chr12 21379526 21379526 0 0 Insertion 1 upstream_gene_variant HET FN3016-S Chr12 23655379 23655400 0 0 Deletion 21 downstream_gene_variant HET FN3016-S Chr12 4350777 4350800 0 0 Deletion 23 upstream_gene_variant HET FN3016-S Chr12 6926849 6926849 0 0 Insertion 57 intergenic_region HET FN3016-S Chr2 15038001 15067000 0 0 Deletion 28999 LOC_Os02g25700 O-acyltransferase, putative, expressed FN3016-S Chr2 15038001 15067000 0 0 Deletion 28999 LOC_Os02g25710 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr2 15038001 15067000 0 0 Deletion 28999 LOC_Os02g25720 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3016-S Chr2 15038001 15067000 0 0 Deletion 28999 LOC_Os02g25730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3016-S Chr2 15933001 15961000 0 0 Deletion 27999 LOC_Os02g27120 retrotransposon protein, putative, LINE subclass, expressed FN3016-S Chr2 15933001 15961000 0 0 Deletion 27999 LOC_Os02g27130 expressed protein FN3016-S Chr2 15933001 15961000 0 0 Deletion 27999 LOC_Os02g27240 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr2 18989821 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3016-S Chr2 20414001 20437000 0 0 Deletion 22999 LOC_Os02g34140 expressed protein FN3016-S Chr2 20414001 20437000 0 0 Deletion 22999 LOC_Os02g34150 hypothetical protein FN3016-S Chr2 20414001 20437000 0 0 Deletion 22999 LOC_Os02g34160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3016-S Chr2 20414001 20437000 0 0 Deletion 22999 LOC_Os02g34310 expressed protein FN3016-S Chr2 22606001 22690000 0 0 Deletion 83999 LOC_Os02g37450 expressed protein FN3016-S Chr2 22606001 22690000 0 0 Deletion 83999 LOC_Os02g37460 retrotransposon protein, putative, Ty3-gypsy subclass FN3016-S Chr2 22606001 22690000 0 0 Deletion 83999 LOC_Os02g37470 tetratricopeptide repeat containing protein, putative, expressed FN3016-S Chr2 22606001 22690000 0 0 Deletion 83999 LOC_Os02g37480 glycine-rich cell wall structural protein precursor, putative, expressed FN3016-S Chr2 22606001 22690000 0 0 Deletion 83999 LOC_Os02g37490 glycine-rich cell wall structural protein precursor, putative, expressed FN3016-S Chr2 22606001 22690000 0 0 Deletion 83999 LOC_Os02g37500 expressed protein FN3016-S Chr2 22606001 22690000 0 0 Deletion 83999 LOC_Os02g37510 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr2 22606001 22690000 0 0 Deletion 83999 LOC_Os02g37520 RNA-binding protein FUS, putative, expressed FN3016-S Chr2 22606001 22690000 0 0 Deletion 83999 LOC_Os02g37530 conserved hypothetical protein FN3016-S Chr2 22606001 22690000 0 0 Deletion 83999 LOC_Os02g37540 expressed protein FN3016-S Chr2 22606001 22690000 0 0 Deletion 83999 LOC_Os02g37550 expressed protein FN3016-S Chr2 22606001 22690000 0 0 Deletion 83999 LOC_Os02g37560 transposon protein, putative, unclassified, expressed FN3016-S Chr2 22606001 22690000 0 0 Deletion 83999 LOC_Os02g37570 keratin-associated protein 5-3, putative, expressed FN3016-S Chr2 22606001 22690000 0 0 Deletion 83999 LOC_Os02g37580 fimbrin-like protein 2, putative, expressed FN3016-S Chr2 22606001 22690000 0 0 Deletion 83999 LOC_Os02g37590 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed FN3016-S Chr2 22606001 22690000 0 0 Deletion 83999 LOC_Os02g37730 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3016-S Chr2 22781194 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3016-S Chr2 241487 241488 0 0 Deletion 1 upstream_gene_variant HET FN3016-S Chr2 27885001 27910000 0 0 Deletion 24999 LOC_Os02g45780 zinc finger, C3HC4 type domain containing protein, expressed FN3016-S Chr2 27885001 27910000 0 0 Deletion 24999 LOC_Os02g45790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3016-S Chr2 27885001 27910000 0 0 Deletion 24999 LOC_Os02g45800 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr2 27885001 27910000 0 0 Deletion 24999 LOC_Os02g45810 WD domain, G-beta repeat domain containing protein, expressed FN3016-S Chr2 27885001 27910000 0 0 Deletion 24999 LOC_Os02g45820 mitochondrial import inner membrane translocase subunit Tim, putative, expressed FN3016-S Chr2 27891472 27891472 0 0 Insertion 20 upstream_gene_variant HET FN3016-S Chr2 29698373 29698376 0 0 Deletion 3 upstream_gene_variant HET FN3016-S Chr2 32764606 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g53550 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr2 5330255 5330255 0 0 Insertion 1 upstream_gene_variant HET FN3016-S Chr2 85012 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3016-S Chr2 9034220 9034220 0 0 Insertion 33 intergenic_region HET FN3016-S Chr3 12496347 12496348 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os03g21850 nucleotidyltransferase, putative, expressed FN3016-S Chr3 16769218 16769219 0 0 Deletion 1 upstream_gene_variant HET FN3016-S Chr3 18039001 18082000 0 0 Deletion 42999 LOC_Os03g31620 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3016-S Chr3 18039001 18082000 0 0 Deletion 42999 LOC_Os03g31630 OsSub29 - Putative Subtilisin homologue, expressed FN3016-S Chr3 18039001 18082000 0 0 Deletion 42999 LOC_Os03g31634 expressed protein FN3016-S Chr3 18039001 18082000 0 0 Deletion 42999 LOC_Os03g31640 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr3 18039001 18082000 0 0 Deletion 42999 LOC_Os03g31650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3016-S Chr3 18039001 18082000 0 0 Deletion 42999 LOC_Os03g31660 transposon protein, putative, unclassified, expressed FN3016-S Chr3 18039001 18082000 0 0 Deletion 42999 LOC_Os03g31670 hypothetical protein FN3016-S Chr3 22725001 22753000 0 0 Deletion 27999 LOC_Os03g40880 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr3 22725001 22753000 0 0 Deletion 27999 LOC_Os03g40900 expressed protein FN3016-S Chr3 22725001 22753000 0 0 Deletion 27999 LOC_Os03g40910 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr3 22725001 22753000 0 0 Deletion 27999 LOC_Os03g40920 expressed protein FN3016-S Chr3 22725001 22753000 0 0 Deletion 27999 LOC_Os03g40930 expressed protein FN3016-S Chr3 27913001 27926000 0 0 Deletion 12999 LOC_Os03g49010 expressed protein FN3016-S Chr3 27913001 27926000 0 0 Deletion 12999 LOC_Os03g49020 hypothetical protein FN3016-S Chr3 27913001 27926000 0 0 Deletion 12999 LOC_Os03g49230 acetyltransferase, GNAT family, putative, expressed FN3016-S Chr3 2901155 Chr1 39715916 0 Translocation 0 FN3016-S Chr3 29255001 29271000 0 0 Deletion 15999 LOC_Os03g51550 WD repeat-containing protein 5, putative, expressed FN3016-S Chr3 30126001 30175000 0 0 Deletion 48999 LOC_Os03g52510 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr3 30126001 30175000 0 0 Deletion 48999 LOC_Os03g52520 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr3 30126001 30175000 0 0 Deletion 48999 LOC_Os03g52530 retrotransposon protein, putative, Ty3-gypsy subclass FN3016-S Chr3 30126001 30175000 0 0 Deletion 48999 LOC_Os03g52540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3016-S Chr3 30126001 30175000 0 0 Deletion 48999 LOC_Os03g52550 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr3 30126001 30175000 0 0 Deletion 48999 LOC_Os03g52560 glycosyl hydrolases, putative, expressed FN3016-S Chr3 30126001 30175000 0 0 Deletion 48999 LOC_Os03g52570 glycerol-3-phosphate acyltransferase, putative, expressed FN3016-S Chr3 30126001 30175000 0 0 Deletion 48999 LOC_Os03g52594 CCR4-NOT transcription factor, putative, expressed FN3016-S Chr3 32215001 32231000 0 0 Deletion 15999 LOC_Os03g56560 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr3 32215001 32231000 0 0 Deletion 15999 LOC_Os03g56566 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr3 32215001 32231000 0 0 Deletion 15999 LOC_Os03g56572 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3016-S Chr3 32400359 32400361 0 0 Deletion 2 3_prime_UTR_variant HET FN3016-S Chr3 34137633 34137703 0 0 Deletion 70 downstream_gene_variant HET FN3016-S Chr3 9316533 9316533 0 0 Insertion 2 UTR_5_PRIME HET FN3016-S Chr4 10589001 10611000 0 0 Deletion 21999 LOC_Os04g19090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3016-S Chr4 10589001 10611000 0 0 Deletion 21999 LOC_Os04g19100 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr4 10589001 10611000 0 0 Deletion 21999 LOC_Os04g19160 hypothetical protein FN3016-S Chr4 13541927 13541929 0 0 Deletion 2 upstream_gene_variant HET FN3016-S Chr4 15177145 15177145 0 0 Insertion 1 intergenic_region HET FN3016-S Chr4 28252597 28252597 0 0 Insertion 4 upstream_gene_variant HET FN3016-S Chr4 3177612 3177613 0 0 Deletion 1 upstream_gene_variant HET FN3016-S Chr4 31790001 31807000 0 0 Deletion 16999 LOC_Os04g53390 MrBTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH-related domain, expressed FN3016-S Chr4 31790001 31807000 0 0 Deletion 16999 LOC_Os04g54120 serine/threonine-protein kinase receptor precursor, putative, expressed FN3016-S Chr4 33158001 33174000 0 0 Deletion 15999 LOC_Os04g55720 D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed FN3016-S Chr4 33158001 33174000 0 0 Deletion 15999 LOC_Os04g55730 alpha-N-acetylglucosaminidase, putative, expressed FN3016-S Chr4 33158001 33174000 0 0 Deletion 15999 LOC_Os04g56995 expressed protein FN3016-S Chr4 35074674 35074677 0 0 Deletion 3 UTR_5_PRIME HOMO FN3016-S Chr4 5365826 5365827 0 0 Deletion 1 upstream_gene_variant HET FN3016-S Chr4 6670465 6670465 0 0 Insertion 15 upstream_gene_variant HET FN3016-S Chr4 7538302 7538313 0 0 Deletion 11 upstream_gene_variant HET FN3016-S Chr4 8767001 8810000 0 0 Deletion 42999 LOC_Os04g16150 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr4 8767001 8810000 0 0 Deletion 42999 LOC_Os04g16160 expressed protein FN3016-S Chr4 8767001 8810000 0 0 Deletion 42999 LOC_Os04g16170 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr4 8767001 8810000 0 0 Deletion 42999 LOC_Os04g16180 retrotransposon protein, putative, unclassified FN3016-S Chr4 8767001 8810000 0 0 Deletion 42999 LOC_Os04g16190 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr4 8767001 8810000 0 0 Deletion 42999 LOC_Os04g16200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3016-S Chr4 8767001 8810000 0 0 Deletion 42999 LOC_Os04g16220 retrotransposon protein, putative, Ty3-gypsy subclass FN3016-S Chr5 11911001 12012000 0 0 Deletion 100999 LOC_Os05g20330 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr5 11911001 12012000 0 0 Deletion 100999 LOC_Os05g20340 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr5 11911001 12012000 0 0 Deletion 100999 LOC_Os05g20350 expressed protein FN3016-S Chr5 11911001 12012000 0 0 Deletion 100999 LOC_Os05g20360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3016-S Chr5 11911001 12012000 0 0 Deletion 100999 LOC_Os05g20370 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr5 11911001 12012000 0 0 Deletion 100999 LOC_Os05g20380 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr5 11911001 12012000 0 0 Deletion 100999 LOC_Os05g20390 transposon protein, putative, unclassified, expressed FN3016-S Chr5 11911001 12012000 0 0 Deletion 100999 LOC_Os05g20400 transposon protein, putative, unclassified, expressed FN3016-S Chr5 11911001 12012000 0 0 Deletion 100999 LOC_Os05g20410 retrotransposon protein, putative, Ty3-gypsy subclass FN3016-S Chr5 11911001 12012000 0 0 Deletion 100999 LOC_Os05g20420 expressed protein FN3016-S Chr5 11911001 12012000 0 0 Deletion 100999 LOC_Os05g20430 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr5 11911001 12012000 0 0 Deletion 100999 LOC_Os05g20440 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr5 11911001 12012000 0 0 Deletion 100999 LOC_Os05g20450 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr5 11911001 12012000 0 0 Deletion 100999 LOC_Os05g20460 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr5 11911001 12012000 0 0 Deletion 100999 LOC_Os05g20770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3016-S Chr5 17883149 Chr3 31648204 0 Translocation 0 FN3016-S Chr5 20345564 20345564 0 0 Insertion 31 intron_variant HET FN3016-S Chr5 21995348 21995354 0 0 Deletion 6 disruptive_inframe_deletion HET LOC_Os05g37590 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr5 29951853 29951854 0 0 Deletion 1 intron_variant HET FN3016-S Chr5 7872001 7892000 0 0 Deletion 19999 LOC_Os05g14100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3016-S Chr5 7872001 7892000 0 0 Deletion 19999 LOC_Os05g14110 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr5 7872001 7892000 0 0 Deletion 19999 LOC_Os05g14120 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr5 7872001 7892000 0 0 Deletion 19999 LOC_Os05g14540 hypothetical protein FN3016-S Chr5 9187001 9240000 0 0 Deletion 52999 LOC_Os05g16260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3016-S Chr5 9187001 9240000 0 0 Deletion 52999 LOC_Os05g16270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3016-S Chr5 9187001 9240000 0 0 Deletion 52999 LOC_Os05g16280 transposon protein, putative, unclassified, expressed FN3016-S Chr5 9187001 9240000 0 0 Deletion 52999 LOC_Os05g16290 transposon protein, putative, unclassified, expressed FN3016-S Chr5 9187001 9240000 0 0 Deletion 52999 LOC_Os05g16300 expressed protein FN3016-S Chr5 9716001 9745000 0 0 Deletion 28999 LOC_Os05g17030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3016-S Chr5 9716001 9745000 0 0 Deletion 28999 LOC_Os05g17040 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr5 9716001 9745000 0 0 Deletion 28999 LOC_Os05g17050 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3016-S Chr5 9716001 9745000 0 0 Deletion 28999 LOC_Os05g17060 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr6 10408001 10433000 0 0 Deletion 24999 LOC_Os06g17930 NBS-LRR disease resistance protein, putative, expressed FN3016-S Chr6 10408001 10433000 0 0 Deletion 24999 LOC_Os06g20570 glycosyltransferase, putative, expressed FN3016-S Chr6 10750372 10750451 0 0 Deletion 79 downstream_gene_variant HET FN3016-S Chr6 1143128 1143128 0 0 Insertion 2 FRAME_SHIFT HET LOC_Os06g03090 expressed protein FN3016-S Chr6 11538872 11538872 0 0 Insertion 1 downstream_gene_variant HET FN3016-S Chr6 12168232 12168232 0 0 Insertion 2 upstream_gene_variant HET FN3016-S Chr6 14165269 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3016-S Chr6 14889001 14927000 0 0 Deletion 37999 LOC_Os06g25470 expressed protein FN3016-S Chr6 14889001 14927000 0 0 Deletion 37999 LOC_Os06g25500 expressed protein FN3016-S Chr6 14889001 14927000 0 0 Deletion 37999 LOC_Os06g25510 expressed protein FN3016-S Chr6 14889001 14927000 0 0 Deletion 37999 LOC_Os06g25520 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr6 14889001 14927000 0 0 Deletion 37999 LOC_Os06g25640 retrotransposon protein, putative, unclassified FN3016-S Chr6 16711962 G-A 0 0 Single Base Substitution 0 INTRON HET FN3016-S Chr6 20528740 20528740 0 0 Insertion 83 downstream_gene_variant HET FN3016-S Chr6 21389882 21389882 0 0 Insertion 1 upstream_gene_variant HET FN3016-S Chr6 6706942 6706942 0 0 Insertion 2 INTERGENIC HET FN3016-S Chr6 6948495 6948495 0 0 Insertion 1 upstream_gene_variant HET FN3016-S Chr7 11487908 11487908 0 0 Insertion 1 upstream_gene_variant HET FN3016-S Chr7 14384256 14384256 0 0 Insertion 43 upstream_gene_variant HET FN3016-S Chr7 14673001 14709000 0 0 Deletion 35999 LOC_Os07g25590 decarboxylase, putative, expressed FN3016-S Chr7 14673001 14709000 0 0 Deletion 35999 LOC_Os07g25600 expressed protein FN3016-S Chr7 14673001 14709000 0 0 Deletion 35999 LOC_Os07g25620 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr7 14673001 14709000 0 0 Deletion 35999 LOC_Os07g25630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3016-S Chr7 14673001 14709000 0 0 Deletion 35999 LOC_Os07g25640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3016-S Chr7 14673001 14709000 0 0 Deletion 35999 LOC_Os07g25650 expressed protein FN3016-S Chr7 14968784 14968793 0 0 Deletion 9 downstream_gene_variant HET FN3016-S Chr7 15404951 15404952 0 0 Deletion 1 upstream_gene_variant HET FN3016-S Chr7 1661566 1661567 0 0 Deletion 1 frameshift_variant HET LOC_Os07g03940 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3016-S Chr7 27408001 27428000 0 0 Deletion 19999 LOC_Os07g45940 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr7 27408001 27428000 0 0 Deletion 19999 LOC_Os07g45950 expressed protein FN3016-S Chr7 27408001 27428000 0 0 Deletion 19999 LOC_Os07g45960 expressed protein FN3016-S Chr7 27408001 27428000 0 0 Deletion 19999 LOC_Os07g46090 expressed protein FN3016-S Chr7 5925256 5925257 0 0 Deletion 1 upstream_gene_variant HET FN3016-S Chr7 5951456 C-G 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN3016-S Chr7 7529309 T-A 0 0 Single Base Substitution 0 INTRON HET FN3016-S Chr7 8214608 8214608 0 0 Insertion 1 downstream_gene_variant HET FN3016-S Chr7 8253283 8253285 0 0 Deletion 2 upstream_gene_variant HET FN3016-S Chr7 9666151 Chr4 14117289 0 Translocation 0 FN3016-S Chr8 10894001 10912000 0 0 Deletion 17999 LOC_Os08g17784 purple acid phosphatase, putative, expressed FN3016-S Chr8 10894001 10912000 0 0 Deletion 17999 LOC_Os08g17890 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3016-S Chr8 12324413 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3016-S Chr8 1412520 1412521 0 0 Deletion 1 downstream_gene_variant HET FN3016-S Chr8 15792001 15810000 0 0 Deletion 17999 LOC_Os08g25960 transposon protein, putative, unclassified, expressed FN3016-S Chr8 15792001 15810000 0 0 Deletion 17999 LOC_Os08g25970 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr8 15792001 15810000 0 0 Deletion 17999 LOC_Os08g25980 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr8 17708785 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3016-S Chr8 18648001 18673000 0 0 Deletion 24999 LOC_Os08g30310 transposon protein, putative, CACTA, En/Spm sub-class FN3016-S Chr8 18648001 18673000 0 0 Deletion 24999 LOC_Os08g30320 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3016-S Chr8 18648001 18673000 0 0 Deletion 24999 LOC_Os08g30330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3016-S Chr8 26450001 26481000 0 0 Deletion 30999 LOC_Os08g41890 microtubule associated protein, putative, expressed FN3016-S Chr8 26450001 26481000 0 0 Deletion 30999 LOC_Os08g41900 expressed protein FN3016-S Chr8 26450001 26481000 0 0 Deletion 30999 LOC_Os08g41910 Sua5/YciO/YrdC/YwlC family protein, putative, expressed FN3016-S Chr8 3835125 3835125 0 0 Insertion 17 upstream_gene_variant HET FN3016-S Chr8 4247361 4247362 0 0 Deletion 1 downstream_gene_variant HET FN3016-S Chr8 5036828 5036829 0 0 Deletion 1 upstream_gene_variant HET FN3016-S Chr9 12239664 12239664 0 0 Insertion 21 downstream_gene_variant HET FN3016-S Chr9 14230796 14230797 0 0 Deletion 1 upstream_gene_variant HET FN3016-S Chr9 14756658 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3016-S Chr9 19174450 19174505 0 0 Deletion 55 frameshift_variant HET LOC_Os09g32120 expressed protein FN3016-S Chr9 2243395 2243395 0 0 Insertion 1 frameshift_variant HET LOC_Os09g04240 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr9 22632554 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g39350 expressed protein FN3016-S Chr9 5365238 5365238 0 0 Insertion 1 upstream_gene_variant HET FN3016-S Chr9 5495450 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os09g10080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3016-S Chr9 5500404 5500445 0 0 Deletion 41 upstream_gene_variant HET FN3016-S Chr9 6646001 6740000 0 0 Deletion 93999 LOC_Os09g11860 ulp1 protease family, C-terminal catalytic domain containing protein, expressed FN3016-S Chr9 6646001 6740000 0 0 Deletion 93999 LOC_Os09g11870 transposon protein, putative, unclassified, expressed FN3016-S Chr9 6646001 6740000 0 0 Deletion 93999 LOC_Os09g11880 retrotransposon protein, putative, unclassified, expressed FN3016-S Chr9 6646001 6740000 0 0 Deletion 93999 LOC_Os09g11890 expressed protein FN3016-S Chr9 6646001 6740000 0 0 Deletion 93999 LOC_Os09g11900 expressed protein FN3016-S Chr9 6646001 6740000 0 0 Deletion 93999 LOC_Os09g11910 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3016-S Chr9 6646001 6740000 0 0 Deletion 93999 LOC_Os09g11920 transposon protein, putative, unclassified, expressed FN3016-S Chr9 6646001 6740000 0 0 Deletion 93999 LOC_Os09g11930 expressed protein FN3016-S Chr9 6646001 6740000 0 0 Deletion 93999 LOC_Os09g11940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3016-S Chr9 6646001 6740000 0 0 Deletion 93999 LOC_Os09g11950 retrotransposon protein, putative, unclassified, expressed