FN3019-S Chr1 11419626 T-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3019-S Chr1 12170686 12170686 0 0 Insertion 85 downstream_gene_variant HET FN3019-S Chr1 15607151 15607152 0 0 Deletion 1 upstream_gene_variant HET FN3019-S Chr1 17038374 C-T 0 0 Single Base Substitution 0 INTRON HET FN3019-S Chr1 30675 A-G 0 0 Single Base Substitution 0 INTRON HET FN3019-S Chr1 31015656 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3019-S Chr1 5971819 5971819 0 0 Insertion 1 INTRON HOMO FN3019-S Chr10 12219836 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3019-S Chr10 1246800 Chr5 6483335 0 Translocation 0 FN3019-S Chr10 1246805 Chr5 6482921 0 Translocation 0 FN3019-S Chr10 14212029 14212030 0 0 Deletion 1 intergenic_region HET FN3019-S Chr10 20905200 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3019-S Chr10 5096030 5096031 0 0 Deletion 1 upstream_gene_variant HET FN3019-S Chr10 5264583 5264583 0 0 Insertion 1 downstream_gene_variant HET FN3019-S Chr10 5945112 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3019-S Chr10 7128561 7128561 0 0 Insertion 1 upstream_gene_variant HET FN3019-S Chr10 7137671 7137672 0 0 Deletion 1 upstream_gene_variant HET FN3019-S Chr10 7158677 7158747 0 0 Deletion 70 upstream_gene_variant HET FN3019-S Chr10 7161757 7161757 0 0 Insertion 1 intron_variant HET FN3019-S Chr11 10209841 10209846 0 0 Deletion 5 upstream_gene_variant HET FN3019-S Chr11 10498141 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3019-S Chr11 14183016 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3019-S Chr11 14910758 14910758 0 0 Insertion 70 upstream_gene_variant HET FN3019-S Chr11 26622499 26622500 0 0 Deletion 1 upstream_gene_variant HET FN3019-S Chr11 28752670 Chr1 19235201 0 Translocation 0 FN3019-S Chr12 15837814 15837821 0 0 Deletion 7 FRAME_SHIFT HET LOC_Os12g27050 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3019-S Chr12 17716846 17716847 0 0 Deletion 1 upstream_gene_variant HET FN3019-S Chr12 24101610 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3019-S Chr12 25668534 Chr6 4479377 0 Translocation 0 FN3019-S Chr12 26316418 26316418 0 0 Insertion 2 INTERGENIC HET FN3019-S Chr12 26605451 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3019-S Chr12 3436145 G-T 0 0 Single Base Substitution 0 INTRON HET FN3019-S Chr2 14218656 14218664 0 0 Deletion 8 upstream_gene_variant HET FN3019-S Chr2 14746149 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3019-S Chr2 16288108 16396091 0 0 Inversion 107983 FN3019-S Chr2 1743552 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3019-S Chr2 1743553 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3019-S Chr2 27515718 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3019-S Chr2 9382573 9382573 0 0 Insertion 7 downstream_gene_variant HET FN3019-S Chr3 12992753 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g03810 DEF8 - Defensin and Defensin-like DEFL family, expressed FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g03820 adenylate kinase, putative, expressed FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g03830 EF hand family protein, putative, expressed FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g03840 expressed protein FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g03850 GATA zinc finger domain containing protein, expressed FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g03860 expressed protein FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g03870 DNA-binding bromodomain-containing protein, putative, expressed FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g03880 protein kinase, putative, expressed FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g03890 protein kinase family protein, putative, expressed FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g03900 NIN, putative, expressed FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g03910 catalase domain containing protein, expressed FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g03920 Ubiquitin family domain containing protein, expressed FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g03930 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g03949 electron carrier/ protein disulfide oxidoreductase, putative, expressed FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g03970 retrotransposon protein, putative, unclassified, expressed FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g03980 coiled-coil domain-containing protein 124, putative, expressed FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g03990 signal recognition particle 43 kDa protein, chloroplast precursor, putative, expressed FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g04000 AMP-binding domain containing protein, expressed FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g04010 hypothetical protein FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g04020 expansin precursor, putative, expressed FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g04030 HVA22, putative, expressed FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g04040 expressed protein FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g04050 protein kinase family protein, putative, expressed FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g04060 CHIT16 - Chitinase family protein precursor, expressed FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g04070 no apical meristem protein, putative, expressed FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g04080 expressed protein FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g04100 expressed protein FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g04110 lysM domain-containing GPI-anchored protein precursor, putative, expressed FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g04120 AMP-binding enzyme, putative, expressed FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g04130 AMP-binding domain containing protein, expressed FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g04140 serine acetyltransferase protein, putative, expressed FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g04150 transposon protein, putative, Mutator sub-class, expressed FN3019-S Chr3 1711001 1911000 0 0 Deletion 199999 LOC_Os03g04169 ATP phosphoribosyltransferase, putative, expressed FN3019-S Chr3 1920001 1939000 0 0 Deletion 18999 LOC_Os03g04195 expressed protein FN3019-S Chr3 1920001 1939000 0 0 Deletion 18999 LOC_Os03g04210 IQ calmodulin-binding motif family protein, putative, expressed FN3019-S Chr3 1920001 1939000 0 0 Deletion 18999 LOC_Os03g04220 glutathione S-transferase, putative, expressed FN3019-S Chr3 1920001 1939000 0 0 Deletion 18999 LOC_Os03g04300 ankyrin repeat domain containing protein, expressed FN3019-S Chr3 23865075 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3019-S Chr3 2428484 2428485 0 0 Deletion 1 frameshift_variant HET LOC_Os03g05010 retrotransposon protein, putative, unclassified, expressed FN3019-S Chr3 24504121 24504127 0 0 Deletion 6 INTERGENIC HOMO FN3019-S Chr3 28457224 28457224 0 0 Insertion 15 upstream_gene_variant HET FN3019-S Chr3 5069117 5069118 0 0 Deletion 1 upstream_gene_variant HET FN3019-S Chr3 9550822 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3019-S Chr4 16083647 16083649 0 0 Deletion 2 upstream_gene_variant HET FN3019-S Chr4 21904768 21904768 0 0 Insertion 2 INTERGENIC HET FN3019-S Chr4 23681804 23681804 0 0 Insertion 1 upstream_gene_variant HET FN3019-S Chr4 26561864 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3019-S Chr4 2880416 2880444 0 0 Deletion 28 INTERGENIC HOMO FN3019-S Chr4 29534569 29534578 0 0 Deletion 9 INTRON HOMO FN3019-S Chr4 6030575 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g11080 retrotransposon protein, putative, unclassified, expressed FN3019-S Chr4 6467183 6467183 0 0 Insertion 84 upstream_gene_variant HET FN3019-S Chr4 7803262 7803262 0 0 Insertion 1 downstream_gene_variant HET FN3019-S Chr4 9003268 9003269 0 0 Deletion 1 upstream_gene_variant HET FN3019-S Chr4 972693 972698 0 0 Deletion 5 INTERGENIC HET FN3019-S Chr5 15224124 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g26160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3019-S Chr5 16856851 16856854 0 0 Deletion 3 INTERGENIC HET FN3019-S Chr5 1919163 1919169 0 0 Deletion 6 INTERGENIC HET FN3019-S Chr5 25700829 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3019-S Chr5 27919734 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3019-S Chr5 5646482 Chr1 13012420 0 Translocation 0 LOC_Os01g23144 retrotransposon protein, putative, unclassified, expressed FN3019-S Chr5 5646482 Chr1 13012420 0 Translocation 0 LOC_Os05g10340 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3019-S Chr5 8648387 8648389 0 0 Deletion 2 downstream_gene_variant HET FN3019-S Chr5 9731001 9731031 0 0 Deletion 30 intron_variant HET FN3019-S Chr6 14040656 14040656 0 0 Insertion 1 downstream_gene_variant HET FN3019-S Chr6 16595957 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN3019-S Chr6 19050608 19050611 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os06g32760 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3019-S Chr6 20565593 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3019-S Chr6 24866993 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os06g41480 vrga1, putative, expressed FN3019-S Chr6 27993090 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3019-S Chr6 4568073 4568077 0 0 Deletion 4 upstream_gene_variant HET FN3019-S Chr6 7867398 7867432 0 0 Deletion 34 upstream_gene_variant HET FN3019-S Chr6 8386577 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3019-S Chr6 8619237 8619321 0 0 Deletion 84 inframe_deletion HET LOC_Os06g15210 expressed protein FN3019-S Chr7 11905752 Chr4 16178237 0 Translocation 0 LOC_Os04g27380 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3019-S Chr7 20987045 20987046 0 0 Deletion 1 upstream_gene_variant HET FN3019-S Chr7 23452877 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3019-S Chr7 24149448 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3019-S Chr7 28532846 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3019-S Chr8 11044110 11044113 0 0 Deletion 3 intron_variant HET FN3019-S Chr8 12104566 12104566 0 0 Insertion 20 intron_variant HET FN3019-S Chr8 16824905 16824905 0 0 Insertion 73 upstream_gene_variant HET FN3019-S Chr8 17740872 17740873 0 0 Deletion 1 frameshift_variant HET LOC_Os08g28990 transposon protein, putative, unclassified, expressed FN3019-S Chr8 18131722 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN3019-S Chr8 20204001 20227000 0 0 Deletion 22999 LOC_Os08g32630 FAD dependent oxidoreductase, putative, expressed FN3019-S Chr8 20204001 20227000 0 0 Deletion 22999 LOC_Os08g32650 cation efflux family protein, putative, expressed FN3019-S Chr8 20204001 20227000 0 0 Deletion 22999 LOC_Os08g32660 expressed protein FN3019-S Chr8 20204001 20227000 0 0 Deletion 22999 LOC_Os08g33830 polypyrimidine tract-binding protein, putative, expressed FN3019-S Chr8 21230591 21230595 0 0 Deletion 4 intergenic_region HET FN3019-S Chr8 737703 737706 0 0 Deletion 3 INTERGENIC HOMO FN3019-S Chr8 942398 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g02370 galactosyltransferase family protein, putative, expressed FN3019-S Chr9 13224235 13224281 0 0 Deletion 46 upstream_gene_variant HET FN3019-S Chr9 16751578 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3019-S Chr9 17666337 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3019-S Chr9 18583662 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3019-S Chr9 4774302 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3019-S Chr9 4888421 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g09130 retrotransposon protein, putative, Ty3-gypsy subclass, expressed