FN3028-S Chr1 10229001 10257000 0 0 Deletion 27999 LOC_Os01g18260 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr1 10229001 10257000 0 0 Deletion 27999 LOC_Os01g18270 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr1 10229001 10257000 0 0 Deletion 27999 LOC_Os01g18584 WRKY9, expressed FN3028-S Chr1 10470001 10501000 0 0 Deletion 30999 LOC_Os01g18610 retrotransposon protein, putative, LINE subclass, expressed FN3028-S Chr1 10470001 10501000 0 0 Deletion 30999 LOC_Os01g18620 transferase family protein, putative, expressed FN3028-S Chr1 10470001 10501000 0 0 Deletion 30999 LOC_Os01g18630 aspartic proteinase oryzasin-1 precursor, putative, expressed FN3028-S Chr1 10470001 10501000 0 0 Deletion 30999 LOC_Os01g18640 aminotransferase, putative, expressed FN3028-S Chr1 10470001 10501000 0 0 Deletion 30999 LOC_Os01g19460 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 11012001 11040000 0 0 Deletion 27999 LOC_Os01g19460 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 11012001 11040000 0 0 Deletion 27999 LOC_Os01g19470 nodal modulator 1 precursor, putative, expressed FN3028-S Chr1 11137001 11158000 0 0 Deletion 20999 LOC_Os01g19650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr1 11137001 11158000 0 0 Deletion 20999 LOC_Os01g19660 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 11137001 11158000 0 0 Deletion 20999 LOC_Os01g19670 expressed protein FN3028-S Chr1 11137001 11158000 0 0 Deletion 20999 LOC_Os01g20208 expressed protein FN3028-S Chr1 11511001 11550000 0 0 Deletion 38999 LOC_Os01g20700 hypothetical protein FN3028-S Chr1 11511001 11550000 0 0 Deletion 38999 LOC_Os01g20710 expressed protein FN3028-S Chr1 11511001 11550000 0 0 Deletion 38999 LOC_Os01g20720 CC-NBS-LRR, putative, expressed FN3028-S Chr1 11511001 11550000 0 0 Deletion 38999 LOC_Os01g20730 expressed protein FN3028-S Chr1 11511001 11550000 0 0 Deletion 38999 LOC_Os01g20740 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 11511001 11550000 0 0 Deletion 38999 LOC_Os01g20980 pectinesterase, putative, expressed FN3028-S Chr1 11718001 11737000 0 0 Deletion 18999 LOC_Os01g21000 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 11718001 11737000 0 0 Deletion 18999 LOC_Os01g21010 expressed protein FN3028-S Chr1 11718001 11737000 0 0 Deletion 18999 LOC_Os01g21450 expressed protein FN3028-S Chr1 11981001 12003000 0 0 Deletion 21999 LOC_Os01g21480 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr1 11981001 12003000 0 0 Deletion 21999 LOC_Os01g21490 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr1 12903001 12913000 0 0 Deletion 9999 FN3028-S Chr1 13152001 13166000 0 0 Deletion 13999 LOC_Os01g23430 transposon protein, putative, unclassified, expressed FN3028-S Chr1 13152001 13166000 0 0 Deletion 13999 LOC_Os01g23530 terpene synthase, putative, expressed FN3028-S Chr1 13215001 13230000 0 0 Deletion 14999 LOC_Os01g23530 terpene synthase, putative, expressed FN3028-S Chr1 13215001 13230000 0 0 Deletion 14999 LOC_Os01g23540 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 13215001 13230000 0 0 Deletion 14999 LOC_Os01g23550 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 13215001 13230000 0 0 Deletion 14999 LOC_Os01g23560 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 14257001 14270000 0 0 Deletion 12999 LOC_Os01g25250 expressed protein FN3028-S Chr1 14257001 14270000 0 0 Deletion 12999 LOC_Os01g25260 expressed protein FN3028-S Chr1 14257001 14270000 0 0 Deletion 12999 LOC_Os01g25270 pentatricopeptide repeat protein PPR986-12, putative, expressed FN3028-S Chr1 14257001 14270000 0 0 Deletion 12999 LOC_Os01g25330 SAC9, putative, expressed FN3028-S Chr1 14310001 14329000 0 0 Deletion 18999 LOC_Os01g25340 expressed protein FN3028-S Chr1 14310001 14329000 0 0 Deletion 18999 LOC_Os01g25360 esterase, putative, expressed FN3028-S Chr1 14310001 14329000 0 0 Deletion 18999 LOC_Os01g25370 SUMO protease, putative, expressed FN3028-S Chr1 14310001 14329000 0 0 Deletion 18999 LOC_Os01g25710 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr1 14572001 14604000 0 0 Deletion 31999 LOC_Os01g25710 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr1 14572001 14604000 0 0 Deletion 31999 LOC_Os01g25720 disease resistance protein RGA4, putative, expressed FN3028-S Chr1 14572001 14604000 0 0 Deletion 31999 LOC_Os01g25730 retrotransposon protein, putative, unclassified FN3028-S Chr1 14572001 14604000 0 0 Deletion 31999 LOC_Os01g25740 powdery mildew resistance protein PM3F, putative, expressed FN3028-S Chr1 14572001 14604000 0 0 Deletion 31999 LOC_Os01g25760 powdery mildew resistance protein PM3F, putative, expressed FN3028-S Chr1 15323001 15339000 0 0 Deletion 15999 LOC_Os01g27449 expressed protein FN3028-S Chr1 15323001 15339000 0 0 Deletion 15999 LOC_Os01g27470 ubiquitin family domain containing protein, expressed FN3028-S Chr1 15323001 15339000 0 0 Deletion 15999 LOC_Os01g27620 hypothetical protein FN3028-S Chr1 15402001 15426000 0 0 Deletion 23999 LOC_Os01g27630 glutathione S-transferase, putative, expressed FN3028-S Chr1 15402001 15426000 0 0 Deletion 23999 LOC_Os01g27640 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 15402001 15426000 0 0 Deletion 23999 LOC_Os01g27650 pentatricopeptide, putative, expressed FN3028-S Chr1 15402001 15426000 0 0 Deletion 23999 LOC_Os01g28360 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr1 15885001 15906000 0 0 Deletion 20999 LOC_Os01g28370 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr1 15885001 15906000 0 0 Deletion 20999 LOC_Os01g28380 retrotransposon, putative, centromere-specific FN3028-S Chr1 15885001 15906000 0 0 Deletion 20999 LOC_Os01g28420 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr1 15925001 15987000 0 0 Deletion 61999 LOC_Os01g28440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr1 15925001 15987000 0 0 Deletion 61999 LOC_Os01g28450 SCP-like extracellular protein, expressed FN3028-S Chr1 15925001 15987000 0 0 Deletion 61999 LOC_Os01g28474 transferase family protein, putative, expressed FN3028-S Chr1 15925001 15987000 0 0 Deletion 61999 LOC_Os01g28490 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr1 15925001 15987000 0 0 Deletion 61999 LOC_Os01g28500 SCP-like extracellular protein, expressed FN3028-S Chr1 15925001 15987000 0 0 Deletion 61999 LOC_Os01g28510 expressed protein FN3028-S Chr1 15925001 15987000 0 0 Deletion 61999 LOC_Os01g28520 OsFBX8 - F-box domain containing protein, expressed FN3028-S Chr1 15925001 15987000 0 0 Deletion 61999 LOC_Os01g28530 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr1 15925001 15987000 0 0 Deletion 61999 LOC_Os01g28540 stress regulated protein, putative, expressed FN3028-S Chr1 15925001 15987000 0 0 Deletion 61999 LOC_Os01g28550 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr1 15925001 15987000 0 0 Deletion 61999 LOC_Os01g28560 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr1 16111001 16142000 0 0 Deletion 30999 LOC_Os01g28770 hypothetical protein FN3028-S Chr1 16111001 16142000 0 0 Deletion 30999 LOC_Os01g28780 hypothetical protein FN3028-S Chr1 16111001 16142000 0 0 Deletion 30999 LOC_Os01g28790 PRAS-rich protein, putative, expressed FN3028-S Chr1 16111001 16142000 0 0 Deletion 30999 LOC_Os01g28800 retrotransposon protein, putative, unclassified FN3028-S Chr1 16111001 16142000 0 0 Deletion 30999 LOC_Os01g28810 expressed protein FN3028-S Chr1 16111001 16142000 0 0 Deletion 30999 LOC_Os01g29180 expressed protein FN3028-S Chr1 16348001 16388000 0 0 Deletion 39999 LOC_Os01g29190 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 16348001 16388000 0 0 Deletion 39999 LOC_Os01g29200 transposon protein, putative, unclassified FN3028-S Chr1 16348001 16388000 0 0 Deletion 39999 LOC_Os01g29210 hypothetical protein FN3028-S Chr1 16348001 16388000 0 0 Deletion 39999 LOC_Os01g29220 expressed protein FN3028-S Chr1 16348001 16388000 0 0 Deletion 39999 LOC_Os01g29230 expressed protein FN3028-S Chr1 16348001 16388000 0 0 Deletion 39999 LOC_Os01g29409 tRNA methyltransferase, putative, expressed FN3028-S Chr1 16492001 16513000 0 0 Deletion 20999 LOC_Os01g29430 tetratricopeptide-like helical, putative, expressed FN3028-S Chr1 16492001 16513000 0 0 Deletion 20999 LOC_Os01g29450 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 16492001 16513000 0 0 Deletion 20999 LOC_Os01g29469 dual specificity protein phosphatase, putative, expressed FN3028-S Chr1 16492001 16513000 0 0 Deletion 20999 LOC_Os01g29610 expressed protein FN3028-S Chr1 16597001 16699000 0 0 Deletion 101999 LOC_Os01g29620 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr1 16597001 16699000 0 0 Deletion 101999 LOC_Os01g29640 expressed protein FN3028-S Chr1 16597001 16699000 0 0 Deletion 101999 LOC_Os01g29650 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr1 16597001 16699000 0 0 Deletion 101999 LOC_Os01g29660 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr1 16597001 16699000 0 0 Deletion 101999 LOC_Os01g29670 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr1 16597001 16699000 0 0 Deletion 101999 LOC_Os01g29680 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr1 16597001 16699000 0 0 Deletion 101999 LOC_Os01g29690 expressed protein FN3028-S Chr1 16597001 16699000 0 0 Deletion 101999 LOC_Os01g29700 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr1 16597001 16699000 0 0 Deletion 101999 LOC_Os01g29710 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr1 16597001 16699000 0 0 Deletion 101999 LOC_Os01g29720 expressed protein FN3028-S Chr1 16597001 16699000 0 0 Deletion 101999 LOC_Os01g29730 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr1 16597001 16699000 0 0 Deletion 101999 LOC_Os01g29740 expressed protein FN3028-S Chr1 16597001 16699000 0 0 Deletion 101999 LOC_Os01g29750 transposon protein, putative, unclassified, expressed FN3028-S Chr1 16597001 16699000 0 0 Deletion 101999 LOC_Os01g29760 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 16597001 16699000 0 0 Deletion 101999 LOC_Os01g29780 expressed protein FN3028-S Chr1 16597001 16699000 0 0 Deletion 101999 LOC_Os01g29790 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 16597001 16699000 0 0 Deletion 101999 LOC_Os01g29804 expressed protein FN3028-S Chr1 16597001 16699000 0 0 Deletion 101999 LOC_Os01g31240 retrotransposon protein, putative, unclassified FN3028-S Chr1 17084001 17118000 0 0 Deletion 33999 LOC_Os01g31250 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr1 17084001 17118000 0 0 Deletion 33999 LOC_Os01g31260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr1 17084001 17118000 0 0 Deletion 33999 LOC_Os01g31270 annexin, putative, expressed FN3028-S Chr1 17084001 17118000 0 0 Deletion 33999 LOC_Os01g31280 expressed protein FN3028-S Chr1 17084001 17118000 0 0 Deletion 33999 LOC_Os01g31290 retrotransposon, putative, centromere-specific FN3028-S Chr1 17084001 17118000 0 0 Deletion 33999 LOC_Os01g31714 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 17355001 17416000 0 0 Deletion 60999 LOC_Os01g31714 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 17355001 17416000 0 0 Deletion 60999 LOC_Os01g31730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr1 17355001 17416000 0 0 Deletion 60999 LOC_Os01g31740 retrotransposon protein, putative, unclassified FN3028-S Chr1 17355001 17416000 0 0 Deletion 60999 LOC_Os01g31750 transposon protein, putative, unclassified, expressed FN3028-S Chr1 17355001 17416000 0 0 Deletion 60999 LOC_Os01g31760 acyl-ACP thioesterase, putative, expressed FN3028-S Chr1 17355001 17416000 0 0 Deletion 60999 LOC_Os01g31770 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed FN3028-S Chr1 17355001 17416000 0 0 Deletion 60999 LOC_Os01g31780 expressed protein FN3028-S Chr1 17541001 17582000 0 0 Deletion 40999 LOC_Os01g32060 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 17541001 17582000 0 0 Deletion 40999 LOC_Os01g32070 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 17541001 17582000 0 0 Deletion 40999 LOC_Os01g32080 thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed FN3028-S Chr1 17541001 17582000 0 0 Deletion 40999 LOC_Os01g32090 PPR repeat domain containing protein, putative, expressed FN3028-S Chr1 17541001 17582000 0 0 Deletion 40999 LOC_Os01g32100 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr1 17541001 17582000 0 0 Deletion 40999 LOC_Os01g32110 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr1 17541001 17582000 0 0 Deletion 40999 LOC_Os01g32120 OsCML11 - Calmodulin-related calcium sensor protein, expressed FN3028-S Chr1 17541001 17582000 0 0 Deletion 40999 LOC_Os01g32980 mitochondrial carrier protein, putative, expressed FN3028-S Chr1 18104001 18115000 0 0 Deletion 10999 LOC_Os01g33160 stress responsive A/B Barrel domain containing protein, expressed FN3028-S Chr1 18261001 18286000 0 0 Deletion 24999 LOC_Os01g33180 hypothetical protein FN3028-S Chr1 18261001 18286000 0 0 Deletion 24999 LOC_Os01g33190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr1 18261001 18286000 0 0 Deletion 24999 LOC_Os01g33204 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 18331001 18382000 0 0 Deletion 50999 LOC_Os01g33270 hypothetical protein FN3028-S Chr1 18331001 18382000 0 0 Deletion 50999 LOC_Os01g33290 hypothetical protein FN3028-S Chr1 18331001 18382000 0 0 Deletion 50999 LOC_Os01g33300 polygalacturonase, putative, expressed FN3028-S Chr1 18331001 18382000 0 0 Deletion 50999 LOC_Os01g33324 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr1 18331001 18382000 0 0 Deletion 50999 LOC_Os01g33350 zinc-binding protein, putative, expressed FN3028-S Chr1 18331001 18382000 0 0 Deletion 50999 LOC_Os01g33360 DnaK family protein, putative, expressed FN3028-S Chr1 18331001 18382000 0 0 Deletion 50999 LOC_Os01g33370 zinc-binding protein, putative, expressed FN3028-S Chr1 18331001 18382000 0 0 Deletion 50999 LOC_Os01g33380 retrotransposon protein, putative, unclassified FN3028-S Chr1 18945001 18974000 0 0 Deletion 28999 LOC_Os01g34360 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr1 18945001 18974000 0 0 Deletion 28999 LOC_Os01g34374 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr1 18945001 18974000 0 0 Deletion 28999 LOC_Os01g34390 prenyltransferase, putative, expressed FN3028-S Chr1 18945001 18974000 0 0 Deletion 28999 LOC_Os01g34400 transposon protein, putative, Pong sub-class, expressed FN3028-S Chr1 18945001 18974000 0 0 Deletion 28999 LOC_Os01g34480 NAD dependent epimerase/dehydratase family protein, putative, expressed FN3028-S Chr1 19013001 19022000 0 0 Deletion 8999 LOC_Os01g34490 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 19013001 19022000 0 0 Deletion 8999 LOC_Os01g34550 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 19055001 19073000 0 0 Deletion 17999 LOC_Os01g34560 3-ketoacyl-CoA synthase, putative, expressed FN3028-S Chr1 19055001 19073000 0 0 Deletion 17999 LOC_Os01g34570 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr1 19055001 19073000 0 0 Deletion 17999 LOC_Os01g34580 hypothetical protein FN3028-S Chr1 19055001 19073000 0 0 Deletion 17999 LOC_Os01g34710 transposon protein, putative, unclassified, expressed FN3028-S Chr1 19140001 19170000 0 0 Deletion 29999 LOC_Os01g34720 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 19140001 19170000 0 0 Deletion 29999 LOC_Os01g34730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr1 19140001 19170000 0 0 Deletion 29999 LOC_Os01g34740 transposon protein, putative, unclassified, expressed FN3028-S Chr1 19140001 19170000 0 0 Deletion 29999 LOC_Os01g34750 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr1 19140001 19170000 0 0 Deletion 29999 LOC_Os01g34760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr1 19140001 19170000 0 0 Deletion 29999 LOC_Os01g34890 GLUCAN SYNTHASE-LIKE protein, putative, expressed FN3028-S Chr1 19261001 19318000 0 0 Deletion 56999 LOC_Os01g34900 GLUCAN SYNTHASE-LIKE protein, putative, expressed FN3028-S Chr1 19261001 19318000 0 0 Deletion 56999 LOC_Os01g34910 expressed protein FN3028-S Chr1 19261001 19318000 0 0 Deletion 56999 LOC_Os01g34920 beta-galactosidase precursor, putative, expressed FN3028-S Chr1 19261001 19318000 0 0 Deletion 56999 LOC_Os01g34930 callose synthase, putative, expressed FN3028-S Chr1 19261001 19318000 0 0 Deletion 56999 LOC_Os01g35050 early-responsive to dehydration protein-related, putative, expressed FN3028-S Chr1 19403001 19435000 0 0 Deletion 31999 LOC_Os01g35070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr1 19403001 19435000 0 0 Deletion 31999 LOC_Os01g35080 retrotransposon protein, putative, unclassified FN3028-S Chr1 19403001 19435000 0 0 Deletion 31999 LOC_Os01g35090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr1 19403001 19435000 0 0 Deletion 31999 LOC_Os01g35100 zinc finger, C3HC4 type domain containing protein, expressed FN3028-S Chr1 19491001 19513000 0 0 Deletion 21999 LOC_Os01g35220 transposon protein, putative, unclassified, expressed FN3028-S Chr1 19491001 19513000 0 0 Deletion 21999 LOC_Os01g35230 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed FN3028-S Chr1 19491001 19513000 0 0 Deletion 21999 LOC_Os01g35240 hypothetical protein FN3028-S Chr1 19491001 19513000 0 0 Deletion 21999 LOC_Os01g35470 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr1 19700001 19728000 0 0 Deletion 27999 LOC_Os01g35610 expressed protein FN3028-S Chr1 19700001 19728000 0 0 Deletion 27999 LOC_Os01g35620 retrotransposon protein, putative, unclassified FN3028-S Chr1 19700001 19728000 0 0 Deletion 27999 LOC_Os01g35630 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr1 19700001 19728000 0 0 Deletion 27999 LOC_Os01g35720 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr1 19704553 19704554 0 0 Deletion 1 intron_variant HET FN3028-S Chr1 19776001 19793000 0 0 Deletion 16999 LOC_Os01g35730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr1 19776001 19793000 0 0 Deletion 16999 LOC_Os01g36390 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed FN3028-S Chr1 20190001 20230000 0 0 Deletion 39999 LOC_Os01g36390 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed FN3028-S Chr1 20190001 20230000 0 0 Deletion 39999 LOC_Os01g36400 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr1 20190001 20230000 0 0 Deletion 39999 LOC_Os01g36410 expressed protein FN3028-S Chr1 20190001 20230000 0 0 Deletion 39999 LOC_Os01g36420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr1 20190001 20230000 0 0 Deletion 39999 LOC_Os01g36430 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 20190001 20230000 0 0 Deletion 39999 LOC_Os01g36440 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 20415001 20436000 0 0 Deletion 20999 LOC_Os01g36766 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr1 20415001 20436000 0 0 Deletion 20999 LOC_Os01g36772 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr1 20415001 20436000 0 0 Deletion 20999 LOC_Os01g36780 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr1 20415001 20436000 0 0 Deletion 20999 LOC_Os01g36840 ATP-binding region, ATPase-like domain containing protein, expressed FN3028-S Chr1 20495001 20576000 0 0 Deletion 80999 LOC_Os01g36850 transposon protein, putative, Pong sub-class, expressed FN3028-S Chr1 20495001 20576000 0 0 Deletion 80999 LOC_Os01g36860 DEAD-box ATP-dependent RNA helicase 40, putative, expressed FN3028-S Chr1 20495001 20576000 0 0 Deletion 80999 LOC_Os01g36870 phox domain-containing protein, putative, expressed FN3028-S Chr1 20495001 20576000 0 0 Deletion 80999 LOC_Os01g36880 hypothetical protein FN3028-S Chr1 20495001 20576000 0 0 Deletion 80999 LOC_Os01g36890 DEAD-box ATP-dependent RNA helicase, putative, expressed FN3028-S Chr1 20495001 20576000 0 0 Deletion 80999 LOC_Os01g36900 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 20495001 20576000 0 0 Deletion 80999 LOC_Os01g36910 transposon protein, putative, unclassified, expressed FN3028-S Chr1 20495001 20576000 0 0 Deletion 80999 LOC_Os01g36920 DEAD-box ATP-dependent RNA helicase, putative, expressed FN3028-S Chr1 20495001 20576000 0 0 Deletion 80999 LOC_Os01g36984 expressed protein FN3028-S Chr1 21181001 21203000 0 0 Deletion 21999 LOC_Os01g37850 expressed protein FN3028-S Chr1 21181001 21203000 0 0 Deletion 21999 LOC_Os01g37860 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 21181001 21203000 0 0 Deletion 21999 LOC_Os01g37870 PPR repeat domain containing protein, putative, expressed FN3028-S Chr1 21181001 21203000 0 0 Deletion 21999 LOC_Os01g38330 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr1 21496001 21528000 0 0 Deletion 31999 LOC_Os01g38340 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 21496001 21528000 0 0 Deletion 31999 LOC_Os01g38359 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed FN3028-S Chr1 21496001 21528000 0 0 Deletion 31999 LOC_Os01g39330 helix-loop-helix DNA-binding domain containing protein, expressed FN3028-S Chr1 22573001 22592000 0 0 Deletion 18999 LOC_Os01g40020 expressed protein FN3028-S Chr1 22573001 22592000 0 0 Deletion 18999 LOC_Os01g40030 expressed protein FN3028-S Chr1 22573001 22592000 0 0 Deletion 18999 LOC_Os01g40040 expressed protein FN3028-S Chr1 22573001 22592000 0 0 Deletion 18999 LOC_Os01g40050 peptidyl-prolyl cis-trans isomerase, putative, expressed FN3028-S Chr1 22573001 22592000 0 0 Deletion 18999 LOC_Os01g40230 transposon protein, putative, unclassified, expressed FN3028-S Chr1 22705001 22727000 0 0 Deletion 21999 LOC_Os01g40240 expressed protein FN3028-S Chr1 22705001 22727000 0 0 Deletion 21999 LOC_Os01g40250 down-regulated in metastasis family protein, expressed FN3028-S Chr1 22705001 22727000 0 0 Deletion 21999 LOC_Os01g41070 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 23666001 23690000 0 0 Deletion 23999 LOC_Os01g41820 cytochrome P450 72A1, putative, expressed FN3028-S Chr1 23666001 23690000 0 0 Deletion 23999 LOC_Os01g41834 chalcone synthase, putative, expressed FN3028-S Chr1 23666001 23690000 0 0 Deletion 23999 LOC_Os01g42560 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 24199001 24211000 0 0 Deletion 11999 LOC_Os01g42570 retrotransposon protein, putative, unclassified FN3028-S Chr1 24199001 24211000 0 0 Deletion 11999 LOC_Os01g42580 retrotransposon protein, putative, unclassified FN3028-S Chr1 24199001 24211000 0 0 Deletion 11999 LOC_Os01g42590 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 24199001 24211000 0 0 Deletion 11999 LOC_Os01g42920 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr1 24205784 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3028-S Chr1 24419001 24438000 0 0 Deletion 18999 LOC_Os01g42934 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr1 24419001 24438000 0 0 Deletion 18999 LOC_Os01g42950 protein kinase family protein, putative, expressed FN3028-S Chr1 24419001 24438000 0 0 Deletion 18999 LOC_Os01g43390 uroporphyrinogen decarboxylase, putative, expressed FN3028-S Chr1 25038001 25068000 0 0 Deletion 29999 LOC_Os01g43700 cytochrome P450 72A1, putative, expressed FN3028-S Chr1 25038001 25068000 0 0 Deletion 29999 LOC_Os01g43710 cytochrome P450 72A1, putative, expressed FN3028-S Chr1 25038001 25068000 0 0 Deletion 29999 LOC_Os01g43720 cytochrome P450 72A1, putative, expressed FN3028-S Chr1 25038001 25068000 0 0 Deletion 29999 LOC_Os01g43740 cytochrome P450 72A1, putative, expressed FN3028-S Chr1 25038001 25068000 0 0 Deletion 29999 LOC_Os01g43750 cytochrome P450 72A1, putative, expressed FN3028-S Chr1 25038001 25068000 0 0 Deletion 29999 LOC_Os01g43980 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 26379274 26379275 0 0 Deletion 1 downstream_gene_variant HET FN3028-S Chr1 27259001 27276000 0 0 Deletion 16999 LOC_Os01g47660 60S ribosomal protein L18a, putative, expressed FN3028-S Chr1 27259001 27276000 0 0 Deletion 16999 LOC_Os01g47670 expressed protein FN3028-S Chr1 27259001 27276000 0 0 Deletion 16999 LOC_Os01g47680 60S ribosomal protein L18a-1, putative, expressed FN3028-S Chr1 27259001 27276000 0 0 Deletion 16999 LOC_Os01g47690 metallo-beta-lactamase family protein, putative, expressed FN3028-S Chr1 27259001 27276000 0 0 Deletion 16999 LOC_Os01g48920 beclin-1, putative, expressed FN3028-S Chr1 28071001 28092000 0 0 Deletion 20999 LOC_Os01g48930 splicing factor-related, putative, expressed FN3028-S Chr1 28071001 28092000 0 0 Deletion 20999 LOC_Os01g48940 expressed protein FN3028-S Chr1 28071001 28092000 0 0 Deletion 20999 LOC_Os01g48950 expressed protein FN3028-S Chr1 28071001 28092000 0 0 Deletion 20999 LOC_Os01g48960 glutamate synthase, chloroplast precursor, putative, expressed FN3028-S Chr1 28071001 28092000 0 0 Deletion 20999 LOC_Os01g49300 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 28341001 28370000 0 0 Deletion 28999 LOC_Os01g49310 expressed protein FN3028-S Chr1 28341001 28370000 0 0 Deletion 28999 LOC_Os01g49320 glycosyl hydrolase, putative, expressed FN3028-S Chr1 28341001 28370000 0 0 Deletion 28999 LOC_Os01g49330 formyl transferase, putative, expressed FN3028-S Chr1 28341001 28370000 0 0 Deletion 28999 LOC_Os01g49340 arginine/serine-rich coiled-coil protein 1, putative, expressed FN3028-S Chr1 28341001 28370000 0 0 Deletion 28999 LOC_Os01g51154 single myb histone, putative, expressed FN3028-S Chr1 29400001 29424000 0 0 Deletion 23999 LOC_Os01g51170 glycylpeptide N-tetradecanoyltransferase 1, putative, expressed FN3028-S Chr1 29400001 29424000 0 0 Deletion 23999 LOC_Os01g51180 transposon protein, putative, unclassified, expressed FN3028-S Chr1 29400001 29424000 0 0 Deletion 23999 LOC_Os01g51190 expressed protein FN3028-S Chr1 29400001 29424000 0 0 Deletion 23999 LOC_Os01g51220 transport protein particle component, Bet3, domain containing protein, expressed FN3028-S Chr1 29443001 29461000 0 0 Deletion 17999 LOC_Os01g51230 IQ calmodulin-binding motif domain containing protein, expressed FN3028-S Chr1 29443001 29461000 0 0 Deletion 17999 LOC_Os01g51240 hypothetical protein FN3028-S Chr1 29443001 29461000 0 0 Deletion 17999 LOC_Os01g51250 mitochondrial carrier protein, putative, expressed FN3028-S Chr1 29443001 29461000 0 0 Deletion 17999 LOC_Os01g51800 expressed protein FN3028-S Chr1 29785001 29812000 0 0 Deletion 26999 LOC_Os01g51810 pentatricopeptide, putative, expressed FN3028-S Chr1 29785001 29812000 0 0 Deletion 26999 LOC_Os01g51820 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr1 29785001 29812000 0 0 Deletion 26999 LOC_Os01g51830 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr1 29785001 29812000 0 0 Deletion 26999 LOC_Os01g51840 IQ calmodulin-binding motif family protein, putative, expressed FN3028-S Chr1 29785001 29812000 0 0 Deletion 26999 LOC_Os01g51850 expressed protein FN3028-S Chr1 29785001 29812000 0 0 Deletion 26999 LOC_Os01g52214 ubiquinone oxidoreductase, putative, expressed FN3028-S Chr1 30023001 30046000 0 0 Deletion 22999 LOC_Os01g52230 phosphoethanolamine/phosphocholine phosphatase, putative, expressed FN3028-S Chr1 30023001 30046000 0 0 Deletion 22999 LOC_Os01g52240 chlorophyll A-B binding protein, putative, expressed FN3028-S Chr1 30023001 30046000 0 0 Deletion 22999 LOC_Os01g52250 starch synthase, putative, expressed FN3028-S Chr1 30023001 30046000 0 0 Deletion 22999 LOC_Os01g52260 serine acetyltransferase protein, putative, expressed FN3028-S Chr1 30023001 30046000 0 0 Deletion 22999 LOC_Os01g53890 RNA methyltransferase, TrmH family protein, putative, expressed FN3028-S Chr1 30983001 31009000 0 0 Deletion 25999 LOC_Os01g53900 elongation factor, putative, expressed FN3028-S Chr1 30983001 31009000 0 0 Deletion 25999 LOC_Os01g53910 dehydrogenase, putative, expressed FN3028-S Chr1 30983001 31009000 0 0 Deletion 25999 LOC_Os01g53920 receptor-like protein kinase 5 precursor, putative, expressed FN3028-S Chr1 30983001 31009000 0 0 Deletion 25999 LOC_Os01g54240 nucleoporin, putative, expressed FN3028-S Chr1 31211001 31244000 0 0 Deletion 32999 LOC_Os01g54250 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 31211001 31244000 0 0 Deletion 32999 LOC_Os01g54260 retrotransposon protein, putative, unclassified FN3028-S Chr1 31211001 31244000 0 0 Deletion 32999 LOC_Os01g54270 transposon protein, putative, unclassified, expressed FN3028-S Chr1 31211001 31244000 0 0 Deletion 32999 LOC_Os01g54280 conserved hypothetical protein FN3028-S Chr1 31211001 31244000 0 0 Deletion 32999 LOC_Os01g54290 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 31211001 31244000 0 0 Deletion 32999 LOC_Os01g54420 dynamin family protein, putative, expressed FN3028-S Chr1 31312001 31331000 0 0 Deletion 18999 LOC_Os01g54424 expressed protein FN3028-S Chr1 31312001 31331000 0 0 Deletion 18999 LOC_Os01g54430 plastocyanin-like domain containing protein, putative, expressed FN3028-S Chr1 31312001 31331000 0 0 Deletion 18999 LOC_Os01g54440 expressed protein FN3028-S Chr1 31312001 31331000 0 0 Deletion 18999 LOC_Os01g54450 DUF584 domain containing protein, putative, expressed FN3028-S Chr1 31312001 31331000 0 0 Deletion 18999 LOC_Os01g54460 expressed protein FN3028-S Chr1 31312001 31331000 0 0 Deletion 18999 LOC_Os01g55660 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr1 32067001 32094000 0 0 Deletion 26999 LOC_Os01g55670 expressed protein FN3028-S Chr1 32067001 32094000 0 0 Deletion 26999 LOC_Os01g55690 glutelin, putative, expressed FN3028-S Chr1 32067001 32094000 0 0 Deletion 26999 LOC_Os01g55700 NLI interacting factor-like phosphatase, putative, expressed FN3028-S Chr1 32067001 32094000 0 0 Deletion 26999 LOC_Os01g55710 DNA-binding protein, putative, expressed FN3028-S Chr1 32067001 32094000 0 0 Deletion 26999 LOC_Os01g55720 expressed protein FN3028-S Chr1 32067001 32094000 0 0 Deletion 26999 LOC_Os01g55730 AGAP003732-PA, putative, expressed FN3028-S Chr1 32067001 32094000 0 0 Deletion 26999 LOC_Os01g55940 OsGH3.2 - Probable indole-3-acetic acid-amido synthetase, expressed FN3028-S Chr1 32223001 32253000 0 0 Deletion 29999 LOC_Os01g55950 acetamidase, putative, expressed FN3028-S Chr1 32223001 32253000 0 0 Deletion 29999 LOC_Os01g55960 pentatricopeptide, putative, expressed FN3028-S Chr1 32223001 32253000 0 0 Deletion 29999 LOC_Os01g55974 deoxycytidylate deaminase, putative, expressed FN3028-S Chr1 32223001 32253000 0 0 Deletion 29999 LOC_Os01g55990 expressed protein FN3028-S Chr1 32223001 32253000 0 0 Deletion 29999 LOC_Os01g56000 RNA recognition motif containing protein, expressed FN3028-S Chr1 32223001 32253000 0 0 Deletion 29999 LOC_Os01g56010 serpin domain containing protein, putative, expressed FN3028-S Chr1 32223001 32253000 0 0 Deletion 29999 LOC_Os01g56020 expressed protein FN3028-S Chr1 32223001 32253000 0 0 Deletion 29999 LOC_Os01g56220 expressed protein FN3028-S Chr1 32373001 32392000 0 0 Deletion 18999 LOC_Os01g56230 transmembrane protein 56, putative, expressed FN3028-S Chr1 32373001 32392000 0 0 Deletion 18999 LOC_Os01g56235 expressed protein FN3028-S Chr1 32373001 32392000 0 0 Deletion 18999 LOC_Os01g56240 OsSAUR2 - Auxin-responsive SAUR gene family member, expressed FN3028-S Chr1 32373001 32392000 0 0 Deletion 18999 LOC_Os01g56340 transposon protein, putative, unclassified, expressed FN3028-S Chr1 32466001 32512000 0 0 Deletion 45999 LOC_Os01g56350 PTAC12, putative, expressed FN3028-S Chr1 32466001 32512000 0 0 Deletion 45999 LOC_Os01g56360 wax synthase, putative, expressed FN3028-S Chr1 32466001 32512000 0 0 Deletion 45999 LOC_Os01g56370 wax synthase, putative, expressed FN3028-S Chr1 32466001 32512000 0 0 Deletion 45999 LOC_Os01g56380 decarboxylase, putative, expressed FN3028-S Chr1 32466001 32512000 0 0 Deletion 45999 LOC_Os01g56390 OsFBX26 - F-box domain containing protein, expressed FN3028-S Chr1 32466001 32512000 0 0 Deletion 45999 LOC_Os01g56510 periplasmic beta-glucosidase precursor, putative, expressed FN3028-S Chr1 32577001 32601000 0 0 Deletion 23999 LOC_Os01g56520 double-stranded RNA binding motif containing protein, expressed FN3028-S Chr1 32577001 32601000 0 0 Deletion 23999 LOC_Os01g56530 DUF260 domain containing protein, putative, expressed FN3028-S Chr1 32577001 32601000 0 0 Deletion 23999 LOC_Os01g56540 histone-lysine N-methyltransferase SUVR3, putative, expressed FN3028-S Chr1 32577001 32601000 0 0 Deletion 23999 LOC_Os01g56550 transcription initiation factor IIF beta subunit, putative, expressed FN3028-S Chr1 32577001 32601000 0 0 Deletion 23999 LOC_Os01g56580 CK1_CaseinKinase_1a.3 - CK1 includes the casein kinase 1 kinases, expressed FN3028-S Chr1 32622001 32652000 0 0 Deletion 29999 LOC_Os01g56590 guanine nucleotide exchange family protein, putative, expressed FN3028-S Chr1 32622001 32652000 0 0 Deletion 29999 LOC_Os01g56880 purple acid phosphatase precursor, putative, expressed FN3028-S Chr1 32849001 32878000 0 0 Deletion 28999 LOC_Os01g56890 expressed protein FN3028-S Chr1 32849001 32878000 0 0 Deletion 28999 LOC_Os01g56900 expressed protein FN3028-S Chr1 32849001 32878000 0 0 Deletion 28999 LOC_Os01g56910 expressed protein FN3028-S Chr1 33289001 33308000 0 0 Deletion 18999 LOC_Os01g57599 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 33289001 33308000 0 0 Deletion 18999 LOC_Os01g58444 expressed protein FN3028-S Chr1 33984936 33984936 0 0 Insertion 1 downstream_gene_variant HET FN3028-S Chr1 34214001 34251000 0 0 Deletion 36999 LOC_Os01g59230 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 34214001 34251000 0 0 Deletion 36999 LOC_Os01g59240 expressed protein FN3028-S Chr1 34214001 34251000 0 0 Deletion 36999 LOC_Os01g59250 expressed protein FN3028-S Chr1 34214001 34251000 0 0 Deletion 36999 LOC_Os01g59260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr1 343001 370000 0 0 Deletion 26999 LOC_Os01g08200 ubiquitin carboxyl-terminal hydrolase 14, putative, expressed FN3028-S Chr1 34382001 34406000 0 0 Deletion 23999 LOC_Os01g59450 ZOS1-13 - C2H2 zinc finger protein, expressed FN3028-S Chr1 34382001 34406000 0 0 Deletion 23999 LOC_Os01g59460 expressed protein FN3028-S Chr1 34382001 34406000 0 0 Deletion 23999 LOC_Os01g59470 expressed protein FN3028-S Chr1 34382001 34406000 0 0 Deletion 23999 LOC_Os01g59480 expressed protein FN3028-S Chr1 34382001 34406000 0 0 Deletion 23999 LOC_Os01g59710 expressed protein FN3028-S Chr1 34538001 34564000 0 0 Deletion 25999 LOC_Os01g59720 expressed protein FN3028-S Chr1 34538001 34564000 0 0 Deletion 25999 LOC_Os01g59730 ribosomal protein L7Ae, putative, expressed FN3028-S Chr1 34538001 34564000 0 0 Deletion 25999 LOC_Os01g59740 expressed protein FN3028-S Chr1 34538001 34564000 0 0 Deletion 25999 LOC_Os01g59750 histidine triad family protein, putative, expressed FN3028-S Chr1 34538001 34564000 0 0 Deletion 25999 LOC_Os01g61610 flavonol synthase/flavanone 3-hydroxylase, putative, expressed FN3028-S Chr1 34919917 34919922 0 0 Deletion 5 upstream_gene_variant HET FN3028-S Chr1 35280909 35280909 0 0 Insertion 1 downstream_gene_variant HET FN3028-S Chr1 35384566 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3028-S Chr1 35627001 35641000 0 0 Deletion 13999 LOC_Os01g61610 flavonol synthase/flavanone 3-hydroxylase, putative, expressed FN3028-S Chr1 35877001 35930000 0 0 Deletion 52999 LOC_Os01g61990 ankyrin repeat-containing protein, putative, expressed FN3028-S Chr1 35877001 35930000 0 0 Deletion 52999 LOC_Os01g62000 pectate lyase 4 precursor, putative, expressed FN3028-S Chr1 35877001 35930000 0 0 Deletion 52999 LOC_Os01g62010 hydrolase, alpha/beta fold family domain containing protein, expressed FN3028-S Chr1 35877001 35930000 0 0 Deletion 52999 LOC_Os01g62020 NAD dependent epimerase/dehydratase family domain containing protein, expressed FN3028-S Chr1 35877001 35930000 0 0 Deletion 52999 LOC_Os01g62030 disease resistance-responsive family protein, putative, expressed FN3028-S Chr1 35877001 35930000 0 0 Deletion 52999 LOC_Os01g62040 ruvB-like, putative, expressed FN3028-S Chr1 35877001 35930000 0 0 Deletion 52999 LOC_Os01g62050 expressed protein FN3028-S Chr1 35877001 35930000 0 0 Deletion 52999 LOC_Os01g62060 plant-specific domain TIGR01589 family protein, expressed FN3028-S Chr1 35877001 35930000 0 0 Deletion 52999 LOC_Os01g62070 cation efflux family protein, putative, expressed FN3028-S Chr1 35877001 35930000 0 0 Deletion 52999 LOC_Os01g62080 serine/threonine-protein kinase AFC1, putative, expressed FN3028-S Chr1 35877001 35930000 0 0 Deletion 52999 LOC_Os01g62630 aspartic proteinase nepenthesin precursor, putative, expressed FN3028-S Chr1 36265001 36288000 0 0 Deletion 22999 LOC_Os01g62640 zinc finger, C3HC4 type domain containing protein, expressed FN3028-S Chr1 36265001 36288000 0 0 Deletion 22999 LOC_Os01g62650 pumilio-family RNA binding protein, putative, expressed FN3028-S Chr1 36265001 36288000 0 0 Deletion 22999 LOC_Os01g62660 MYB family transcription factor, putative, expressed FN3028-S Chr1 36265001 36288000 0 0 Deletion 22999 LOC_Os01g63430 expressed protein FN3028-S Chr1 36751001 36786000 0 0 Deletion 34999 LOC_Os01g63444 expressed protein FN3028-S Chr1 36751001 36786000 0 0 Deletion 34999 LOC_Os01g63460 MYB family transcription factor, putative, expressed FN3028-S Chr1 36751001 36786000 0 0 Deletion 34999 LOC_Os01g63470 C2 domain containing protein, expressed FN3028-S Chr1 37103001 37139000 0 0 Deletion 35999 LOC_Os01g63950 expressed protein FN3028-S Chr1 37103001 37139000 0 0 Deletion 35999 LOC_Os01g63960 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr1 37103001 37139000 0 0 Deletion 35999 LOC_Os01g63970 sialyltransferase family domain containing protein, expressed FN3028-S Chr1 37103001 37139000 0 0 Deletion 35999 LOC_Os01g65850 CHD3-type chromatin-remodeling factor PICKLE, putative, expressed FN3028-S Chr1 3773308 3773308 0 0 Insertion 4 intron_variant HET FN3028-S Chr1 38231001 38249000 0 0 Deletion 17999 LOC_Os01g65860 ANTH domain containing protein, expressed FN3028-S Chr1 38231001 38249000 0 0 Deletion 17999 LOC_Os01g65870 expressed protein FN3028-S Chr1 38231001 38249000 0 0 Deletion 17999 LOC_Os01g66010 amino acid transporter, putative, expressed FN3028-S Chr1 38482001 38505000 0 0 Deletion 22999 LOC_Os01g66260 expressed protein FN3028-S Chr1 38482001 38505000 0 0 Deletion 22999 LOC_Os01g66270 AP2 domain containing protein, expressed FN3028-S Chr1 38482001 38505000 0 0 Deletion 22999 LOC_Os01g66280 transcriptional regulator, putative, expressed FN3028-S Chr1 38482001 38505000 0 0 Deletion 22999 LOC_Os01g66290 OsMADS21 - MADS-box family gene with MIKCc type-box, expressed FN3028-S Chr1 38482001 38505000 0 0 Deletion 22999 LOC_Os01g66320 expressed protein FN3028-S Chr1 38675040 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3028-S Chr1 38705001 38744000 0 0 Deletion 38999 LOC_Os01g66650 expressed protein FN3028-S Chr1 38705001 38744000 0 0 Deletion 38999 LOC_Os01g66660 expressed protein FN3028-S Chr1 38705001 38744000 0 0 Deletion 38999 LOC_Os01g66670 expressed protein FN3028-S Chr1 38705001 38744000 0 0 Deletion 38999 LOC_Os01g66680 S-domain receptor-like protein kinase, putative, expressed FN3028-S Chr1 38705001 38744000 0 0 Deletion 38999 LOC_Os01g66690 ZIP4/SPO22, putative, expressed FN3028-S Chr1 38705001 38744000 0 0 Deletion 38999 LOC_Os01g66700 beta-hexosaminidase precursor, putative, expressed FN3028-S Chr1 38705001 38744000 0 0 Deletion 38999 LOC_Os01g67740 chromosome segregation protein, putative, expressed FN3028-S Chr1 39373001 39390000 0 0 Deletion 16999 LOC_Os01g67750 expressed protein FN3028-S Chr1 39373001 39390000 0 0 Deletion 16999 LOC_Os01g67760 expressed protein FN3028-S Chr1 39373001 39390000 0 0 Deletion 16999 LOC_Os01g67770 two-component response regulator, putative, expressed FN3028-S Chr1 39373001 39390000 0 0 Deletion 16999 LOC_Os01g68120 DCL3, putative, expressed FN3028-S Chr1 39596001 39630000 0 0 Deletion 33999 LOC_Os01g68130 expressed protein FN3028-S Chr1 39596001 39630000 0 0 Deletion 33999 LOC_Os01g68140 expressed protein FN3028-S Chr1 39596001 39630000 0 0 Deletion 33999 LOC_Os01g68160 ZOS1-22 - C2H2 zinc finger protein, expressed FN3028-S Chr1 39596001 39630000 0 0 Deletion 33999 LOC_Os01g69850 OsMADS65 - MADS-box family gene with MIKC* type-box, expressed FN3028-S Chr1 40345001 40364000 0 0 Deletion 18999 LOC_Os01g70740 expressed protein FN3028-S Chr1 40947001 40982000 0 0 Deletion 34999 LOC_Os01g70750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr1 40947001 40982000 0 0 Deletion 34999 LOC_Os01g70760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr1 40947001 40982000 0 0 Deletion 34999 LOC_Os01g70770 glutathione S-transferase, putative, expressed FN3028-S Chr1 40947001 40982000 0 0 Deletion 34999 LOC_Os01g70780 WD40-like domain containing protein, putative, expressed FN3028-S Chr1 40947001 40982000 0 0 Deletion 34999 LOC_Os01g70790 SRC2 protein, putative, expressed FN3028-S Chr1 40947001 40982000 0 0 Deletion 34999 LOC_Os01g70800 mitochondrial carrier protein, putative, expressed FN3028-S Chr1 41062001 41079000 0 0 Deletion 16999 LOC_Os01g70940 potassium transporter, putative, expressed FN3028-S Chr1 41062001 41079000 0 0 Deletion 16999 LOC_Os01g70950 spermatogenesis-associated protein 20 precursor, putative, expressed FN3028-S Chr1 41062001 41079000 0 0 Deletion 16999 LOC_Os01g70960 cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed FN3028-S Chr1 41062001 41079000 0 0 Deletion 16999 LOC_Os01g71100 expressed protein FN3028-S Chr1 41147001 41176000 0 0 Deletion 28999 LOC_Os01g71106 NBS-LRR disease resistance protein, putative, expressed FN3028-S Chr1 41147001 41176000 0 0 Deletion 28999 LOC_Os01g71114 disease resistance protein RGA4, putative, expressed FN3028-S Chr1 41147001 41176000 0 0 Deletion 28999 LOC_Os01g71130 xylanase inhibitor 725OS, putative, expressed FN3028-S Chr1 41147001 41176000 0 0 Deletion 28999 LOC_Os01g71140 xylanase inhibitor, putative, expressed FN3028-S Chr1 41147001 41176000 0 0 Deletion 28999 LOC_Os01g71150 expressed protein FN3028-S Chr1 41147001 41176000 0 0 Deletion 28999 LOC_Os01g71270 eukaryotic peptide chain release factor subunit 1-1, putative, expressed FN3028-S Chr1 41240001 41294000 0 0 Deletion 53999 LOC_Os01g71280 glycerol-3-phosphate dehydrogenase, putative, expressed FN3028-S Chr1 41240001 41294000 0 0 Deletion 53999 LOC_Os01g71300 S-formylglutathione hydrolase, putative, expressed FN3028-S Chr1 41901001 41924000 0 0 Deletion 22999 LOC_Os01g72280 tetratricopeptide repeat containing protein, putative, expressed FN3028-S Chr1 41901001 41924000 0 0 Deletion 22999 LOC_Os01g72290 expressed protein FN3028-S Chr1 41901001 41924000 0 0 Deletion 22999 LOC_Os01g72300 Cupin domain containing protein, expressed FN3028-S Chr1 41901001 41924000 0 0 Deletion 22999 LOC_Os01g72310 OsFBO7 - F-box and other domain containing protein, expressed FN3028-S Chr1 41901001 41924000 0 0 Deletion 22999 LOC_Os01g72340 beta-galactosidase, putative, expressed FN3028-S Chr1 41976001 41999000 0 0 Deletion 22999 LOC_Os01g72380 expressed protein FN3028-S Chr1 41976001 41999000 0 0 Deletion 22999 LOC_Os01g72390 NBS type disease resistance protein, putative, expressed FN3028-S Chr1 41976001 41999000 0 0 Deletion 22999 LOC_Os01g72400 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr1 41976001 41999000 0 0 Deletion 22999 LOC_Os01g72410 Leucine Rich Repeat family protein, expressed FN3028-S Chr1 41976001 41999000 0 0 Deletion 22999 LOC_Os01g72510 eukaryotic aspartyl protease domain containing protein, expressed FN3028-S Chr1 42057001 42111000 0 0 Deletion 53999 LOC_Os01g72520 phosphoesterase family protein, putative, expressed FN3028-S Chr1 42057001 42111000 0 0 Deletion 53999 LOC_Os01g72530 OsCML31 - Calmodulin-related calcium sensor protein, expressed FN3028-S Chr1 42057001 42111000 0 0 Deletion 53999 LOC_Os01g72540 OsCML23 - Calmodulin-related calcium sensor protein, expressed FN3028-S Chr1 42057001 42111000 0 0 Deletion 53999 LOC_Os01g72550 OsCML19 - Calmodulin-related calcium sensor protein, expressed FN3028-S Chr1 42057001 42111000 0 0 Deletion 53999 LOC_Os01g72560 expressed protein FN3028-S Chr1 42057001 42111000 0 0 Deletion 53999 LOC_Os01g72570 expressed protein FN3028-S Chr1 42057001 42111000 0 0 Deletion 53999 LOC_Os01g72590 expressed protein FN3028-S Chr1 42057001 42111000 0 0 Deletion 53999 LOC_Os01g72740 cytochrome P450, putative, expressed FN3028-S Chr1 42206001 42239000 0 0 Deletion 32999 LOC_Os01g72760 cytochrome P450, putative, expressed FN3028-S Chr1 42206001 42239000 0 0 Deletion 32999 LOC_Os01g72780 expressed protein FN3028-S Chr1 42206001 42239000 0 0 Deletion 32999 LOC_Os01g72790 cyclin-dependent kinase, putative, expressed FN3028-S Chr1 42206001 42239000 0 0 Deletion 32999 LOC_Os01g72800 signal recognition particle receptor, putative, expressed FN3028-S Chr1 42206001 42239000 0 0 Deletion 32999 LOC_Os01g72810 secreted glycoprotein, putative, expressed FN3028-S Chr1 42206001 42239000 0 0 Deletion 32999 LOC_Os01g72860 MAC/Perforin domain containing protein, putative, expressed FN3028-S Chr1 42262001 42285000 0 0 Deletion 22999 LOC_Os01g72870 BAS1, putative, expressed FN3028-S Chr1 42262001 42285000 0 0 Deletion 22999 LOC_Os01g72880 DNA mismatch repair protein Mlh1, putative, expressed FN3028-S Chr1 42262001 42285000 0 0 Deletion 22999 LOC_Os01g72890 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr1 42262001 42285000 0 0 Deletion 22999 LOC_Os01g72900 abscisic stress-ripening, putative, expressed FN3028-S Chr1 42262001 42285000 0 0 Deletion 22999 LOC_Os01g72910 abscisic stress-ripening, putative, expressed FN3028-S Chr1 42262001 42285000 0 0 Deletion 22999 LOC_Os02g02660 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 4256001 4270000 0 0 Deletion 13999 LOC_Os01g08570 2-oxoglutarate and iron-dependent oxygenase domain-containing protein2, putative, expressed FN3028-S Chr1 4256001 4270000 0 0 Deletion 13999 LOC_Os01g09252 WD domain, G-beta repeat domain containing protein, expressed FN3028-S Chr1 4693001 4708000 0 0 Deletion 14999 LOC_Os01g09260 cytokinin dehydrogenase precursor, putative, expressed FN3028-S Chr1 4693001 4708000 0 0 Deletion 14999 LOC_Os01g09970 expressed protein FN3028-S Chr1 5186001 5203000 0 0 Deletion 16999 LOC_Os01g09970 expressed protein FN3028-S Chr1 5186001 5203000 0 0 Deletion 16999 LOC_Os01g09980 expressed protein FN3028-S Chr1 5186001 5203000 0 0 Deletion 16999 LOC_Os01g09990 helix-loop-helix DNA-binding domain containing protein, expressed FN3028-S Chr1 5728001 5758000 0 0 Deletion 29999 LOC_Os01g10710 receptor-like protein kinase, putative, expressed FN3028-S Chr1 5728001 5758000 0 0 Deletion 29999 LOC_Os01g10720 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 5728001 5758000 0 0 Deletion 29999 LOC_Os01g10740 expressed protein FN3028-S Chr1 5728001 5758000 0 0 Deletion 29999 LOC_Os01g10750 expressed protein FN3028-S Chr1 5728001 5758000 0 0 Deletion 29999 LOC_Os01g10760 expressed protein FN3028-S Chr1 5728001 5758000 0 0 Deletion 29999 LOC_Os01g10770 expressed protein FN3028-S Chr1 5728001 5758000 0 0 Deletion 29999 LOC_Os01g11360 expressed protein FN3028-S Chr1 6106001 6121000 0 0 Deletion 14999 LOC_Os01g11370 ATP-dependent RNA helicase, putative, expressed FN3028-S Chr1 6106001 6121000 0 0 Deletion 14999 LOC_Os01g11710 GDSL-like lipase/acylhydrolase, putative, expressed FN3028-S Chr1 6317001 6340000 0 0 Deletion 22999 LOC_Os01g11720 transposable element protein, putative, containing Pfam profile: PF03004, Transposase_24, expressed FN3028-S Chr1 6317001 6340000 0 0 Deletion 22999 LOC_Os01g12390 inactive receptor kinase At2g26730 precursor, putative, expressed FN3028-S Chr1 6767001 6797000 0 0 Deletion 29999 LOC_Os01g12400 S-locus lectin protein kinase family protein, putative, expressed FN3028-S Chr1 6767001 6797000 0 0 Deletion 29999 LOC_Os01g12410 receptor-like protein kinase, putative, expressed FN3028-S Chr1 6767001 6797000 0 0 Deletion 29999 LOC_Os01g12420 receptor-like protein kinase, putative, expressed FN3028-S Chr1 6767001 6797000 0 0 Deletion 29999 LOC_Os01g12430 receptor-like protein kinase, putative, expressed FN3028-S Chr1 6767001 6797000 0 0 Deletion 29999 LOC_Os01g12740 cytochrome P450, putative, expressed FN3028-S Chr1 7048001 7070000 0 0 Deletion 21999 LOC_Os01g12750 cytochrome P450, putative, expressed FN3028-S Chr1 7048001 7070000 0 0 Deletion 21999 LOC_Os01g12760 cytochrome P450, putative, expressed FN3028-S Chr1 7048001 7070000 0 0 Deletion 21999 LOC_Os01g12860 MYB family transcription factor, putative, expressed FN3028-S Chr1 7123001 7145000 0 0 Deletion 21999 LOC_Os01g12870 eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed FN3028-S Chr1 7123001 7145000 0 0 Deletion 21999 LOC_Os01g12880 VHS and GAT domain containing protein, expressed FN3028-S Chr1 7123001 7145000 0 0 Deletion 21999 LOC_Os01g14120 expressed protein FN3028-S Chr1 7923001 7973000 0 0 Deletion 49999 LOC_Os01g14130 expressed protein FN3028-S Chr1 7923001 7973000 0 0 Deletion 49999 LOC_Os01g14140 X8 domain containing protein, expressed FN3028-S Chr1 7923001 7973000 0 0 Deletion 49999 LOC_Os01g14160 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr1 7923001 7973000 0 0 Deletion 49999 LOC_Os01g14170 expressed protein FN3028-S Chr1 7923001 7973000 0 0 Deletion 49999 LOC_Os01g14180 expressed protein FN3028-S Chr1 7923001 7973000 0 0 Deletion 49999 LOC_Os01g14190 transposon protein, putative, unclassified, expressed FN3028-S Chr1 7923001 7973000 0 0 Deletion 49999 LOC_Os01g14200 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr1 7923001 7973000 0 0 Deletion 49999 LOC_Os01g14210 expressed protein FN3028-S Chr1 7923001 7973000 0 0 Deletion 49999 LOC_Os01g14220 expressed protein FN3028-S Chr1 7923001 7973000 0 0 Deletion 49999 LOC_Os01g14580 dehydrogenase, putative, expressed FN3028-S Chr1 8170001 8182000 0 0 Deletion 11999 LOC_Os01g14580 dehydrogenase, putative, expressed FN3028-S Chr1 8170001 8182000 0 0 Deletion 11999 LOC_Os01g14590 pathogen-related protein, putative, expressed FN3028-S Chr1 8170001 8182000 0 0 Deletion 11999 LOC_Os01g14610 PSF2 - Putative GINS complex subunit, expressed FN3028-S Chr1 8170001 8182000 0 0 Deletion 11999 LOC_Os01g14810 5-nucleotidase domain-containing protein, putative, expressed FN3028-S Chr1 8183534 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3028-S Chr1 8276001 8293000 0 0 Deletion 16999 LOC_Os01g14820 expressed protein FN3028-S Chr1 8276001 8293000 0 0 Deletion 16999 LOC_Os01g14830 ribosomal protein L3, putative, expressed FN3028-S Chr1 8276001 8293000 0 0 Deletion 16999 LOC_Os01g16270 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr1 9217001 9244000 0 0 Deletion 26999 LOC_Os01g16280 expressed protein FN3028-S Chr1 9217001 9244000 0 0 Deletion 26999 LOC_Os01g16290 DNA gyrase subunit B, chloroplast/mitochondrial precursor, putative, expressed FN3028-S Chr1 9217001 9244000 0 0 Deletion 26999 LOC_Os01g16300 hypothetical protein FN3028-S Chr1 9217001 9244000 0 0 Deletion 26999 LOC_Os01g18250 subtilase, putative, expressed FN3028-S Chr10 10118001 10159000 0 0 Deletion 40999 LOC_Os10g20170 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 10118001 10159000 0 0 Deletion 40999 LOC_Os10g20180 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 10118001 10159000 0 0 Deletion 40999 LOC_Os10g20190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 10118001 10159000 0 0 Deletion 40999 LOC_Os10g20200 retrotransposon protein, putative, unclassified FN3028-S Chr10 10118001 10159000 0 0 Deletion 40999 LOC_Os10g20210 retrotransposon protein, putative, unclassified FN3028-S Chr10 10118001 10159000 0 0 Deletion 40999 LOC_Os10g20220 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 10118001 10159000 0 0 Deletion 40999 LOC_Os10g20794 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr10 1014001 1039000 0 0 Deletion 24999 LOC_Os10g02644 hypothetical protein FN3028-S Chr10 1014001 1039000 0 0 Deletion 24999 LOC_Os10g02650 PPR repeat containing protein, expressed FN3028-S Chr10 1014001 1039000 0 0 Deletion 24999 LOC_Os10g03240 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr10 10142508 10142508 0 0 Insertion 1 upstream_gene_variant HET FN3028-S Chr10 1040328 1040329 0 0 Deletion 1 upstream_gene_variant HET FN3028-S Chr10 10547001 10581000 0 0 Deletion 33999 LOC_Os10g20810 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr10 10547001 10581000 0 0 Deletion 33999 LOC_Os10g20820 hypothetical protein FN3028-S Chr10 10547001 10581000 0 0 Deletion 33999 LOC_Os10g20830 LTPL133 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3028-S Chr10 10547001 10581000 0 0 Deletion 33999 LOC_Os10g20840 LTPL134 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed FN3028-S Chr10 10547001 10581000 0 0 Deletion 33999 LOC_Os10g20860 protease inhibitor/seed storage/LTP family, putative, expressed FN3028-S Chr10 10547001 10581000 0 0 Deletion 33999 LOC_Os10g20870 expressed protein FN3028-S Chr10 10547001 10581000 0 0 Deletion 33999 LOC_Os10g20880 LTPL136 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed FN3028-S Chr10 10547001 10581000 0 0 Deletion 33999 LOC_Os10g21130 expressed protein FN3028-S Chr10 10731001 10768000 0 0 Deletion 36999 LOC_Os10g21140 hypothetical protein FN3028-S Chr10 10731001 10768000 0 0 Deletion 36999 LOC_Os10g21620 expressed protein FN3028-S Chr10 11065001 11105000 0 0 Deletion 39999 LOC_Os10g21630 hypothetical protein FN3028-S Chr10 11065001 11105000 0 0 Deletion 39999 LOC_Os10g21640 expressed protein FN3028-S Chr10 11065001 11105000 0 0 Deletion 39999 LOC_Os10g21660 FAD binding protein, putative, expressed FN3028-S Chr10 11065001 11105000 0 0 Deletion 39999 LOC_Os10g21720 expressed protein FN3028-S Chr10 11132001 11183000 0 0 Deletion 50999 LOC_Os10g21730 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr10 11132001 11183000 0 0 Deletion 50999 LOC_Os10g21740 expressed protein FN3028-S Chr10 11132001 11183000 0 0 Deletion 50999 LOC_Os10g21760 retrotransposon protein, putative, unclassified FN3028-S Chr10 11132001 11183000 0 0 Deletion 50999 LOC_Os10g21770 expressed protein FN3028-S Chr10 11132001 11183000 0 0 Deletion 50999 LOC_Os10g21780 hypothetical protein FN3028-S Chr10 11132001 11183000 0 0 Deletion 50999 LOC_Os10g21784 expressed protein FN3028-S Chr10 11132001 11183000 0 0 Deletion 50999 LOC_Os10g21830 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 11215001 11248000 0 0 Deletion 32999 LOC_Os10g21840 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 11215001 11248000 0 0 Deletion 32999 LOC_Os10g21850 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 11215001 11248000 0 0 Deletion 32999 LOC_Os10g21860 expressed protein FN3028-S Chr10 11215001 11248000 0 0 Deletion 32999 LOC_Os10g21870 expressed protein FN3028-S Chr10 11215001 11248000 0 0 Deletion 32999 LOC_Os10g21880 expressed protein FN3028-S Chr10 11215001 11248000 0 0 Deletion 32999 LOC_Os10g21920 PPR repeat containing protein, expressed FN3028-S Chr10 11286001 11307000 0 0 Deletion 20999 LOC_Os10g21930 OsFBK21 - F-box domain and kelch repeat containing protein, expressed FN3028-S Chr10 11286001 11307000 0 0 Deletion 20999 LOC_Os10g21940 expressed protein FN3028-S Chr10 11286001 11307000 0 0 Deletion 20999 LOC_Os10g22550 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 11687001 11706000 0 0 Deletion 18999 LOC_Os10g22560 peptide transporter PTR2, putative, expressed FN3028-S Chr10 11687001 11706000 0 0 Deletion 18999 LOC_Os10g22570 cellulase, putative, expressed FN3028-S Chr10 11687001 11706000 0 0 Deletion 18999 LOC_Os10g22800 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 11847001 11870000 0 0 Deletion 22999 LOC_Os10g22810 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 11847001 11870000 0 0 Deletion 22999 LOC_Os10g22820 expressed protein FN3028-S Chr10 11847001 11870000 0 0 Deletion 22999 LOC_Os10g22830 expressed protein FN3028-S Chr10 11847001 11870000 0 0 Deletion 22999 LOC_Os10g22840 retrotransposon protein, putative, unclassified FN3028-S Chr10 11847001 11870000 0 0 Deletion 22999 LOC_Os10g23100 ras-related protein, putative, expressed FN3028-S Chr10 12049001 12072000 0 0 Deletion 22999 LOC_Os10g23110 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 12049001 12072000 0 0 Deletion 22999 LOC_Os10g23120 pyridoxamine 5'-phosphate oxidase family protein, putative, expressed FN3028-S Chr10 12049001 12072000 0 0 Deletion 22999 LOC_Os10g23250 expressed protein FN3028-S Chr10 12131001 12191000 0 0 Deletion 59999 LOC_Os10g23260 hypothetical protein FN3028-S Chr10 12131001 12191000 0 0 Deletion 59999 LOC_Os10g23270 transposon protein, putative, unclassified FN3028-S Chr10 12131001 12191000 0 0 Deletion 59999 LOC_Os10g23280 expressed protein FN3028-S Chr10 12131001 12191000 0 0 Deletion 59999 LOC_Os10g23290 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr10 12131001 12191000 0 0 Deletion 59999 LOC_Os10g23300 hypothetical protein FN3028-S Chr10 12131001 12191000 0 0 Deletion 59999 LOC_Os10g23310 transferase family protein, putative, expressed FN3028-S Chr10 12131001 12191000 0 0 Deletion 59999 LOC_Os10g23320 expressed protein FN3028-S Chr10 12400001 12415000 0 0 Deletion 14999 LOC_Os10g24220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 12400001 12415000 0 0 Deletion 14999 LOC_Os10g24230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 12400001 12415000 0 0 Deletion 14999 LOC_Os10g24690 expressed protein FN3028-S Chr10 12683001 12713000 0 0 Deletion 29999 LOC_Os10g24700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 12683001 12713000 0 0 Deletion 29999 LOC_Os10g24710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 12683001 12713000 0 0 Deletion 29999 LOC_Os10g24740 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr10 12730001 12752000 0 0 Deletion 21999 LOC_Os10g24750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 12730001 12752000 0 0 Deletion 21999 LOC_Os10g24760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 12730001 12752000 0 0 Deletion 21999 LOC_Os10g24770 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 12730001 12752000 0 0 Deletion 21999 LOC_Os10g24780 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr10 12730001 12752000 0 0 Deletion 21999 LOC_Os10g24790 transposon protein, putative, unclassified, expressed FN3028-S Chr10 12730001 12752000 0 0 Deletion 21999 LOC_Os10g25560 XI-I, putative, expressed FN3028-S Chr10 13236001 13252000 0 0 Deletion 15999 LOC_Os10g25565 myosin-Va, putative, expressed FN3028-S Chr10 13236001 13252000 0 0 Deletion 15999 LOC_Os10g25740 cellulose synthase, putative, expressed FN3028-S Chr10 13332001 13349000 0 0 Deletion 16999 LOC_Os10g25750 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr10 13332001 13349000 0 0 Deletion 16999 LOC_Os10g25760 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr10 13332001 13349000 0 0 Deletion 16999 LOC_Os10g26490 expressed protein FN3028-S Chr10 1363001 1449000 0 0 Deletion 85999 LOC_Os10g03250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 1363001 1449000 0 0 Deletion 85999 LOC_Os10g03260 expressed protein FN3028-S Chr10 1363001 1449000 0 0 Deletion 85999 LOC_Os10g03270 hypothetical protein FN3028-S Chr10 1363001 1449000 0 0 Deletion 85999 LOC_Os10g03280 expressed protein FN3028-S Chr10 1363001 1449000 0 0 Deletion 85999 LOC_Os10g03290 CYP94D2, putative FN3028-S Chr10 1363001 1449000 0 0 Deletion 85999 LOC_Os10g03300 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr10 1363001 1449000 0 0 Deletion 85999 LOC_Os10g03310 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr10 1363001 1449000 0 0 Deletion 85999 LOC_Os10g03320 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed FN3028-S Chr10 1363001 1449000 0 0 Deletion 85999 LOC_Os10g03330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr10 1363001 1449000 0 0 Deletion 85999 LOC_Os10g03340 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr10 1363001 1449000 0 0 Deletion 85999 LOC_Os10g03350 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr10 1363001 1449000 0 0 Deletion 85999 LOC_Os10g03360 transferase family protein, putative, expressed FN3028-S Chr10 1363001 1449000 0 0 Deletion 85999 LOC_Os10g03370 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr10 1363001 1449000 0 0 Deletion 85999 LOC_Os10g03380 hypothetical protein FN3028-S Chr10 1363001 1449000 0 0 Deletion 85999 LOC_Os10g03390 transferase family protein, putative, expressed FN3028-S Chr10 1363001 1449000 0 0 Deletion 85999 LOC_Os10g03400 phosphatidylinositol transfer, putative, expressed FN3028-S Chr10 1363001 1449000 0 0 Deletion 85999 LOC_Os10g03820 expressed protein FN3028-S Chr10 14779001 14797000 0 0 Deletion 17999 LOC_Os10g28420 IQ calmodulin-binding motif family protein, putative, expressed FN3028-S Chr10 14779001 14797000 0 0 Deletion 17999 LOC_Os10g28430 retrotransposon protein, putative, unclassified FN3028-S Chr10 14779001 14797000 0 0 Deletion 17999 LOC_Os10g31460 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 15529452 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3028-S Chr10 16490001 16536000 0 0 Deletion 45999 LOC_Os10g31490 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 16490001 16536000 0 0 Deletion 45999 LOC_Os10g31500 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 16490001 16536000 0 0 Deletion 45999 LOC_Os10g31510 glycine-rich cell wall structural protein 2 precursor, putative, expressed FN3028-S Chr10 16490001 16536000 0 0 Deletion 45999 LOC_Os10g31520 ribosomal RNA assembly protein mis3, putative, expressed FN3028-S Chr10 16490001 16536000 0 0 Deletion 45999 LOC_Os10g31530 glycine-rich cell wall protein, putative, expressed FN3028-S Chr10 16490001 16536000 0 0 Deletion 45999 LOC_Os10g31540 glycine-rich cell wall structural protein 2 precursor, putative, expressed FN3028-S Chr10 16490001 16536000 0 0 Deletion 45999 LOC_Os10g31550 hypothetical protein FN3028-S Chr10 16490001 16536000 0 0 Deletion 45999 LOC_Os10g31560 glycine-rich cell wall structural protein 2 precursor, putative, expressed FN3028-S Chr10 16490001 16536000 0 0 Deletion 45999 LOC_Os10g31970 SNF2 family N-terminal domain containing protein, expressed FN3028-S Chr10 16792001 16810000 0 0 Deletion 17999 LOC_Os10g31980 retrotransposon protein, putative, LINE subclass, expressed FN3028-S Chr10 16792001 16810000 0 0 Deletion 17999 LOC_Os10g31990 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 16792001 16810000 0 0 Deletion 17999 LOC_Os10g33210 peptide transporter PTR3-A, putative, expressed FN3028-S Chr10 1723001 1738000 0 0 Deletion 14999 LOC_Os10g03830 expressed protein FN3028-S Chr10 1723001 1738000 0 0 Deletion 14999 LOC_Os10g04690 expressed protein FN3028-S Chr10 17417001 17452000 0 0 Deletion 34999 LOC_Os10g33220 transposon protein, putative, unclassified, expressed FN3028-S Chr10 17417001 17452000 0 0 Deletion 34999 LOC_Os10g33230 RNA recognition motif containing protein, putative, expressed FN3028-S Chr10 17417001 17452000 0 0 Deletion 34999 LOC_Os10g33240 expressed protein FN3028-S Chr10 17417001 17452000 0 0 Deletion 34999 LOC_Os10g33250 WAX2, putative, expressed FN3028-S Chr10 17417001 17452000 0 0 Deletion 34999 LOC_Os10g33740 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr10 18455001 18509000 0 0 Deletion 53999 LOC_Os10g34640 retrotransposon protein, putative, unclassified FN3028-S Chr10 18455001 18509000 0 0 Deletion 53999 LOC_Os10g34650 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 18455001 18509000 0 0 Deletion 53999 LOC_Os10g34660 expressed protein FN3028-S Chr10 18455001 18509000 0 0 Deletion 53999 LOC_Os10g34670 prefoldin, putative, expressed FN3028-S Chr10 18455001 18509000 0 0 Deletion 53999 LOC_Os10g34680 vacuolar protein sorting-associated protein 52, putative, expressed FN3028-S Chr10 18455001 18509000 0 0 Deletion 53999 LOC_Os10g34694 hypothetical protein FN3028-S Chr10 18455001 18509000 0 0 Deletion 53999 LOC_Os10g34700 expressed protein FN3028-S Chr10 18455001 18509000 0 0 Deletion 53999 LOC_Os10g37920 MATE efflux family protein, putative, expressed FN3028-S Chr10 18986169 18986169 0 0 Insertion 1 upstream_gene_variant HET FN3028-S Chr10 20300001 20329000 0 0 Deletion 28999 LOC_Os10g37940 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 20300001 20329000 0 0 Deletion 28999 LOC_Os10g37950 conserved hypothetical protein FN3028-S Chr10 20300001 20329000 0 0 Deletion 28999 LOC_Os10g40410 expressed protein FN3028-S Chr10 21652001 21667000 0 0 Deletion 14999 LOC_Os10g40420 LTPL138 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3028-S Chr10 21652001 21667000 0 0 Deletion 14999 LOC_Os10g40430 LTPL139 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3028-S Chr10 21652001 21667000 0 0 Deletion 14999 LOC_Os10g40440 LTPL140 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3028-S Chr10 21652001 21667000 0 0 Deletion 14999 LOC_Os10g40450 expressed protein FN3028-S Chr10 21652001 21667000 0 0 Deletion 14999 LOC_Os11g02950 auxin efflux carrier component, putative, expressed FN3028-S Chr10 2239001 2277000 0 0 Deletion 37999 LOC_Os10g04700 OsFBX361 - F-box domain containing protein, expressed FN3028-S Chr10 2239001 2277000 0 0 Deletion 37999 LOC_Os10g04710 expressed protein FN3028-S Chr10 2239001 2277000 0 0 Deletion 37999 LOC_Os10g04720 TKL_IRAK_DUF26-la.5 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3028-S Chr10 2239001 2277000 0 0 Deletion 37999 LOC_Os10g04730 TKL_IRAK_DUF26-la.6 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3028-S Chr10 2239001 2277000 0 0 Deletion 37999 LOC_Os10g04740 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 2239001 2277000 0 0 Deletion 37999 LOC_Os10g04770 expressed protein FN3028-S Chr10 22612322 22612322 0 0 Insertion 1 upstream_gene_variant HET FN3028-S Chr10 2291001 2308000 0 0 Deletion 16999 LOC_Os10g04780 OsFBX363 - F-box domain containing protein, expressed FN3028-S Chr10 2291001 2308000 0 0 Deletion 16999 LOC_Os10g04930 expressed protein FN3028-S Chr10 2725001 2754000 0 0 Deletion 28999 LOC_Os10g05530 OsFBX372 - F-box domain containing protein, expressed FN3028-S Chr10 2725001 2754000 0 0 Deletion 28999 LOC_Os10g05540 OsFBX373 - F-box domain containing protein, expressed FN3028-S Chr10 2725001 2754000 0 0 Deletion 28999 LOC_Os10g05550 expressed protein FN3028-S Chr10 2725001 2754000 0 0 Deletion 28999 LOC_Os10g06030 OsWAK103 - OsWAK receptor-like protein kinase, expressed FN3028-S Chr10 3061001 3103000 0 0 Deletion 41999 LOC_Os10g06050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 3061001 3103000 0 0 Deletion 41999 LOC_Os10g06070 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 3061001 3103000 0 0 Deletion 41999 LOC_Os10g06080 hypothetical protein FN3028-S Chr10 3061001 3103000 0 0 Deletion 41999 LOC_Os10g06090 OsWAK104 - OsWAK receptor-like protein kinase, expressed FN3028-S Chr10 3061001 3103000 0 0 Deletion 41999 LOC_Os10g06340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 3270001 3303000 0 0 Deletion 32999 LOC_Os10g06350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 3270001 3303000 0 0 Deletion 32999 LOC_Os10g06360 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr10 3270001 3303000 0 0 Deletion 32999 LOC_Os10g06370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 3270001 3303000 0 0 Deletion 32999 LOC_Os10g06380 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 3270001 3303000 0 0 Deletion 32999 LOC_Os10g06390 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr10 3270001 3303000 0 0 Deletion 32999 LOC_Os10g06400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 3270001 3303000 0 0 Deletion 32999 LOC_Os10g06410 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 3270001 3303000 0 0 Deletion 32999 LOC_Os10g06420 retrotransposon protein, putative, unclassified FN3028-S Chr10 3270001 3303000 0 0 Deletion 32999 LOC_Os10g06430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 3640001 3660000 0 0 Deletion 19999 LOC_Os10g07000 hypothetical protein FN3028-S Chr10 3640001 3660000 0 0 Deletion 19999 LOC_Os10g07004 expressed protein FN3028-S Chr10 3640001 3660000 0 0 Deletion 19999 LOC_Os10g07010 3-ketoacyl-CoA synthase, putative, expressed FN3028-S Chr10 3640001 3660000 0 0 Deletion 19999 LOC_Os10g07030 expressed protein FN3028-S Chr10 3676001 3712000 0 0 Deletion 35999 LOC_Os10g07040 chalcone synthase, putative, expressed FN3028-S Chr10 3676001 3712000 0 0 Deletion 35999 LOC_Os10g07050 expressed protein FN3028-S Chr10 3676001 3712000 0 0 Deletion 35999 LOC_Os10g07248 transposon protein, putative, unclassified, expressed FN3028-S Chr10 3686553 3686556 0 0 Deletion 3 upstream_gene_variant HET FN3028-S Chr10 3817001 3839000 0 0 Deletion 21999 LOC_Os10g07270 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed FN3028-S Chr10 3817001 3839000 0 0 Deletion 21999 LOC_Os10g07380 expressed protein FN3028-S Chr10 3894001 3921000 0 0 Deletion 26999 LOC_Os10g07390 hypothetical protein FN3028-S Chr10 3894001 3921000 0 0 Deletion 26999 LOC_Os10g07400 disease resistance RPP13-like protein 1, putative, expressed FN3028-S Chr10 3894001 3921000 0 0 Deletion 26999 LOC_Os10g07410 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 3894001 3921000 0 0 Deletion 26999 LOC_Os10g07998 nodulin, putative, expressed FN3028-S Chr10 4294001 4430000 0 0 Deletion 135999 LOC_Os10g08002 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr10 4294001 4430000 0 0 Deletion 135999 LOC_Os10g08006 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr10 4294001 4430000 0 0 Deletion 135999 LOC_Os10g08010 expressed protein FN3028-S Chr10 4294001 4430000 0 0 Deletion 135999 LOC_Os10g08011 expressed protein FN3028-S Chr10 4294001 4430000 0 0 Deletion 135999 LOC_Os10g08014 white-brown complex homolog protein 11, putative, expressed FN3028-S Chr10 4294001 4430000 0 0 Deletion 135999 LOC_Os10g08018 expressed protein FN3028-S Chr10 4294001 4430000 0 0 Deletion 135999 LOC_Os10g08022 fructose-bisphospate aldolase isozyme, putative, expressed FN3028-S Chr10 4294001 4430000 0 0 Deletion 135999 LOC_Os10g08026 lecithin:cholesterol acyltransferase, putative, expressed FN3028-S Chr10 4294001 4430000 0 0 Deletion 135999 LOC_Os10g08030 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr10 4294001 4430000 0 0 Deletion 135999 LOC_Os10g08040 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 4294001 4430000 0 0 Deletion 135999 LOC_Os10g08050 lecithine cholesterol acyltransferase, putative, expressed FN3028-S Chr10 4294001 4430000 0 0 Deletion 135999 LOC_Os10g08060 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr10 4294001 4430000 0 0 Deletion 135999 LOC_Os10g08070 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 4294001 4430000 0 0 Deletion 135999 LOC_Os10g08080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 4294001 4430000 0 0 Deletion 135999 LOC_Os10g08090 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr10 4294001 4430000 0 0 Deletion 135999 LOC_Os10g08100 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 4294001 4430000 0 0 Deletion 135999 LOC_Os10g08110 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr10 4294001 4430000 0 0 Deletion 135999 LOC_Os10g08120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 4294001 4430000 0 0 Deletion 135999 LOC_Os10g08130 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 4294001 4430000 0 0 Deletion 135999 LOC_Os10g08140 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr10 4294001 4430000 0 0 Deletion 135999 LOC_Os10g08150 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr10 4294001 4430000 0 0 Deletion 135999 LOC_Os10g08160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr10 4294001 4430000 0 0 Deletion 135999 LOC_Os10g08170 expressed protein FN3028-S Chr10 4294001 4430000 0 0 Deletion 135999 LOC_Os10g08180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 4457001 4483000 0 0 Deletion 25999 LOC_Os10g08260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr10 4457001 4483000 0 0 Deletion 25999 LOC_Os10g08280 DNA binding protein, putative, expressed FN3028-S Chr10 4457001 4483000 0 0 Deletion 25999 LOC_Os10g08290 expressed protein FN3028-S Chr10 4457001 4483000 0 0 Deletion 25999 LOC_Os10g08410 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 4566001 4604000 0 0 Deletion 37999 LOC_Os10g08420 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 4566001 4604000 0 0 Deletion 37999 LOC_Os10g08430 hypothetical protein FN3028-S Chr10 4566001 4604000 0 0 Deletion 37999 LOC_Os10g08440 expressed protein FN3028-S Chr10 4566001 4604000 0 0 Deletion 37999 LOC_Os10g08450 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr10 4566001 4604000 0 0 Deletion 37999 LOC_Os10g08460 expressed protein FN3028-S Chr10 4566001 4604000 0 0 Deletion 37999 LOC_Os10g08474 cytochrome P450, putative, expressed FN3028-S Chr10 4566001 4604000 0 0 Deletion 37999 LOC_Os10g08530 expressed protein FN3028-S Chr10 4677001 4741000 0 0 Deletion 63999 LOC_Os10g08620 chalcone and stilbene synthases, putative, expressed FN3028-S Chr10 4677001 4741000 0 0 Deletion 63999 LOC_Os10g08630 expressed protein FN3028-S Chr10 4677001 4741000 0 0 Deletion 63999 LOC_Os10g08640 expressed protein FN3028-S Chr10 4677001 4741000 0 0 Deletion 63999 LOC_Os10g08650 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr10 4677001 4741000 0 0 Deletion 63999 LOC_Os10g08660 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr10 4677001 4741000 0 0 Deletion 63999 LOC_Os10g08670 chalcone synthase, putative, expressed FN3028-S Chr10 4677001 4741000 0 0 Deletion 63999 LOC_Os10g08680 conserved hypothetical protein FN3028-S Chr10 4677001 4741000 0 0 Deletion 63999 LOC_Os10g08690 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 4677001 4741000 0 0 Deletion 63999 LOC_Os10g08696 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr10 4677001 4741000 0 0 Deletion 63999 LOC_Os10g08702 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 4677001 4741000 0 0 Deletion 63999 LOC_Os10g08710 chalcone synthase, putative, expressed FN3028-S Chr10 4677001 4741000 0 0 Deletion 63999 LOC_Os10g08720 hypothetical protein FN3028-S Chr10 4677001 4741000 0 0 Deletion 63999 LOC_Os10g08730 expressed protein FN3028-S Chr10 4677001 4741000 0 0 Deletion 63999 LOC_Os10g08740 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr10 4916001 4933000 0 0 Deletion 16999 LOC_Os10g09100 cytochrome P450, putative, expressed FN3028-S Chr10 4916001 4933000 0 0 Deletion 16999 LOC_Os10g09110 cytochrome P450, putative, expressed FN3028-S Chr10 4916001 4933000 0 0 Deletion 16999 LOC_Os10g09860 chalcone synthase, putative, expressed FN3028-S Chr10 4934297 4934297 0 0 Insertion 2 upstream_gene_variant HET FN3028-S Chr10 518001 529000 0 0 Deletion 10999 LOC_Os10g01800 transferase family protein, putative, expressed FN3028-S Chr10 518001 529000 0 0 Deletion 10999 LOC_Os10g01810 hypothetical protein FN3028-S Chr10 518001 529000 0 0 Deletion 10999 LOC_Os10g01830 expressed protein FN3028-S Chr10 5334001 5365000 0 0 Deletion 30999 LOC_Os10g09870 HVA22, putative, expressed FN3028-S Chr10 5334001 5365000 0 0 Deletion 30999 LOC_Os10g09880 retrotransposon protein, putative, unclassified FN3028-S Chr10 5334001 5365000 0 0 Deletion 30999 LOC_Os10g09890 hypothetical protein FN3028-S Chr10 5334001 5365000 0 0 Deletion 30999 LOC_Os10g09900 transposon protein, putative, unclassified, expressed FN3028-S Chr10 5334001 5365000 0 0 Deletion 30999 LOC_Os10g10030 OsWAK111 - OsWAK receptor-like protein kinase, expressed FN3028-S Chr10 534001 554000 0 0 Deletion 19999 LOC_Os10g01840 hypothetical protein FN3028-S Chr10 534001 554000 0 0 Deletion 19999 LOC_Os10g01844 expressed protein FN3028-S Chr10 534001 554000 0 0 Deletion 19999 LOC_Os10g01850 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 534001 554000 0 0 Deletion 19999 LOC_Os10g01940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 5441001 5467000 0 0 Deletion 25999 LOC_Os10g10040 cytochrome P450, putative, expressed FN3028-S Chr10 5441001 5467000 0 0 Deletion 25999 LOC_Os10g10100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 5514001 5547000 0 0 Deletion 32999 LOC_Os10g10110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 5514001 5547000 0 0 Deletion 32999 LOC_Os10g10130 OsWAK112d - OsWAK receptor-like protein kinase, expressed FN3028-S Chr10 5514001 5547000 0 0 Deletion 32999 LOC_Os10g10244 alanyl-tRNA synthetase, putative, expressed FN3028-S Chr10 5635001 5660000 0 0 Deletion 24999 LOC_Os10g10260 expressed protein FN3028-S Chr10 5635001 5660000 0 0 Deletion 24999 LOC_Os10g10270 expressed protein FN3028-S Chr10 5635001 5660000 0 0 Deletion 24999 LOC_Os10g10280 expressed protein FN3028-S Chr10 5635001 5660000 0 0 Deletion 24999 LOC_Os10g10290 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 5635001 5660000 0 0 Deletion 24999 LOC_Os10g10300 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 5635001 5660000 0 0 Deletion 24999 LOC_Os10g10410 OsFBX377 - F-box domain containing protein, expressed FN3028-S Chr10 5718001 5734000 0 0 Deletion 15999 LOC_Os10g10420 OsFBX378 - F-box domain containing protein, expressed FN3028-S Chr10 5718001 5734000 0 0 Deletion 15999 LOC_Os10g10434 dimethyladenosine transferase, putative, expressed FN3028-S Chr10 5718001 5734000 0 0 Deletion 15999 LOC_Os10g10990 transcription initiation factor IIF, alpha subunit domain containing protein, expressed FN3028-S Chr10 5857326 5857327 0 0 Deletion 1 downstream_gene_variant HET FN3028-S Chr10 6085001 6112000 0 0 Deletion 26999 LOC_Os10g11012 expressed protein FN3028-S Chr10 6085001 6112000 0 0 Deletion 26999 LOC_Os10g11022 expressed protein FN3028-S Chr10 6085001 6112000 0 0 Deletion 26999 LOC_Os10g11034 caffeine-induced death protein 1, putative, expressed FN3028-S Chr10 6085001 6112000 0 0 Deletion 26999 LOC_Os10g11060 ACI13, putative, expressed FN3028-S Chr10 6085001 6112000 0 0 Deletion 26999 LOC_Os10g11170 expressed protein FN3028-S Chr10 6184001 6254000 0 0 Deletion 69999 LOC_Os10g11180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 6184001 6254000 0 0 Deletion 69999 LOC_Os10g11190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 6184001 6254000 0 0 Deletion 69999 LOC_Os10g11200 aminotransferase, classes I and II, domain containing protein, expressed FN3028-S Chr10 6184001 6254000 0 0 Deletion 69999 LOC_Os10g11210 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr10 6184001 6254000 0 0 Deletion 69999 LOC_Os10g11220 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr10 6184001 6254000 0 0 Deletion 69999 LOC_Os10g11230 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr10 6184001 6254000 0 0 Deletion 69999 LOC_Os10g11240 expressed protein FN3028-S Chr10 6184001 6254000 0 0 Deletion 69999 LOC_Os10g11250 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr10 6184001 6254000 0 0 Deletion 69999 LOC_Os10g11260 ubiquitin-conjugating enzyme, putative, expressed FN3028-S Chr10 6184001 6254000 0 0 Deletion 69999 LOC_Os10g11270 sulfotransferase domain containing protein, expressed FN3028-S Chr10 625903 625903 0 0 Insertion 1 intron_variant HET FN3028-S Chr10 6286001 6316000 0 0 Deletion 29999 LOC_Os10g11340 nitroreductase family protein, putative, expressed FN3028-S Chr10 6286001 6316000 0 0 Deletion 29999 LOC_Os10g11354 MATE efflux family protein, putative, expressed FN3028-S Chr10 6286001 6316000 0 0 Deletion 29999 LOC_Os10g11370 LTPL87 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed FN3028-S Chr10 6286001 6316000 0 0 Deletion 29999 LOC_Os10g11384 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr10 6597001 6617000 0 0 Deletion 19999 LOC_Os10g11910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 6597001 6617000 0 0 Deletion 19999 LOC_Os10g11920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 6597001 6617000 0 0 Deletion 19999 LOC_Os10g11930 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 6597001 6617000 0 0 Deletion 19999 LOC_Os10g12030 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 6684001 6708000 0 0 Deletion 23999 LOC_Os10g12050 expressed protein FN3028-S Chr10 6684001 6708000 0 0 Deletion 23999 LOC_Os10g12130 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 6733001 6768000 0 0 Deletion 34999 LOC_Os10g12140 transposon protein, putative, unclassified, expressed FN3028-S Chr10 6733001 6768000 0 0 Deletion 34999 LOC_Os10g12149 retrotransposon protein, putative, unclassified FN3028-S Chr10 6733001 6768000 0 0 Deletion 34999 LOC_Os10g12160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 6733001 6768000 0 0 Deletion 34999 LOC_Os10g12500 integral membrane protein DUF6 containing protein, expressed FN3028-S Chr10 6950001 6986000 0 0 Deletion 35999 LOC_Os10g12520 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr10 6950001 6986000 0 0 Deletion 35999 LOC_Os10g12530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 6950001 6986000 0 0 Deletion 35999 LOC_Os10g12539 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr10 6950001 6986000 0 0 Deletion 35999 LOC_Os10g12548 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr10 6950001 6986000 0 0 Deletion 35999 LOC_Os10g12570 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr10 6993001 7022000 0 0 Deletion 28999 LOC_Os10g12580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 6993001 7022000 0 0 Deletion 28999 LOC_Os10g12590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 6993001 7022000 0 0 Deletion 28999 LOC_Os10g12610 expressed protein FN3028-S Chr10 6993001 7022000 0 0 Deletion 28999 LOC_Os10g13370 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 7216001 7337000 0 0 Deletion 120999 LOC_Os10g13380 expressed protein FN3028-S Chr10 7216001 7337000 0 0 Deletion 120999 LOC_Os10g13390 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 7216001 7337000 0 0 Deletion 120999 LOC_Os10g13400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 7216001 7337000 0 0 Deletion 120999 LOC_Os10g13410 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 7216001 7337000 0 0 Deletion 120999 LOC_Os10g13420 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 7216001 7337000 0 0 Deletion 120999 LOC_Os10g13430 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr10 7216001 7337000 0 0 Deletion 120999 LOC_Os10g13440 monosaccharide-sensing protein 2, putative, expressed FN3028-S Chr10 7216001 7337000 0 0 Deletion 120999 LOC_Os10g13450 expressed protein FN3028-S Chr10 7216001 7337000 0 0 Deletion 120999 LOC_Os10g13460 hypothetical protein FN3028-S Chr10 7216001 7337000 0 0 Deletion 120999 LOC_Os10g13470 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 7216001 7337000 0 0 Deletion 120999 LOC_Os10g13480 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr10 7216001 7337000 0 0 Deletion 120999 LOC_Os10g13490 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 7216001 7337000 0 0 Deletion 120999 LOC_Os10g13500 expressed protein FN3028-S Chr10 7216001 7337000 0 0 Deletion 120999 LOC_Os10g13505 expressed protein FN3028-S Chr10 7216001 7337000 0 0 Deletion 120999 LOC_Os10g13510 transposable element protein, putative, containing Pfam profile: PF03108, MuDR, expressed FN3028-S Chr10 7216001 7337000 0 0 Deletion 120999 LOC_Os10g13530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 7216001 7337000 0 0 Deletion 120999 LOC_Os10g13540 hypothetical protein FN3028-S Chr10 7216001 7337000 0 0 Deletion 120999 LOC_Os10g13550 endonuclease/exonuclease/phosphatase family domain containing protein, expressed FN3028-S Chr10 7428001 7549000 0 0 Deletion 120999 LOC_Os10g13694 expressed protein FN3028-S Chr10 7428001 7549000 0 0 Deletion 120999 LOC_Os10g13700 phosphoenolpyruvate carboxykinase, putative, expressed FN3028-S Chr10 7428001 7549000 0 0 Deletion 120999 LOC_Os10g13710 retrotransposon protein, putative, unclassified FN3028-S Chr10 7428001 7549000 0 0 Deletion 120999 LOC_Os10g13730 retrotransposon, putative, centromere-specific FN3028-S Chr10 7428001 7549000 0 0 Deletion 120999 LOC_Os10g13740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 7428001 7549000 0 0 Deletion 120999 LOC_Os10g13760 transposon protein, putative, unclassified, expressed FN3028-S Chr10 7428001 7549000 0 0 Deletion 120999 LOC_Os10g13770 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 7428001 7549000 0 0 Deletion 120999 LOC_Os10g13780 retrotransposon, putative, centromere-specific FN3028-S Chr10 7428001 7549000 0 0 Deletion 120999 LOC_Os10g13790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 7428001 7549000 0 0 Deletion 120999 LOC_Os10g13800 ufm1-conjugating enzyme 1, putative, expressed FN3028-S Chr10 7428001 7549000 0 0 Deletion 120999 LOC_Os10g13810 glycosyltransferase family 43 protein, putative, expressed FN3028-S Chr10 7428001 7549000 0 0 Deletion 120999 LOC_Os10g13820 expressed protein FN3028-S Chr10 7428001 7549000 0 0 Deletion 120999 LOC_Os10g13830 pleiotropic drug resistance protein 13, putative, expressed FN3028-S Chr10 7428001 7549000 0 0 Deletion 120999 LOC_Os10g13840 expressed protein FN3028-S Chr10 7428001 7549000 0 0 Deletion 120999 LOC_Os10g13850 POEI17 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN3028-S Chr10 7428001 7549000 0 0 Deletion 120999 LOC_Os10g13870 expressed protein FN3028-S Chr10 7428001 7549000 0 0 Deletion 120999 LOC_Os10g13880 expressed protein FN3028-S Chr10 7428001 7549000 0 0 Deletion 120999 LOC_Os10g13960 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 7588001 7608000 0 0 Deletion 19999 LOC_Os10g13970 receptor-like kinase, putative, expressed FN3028-S Chr10 7588001 7608000 0 0 Deletion 19999 LOC_Os10g13980 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 7588001 7608000 0 0 Deletion 19999 LOC_Os10g13990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 7588001 7608000 0 0 Deletion 19999 LOC_Os10g15270 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 8019001 8030000 0 0 Deletion 10999 LOC_Os10g15164 expressed protein FN3028-S Chr10 8019001 8030000 0 0 Deletion 10999 LOC_Os10g15250 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 8019001 8030000 0 0 Deletion 10999 LOC_Os10g15260 retrotransposon protein, putative, unclassified FN3028-S Chr10 8486001 8508000 0 0 Deletion 21999 LOC_Os10g16960 hypothetical protein FN3028-S Chr10 8486001 8508000 0 0 Deletion 21999 LOC_Os10g16974 cytochrome P450, putative, expressed FN3028-S Chr10 8486001 8508000 0 0 Deletion 21999 LOC_Os10g16990 expressed protein FN3028-S Chr10 8486001 8508000 0 0 Deletion 21999 LOC_Os10g17860 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr10 9306001 9377000 0 0 Deletion 70999 LOC_Os10g18340 expressed protein FN3028-S Chr10 9306001 9377000 0 0 Deletion 70999 LOC_Os10g18350 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 9306001 9377000 0 0 Deletion 70999 LOC_Os10g18360 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 9306001 9377000 0 0 Deletion 70999 LOC_Os10g18364 ZOS10-03 - C2H2 zinc finger protein, expressed FN3028-S Chr10 9306001 9377000 0 0 Deletion 70999 LOC_Os10g18370 transcriptional regulator, putative, expressed FN3028-S Chr10 9306001 9377000 0 0 Deletion 70999 LOC_Os10g18380 expressed protein FN3028-S Chr10 9306001 9377000 0 0 Deletion 70999 LOC_Os10g18390 expressed protein FN3028-S Chr10 9306001 9377000 0 0 Deletion 70999 LOC_Os10g18400 beta-galactosidase precursor, putative, expressed FN3028-S Chr10 9306001 9377000 0 0 Deletion 70999 LOC_Os10g18410 expressed protein FN3028-S Chr10 9306001 9377000 0 0 Deletion 70999 LOC_Os10g18420 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr10 9306001 9377000 0 0 Deletion 70999 LOC_Os10g18430 agmatine coumaroyltransferase, putative, expressed FN3028-S Chr10 9306001 9377000 0 0 Deletion 70999 LOC_Os10g18440 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr10 9449001 9476000 0 0 Deletion 26999 LOC_Os10g18640 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr10 9449001 9476000 0 0 Deletion 26999 LOC_Os10g18650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 9449001 9476000 0 0 Deletion 26999 LOC_Os10g18660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 9449001 9476000 0 0 Deletion 26999 LOC_Os10g18700 expressed protein FN3028-S Chr10 9531001 9560000 0 0 Deletion 28999 LOC_Os10g18750 expressed protein FN3028-S Chr10 9531001 9560000 0 0 Deletion 28999 LOC_Os10g18760 dirigent, putative, expressed FN3028-S Chr10 9531001 9560000 0 0 Deletion 28999 LOC_Os10g18770 retrotransposon protein, putative, unclassified FN3028-S Chr10 9531001 9560000 0 0 Deletion 28999 LOC_Os10g18780 retrotransposon protein, putative, unclassified FN3028-S Chr10 9531001 9560000 0 0 Deletion 28999 LOC_Os10g18820 dirigent, putative, expressed FN3028-S Chr10 9580001 9603000 0 0 Deletion 22999 LOC_Os10g18830 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr10 9580001 9603000 0 0 Deletion 22999 LOC_Os10g18840 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr10 9580001 9603000 0 0 Deletion 22999 LOC_Os10g19880 alpha-1,2-fucosidase, putative, expressed FN3028-S Chr10 959001 991000 0 0 Deletion 31999 LOC_Os10g02544 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 959001 991000 0 0 Deletion 31999 LOC_Os10g02560 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr10 959001 991000 0 0 Deletion 31999 LOC_Os10g02570 retrotransposon protein, putative, unclassified FN3028-S Chr10 959001 991000 0 0 Deletion 31999 LOC_Os10g02584 GAGA-binding protein, putative, expressed FN3028-S Chr10 959001 991000 0 0 Deletion 31999 LOC_Os10g02640 expressed protein FN3028-S Chr10 9928001 9955000 0 0 Deletion 26999 LOC_Os10g19890 retrotransposon protein, putative, LINE subclass, expressed FN3028-S Chr10 9928001 9955000 0 0 Deletion 26999 LOC_Os10g19892 expressed protein FN3028-S Chr10 9928001 9955000 0 0 Deletion 26999 LOC_Os10g19894 expressed protein FN3028-S Chr10 9928001 9955000 0 0 Deletion 26999 LOC_Os10g20160 serine/threonine-protein kinase receptor precursor, putative, expressed FN3028-S Chr11 10029001 10048000 0 0 Deletion 18999 LOC_Os11g17900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 10029001 10048000 0 0 Deletion 18999 LOC_Os11g18194 cycloartenol synthase, putative, expressed FN3028-S Chr11 1019001 1053000 0 0 Deletion 33999 LOC_Os11g02950 auxin efflux carrier component, putative, expressed FN3028-S Chr11 1019001 1053000 0 0 Deletion 33999 LOC_Os11g02964 FAR1 family protein, expressed FN3028-S Chr11 1019001 1053000 0 0 Deletion 33999 LOC_Os11g02980 expressed protein FN3028-S Chr11 1019001 1053000 0 0 Deletion 33999 LOC_Os11g02990 conserved hypothetical protein FN3028-S Chr11 1019001 1053000 0 0 Deletion 33999 LOC_Os11g03000 retrotransposon protein, putative, unclassified FN3028-S Chr11 1019001 1053000 0 0 Deletion 33999 LOC_Os11g03010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 1019001 1053000 0 0 Deletion 33999 LOC_Os11g03020 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr11 10244001 10367000 0 0 Deletion 122999 LOC_Os11g18220 hypothetical protein FN3028-S Chr11 10244001 10367000 0 0 Deletion 122999 LOC_Os11g18230 expressed protein FN3028-S Chr11 10244001 10367000 0 0 Deletion 122999 LOC_Os11g18240 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 10244001 10367000 0 0 Deletion 122999 LOC_Os11g18250 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr11 10244001 10367000 0 0 Deletion 122999 LOC_Os11g18260 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr11 10244001 10367000 0 0 Deletion 122999 LOC_Os11g18270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 10244001 10367000 0 0 Deletion 122999 LOC_Os11g18280 retrotransposon protein, putative, unclassified FN3028-S Chr11 10244001 10367000 0 0 Deletion 122999 LOC_Os11g18290 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 10244001 10367000 0 0 Deletion 122999 LOC_Os11g18300 expressed protein FN3028-S Chr11 10244001 10367000 0 0 Deletion 122999 LOC_Os11g18310 cycloartenol synthase, putative FN3028-S Chr11 10244001 10367000 0 0 Deletion 122999 LOC_Os11g18320 expressed protein FN3028-S Chr11 10244001 10367000 0 0 Deletion 122999 LOC_Os11g18340 cycloartenol synthase, putative, expressed FN3028-S Chr11 10244001 10367000 0 0 Deletion 122999 LOC_Os11g18366 cycloartenol synthase, putative, expressed FN3028-S Chr11 10393001 10484000 0 0 Deletion 90999 LOC_Os11g18430 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr11 10393001 10484000 0 0 Deletion 90999 LOC_Os11g18440 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr11 10393001 10484000 0 0 Deletion 90999 LOC_Os11g18450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 10393001 10484000 0 0 Deletion 90999 LOC_Os11g18470 expressed protein FN3028-S Chr11 10393001 10484000 0 0 Deletion 90999 LOC_Os11g18480 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 10393001 10484000 0 0 Deletion 90999 LOC_Os11g18490 retrotransposon, putative, centromere-specific FN3028-S Chr11 10393001 10484000 0 0 Deletion 90999 LOC_Os11g18500 hypothetical protein FN3028-S Chr11 10393001 10484000 0 0 Deletion 90999 LOC_Os11g18510 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr11 10393001 10484000 0 0 Deletion 90999 LOC_Os11g18520 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr11 10393001 10484000 0 0 Deletion 90999 LOC_Os11g18530 hypothetical protein FN3028-S Chr11 10393001 10484000 0 0 Deletion 90999 LOC_Os11g18540 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr11 10393001 10484000 0 0 Deletion 90999 LOC_Os11g18550 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr11 10393001 10484000 0 0 Deletion 90999 LOC_Os11g18560 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr11 10393001 10484000 0 0 Deletion 90999 LOC_Os11g18570 cytochrome P450, putative, expressed FN3028-S Chr11 10393001 10484000 0 0 Deletion 90999 LOC_Os11g18660 expressed protein FN3028-S Chr11 10530001 10603000 0 0 Deletion 72999 LOC_Os11g18670 ubiquitin family protein, putative, expressed FN3028-S Chr11 10530001 10603000 0 0 Deletion 72999 LOC_Os11g18680 hypothetical protein FN3028-S Chr11 10530001 10603000 0 0 Deletion 72999 LOC_Os11g18690 glycosyl hydrolase family 3 protein, putative, expressed FN3028-S Chr11 10530001 10603000 0 0 Deletion 72999 LOC_Os11g18700 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 10530001 10603000 0 0 Deletion 72999 LOC_Os11g18710 expressed protein FN3028-S Chr11 10530001 10603000 0 0 Deletion 72999 LOC_Os11g18720 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 10530001 10603000 0 0 Deletion 72999 LOC_Os11g18780 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 10658001 10698000 0 0 Deletion 39999 LOC_Os11g18790 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 10658001 10698000 0 0 Deletion 39999 LOC_Os11g18800 retrotransposon protein, putative, unclassified FN3028-S Chr11 10658001 10698000 0 0 Deletion 39999 LOC_Os11g18810 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 10658001 10698000 0 0 Deletion 39999 LOC_Os11g18820 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 10658001 10698000 0 0 Deletion 39999 LOC_Os11g18830 survival motor neuron containing protein, expressed FN3028-S Chr11 11072001 11096000 0 0 Deletion 23999 LOC_Os11g19610 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 11302001 11332000 0 0 Deletion 29999 LOC_Os11g19610 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 11302001 11332000 0 0 Deletion 29999 LOC_Os11g19620 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 11302001 11332000 0 0 Deletion 29999 LOC_Os11g19630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 11302001 11332000 0 0 Deletion 29999 LOC_Os11g19640 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr11 11302001 11332000 0 0 Deletion 29999 LOC_Os11g19650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 11302001 11332000 0 0 Deletion 29999 LOC_Os11g19660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 11302001 11332000 0 0 Deletion 29999 LOC_Os11g19670 retrotransposon protein, putative, unclassified FN3028-S Chr11 11302001 11332000 0 0 Deletion 29999 LOC_Os11g19680 transposon protein, putative, unclassified, expressed FN3028-S Chr11 11421001 11434000 0 0 Deletion 12999 LOC_Os11g19830 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 11421001 11434000 0 0 Deletion 12999 LOC_Os11g19840 O-methyltransferase, putative, expressed FN3028-S Chr11 11421001 11434000 0 0 Deletion 12999 LOC_Os11g19950 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 11481001 11537000 0 0 Deletion 55999 LOC_Os11g19960 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 11481001 11537000 0 0 Deletion 55999 LOC_Os11g19970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 11481001 11537000 0 0 Deletion 55999 LOC_Os11g19980 hypothetical protein FN3028-S Chr11 11481001 11537000 0 0 Deletion 55999 LOC_Os11g19990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 11481001 11537000 0 0 Deletion 55999 LOC_Os11g20000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 11481001 11537000 0 0 Deletion 55999 LOC_Os11g20010 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 11481001 11537000 0 0 Deletion 55999 LOC_Os11g20020 expressed protein FN3028-S Chr11 11481001 11537000 0 0 Deletion 55999 LOC_Os11g20030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 11481001 11537000 0 0 Deletion 55999 LOC_Os11g22420 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr11 12930001 12961000 0 0 Deletion 30999 LOC_Os11g22510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 12930001 12961000 0 0 Deletion 30999 LOC_Os11g22530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 12930001 12961000 0 0 Deletion 30999 LOC_Os11g22540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 12930001 12961000 0 0 Deletion 30999 LOC_Os11g22820 retrotransposon protein, putative, unclassified FN3028-S Chr11 13128001 13140000 0 0 Deletion 11999 LOC_Os11g22830 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 13128001 13140000 0 0 Deletion 11999 LOC_Os11g22840 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 13128001 13140000 0 0 Deletion 11999 LOC_Os11g23220 myosin, putative, expressed FN3028-S Chr11 13371001 13380000 0 0 Deletion 8999 LOC_Os11g23736 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 13412001 13455000 0 0 Deletion 42999 LOC_Os11g23740 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr11 13412001 13455000 0 0 Deletion 42999 LOC_Os11g23750 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr11 13412001 13455000 0 0 Deletion 42999 LOC_Os11g23760 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr11 13412001 13455000 0 0 Deletion 42999 LOC_Os11g23770 cysteine protease, putative, expressed FN3028-S Chr11 13412001 13455000 0 0 Deletion 42999 LOC_Os11g23780 expressed protein FN3028-S Chr11 13539001 13557000 0 0 Deletion 17999 LOC_Os11g23900 retrotransposon protein, putative, unclassified FN3028-S Chr11 13539001 13557000 0 0 Deletion 17999 LOC_Os11g23910 retrotransposon protein, putative, unclassified FN3028-S Chr11 13539001 13557000 0 0 Deletion 17999 LOC_Os11g23920 expressed protein FN3028-S Chr11 13725001 13757000 0 0 Deletion 31999 LOC_Os11g24170 CC-NBS-LRR protein, putative, expressed FN3028-S Chr11 13725001 13757000 0 0 Deletion 31999 LOC_Os11g24810 transposon protein, putative, unclassified, expressed FN3028-S Chr11 14139001 14247000 0 0 Deletion 107999 LOC_Os11g24824 expressed protein FN3028-S Chr11 14139001 14247000 0 0 Deletion 107999 LOC_Os11g24840 ankyrin repeat family protein, putative, expressed FN3028-S Chr11 14139001 14247000 0 0 Deletion 107999 LOC_Os11g24850 ankyrin repeat domain containing protein, expressed FN3028-S Chr11 14139001 14247000 0 0 Deletion 107999 LOC_Os11g24860 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr11 14139001 14247000 0 0 Deletion 107999 LOC_Os11g24870 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr11 14139001 14247000 0 0 Deletion 107999 LOC_Os11g24880 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr11 14139001 14247000 0 0 Deletion 107999 LOC_Os11g24890 expressed protein FN3028-S Chr11 14139001 14247000 0 0 Deletion 107999 LOC_Os11g24900 expressed protein FN3028-S Chr11 14139001 14247000 0 0 Deletion 107999 LOC_Os11g24910 hypothetical protein FN3028-S Chr11 14139001 14247000 0 0 Deletion 107999 LOC_Os11g24920 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 14139001 14247000 0 0 Deletion 107999 LOC_Os11g24930 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 14139001 14247000 0 0 Deletion 107999 LOC_Os11g24940 expressed protein FN3028-S Chr11 14139001 14247000 0 0 Deletion 107999 LOC_Os11g24950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 14139001 14247000 0 0 Deletion 107999 LOC_Os11g24964 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr11 14139001 14247000 0 0 Deletion 107999 LOC_Os11g24980 hypothetical protein FN3028-S Chr11 14139001 14247000 0 0 Deletion 107999 LOC_Os11g24990 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 14139001 14247000 0 0 Deletion 107999 LOC_Os11g25000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr11 14139001 14247000 0 0 Deletion 107999 LOC_Os11g25010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr11 14288001 14303000 0 0 Deletion 14999 LOC_Os11g25070 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 14288001 14303000 0 0 Deletion 14999 LOC_Os11g25080 expressed protein FN3028-S Chr11 14288001 14303000 0 0 Deletion 14999 LOC_Os11g25090 expressed protein FN3028-S Chr11 14288001 14303000 0 0 Deletion 14999 LOC_Os11g26410 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr11 15347001 15401000 0 0 Deletion 53999 LOC_Os11g26810 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 15347001 15401000 0 0 Deletion 53999 LOC_Os11g26910 SKP1-like protein 1B, putative, expressed FN3028-S Chr11 15458001 15497000 0 0 Deletion 38999 LOC_Os11g26920 transposon protein, putative, Mariner sub-class, expressed FN3028-S Chr11 15458001 15497000 0 0 Deletion 38999 LOC_Os11g26930 expressed protein FN3028-S Chr11 15458001 15497000 0 0 Deletion 38999 LOC_Os11g26940 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 15458001 15497000 0 0 Deletion 38999 LOC_Os11g26950 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed FN3028-S Chr11 15638001 15704000 0 0 Deletion 65999 LOC_Os11g27170 OsSCP58 - Putative Serine Carboxypeptidase homologue, expressed FN3028-S Chr11 15638001 15704000 0 0 Deletion 65999 LOC_Os11g27210 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 15638001 15704000 0 0 Deletion 65999 LOC_Os11g27220 hypothetical protein FN3028-S Chr11 15638001 15704000 0 0 Deletion 65999 LOC_Os11g27240 pentatricopeptide repeat domain containing protein, putative, expressed FN3028-S Chr11 15638001 15704000 0 0 Deletion 65999 LOC_Os11g27250 expressed protein FN3028-S Chr11 15638001 15704000 0 0 Deletion 65999 LOC_Os11g27264 OsSCP60 - Putative Serine Carboxypeptidase homologue, expressed FN3028-S Chr11 15638001 15704000 0 0 Deletion 65999 LOC_Os11g27280 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr11 15638001 15704000 0 0 Deletion 65999 LOC_Os11g27290 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr11 15638001 15704000 0 0 Deletion 65999 LOC_Os11g27300 expressed protein FN3028-S Chr11 15966001 15990000 0 0 Deletion 23999 LOC_Os11g27750 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 15966001 15990000 0 0 Deletion 23999 LOC_Os11g27760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 15966001 15990000 0 0 Deletion 23999 LOC_Os11g27770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 15966001 15990000 0 0 Deletion 23999 LOC_Os11g27780 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr11 15966001 15990000 0 0 Deletion 23999 LOC_Os11g27810 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 16014001 16041000 0 0 Deletion 26999 LOC_Os11g27830 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 16014001 16041000 0 0 Deletion 26999 LOC_Os11g27840 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr11 16014001 16041000 0 0 Deletion 26999 LOC_Os11g27850 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 16014001 16041000 0 0 Deletion 26999 LOC_Os11g27860 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr11 16014001 16041000 0 0 Deletion 26999 LOC_Os11g27870 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 16014001 16041000 0 0 Deletion 26999 LOC_Os11g27910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 16061001 16091000 0 0 Deletion 29999 LOC_Os11g27920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 16061001 16091000 0 0 Deletion 29999 LOC_Os11g27930 hypothetical protein FN3028-S Chr11 16061001 16091000 0 0 Deletion 29999 LOC_Os11g27940 expressed protein FN3028-S Chr11 16061001 16091000 0 0 Deletion 29999 LOC_Os11g27960 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr11 16061001 16091000 0 0 Deletion 29999 LOC_Os11g27970 glycine-rich cell wall structural protein 1 precursor, putative, expressed FN3028-S Chr11 16061001 16091000 0 0 Deletion 29999 LOC_Os11g27980 lipase class 3 family protein, putative, expressed FN3028-S Chr11 16061001 16091000 0 0 Deletion 29999 LOC_Os11g27990 hypothetical protein FN3028-S Chr11 16061001 16091000 0 0 Deletion 29999 LOC_Os11g28550 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr11 16460001 16535000 0 0 Deletion 74999 LOC_Os11g28560 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 16460001 16535000 0 0 Deletion 74999 LOC_Os11g28570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 16460001 16535000 0 0 Deletion 74999 LOC_Os11g28580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 16460001 16535000 0 0 Deletion 74999 LOC_Os11g28590 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr11 16460001 16535000 0 0 Deletion 74999 LOC_Os11g28600 expressed protein FN3028-S Chr11 16460001 16535000 0 0 Deletion 74999 LOC_Os11g28610 transporter family protein, putative, expressed FN3028-S Chr11 16460001 16535000 0 0 Deletion 74999 LOC_Os11g28700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 16496626 16496636 0 0 Deletion 10 intergenic_region HET FN3028-S Chr11 16595001 16629000 0 0 Deletion 33999 LOC_Os11g28710 expressed protein FN3028-S Chr11 16595001 16629000 0 0 Deletion 33999 LOC_Os11g28720 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 16595001 16629000 0 0 Deletion 33999 LOC_Os11g28730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 1662001 1684000 0 0 Deletion 21999 LOC_Os11g04120 hypothetical protein FN3028-S Chr11 1662001 1684000 0 0 Deletion 21999 LOC_Os11g04130 nodulin MtN21 family protein, putative, expressed FN3028-S Chr11 1662001 1684000 0 0 Deletion 21999 LOC_Os11g04140 nodulin, putative, expressed FN3028-S Chr11 1662001 1684000 0 0 Deletion 21999 LOC_Os11g04150 major facilitator superfamily antiporter, putative, expressed FN3028-S Chr11 1662001 1684000 0 0 Deletion 21999 LOC_Os11g05200 zinc finger, C3HC4 type domain containing protein, expressed FN3028-S Chr11 16785001 16804000 0 0 Deletion 18999 LOC_Os11g29190 40S ribosomal protein S5, putative, expressed FN3028-S Chr11 16917001 16934000 0 0 Deletion 16999 LOC_Os11g29200 protein transport protein, putative, expressed FN3028-S Chr11 16917001 16934000 0 0 Deletion 16999 LOC_Os11g34070 hypothetical protein FN3028-S Chr11 17538111 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g30170 transposon protein, putative, unclassified, expressed FN3028-S Chr11 17565222 17565223 0 0 Deletion 1 upstream_gene_variant HET FN3028-S Chr11 17928335 Chr9 5981935 0 Translocation 0 FN3028-S Chr11 19913001 19928000 0 0 Deletion 14999 LOC_Os11g34070 hypothetical protein FN3028-S Chr11 20107001 20121000 0 0 Deletion 13999 LOC_Os11g34310 centromere/kinetochore protein zw10, putative, expressed FN3028-S Chr11 20107001 20121000 0 0 Deletion 13999 LOC_Os11g34320 regulator of chromosome condensation, putative, expressed FN3028-S Chr11 20107001 20121000 0 0 Deletion 13999 LOC_Os11g34910 expressed protein FN3028-S Chr11 20377115 20377115 0 0 Insertion 4 upstream_gene_variant HET FN3028-S Chr11 20459001 20487000 0 0 Deletion 27999 LOC_Os11g34920 stripe rust resistance protein Yr10, putative, expressed FN3028-S Chr11 20459001 20487000 0 0 Deletion 27999 LOC_Os11g34930 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr11 20459001 20487000 0 0 Deletion 27999 LOC_Os11g34940 plastid-specific 50S ribosomal protein 6, chloroplast precursor, putative, expressed FN3028-S Chr11 20459001 20487000 0 0 Deletion 27999 LOC_Os11g34950 expressed protein FN3028-S Chr11 20822001 20861000 0 0 Deletion 38999 LOC_Os11g35530 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr11 20822001 20861000 0 0 Deletion 38999 LOC_Os11g35540 expressed protein FN3028-S Chr11 20822001 20861000 0 0 Deletion 38999 LOC_Os11g35550 Leucine Rich Repeat family protein, expressed FN3028-S Chr11 20822001 20861000 0 0 Deletion 38999 LOC_Os11g35560 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 20822001 20861000 0 0 Deletion 38999 LOC_Os11g35570 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 20822001 20861000 0 0 Deletion 38999 LOC_Os11g35580 disease resistance protein RPM1, putative, expressed FN3028-S Chr11 20901001 20939000 0 0 Deletion 37999 LOC_Os11g35660 leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed FN3028-S Chr11 20901001 20939000 0 0 Deletion 37999 LOC_Os11g35670 expressed protein FN3028-S Chr11 20901001 20939000 0 0 Deletion 37999 LOC_Os11g35680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 20901001 20939000 0 0 Deletion 37999 LOC_Os11g35690 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 20901001 20939000 0 0 Deletion 37999 LOC_Os11g35700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 21205001 21225000 0 0 Deletion 19999 LOC_Os11g36090 receptor kinase, putative, expressed FN3028-S Chr11 21205001 21225000 0 0 Deletion 19999 LOC_Os11g36100 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 21205001 21225000 0 0 Deletion 19999 LOC_Os11g36140 receptor-like protein kinase 2 precursor, putative, expressed FN3028-S Chr11 21243001 21261000 0 0 Deletion 17999 LOC_Os11g36150 receptor-like protein kinase 2 precursor, putative, expressed FN3028-S Chr11 21243001 21261000 0 0 Deletion 17999 LOC_Os11g36190 receptor kinase, putative, expressed FN3028-S Chr11 21278001 21286000 0 0 Deletion 7999 LOC_Os11g36270 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 21352001 21367000 0 0 Deletion 14999 LOC_Os11g36280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr11 21352001 21367000 0 0 Deletion 14999 LOC_Os11g36960 dnaJ domain containing protein, expressed FN3028-S Chr11 21800001 21860000 0 0 Deletion 59999 LOC_Os11g36970 zinc finger C3HC4 type family protein, putative, expressed FN3028-S Chr11 21800001 21860000 0 0 Deletion 59999 LOC_Os11g36980 expressed protein FN3028-S Chr11 21800001 21860000 0 0 Deletion 59999 LOC_Os11g36990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr11 21800001 21860000 0 0 Deletion 59999 LOC_Os11g37000 heat shock protein DnaJ, putative, expressed FN3028-S Chr11 21800001 21860000 0 0 Deletion 59999 LOC_Os11g37010 expressed protein FN3028-S Chr11 21800001 21860000 0 0 Deletion 59999 LOC_Os11g37020 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 21800001 21860000 0 0 Deletion 59999 LOC_Os11g38750 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 2298001 2337000 0 0 Deletion 38999 LOC_Os11g05210 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 2298001 2337000 0 0 Deletion 38999 LOC_Os11g05220 transposon protein, putative, unclassified, expressed FN3028-S Chr11 2298001 2337000 0 0 Deletion 38999 LOC_Os11g05230 zinc finger, C3HC4 type domain containing protein, expressed FN3028-S Chr11 2298001 2337000 0 0 Deletion 38999 LOC_Os11g05240 PAN domain-containing protein At5g03700 precursor, putative, expressed FN3028-S Chr11 2298001 2337000 0 0 Deletion 38999 LOC_Os11g05250 hypothetical protein FN3028-S Chr11 2298001 2337000 0 0 Deletion 38999 LOC_Os11g05260 phosphoglycerate mutase, putative, expressed FN3028-S Chr11 2298001 2337000 0 0 Deletion 38999 LOC_Os11g05270 hypothetical protein FN3028-S Chr11 2298001 2337000 0 0 Deletion 38999 LOC_Os11g06180 nodulation-signaling pathway 2 protein, putative, expressed FN3028-S Chr11 22991001 23023000 0 0 Deletion 31999 LOC_Os11g39100 expressed protein FN3028-S Chr11 23272001 23312000 0 0 Deletion 39999 LOC_Os11g39110 expressed protein FN3028-S Chr11 23272001 23312000 0 0 Deletion 39999 LOC_Os11g39120 expressed protein FN3028-S Chr11 23272001 23312000 0 0 Deletion 39999 LOC_Os11g39130 zinc finger, C3HC4 type family protein, expressed FN3028-S Chr11 23272001 23312000 0 0 Deletion 39999 LOC_Os11g39140 thioredoxin domain-containing protein 9, putative, expressed FN3028-S Chr11 23272001 23312000 0 0 Deletion 39999 LOC_Os11g39150 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 23272001 23312000 0 0 Deletion 39999 LOC_Os11g39160 NBS-LRR disease resistance protein, putative, expressed FN3028-S Chr11 23272001 23312000 0 0 Deletion 39999 LOC_Os11g39270 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr11 23384001 23438000 0 0 Deletion 53999 LOC_Os11g39280 disease resistance protein, putative, expressed FN3028-S Chr11 23384001 23438000 0 0 Deletion 53999 LOC_Os11g39290 Leucine Rich Repeat family protein, expressed FN3028-S Chr11 23384001 23438000 0 0 Deletion 53999 LOC_Os11g39300 expressed protein FN3028-S Chr11 23384001 23438000 0 0 Deletion 53999 LOC_Os11g39310 NB-ARC domain containing protein, expressed FN3028-S Chr11 23384001 23438000 0 0 Deletion 53999 LOC_Os11g39320 LZ-NBS-LRR class, putative, expressed FN3028-S Chr11 23384001 23438000 0 0 Deletion 53999 LOC_Os11g39330 NB-ARC domain containing protein, putative, expressed FN3028-S Chr11 23384001 23438000 0 0 Deletion 53999 LOC_Os11g39350 expressed protein FN3028-S Chr11 23384001 23438000 0 0 Deletion 53999 LOC_Os11g39360 pentatricopeptide repeat domain containing protein, putative, expressed FN3028-S Chr11 23384001 23438000 0 0 Deletion 53999 LOC_Os11g39370 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed FN3028-S Chr11 23384001 23438000 0 0 Deletion 53999 LOC_Os11g39910 DEFL80 - Defensin and Defensin-like DEFL family, expressed FN3028-S Chr11 23781001 23797000 0 0 Deletion 15999 LOC_Os11g39910 DEFL80 - Defensin and Defensin-like DEFL family, expressed FN3028-S Chr11 23781001 23797000 0 0 Deletion 15999 LOC_Os11g39920 expressed protein FN3028-S Chr11 23961001 23989000 0 0 Deletion 27999 LOC_Os11g40200 expressed protein FN3028-S Chr11 23961001 23989000 0 0 Deletion 27999 LOC_Os11g40210 remorin C-terminal domain containing protein, putative, expressed FN3028-S Chr11 23961001 23989000 0 0 Deletion 27999 LOC_Os11g40370 protein kinase family protein, putative, expressed FN3028-S Chr11 24067001 24092000 0 0 Deletion 24999 LOC_Os11g40380 expressed protein FN3028-S Chr11 24067001 24092000 0 0 Deletion 24999 LOC_Os11g40390 expressed protein FN3028-S Chr11 24067001 24092000 0 0 Deletion 24999 LOC_Os11g40400 protein kinase, putative, expressed FN3028-S Chr11 24067001 24092000 0 0 Deletion 24999 LOC_Os11g40410 expressed protein FN3028-S Chr11 24067001 24092000 0 0 Deletion 24999 LOC_Os11g40450 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr11 24722001 24767000 0 0 Deletion 44999 LOC_Os11g41240 ATBPM6, putative FN3028-S Chr11 24722001 24767000 0 0 Deletion 44999 LOC_Os11g41250 expressed protein FN3028-S Chr11 24722001 24767000 0 0 Deletion 44999 LOC_Os11g41260 snRNP protein, putative, expressed FN3028-S Chr11 24722001 24767000 0 0 Deletion 44999 LOC_Os11g41270 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 24722001 24767000 0 0 Deletion 44999 LOC_Os11g41280 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 24722001 24767000 0 0 Deletion 44999 LOC_Os11g41290 MrBTB5 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH-related domain, expressed FN3028-S Chr11 24722001 24767000 0 0 Deletion 44999 LOC_Os11g41300 MBTB65 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3028-S Chr11 24722001 24767000 0 0 Deletion 44999 LOC_Os11g41310 MBTB66 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3028-S Chr11 24864001 24898000 0 0 Deletion 33999 LOC_Os11g41450 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 24864001 24898000 0 0 Deletion 33999 LOC_Os11g41460 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 24864001 24898000 0 0 Deletion 33999 LOC_Os11g41470 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 24864001 24898000 0 0 Deletion 33999 LOC_Os11g41480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 24864001 24898000 0 0 Deletion 33999 LOC_Os11g41490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 24864001 24898000 0 0 Deletion 33999 LOC_Os11g41500 NC domain-containing protein, putative, expressed FN3028-S Chr11 24864001 24898000 0 0 Deletion 33999 LOC_Os11g41540 disease resistance RPP8-like protein 3, putative, expressed FN3028-S Chr11 24910001 24936000 0 0 Deletion 25999 LOC_Os11g41550 expressed protein FN3028-S Chr11 24910001 24936000 0 0 Deletion 25999 LOC_Os11g41560 OsFBX427 - F-box domain containing protein, expressed FN3028-S Chr11 24910001 24936000 0 0 Deletion 25999 LOC_Os11g41720 TNP1, putative, expressed FN3028-S Chr11 25044001 25056000 0 0 Deletion 11999 LOC_Os11g42190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr11 25414001 25432000 0 0 Deletion 17999 LOC_Os11g42190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr11 25414001 25432000 0 0 Deletion 17999 LOC_Os11g42200 laccase precursor protein, putative, expressed FN3028-S Chr11 25414001 25432000 0 0 Deletion 17999 LOC_Os11g42210 expressed protein FN3028-S Chr11 25666001 25692000 0 0 Deletion 25999 LOC_Os11g42640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 25666001 25692000 0 0 Deletion 25999 LOC_Os11g42650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 25666001 25692000 0 0 Deletion 25999 LOC_Os11g43230 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr11 26076001 26103000 0 0 Deletion 26999 LOC_Os11g43240 expressed protein FN3028-S Chr11 26076001 26103000 0 0 Deletion 26999 LOC_Os11g43250 Leucine Rich Repeat family protein, expressed FN3028-S Chr11 26076001 26103000 0 0 Deletion 26999 LOC_Os11g43260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr11 26076001 26103000 0 0 Deletion 26999 LOC_Os11g43760 lipase class 3 family protein, putative, expressed FN3028-S Chr11 26426001 26448000 0 0 Deletion 21999 LOC_Os11g43770 Leucine Rich Repeat family protein, expressed FN3028-S Chr11 26426001 26448000 0 0 Deletion 21999 LOC_Os11g43780 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 26426001 26448000 0 0 Deletion 21999 LOC_Os11g44000 expressed protein FN3028-S Chr11 26586001 26602000 0 0 Deletion 15999 LOC_Os11g44014 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 26621001 26643000 0 0 Deletion 21999 LOC_Os11g44050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 26621001 26643000 0 0 Deletion 21999 LOC_Os11g44060 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr11 26621001 26643000 0 0 Deletion 21999 LOC_Os11g44070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 26621001 26643000 0 0 Deletion 21999 LOC_Os11g44084 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr11 26621001 26643000 0 0 Deletion 21999 LOC_Os11g44100 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr11 26621001 26643000 0 0 Deletion 21999 LOC_Os11g44110 expressed protein FN3028-S Chr11 2950001 2987000 0 0 Deletion 36999 LOC_Os11g06190 expressed protein FN3028-S Chr11 2950001 2987000 0 0 Deletion 36999 LOC_Os11g06200 expressed protein FN3028-S Chr11 2950001 2987000 0 0 Deletion 36999 LOC_Os11g06210 expressed protein FN3028-S Chr11 2950001 2987000 0 0 Deletion 36999 LOC_Os11g06220 expressed protein FN3028-S Chr11 2950001 2987000 0 0 Deletion 36999 LOC_Os11g06230 expressed protein FN3028-S Chr11 2950001 2987000 0 0 Deletion 36999 LOC_Os11g06234 expressed protein FN3028-S Chr11 2950001 2987000 0 0 Deletion 36999 LOC_Os11g06240 ATOZI1, putative, expressed FN3028-S Chr11 2950001 2987000 0 0 Deletion 36999 LOC_Os11g07124 EFR, putative, expressed FN3028-S Chr11 3552001 3591000 0 0 Deletion 38999 LOC_Os11g07130 receptor kinase, putative, expressed FN3028-S Chr11 3552001 3591000 0 0 Deletion 38999 LOC_Os11g07140 receptor kinase, putative, expressed FN3028-S Chr11 3552001 3591000 0 0 Deletion 38999 LOC_Os11g07150 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 3552001 3591000 0 0 Deletion 38999 LOC_Os11g07160 receptor protein kinase CLAVATA1 precursor, putative, expressed FN3028-S Chr11 3552001 3591000 0 0 Deletion 38999 LOC_Os11g07170 receptor kinase, putative, expressed FN3028-S Chr11 3552001 3591000 0 0 Deletion 38999 LOC_Os11g07180 receptor protein kinase CLAVATA1 precursor, putative, expressed FN3028-S Chr11 3552001 3591000 0 0 Deletion 38999 LOC_Os11g07225 expressed protein FN3028-S Chr11 3629001 3669000 0 0 Deletion 39999 LOC_Os11g07230 receptor kinase, putative, expressed FN3028-S Chr11 3629001 3669000 0 0 Deletion 39999 LOC_Os11g07240 serine/threonine-protein kinase BRI1-like 2 precursor, putative, expressed FN3028-S Chr11 3629001 3669000 0 0 Deletion 39999 LOC_Os11g07250 receptor kinase, putative, expressed FN3028-S Chr11 3629001 3669000 0 0 Deletion 39999 LOC_Os11g07260 expressed protein FN3028-S Chr11 3629001 3669000 0 0 Deletion 39999 LOC_Os11g07270 expressed protein FN3028-S Chr11 3629001 3669000 0 0 Deletion 39999 LOC_Os11g07280 coatomer subunit beta-1, putative, expressed FN3028-S Chr11 3629001 3669000 0 0 Deletion 39999 LOC_Os11g07650 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 3904001 3952000 0 0 Deletion 47999 LOC_Os11g07660 hypothetical protein FN3028-S Chr11 3904001 3952000 0 0 Deletion 47999 LOC_Os11g07670 dirigent, putative, expressed FN3028-S Chr11 3904001 3952000 0 0 Deletion 47999 LOC_Os11g07680 dirigent, putative, expressed FN3028-S Chr11 3904001 3952000 0 0 Deletion 47999 LOC_Os11g07690 dirigent, putative, expressed FN3028-S Chr11 3904001 3952000 0 0 Deletion 47999 LOC_Os11g07700 NAM, putative, expressed FN3028-S Chr11 3904001 3952000 0 0 Deletion 47999 LOC_Os11g07710 dirigent, putative, expressed FN3028-S Chr11 3904001 3952000 0 0 Deletion 47999 LOC_Os11g07720 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 3904001 3952000 0 0 Deletion 47999 LOC_Os11g07730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 3904001 3952000 0 0 Deletion 47999 LOC_Os11g07810 retrotransposon protein, putative, unclassified FN3028-S Chr11 3988001 4007000 0 0 Deletion 18999 LOC_Os11g07820 expressed protein FN3028-S Chr11 3988001 4007000 0 0 Deletion 18999 LOC_Os11g07830 dirigent, putative, expressed FN3028-S Chr11 3988001 4007000 0 0 Deletion 18999 LOC_Os11g07840 expressed protein FN3028-S Chr11 3988001 4007000 0 0 Deletion 18999 LOC_Os11g07850 Protein-tyrosine phosphatase domain containing protein, expressed FN3028-S Chr11 3988001 4007000 0 0 Deletion 18999 LOC_Os11g08330 POLD1 - Putative DNA polymerase delta catalytic subunit, expressed FN3028-S Chr11 4392001 4453000 0 0 Deletion 60999 LOC_Os11g08340 OsGH3.12 - Probable indole-3-acetic acid-amido synthetase, expressed FN3028-S Chr11 4392001 4453000 0 0 Deletion 60999 LOC_Os11g08350 expressed protein FN3028-S Chr11 4392001 4453000 0 0 Deletion 60999 LOC_Os11g08360 expressed protein FN3028-S Chr11 4392001 4453000 0 0 Deletion 60999 LOC_Os11g08370 transporter, major facilitator family, putative, expressed FN3028-S Chr11 4392001 4453000 0 0 Deletion 60999 LOC_Os11g08380 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed FN3028-S Chr11 4392001 4453000 0 0 Deletion 60999 LOC_Os11g08390 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 4392001 4453000 0 0 Deletion 60999 LOC_Os11g08400 expressed protein FN3028-S Chr11 4392001 4453000 0 0 Deletion 60999 LOC_Os11g08410 GATA zinc finger domain containing protein, expressed FN3028-S Chr11 4392001 4453000 0 0 Deletion 60999 LOC_Os11g08420 expressed protein FN3028-S Chr11 4392001 4453000 0 0 Deletion 60999 LOC_Os11g08430 expressed protein FN3028-S Chr11 4392001 4453000 0 0 Deletion 60999 LOC_Os11g08440 DnaK family protein, putative, expressed FN3028-S Chr11 4392001 4453000 0 0 Deletion 60999 LOC_Os11g08445 DnaK family protein, putative, expressed FN3028-S Chr11 4392001 4453000 0 0 Deletion 60999 LOC_Os11g08569 cycloartenol synthase, putative, expressed FN3028-S Chr11 4530001 4558000 0 0 Deletion 27999 LOC_Os11g08569 cycloartenol synthase, putative, expressed FN3028-S Chr11 4530001 4558000 0 0 Deletion 27999 LOC_Os11g08590 expressed protein FN3028-S Chr11 4530001 4558000 0 0 Deletion 27999 LOC_Os11g09590 OsFBX404 - F-box domain containing protein, expressed FN3028-S Chr11 4845284 Chr4 30958422 0 Translocation 0 FN3028-S Chr11 4993381 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3028-S Chr11 5562001 5583000 0 0 Deletion 20999 LOC_Os11g10260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 5562001 5583000 0 0 Deletion 20999 LOC_Os11g10270 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr11 5562001 5583000 0 0 Deletion 20999 LOC_Os11g10280 receptor-like protein kinase, putative, expressed FN3028-S Chr11 5562001 5583000 0 0 Deletion 20999 LOC_Os11g10434 expressed protein FN3028-S Chr11 5672001 5696000 0 0 Deletion 23999 LOC_Os11g10434 expressed protein FN3028-S Chr11 5672001 5696000 0 0 Deletion 23999 LOC_Os11g10440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr11 5672001 5696000 0 0 Deletion 23999 LOC_Os11g10450 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr11 5792001 5833000 0 0 Deletion 40999 LOC_Os11g10570 NBS-LRR disease resistance protein, putative, expressed FN3028-S Chr11 5792001 5833000 0 0 Deletion 40999 LOC_Os11g10580 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr11 5792001 5833000 0 0 Deletion 40999 LOC_Os11g10590 expressed protein FN3028-S Chr11 5792001 5833000 0 0 Deletion 40999 LOC_Os11g10600 expressed protein FN3028-S Chr11 5792001 5833000 0 0 Deletion 40999 LOC_Os11g10610 NBS-LRR disease resistance protein, putative, expressed FN3028-S Chr11 5792001 5833000 0 0 Deletion 40999 LOC_Os11g10620 NBS-LRR disease resistance protein, putative, expressed FN3028-S Chr11 5792001 5833000 0 0 Deletion 40999 LOC_Os11g10630 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 5792001 5833000 0 0 Deletion 40999 LOC_Os11g10720 Cf2/Cf5 disease resistance protein, putative, expressed FN3028-S Chr11 5890001 5904000 0 0 Deletion 13999 LOC_Os11g10730 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 5890001 5904000 0 0 Deletion 13999 LOC_Os11g10740 tetratricopeptide-like helical, putative, expressed FN3028-S Chr11 5890001 5904000 0 0 Deletion 13999 LOC_Os11g10750 OsSCP48 - Putative Serine Carboxypeptidase homologue, expressed FN3028-S Chr11 5890001 5904000 0 0 Deletion 13999 LOC_Os11g11160 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr11 6173001 6207000 0 0 Deletion 33999 LOC_Os11g11170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 6173001 6207000 0 0 Deletion 33999 LOC_Os11g11180 expressed protein FN3028-S Chr11 6173001 6207000 0 0 Deletion 33999 LOC_Os11g11200 expressed protein FN3028-S Chr11 6173001 6207000 0 0 Deletion 33999 LOC_Os11g11210 OsClp12 - Putative Clp protease homologue, expressed FN3028-S Chr11 6173001 6207000 0 0 Deletion 33999 LOC_Os11g13420 RNA binding protein, putative, expressed FN3028-S Chr11 7348001 7378000 0 0 Deletion 29999 LOC_Os11g13430 RGH1A, putative, expressed FN3028-S Chr11 7348001 7378000 0 0 Deletion 29999 LOC_Os11g13440 RGH1A, putative, expressed FN3028-S Chr11 7348001 7378000 0 0 Deletion 29999 LOC_Os11g13459 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 7348001 7378000 0 0 Deletion 29999 LOC_Os11g13694 AGAP007117-PA, putative, expressed FN3028-S Chr11 7505001 7548000 0 0 Deletion 42999 LOC_Os11g13710 expressed protein FN3028-S Chr11 7505001 7548000 0 0 Deletion 42999 LOC_Os11g13900 expressed protein FN3028-S Chr11 7664001 7693000 0 0 Deletion 28999 LOC_Os11g13910 expressed protein FN3028-S Chr11 7664001 7693000 0 0 Deletion 28999 LOC_Os11g13920 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 7664001 7693000 0 0 Deletion 28999 LOC_Os11g13940 NBS-LRR disease resistance protein, putative, expressed FN3028-S Chr11 7717001 7737000 0 0 Deletion 19999 LOC_Os11g13950 hypothetical protein FN3028-S Chr11 7717001 7737000 0 0 Deletion 19999 LOC_Os11g13960 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr11 7717001 7737000 0 0 Deletion 19999 LOC_Os11g14330 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 8221001 8268000 0 0 Deletion 46999 LOC_Os11g14600 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 8221001 8268000 0 0 Deletion 46999 LOC_Os11g14610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 8221001 8268000 0 0 Deletion 46999 LOC_Os11g14620 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 8221001 8268000 0 0 Deletion 46999 LOC_Os11g14630 expressed protein FN3028-S Chr11 8221001 8268000 0 0 Deletion 46999 LOC_Os11g14640 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr11 8221001 8268000 0 0 Deletion 46999 LOC_Os11g14650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 8221001 8268000 0 0 Deletion 46999 LOC_Os11g14660 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr11 8221001 8268000 0 0 Deletion 46999 LOC_Os11g14670 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr11 8435001 8507000 0 0 Deletion 71999 LOC_Os11g14980 pentatricopeptide, putative, expressed FN3028-S Chr11 8435001 8507000 0 0 Deletion 71999 LOC_Os11g14990 expressed protein FN3028-S Chr11 8435001 8507000 0 0 Deletion 71999 LOC_Os11g15000 expressed protein FN3028-S Chr11 8435001 8507000 0 0 Deletion 71999 LOC_Os11g15010 transposon protein, putative, Mutator sub-class, expressed FN3028-S Chr11 8435001 8507000 0 0 Deletion 71999 LOC_Os11g15020 expressed protein FN3028-S Chr11 8435001 8507000 0 0 Deletion 71999 LOC_Os11g15030 SAM dependent carboxyl methyltransferase, putative, expressed FN3028-S Chr11 8435001 8507000 0 0 Deletion 71999 LOC_Os11g15040 S-adenosyl-L-methionine:benzoic acid/salicylic acid carboxyl methyltransferase, putative, expressed FN3028-S Chr11 8435001 8507000 0 0 Deletion 71999 LOC_Os11g15050 expressed protein FN3028-S Chr11 8435001 8507000 0 0 Deletion 71999 LOC_Os11g15060 SAM dependent carboxyl methyltransferase, putative, expressed FN3028-S Chr11 8435001 8507000 0 0 Deletion 71999 LOC_Os11g15070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 8435001 8507000 0 0 Deletion 71999 LOC_Os11g15080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 8435001 8507000 0 0 Deletion 71999 LOC_Os11g15090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 8435001 8507000 0 0 Deletion 71999 LOC_Os11g15100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 8435001 8507000 0 0 Deletion 71999 LOC_Os11g15110 nucleic acid binding protein, putative, expressed FN3028-S Chr11 8588001 8610000 0 0 Deletion 21999 LOC_Os11g15230 expressed protein FN3028-S Chr11 8588001 8610000 0 0 Deletion 21999 LOC_Os11g15240 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 8588001 8610000 0 0 Deletion 21999 LOC_Os11g15430 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr11 8744001 8836000 0 0 Deletion 91999 LOC_Os11g15440 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 8744001 8836000 0 0 Deletion 91999 LOC_Os11g15450 retrotransposon protein, putative, unclassified FN3028-S Chr11 8744001 8836000 0 0 Deletion 91999 LOC_Os11g15460 expressed protein FN3028-S Chr11 8744001 8836000 0 0 Deletion 91999 LOC_Os11g15470 expressed protein FN3028-S Chr11 8744001 8836000 0 0 Deletion 91999 LOC_Os11g15480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 8744001 8836000 0 0 Deletion 91999 LOC_Os11g15490 expressed protein FN3028-S Chr11 8744001 8836000 0 0 Deletion 91999 LOC_Os11g15500 stripe rust resistance protein Yr10, putative, expressed FN3028-S Chr11 8744001 8836000 0 0 Deletion 91999 LOC_Os11g15510 expressed protein FN3028-S Chr11 8744001 8836000 0 0 Deletion 91999 LOC_Os11g15520 OsSub62 - Putative Subtilisin homologue, expressed FN3028-S Chr11 8744001 8836000 0 0 Deletion 91999 LOC_Os11g15530 conserved hypothetical protein FN3028-S Chr11 8744001 8836000 0 0 Deletion 91999 LOC_Os11g15540 hypothetical protein FN3028-S Chr11 8744001 8836000 0 0 Deletion 91999 LOC_Os11g15550 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr11 8744001 8836000 0 0 Deletion 91999 LOC_Os11g15560 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 8744001 8836000 0 0 Deletion 91999 LOC_Os11g15570 Ser/Thr protein phosphatase family protein, putative, expressed FN3028-S Chr11 8744001 8836000 0 0 Deletion 91999 LOC_Os11g15670 NBS-LRR disease resistance protein, putative, expressed FN3028-S Chr11 8885001 8929000 0 0 Deletion 43999 LOC_Os11g15680 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr11 8885001 8929000 0 0 Deletion 43999 LOC_Os11g15690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr11 8885001 8929000 0 0 Deletion 43999 LOC_Os11g15700 NB-ARC domain containing protein, expressed FN3028-S Chr11 8885001 8929000 0 0 Deletion 43999 LOC_Os11g15710 hypothetical protein FN3028-S Chr11 8885001 8929000 0 0 Deletion 43999 LOC_Os11g15720 expressed protein FN3028-S Chr11 8885001 8929000 0 0 Deletion 43999 LOC_Os11g15730 hypothetical protein FN3028-S Chr11 8885001 8929000 0 0 Deletion 43999 LOC_Os11g15740 hypothetical protein FN3028-S Chr11 8885001 8929000 0 0 Deletion 43999 LOC_Os11g15750 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 8885001 8929000 0 0 Deletion 43999 LOC_Os11g15755 transposon protein, putative, unclassified, expressed FN3028-S Chr11 8885001 8929000 0 0 Deletion 43999 LOC_Os11g16370 uridine/cytidine kinase-like 1, putative, expressed FN3028-S Chr11 9038001 9055000 0 0 Deletion 16999 LOC_Os11g16380 hypothetical protein FN3028-S Chr11 9038001 9055000 0 0 Deletion 16999 LOC_Os11g16660 hypothetical protein FN3028-S Chr11 9237001 9327000 0 0 Deletion 89999 LOC_Os11g16670 expressed protein FN3028-S Chr11 9237001 9327000 0 0 Deletion 89999 LOC_Os11g16680 transferase family protein, putative, expressed FN3028-S Chr11 9237001 9327000 0 0 Deletion 89999 LOC_Os11g16690 retrotransposon protein, putative, unclassified FN3028-S Chr11 9237001 9327000 0 0 Deletion 89999 LOC_Os11g16710 expressed protein FN3028-S Chr11 9237001 9327000 0 0 Deletion 89999 LOC_Os11g16720 expressed protein FN3028-S Chr11 9237001 9327000 0 0 Deletion 89999 LOC_Os11g16730 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr11 9237001 9327000 0 0 Deletion 89999 LOC_Os11g16740 transposon protein, putative, unclassified, expressed FN3028-S Chr11 9237001 9327000 0 0 Deletion 89999 LOC_Os11g16750 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr11 9237001 9327000 0 0 Deletion 89999 LOC_Os11g16760 hypothetical protein FN3028-S Chr11 9237001 9327000 0 0 Deletion 89999 LOC_Os11g16770 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed FN3028-S Chr11 9237001 9327000 0 0 Deletion 89999 LOC_Os11g16780 expressed protein FN3028-S Chr11 9237001 9327000 0 0 Deletion 89999 LOC_Os11g16790 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr11 9237001 9327000 0 0 Deletion 89999 LOC_Os11g17120 disease resistance protein RPM1, putative FN3028-S Chr11 9506001 9553000 0 0 Deletion 46999 LOC_Os11g17130 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 9506001 9553000 0 0 Deletion 46999 LOC_Os11g17150 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 9506001 9553000 0 0 Deletion 46999 LOC_Os11g17160 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 9506001 9553000 0 0 Deletion 46999 LOC_Os11g17310 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr11 9651001 9670000 0 0 Deletion 18999 LOC_Os11g17320 hypothetical protein FN3028-S Chr11 9651001 9670000 0 0 Deletion 18999 LOC_Os11g17330 stripe rust resistance protein Yr10, putative, expressed FN3028-S Chr11 9988001 10014000 0 0 Deletion 25999 LOC_Os11g17850 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr11 9988001 10014000 0 0 Deletion 25999 LOC_Os11g17870 expressed protein FN3028-S Chr11 9988001 10014000 0 0 Deletion 25999 LOC_Os11g17880 expressed protein FN3028-S Chr11 9988001 10014000 0 0 Deletion 25999 LOC_Os11g17890 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 10385001 10486000 0 0 Deletion 100999 LOC_Os12g18070 expressed protein FN3028-S Chr12 10385001 10486000 0 0 Deletion 100999 LOC_Os12g18080 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 10385001 10486000 0 0 Deletion 100999 LOC_Os12g18090 expressed protein FN3028-S Chr12 10385001 10486000 0 0 Deletion 100999 LOC_Os12g18100 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr12 10385001 10486000 0 0 Deletion 100999 LOC_Os12g18110 PQ loop repeat domain containing protein, expressed FN3028-S Chr12 10385001 10486000 0 0 Deletion 100999 LOC_Os12g18120 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed FN3028-S Chr12 10385001 10486000 0 0 Deletion 100999 LOC_Os12g18130 expressed protein FN3028-S Chr12 10385001 10486000 0 0 Deletion 100999 LOC_Os12g18140 superkiller viralicidic activity 2-like 2, putative, expressed FN3028-S Chr12 10385001 10486000 0 0 Deletion 100999 LOC_Os12g18150 ZOS12-04 - C2H2 zinc finger protein, expressed FN3028-S Chr12 10385001 10486000 0 0 Deletion 100999 LOC_Os12g18160 expressed protein FN3028-S Chr12 10385001 10486000 0 0 Deletion 100999 LOC_Os12g18760 peptidase family C78 domain containing protein, expressed FN3028-S Chr12 10846001 10874000 0 0 Deletion 27999 LOC_Os12g18770 oxysterol-binding protein, putative, expressed FN3028-S Chr12 10846001 10874000 0 0 Deletion 27999 LOC_Os12g18900 aminotransferase, putative, expressed FN3028-S Chr12 10966001 10989000 0 0 Deletion 22999 LOC_Os12g18910 transposon protein, putative, unclassified, expressed FN3028-S Chr12 10966001 10989000 0 0 Deletion 22999 LOC_Os12g18920 expressed protein FN3028-S Chr12 10966001 10989000 0 0 Deletion 22999 LOC_Os12g18930 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 10966001 10989000 0 0 Deletion 22999 LOC_Os12g19260 tetratricopeptide-like helical, putative, expressed FN3028-S Chr12 11166001 11177000 0 0 Deletion 10999 LOC_Os12g19270 expressed protein FN3028-S Chr12 11166001 11177000 0 0 Deletion 10999 LOC_Os12g19280 expressed protein FN3028-S Chr12 11166001 11177000 0 0 Deletion 10999 LOC_Os12g19350 expressed protein FN3028-S Chr12 1120001 1140000 0 0 Deletion 19999 LOC_Os12g03020 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr12 1120001 1140000 0 0 Deletion 19999 LOC_Os12g03030 conserved hypothetical protein FN3028-S Chr12 1120001 1140000 0 0 Deletion 19999 LOC_Os12g03040 no apical meristem protein, putative, expressed FN3028-S Chr12 1120001 1140000 0 0 Deletion 19999 LOC_Os12g03554 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed FN3028-S Chr12 11211001 11235000 0 0 Deletion 23999 LOC_Os12g19370 DNA polymerase I family protein, expressed FN3028-S Chr12 11255001 11280000 0 0 Deletion 24999 LOC_Os12g19381 ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed FN3028-S Chr12 11255001 11280000 0 0 Deletion 24999 LOC_Os12g19530 ATP-binding region, ATPase-like domain-containing protein, putative, expressed FN3028-S Chr12 11355001 11373000 0 0 Deletion 17999 LOC_Os12g19549 telomerase reverse transcriptase, putative, expressed FN3028-S Chr12 11355001 11373000 0 0 Deletion 17999 LOC_Os12g20169 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 11755001 11781000 0 0 Deletion 25999 LOC_Os12g20190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 11755001 11781000 0 0 Deletion 25999 LOC_Os12g20200 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 11826001 11860000 0 0 Deletion 33999 LOC_Os12g20280 expressed protein FN3028-S Chr12 11826001 11860000 0 0 Deletion 33999 LOC_Os12g20290 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 11826001 11860000 0 0 Deletion 33999 LOC_Os12g20300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 11826001 11860000 0 0 Deletion 33999 LOC_Os12g20340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 12246001 12260000 0 0 Deletion 13999 LOC_Os12g21780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 12246001 12260000 0 0 Deletion 13999 LOC_Os12g21784 expressed protein FN3028-S Chr12 12246001 12260000 0 0 Deletion 13999 LOC_Os12g21860 expressed protein FN3028-S Chr12 12308001 12332000 0 0 Deletion 23999 LOC_Os12g21870 type II intron maturase protein, putative, expressed FN3028-S Chr12 12308001 12332000 0 0 Deletion 23999 LOC_Os12g21880 OsMADS74 - MADS-box family gene with M-alpha type-box, expressed FN3028-S Chr12 12308001 12332000 0 0 Deletion 23999 LOC_Os12g21890 PTEN, putative, expressed FN3028-S Chr12 12308001 12332000 0 0 Deletion 23999 LOC_Os12g22000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 12374001 12394000 0 0 Deletion 19999 LOC_Os12g22020 expressed protein FN3028-S Chr12 12374001 12394000 0 0 Deletion 19999 LOC_Os12g22030 serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed FN3028-S Chr12 12374001 12394000 0 0 Deletion 19999 LOC_Os12g22320 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 12608001 12622000 0 0 Deletion 13999 LOC_Os12g22330 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 12608001 12622000 0 0 Deletion 13999 LOC_Os12g22340 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr12 12608001 12622000 0 0 Deletion 13999 LOC_Os12g22350 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr12 12608001 12622000 0 0 Deletion 13999 LOC_Os12g22360 hypothetical protein FN3028-S Chr12 12608001 12622000 0 0 Deletion 13999 LOC_Os12g22700 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 12815001 12839000 0 0 Deletion 23999 LOC_Os12g22710 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 12815001 12839000 0 0 Deletion 23999 LOC_Os12g22720 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 12815001 12839000 0 0 Deletion 23999 LOC_Os12g22730 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 12815001 12839000 0 0 Deletion 23999 LOC_Os12g22740 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 12815001 12839000 0 0 Deletion 23999 LOC_Os12g23640 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 13420001 13432000 0 0 Deletion 11999 LOC_Os12g23650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 13420001 13432000 0 0 Deletion 11999 LOC_Os12g23660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 13420001 13432000 0 0 Deletion 11999 LOC_Os12g23670 expressed protein FN3028-S Chr12 13420001 13432000 0 0 Deletion 11999 LOC_Os12g23890 expressed protein FN3028-S Chr12 13581001 13615000 0 0 Deletion 33999 LOC_Os12g23910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 13581001 13615000 0 0 Deletion 33999 LOC_Os12g23920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 13581001 13615000 0 0 Deletion 33999 LOC_Os12g23930 protein kinase domain containing protein, expressed FN3028-S Chr12 13581001 13615000 0 0 Deletion 33999 LOC_Os12g23940 protein kinase domain containing protein, expressed FN3028-S Chr12 13581001 13615000 0 0 Deletion 33999 LOC_Os12g23950 cyclin-dependent kinase G-2, putative, expressed FN3028-S Chr12 13581001 13615000 0 0 Deletion 33999 LOC_Os12g23990 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 1419001 1454000 0 0 Deletion 34999 LOC_Os12g03570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 1419001 1454000 0 0 Deletion 34999 LOC_Os12g03580 expressed protein FN3028-S Chr12 1419001 1454000 0 0 Deletion 34999 LOC_Os12g03594 OsFBX437 - F-box domain containing protein, expressed FN3028-S Chr12 1419001 1454000 0 0 Deletion 34999 LOC_Os12g03601 expressed protein FN3028-S Chr12 1419001 1454000 0 0 Deletion 34999 LOC_Os12g03610 expressed protein FN3028-S Chr12 1419001 1454000 0 0 Deletion 34999 LOC_Os12g03630 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed FN3028-S Chr12 1419001 1454000 0 0 Deletion 34999 LOC_Os12g04050 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 14398001 14472000 0 0 Deletion 73999 LOC_Os12g25080 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr12 14398001 14472000 0 0 Deletion 73999 LOC_Os12g25090 expressed protein FN3028-S Chr12 14398001 14472000 0 0 Deletion 73999 LOC_Os12g25100 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr12 14398001 14472000 0 0 Deletion 73999 LOC_Os12g25110 expressed protein FN3028-S Chr12 14398001 14472000 0 0 Deletion 73999 LOC_Os12g25120 core histone H2A/H2B/H3/H4, putative, expressed FN3028-S Chr12 14398001 14472000 0 0 Deletion 73999 LOC_Os12g25130 CRP8 - Cysteine-rich family protein precursor, expressed FN3028-S Chr12 14398001 14472000 0 0 Deletion 73999 LOC_Os12g25140 hypothetical protein FN3028-S Chr12 14398001 14472000 0 0 Deletion 73999 LOC_Os12g25150 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 14398001 14472000 0 0 Deletion 73999 LOC_Os12g25160 MATE, putative, expressed FN3028-S Chr12 14398001 14472000 0 0 Deletion 73999 LOC_Os12g25170 NB-ARC domain containing disease resistance protein, putative, expressed FN3028-S Chr12 14398001 14472000 0 0 Deletion 73999 LOC_Os12g25180 expressed protein FN3028-S Chr12 14398001 14472000 0 0 Deletion 73999 LOC_Os12g25190 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr12 14398001 14472000 0 0 Deletion 73999 LOC_Os12g25250 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr12 14519001 14563000 0 0 Deletion 43999 LOC_Os12g25260 expressed protein FN3028-S Chr12 14519001 14563000 0 0 Deletion 43999 LOC_Os12g25280 expressed protein FN3028-S Chr12 14519001 14563000 0 0 Deletion 43999 LOC_Os12g25290 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr12 14519001 14563000 0 0 Deletion 43999 LOC_Os12g25300 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr12 14519001 14563000 0 0 Deletion 43999 LOC_Os12g26100 hypothetical protein FN3028-S Chr12 14932153 14932154 0 0 Deletion 1 upstream_gene_variant HET FN3028-S Chr12 15179001 15312000 0 0 Deletion 132999 LOC_Os12g26110 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr12 15179001 15312000 0 0 Deletion 132999 LOC_Os12g26120 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr12 15179001 15312000 0 0 Deletion 132999 LOC_Os12g26140 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 15179001 15312000 0 0 Deletion 132999 LOC_Os12g26150 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 15179001 15312000 0 0 Deletion 132999 LOC_Os12g26160 expressed protein FN3028-S Chr12 15179001 15312000 0 0 Deletion 132999 LOC_Os12g26170 expressed protein FN3028-S Chr12 15179001 15312000 0 0 Deletion 132999 LOC_Os12g26180 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 15179001 15312000 0 0 Deletion 132999 LOC_Os12g26190 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 15179001 15312000 0 0 Deletion 132999 LOC_Os12g26204 transposon protein, putative, unclassified, expressed FN3028-S Chr12 15179001 15312000 0 0 Deletion 132999 LOC_Os12g26220 expressed protein FN3028-S Chr12 15179001 15312000 0 0 Deletion 132999 LOC_Os12g26240 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 15179001 15312000 0 0 Deletion 132999 LOC_Os12g26250 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 15179001 15312000 0 0 Deletion 132999 LOC_Os12g26260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 15179001 15312000 0 0 Deletion 132999 LOC_Os12g26290 alpha-DOX2, putative, expressed FN3028-S Chr12 15331001 15380000 0 0 Deletion 48999 LOC_Os12g26290 alpha-DOX2, putative, expressed FN3028-S Chr12 15331001 15380000 0 0 Deletion 48999 LOC_Os12g26300 expressed protein FN3028-S Chr12 15331001 15380000 0 0 Deletion 48999 LOC_Os12g26310 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 15331001 15380000 0 0 Deletion 48999 LOC_Os12g26320 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr12 15331001 15380000 0 0 Deletion 48999 LOC_Os12g26330 expressed protein FN3028-S Chr12 15539770 15539772 0 0 Deletion 2 intergenic_region HET FN3028-S Chr12 15858001 15893000 0 0 Deletion 34999 LOC_Os12g27090 expressed protein FN3028-S Chr12 15858001 15893000 0 0 Deletion 34999 LOC_Os12g27096 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr12 15878861 15878861 0 0 Insertion 39 downstream_gene_variant HET FN3028-S Chr12 15952001 15971000 0 0 Deletion 18999 LOC_Os12g27200 expressed protein FN3028-S Chr12 15952001 15971000 0 0 Deletion 18999 LOC_Os12g27210 expressed protein FN3028-S Chr12 15952001 15971000 0 0 Deletion 18999 LOC_Os12g27220 transferase family protein, putative, expressed FN3028-S Chr12 15952001 15971000 0 0 Deletion 18999 LOC_Os12g27390 transposon protein, putative, unclassified, expressed FN3028-S Chr12 16084999 Chr6 5454600 0 Translocation 0 FN3028-S Chr12 16107001 16149000 0 0 Deletion 41999 LOC_Os12g27400 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr12 16107001 16149000 0 0 Deletion 41999 LOC_Os12g27410 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 16107001 16149000 0 0 Deletion 41999 LOC_Os12g27420 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 16107001 16149000 0 0 Deletion 41999 LOC_Os12g27430 expressed protein FN3028-S Chr12 16107001 16149000 0 0 Deletion 41999 LOC_Os12g27440 expressed protein FN3028-S Chr12 16107001 16149000 0 0 Deletion 41999 LOC_Os12g27690 expressed protein FN3028-S Chr12 16334001 16383000 0 0 Deletion 48999 LOC_Os12g27710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 16334001 16383000 0 0 Deletion 48999 LOC_Os12g27720 hypothetical protein FN3028-S Chr12 16334001 16383000 0 0 Deletion 48999 LOC_Os12g27730 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr12 16334001 16383000 0 0 Deletion 48999 LOC_Os12g27740 expressed protein FN3028-S Chr12 16334001 16383000 0 0 Deletion 48999 LOC_Os12g27750 OsFBX441 - F-box domain containing protein, expressed FN3028-S Chr12 16334001 16383000 0 0 Deletion 48999 LOC_Os12g27760 OsFBX442 - F-box domain containing protein, expressed FN3028-S Chr12 16334001 16383000 0 0 Deletion 48999 LOC_Os12g27770 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr12 16334001 16383000 0 0 Deletion 48999 LOC_Os12g27780 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr12 16334001 16383000 0 0 Deletion 48999 LOC_Os12g27790 OsFBX443 - F-box domain containing protein, expressed FN3028-S Chr12 16392001 16426000 0 0 Deletion 33999 LOC_Os12g27820 hypothetical protein FN3028-S Chr12 16392001 16426000 0 0 Deletion 33999 LOC_Os12g27830 dehydrogenase/reductase, putative, expressed FN3028-S Chr12 16392001 16426000 0 0 Deletion 33999 LOC_Os12g27840 expressed protein FN3028-S Chr12 16392001 16426000 0 0 Deletion 33999 LOC_Os12g27850 LGC1, putative, expressed FN3028-S Chr12 16392001 16426000 0 0 Deletion 33999 LOC_Os12g27860 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 16392001 16426000 0 0 Deletion 33999 LOC_Os12g27910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 16460001 16472000 0 0 Deletion 11999 LOC_Os12g27940 expressed protein FN3028-S Chr12 16460001 16472000 0 0 Deletion 11999 LOC_Os12g28270 amidohydrolase, putative, expressed FN3028-S Chr12 1712001 1730000 0 0 Deletion 17999 LOC_Os12g04080 transferase family protein, putative, expressed FN3028-S Chr12 1712001 1730000 0 0 Deletion 17999 LOC_Os12g04090 zinc finger, C3HC4 type domain containing protein FN3028-S Chr12 1712001 1730000 0 0 Deletion 17999 LOC_Os12g04100 cytochrome P450, putative, expressed FN3028-S Chr12 1712001 1730000 0 0 Deletion 17999 LOC_Os12g04110 pentatricopeptide, putative, expressed FN3028-S Chr12 1712001 1730000 0 0 Deletion 17999 LOC_Os12g04120 phosphoglycerate mutase, putative, expressed FN3028-S Chr12 1712001 1730000 0 0 Deletion 17999 LOC_Os12g05830 transporter-related, putative, expressed FN3028-S Chr12 18163001 18186000 0 0 Deletion 22999 LOC_Os12g30280 retrotransposon protein, putative, unclassified FN3028-S Chr12 18163001 18186000 0 0 Deletion 22999 LOC_Os12g30290 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 18163001 18186000 0 0 Deletion 22999 LOC_Os12g30310 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr12 18163001 18186000 0 0 Deletion 22999 LOC_Os12g30440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr12 19259329 Chr5 22122063 0 Translocation 0 FN3028-S Chr12 19334001 19422000 0 0 Deletion 87999 LOC_Os12g32060 expressed protein FN3028-S Chr12 19334001 19422000 0 0 Deletion 87999 LOC_Os12g32080 expressed protein FN3028-S Chr12 19334001 19422000 0 0 Deletion 87999 LOC_Os12g32090 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr12 19334001 19422000 0 0 Deletion 87999 LOC_Os12g32110 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr12 19334001 19422000 0 0 Deletion 87999 LOC_Os12g32120 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr12 19334001 19422000 0 0 Deletion 87999 LOC_Os12g32130 trehalose phosphatase, putative, expressed FN3028-S Chr12 19334001 19422000 0 0 Deletion 87999 LOC_Os12g32140 transposon protein, putative, unclassified, expressed FN3028-S Chr12 19334001 19422000 0 0 Deletion 87999 LOC_Os12g32150 expressed protein FN3028-S Chr12 19334001 19422000 0 0 Deletion 87999 LOC_Os12g32160 expressed protein FN3028-S Chr12 19334001 19422000 0 0 Deletion 87999 LOC_Os12g32170 expressed protein FN3028-S Chr12 19604001 19622000 0 0 Deletion 17999 LOC_Os12g32499 expressed protein FN3028-S Chr12 19604001 19622000 0 0 Deletion 17999 LOC_Os12g33590 hypothetical protein FN3028-S Chr12 20290001 20311000 0 0 Deletion 20999 LOC_Os12g33600 expressed protein FN3028-S Chr12 20290001 20311000 0 0 Deletion 20999 LOC_Os12g33610 phenylalanine ammonia-lyase, putative, expressed FN3028-S Chr12 20290001 20311000 0 0 Deletion 20999 LOC_Os12g33620 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr12 20290001 20311000 0 0 Deletion 20999 LOC_Os12g33630 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr12 20290001 20311000 0 0 Deletion 20999 LOC_Os12g33640 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr12 20290001 20311000 0 0 Deletion 20999 LOC_Os12g33650 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 20290001 20311000 0 0 Deletion 20999 LOC_Os12g33910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 20435001 20452000 0 0 Deletion 16999 LOC_Os12g33920 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr12 20435001 20452000 0 0 Deletion 16999 LOC_Os12g34790 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr12 21113001 21128000 0 0 Deletion 14999 LOC_Os12g34990 hydrolase, putative, expressed FN3028-S Chr12 21295001 21307000 0 0 Deletion 11999 LOC_Os12g35000 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 21295001 21307000 0 0 Deletion 11999 LOC_Os12g35440 expressed protein FN3028-S Chr12 21678506 21678530 0 0 Deletion 24 start_lost&disruptive_inframe_deletion HET LOC_Os12g35650 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr12 21734001 21765000 0 0 Deletion 30999 LOC_Os12g35720 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr12 21734001 21765000 0 0 Deletion 30999 LOC_Os12g35730 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr12 21734001 21765000 0 0 Deletion 30999 LOC_Os12g35740 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr12 21790001 21838000 0 0 Deletion 47999 LOC_Os12g35810 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr12 21790001 21838000 0 0 Deletion 47999 LOC_Os12g35820 expressed protein FN3028-S Chr12 21790001 21838000 0 0 Deletion 47999 LOC_Os12g35830 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr12 21790001 21838000 0 0 Deletion 47999 LOC_Os12g35890 FAD dependent oxidoreductase domain containing protein, expressed FN3028-S Chr12 21865001 21926000 0 0 Deletion 60999 LOC_Os12g35895 expressed protein FN3028-S Chr12 21865001 21926000 0 0 Deletion 60999 LOC_Os12g35900 transposon protein, putative, Pong sub-class FN3028-S Chr12 21865001 21926000 0 0 Deletion 60999 LOC_Os12g35910 expressed protein FN3028-S Chr12 21865001 21926000 0 0 Deletion 60999 LOC_Os12g35920 expressed protein FN3028-S Chr12 21865001 21926000 0 0 Deletion 60999 LOC_Os12g36720 RGH1A, putative, expressed FN3028-S Chr12 22020001 22039000 0 0 Deletion 18999 FN3028-S Chr12 22489001 22505000 0 0 Deletion 15999 LOC_Os12g36730 stripe rust resistance protein Yr10, putative, expressed FN3028-S Chr12 22489001 22505000 0 0 Deletion 15999 LOC_Os12g36810 polygalacturonase, putative, expressed FN3028-S Chr12 22576001 22595000 0 0 Deletion 18999 LOC_Os12g36820 expressed protein FN3028-S Chr12 22576001 22595000 0 0 Deletion 18999 LOC_Os12g36830 pathogenesis-related Bet v I family protein, putative, expressed FN3028-S Chr12 22576001 22595000 0 0 Deletion 18999 LOC_Os12g36840 pathogenesis-related Bet v I family protein, putative, expressed FN3028-S Chr12 22576001 22595000 0 0 Deletion 18999 LOC_Os12g36850 pathogenesis-related Bet v I family protein, putative, expressed FN3028-S Chr12 22576001 22595000 0 0 Deletion 18999 LOC_Os12g37030 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr12 24129001 24139000 0 0 Deletion 9999 LOC_Os12g39200 seed maturation protein PM23, putative, expressed FN3028-S Chr12 24129001 24139000 0 0 Deletion 9999 LOC_Os12g39430 expressed protein FN3028-S Chr12 24257001 24374000 0 0 Deletion 116999 LOC_Os12g39440 expressed protein FN3028-S Chr12 24257001 24374000 0 0 Deletion 116999 LOC_Os12g39450 expressed protein FN3028-S Chr12 24257001 24374000 0 0 Deletion 116999 LOC_Os12g39460 hypothetical protein FN3028-S Chr12 24257001 24374000 0 0 Deletion 116999 LOC_Os12g39470 hypothetical protein FN3028-S Chr12 24257001 24374000 0 0 Deletion 116999 LOC_Os12g39480 expressed protein FN3028-S Chr12 24257001 24374000 0 0 Deletion 116999 LOC_Os12g39490 retrotransposon protein, putative, unclassified FN3028-S Chr12 24257001 24374000 0 0 Deletion 116999 LOC_Os12g39510 hypothetical protein FN3028-S Chr12 24257001 24374000 0 0 Deletion 116999 LOC_Os12g39520 OsFBDUF66 - F-box and DUF domain containing protein, expressed FN3028-S Chr12 24257001 24374000 0 0 Deletion 116999 LOC_Os12g39530 hypothetical protein FN3028-S Chr12 24257001 24374000 0 0 Deletion 116999 LOC_Os12g39540 transposon protein, putative, Ac/Ds sub-class FN3028-S Chr12 24257001 24374000 0 0 Deletion 116999 LOC_Os12g39550 hypothetical protein FN3028-S Chr12 24387001 24404000 0 0 Deletion 16999 LOC_Os12g39560 expressed protein FN3028-S Chr12 24387001 24404000 0 0 Deletion 16999 LOC_Os12g39570 transposon protein, putative, unclassified, expressed FN3028-S Chr12 24387001 24404000 0 0 Deletion 16999 LOC_Os12g39580 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 24425001 24447000 0 0 Deletion 21999 LOC_Os12g39590 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 24425001 24447000 0 0 Deletion 21999 LOC_Os12g39600 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 24425001 24447000 0 0 Deletion 21999 LOC_Os12g39610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 24887001 24900000 0 0 Deletion 12999 LOC_Os12g40220 hypothetical protein FN3028-S Chr12 24887001 24900000 0 0 Deletion 12999 LOC_Os12g41970 lipase class 3 family protein, putative, expressed FN3028-S Chr12 25928418 25928418 0 0 Insertion 1 upstream_gene_variant HET FN3028-S Chr12 26236001 26266000 0 0 Deletion 29999 FN3028-S Chr12 2688001 2711000 0 0 Deletion 22999 LOC_Os12g05840 Cupin domain containing protein, expressed FN3028-S Chr12 2688001 2711000 0 0 Deletion 22999 LOC_Os12g05860 Cupin domain containing protein, expressed FN3028-S Chr12 2688001 2711000 0 0 Deletion 22999 LOC_Os12g05870 Cupin domain containing protein, expressed FN3028-S Chr12 2688001 2711000 0 0 Deletion 22999 LOC_Os12g05880 Cupin domain containing protein, expressed FN3028-S Chr12 2688001 2711000 0 0 Deletion 22999 LOC_Os12g05890 expressed protein FN3028-S Chr12 2688001 2711000 0 0 Deletion 22999 LOC_Os12g05900 rhoGAP domain containing protein, expressed FN3028-S Chr12 2688001 2711000 0 0 Deletion 22999 LOC_Os12g05960 expressed protein FN3028-S Chr12 2745001 2762000 0 0 Deletion 16999 LOC_Os12g05970 expressed protein FN3028-S Chr12 2745001 2762000 0 0 Deletion 16999 LOC_Os12g05980 DUF584 domain containing protein, putative, expressed FN3028-S Chr12 2745001 2762000 0 0 Deletion 16999 LOC_Os12g06490 STE_PAK_Ste20_Slob_Wnk.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed FN3028-S Chr12 3132001 3151000 0 0 Deletion 18999 LOC_Os12g06510 calcineurin B, putative, expressed FN3028-S Chr12 3132001 3151000 0 0 Deletion 18999 LOC_Os12g06910 nucleolar protein family 6, putative, expressed FN3028-S Chr12 3366001 3387000 0 0 Deletion 20999 LOC_Os12g06920 NBS-LRR disease resistance protein, putative, expressed FN3028-S Chr12 3366001 3387000 0 0 Deletion 20999 LOC_Os12g06930 expressed protein FN3028-S Chr12 3366001 3387000 0 0 Deletion 20999 LOC_Os12g07060 chaperone protein dnaJ, putative, expressed FN3028-S Chr12 3462001 3478000 0 0 Deletion 15999 LOC_Os12g07070 hypothetical protein FN3028-S Chr12 3462001 3478000 0 0 Deletion 15999 LOC_Os12g07080 transposon protein, putative, Mutator sub-class, expressed FN3028-S Chr12 3462001 3478000 0 0 Deletion 15999 LOC_Os12g07750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 4131001 4155000 0 0 Deletion 23999 LOC_Os12g08120 expressed protein FN3028-S Chr12 4131001 4155000 0 0 Deletion 23999 LOC_Os12g08130 amino acid transporter, putative, expressed FN3028-S Chr12 4131001 4155000 0 0 Deletion 23999 LOC_Os12g08440 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 4291001 4328000 0 0 Deletion 36999 LOC_Os12g08450 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 4291001 4328000 0 0 Deletion 36999 LOC_Os12g08460 retrotransposon protein, putative, unclassified FN3028-S Chr12 4291001 4328000 0 0 Deletion 36999 LOC_Os12g08470 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 4291001 4328000 0 0 Deletion 36999 LOC_Os12g08480 expressed protein FN3028-S Chr12 4291001 4328000 0 0 Deletion 36999 LOC_Os12g08490 transposon protein, putative, unclassified, expressed FN3028-S Chr12 4291001 4328000 0 0 Deletion 36999 LOC_Os12g08500 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 4291001 4328000 0 0 Deletion 36999 LOC_Os12g08510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 4291001 4328000 0 0 Deletion 36999 LOC_Os12g08530 expressed protein FN3028-S Chr12 4291001 4328000 0 0 Deletion 36999 LOC_Os12g08960 hAT dimerisation domain-containing protein, putative, expressed FN3028-S Chr12 4684001 4776000 0 0 Deletion 91999 LOC_Os12g08970 hypothetical protein FN3028-S Chr12 4684001 4776000 0 0 Deletion 91999 LOC_Os12g08980 syntaxin-related protein KNOLLE, putative, expressed FN3028-S Chr12 4684001 4776000 0 0 Deletion 91999 LOC_Os12g08990 hypothetical protein FN3028-S Chr12 4684001 4776000 0 0 Deletion 91999 LOC_Os12g09000 phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase, putative, expressed FN3028-S Chr12 4684001 4776000 0 0 Deletion 91999 LOC_Os12g09010 expressed protein FN3028-S Chr12 4684001 4776000 0 0 Deletion 91999 LOC_Os12g09020 retrotransposon protein, putative, unclassified FN3028-S Chr12 4684001 4776000 0 0 Deletion 91999 LOC_Os12g09030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 4684001 4776000 0 0 Deletion 91999 LOC_Os12g09050 hypothetical protein FN3028-S Chr12 4684001 4776000 0 0 Deletion 91999 LOC_Os12g09060 trehalose phosphatase, putative FN3028-S Chr12 4684001 4776000 0 0 Deletion 91999 LOC_Os12g09070 expressed protein FN3028-S Chr12 4684001 4776000 0 0 Deletion 91999 LOC_Os12g09080 brevis radix, putative, expressed FN3028-S Chr12 4684001 4776000 0 0 Deletion 91999 LOC_Os12g09089 protein kinase PKN/PRK1, effector, putative, expressed FN3028-S Chr12 4684001 4776000 0 0 Deletion 91999 LOC_Os12g09120 mRNA-capping enzyme, putative, expressed FN3028-S Chr12 4684001 4776000 0 0 Deletion 91999 LOC_Os12g09130 expressed protein FN3028-S Chr12 5120001 5147000 0 0 Deletion 26999 LOC_Os12g09720 dirigent, putative, expressed FN3028-S Chr12 5120001 5147000 0 0 Deletion 26999 LOC_Os12g09739 pollen signalling protein with adenylyl cyclase activity, putative, expressed FN3028-S Chr12 5120001 5147000 0 0 Deletion 26999 LOC_Os12g09900 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr12 5247001 5272000 0 0 Deletion 24999 LOC_Os12g09910 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr12 5247001 5272000 0 0 Deletion 24999 LOC_Os12g09920 retrotransposon protein, putative, unclassified FN3028-S Chr12 5247001 5272000 0 0 Deletion 24999 LOC_Os12g09930 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 5247001 5272000 0 0 Deletion 24999 LOC_Os12g09940 retrotransposon protein, putative, unclassified FN3028-S Chr12 5247001 5272000 0 0 Deletion 24999 LOC_Os12g09954 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr12 5247001 5272000 0 0 Deletion 24999 LOC_Os12g09970 retrotransposon protein, putative, unclassified FN3028-S Chr12 5247001 5272000 0 0 Deletion 24999 LOC_Os12g09990 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 5279001 5313000 0 0 Deletion 33999 LOC_Os12g10000 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 5279001 5313000 0 0 Deletion 33999 LOC_Os12g10010 expressed protein FN3028-S Chr12 5279001 5313000 0 0 Deletion 33999 LOC_Os12g10020 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 5279001 5313000 0 0 Deletion 33999 LOC_Os12g10030 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 5279001 5313000 0 0 Deletion 33999 LOC_Os12g10170 O-methyltransferase, putative, expressed FN3028-S Chr12 5373001 5403000 0 0 Deletion 29999 LOC_Os12g10180 NBS-LRR type disease resistance protein Rps1-k-2, putative, expressed FN3028-S Chr12 5373001 5403000 0 0 Deletion 29999 LOC_Os12g10184 pentatricopeptide, putative, expressed FN3028-S Chr12 5373001 5403000 0 0 Deletion 29999 LOC_Os12g10190 transposon protein, putative, unclassified, expressed FN3028-S Chr12 5373001 5403000 0 0 Deletion 29999 LOC_Os12g10200 SAM-dependent methyltransferase, putative, expressed FN3028-S Chr12 5373001 5403000 0 0 Deletion 29999 LOC_Os12g10210 hypothetical protein FN3028-S Chr12 5373001 5403000 0 0 Deletion 29999 LOC_Os12g10220 expressed protein FN3028-S Chr12 5373001 5403000 0 0 Deletion 29999 LOC_Os12g10230 expressed protein FN3028-S Chr12 5373001 5403000 0 0 Deletion 29999 LOC_Os12g12310 retrotransposon protein, putative, unclassified FN3028-S Chr12 6765001 6787000 0 0 Deletion 21999 LOC_Os12g12320 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 6765001 6787000 0 0 Deletion 21999 LOC_Os12g12330 retrotransposon protein, putative, unclassified FN3028-S Chr12 6765001 6787000 0 0 Deletion 21999 LOC_Os12g12340 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 6765001 6787000 0 0 Deletion 21999 LOC_Os12g12460 hypothetical protein FN3028-S Chr12 6930001 6944000 0 0 Deletion 13999 LOC_Os12g12990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr12 7195001 7216000 0 0 Deletion 20999 LOC_Os12g13000 expressed protein FN3028-S Chr12 7195001 7216000 0 0 Deletion 20999 LOC_Os12g13010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr12 7195001 7216000 0 0 Deletion 20999 LOC_Os12g13220 hypothetical protein FN3028-S Chr12 7360001 7377000 0 0 Deletion 16999 LOC_Os12g13230 expressed protein FN3028-S Chr12 7360001 7377000 0 0 Deletion 16999 LOC_Os12g13240 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 7360001 7377000 0 0 Deletion 16999 LOC_Os12g13250 expressed protein FN3028-S Chr12 7360001 7377000 0 0 Deletion 16999 LOC_Os12g13260 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 7360001 7377000 0 0 Deletion 16999 LOC_Os12g13270 expressed protein FN3028-S Chr12 7360001 7377000 0 0 Deletion 16999 LOC_Os12g13800 O-methyltransferase, putative, expressed FN3028-S Chr12 743001 763000 0 0 Deletion 19999 LOC_Os12g02340 LTPL14 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3028-S Chr12 743001 763000 0 0 Deletion 19999 LOC_Os12g03010 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 7802001 7822000 0 0 Deletion 19999 LOC_Os12g13810 caffeic acid 3-O-methyltransferase, putative, expressed FN3028-S Chr12 7802001 7822000 0 0 Deletion 19999 LOC_Os12g13824 expressed protein FN3028-S Chr12 7802001 7822000 0 0 Deletion 19999 LOC_Os12g14260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 8110001 8194000 0 0 Deletion 83999 LOC_Os12g14260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 8110001 8194000 0 0 Deletion 83999 LOC_Os12g14270 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 8110001 8194000 0 0 Deletion 83999 LOC_Os12g14280 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 8110001 8194000 0 0 Deletion 83999 LOC_Os12g14290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 8110001 8194000 0 0 Deletion 83999 LOC_Os12g14310 expressed protein FN3028-S Chr12 8110001 8194000 0 0 Deletion 83999 LOC_Os12g14320 expressed protein FN3028-S Chr12 8110001 8194000 0 0 Deletion 83999 LOC_Os12g14330 disease resistance protein RPM1, putative, expressed FN3028-S Chr12 8110001 8194000 0 0 Deletion 83999 LOC_Os12g14340 hypothetical protein FN3028-S Chr12 8110001 8194000 0 0 Deletion 83999 LOC_Os12g14350 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr12 8110001 8194000 0 0 Deletion 83999 LOC_Os12g14360 transposon protein, putative, unclassified, expressed FN3028-S Chr12 8269001 8288000 0 0 Deletion 18999 LOC_Os12g14490 retrotransposon protein, putative, unclassified FN3028-S Chr12 8269001 8288000 0 0 Deletion 18999 LOC_Os12g14500 expressed protein FN3028-S Chr12 8269001 8288000 0 0 Deletion 18999 LOC_Os12g14510 expressed protein FN3028-S Chr12 8269001 8288000 0 0 Deletion 18999 LOC_Os12g14630 retrotransposon protein, putative, LINE subclass, expressed FN3028-S Chr12 8353001 8379000 0 0 Deletion 25999 LOC_Os12g14640 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr12 8353001 8379000 0 0 Deletion 25999 LOC_Os12g14650 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr12 8353001 8379000 0 0 Deletion 25999 LOC_Os12g16140 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 9214001 9245000 0 0 Deletion 30999 LOC_Os12g16140 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 9214001 9245000 0 0 Deletion 30999 LOC_Os12g16150 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 9214001 9245000 0 0 Deletion 30999 LOC_Os12g16160 CCT motif family protein, expressed FN3028-S Chr12 9214001 9245000 0 0 Deletion 30999 LOC_Os12g16170 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 9262001 9315000 0 0 Deletion 52999 LOC_Os12g16210 zinc finger family protein, putative, expressed FN3028-S Chr12 9262001 9315000 0 0 Deletion 52999 LOC_Os12g16220 nmrA-like family domain containing protein, expressed FN3028-S Chr12 9262001 9315000 0 0 Deletion 52999 LOC_Os12g16230 exostosin, putative, expressed FN3028-S Chr12 9262001 9315000 0 0 Deletion 52999 LOC_Os12g16240 nmrA-like family domain containing protein, expressed FN3028-S Chr12 9262001 9315000 0 0 Deletion 52999 LOC_Os12g16250 nmrA-like family domain containing protein, expressed FN3028-S Chr12 9262001 9315000 0 0 Deletion 52999 LOC_Os12g16260 expressed protein FN3028-S Chr12 9262001 9315000 0 0 Deletion 52999 LOC_Os12g16280 expressed protein FN3028-S Chr12 9262001 9315000 0 0 Deletion 52999 LOC_Os12g16780 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr12 9618001 9649000 0 0 Deletion 30999 LOC_Os12g16790 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr12 9618001 9649000 0 0 Deletion 30999 LOC_Os12g16800 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 9618001 9649000 0 0 Deletion 30999 LOC_Os12g16810 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 9618001 9649000 0 0 Deletion 30999 LOC_Os12g16820 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr12 9618001 9649000 0 0 Deletion 30999 LOC_Os12g16830 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 9618001 9649000 0 0 Deletion 30999 LOC_Os12g17290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 9898001 9918000 0 0 Deletion 19999 LOC_Os12g17300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr12 9898001 9918000 0 0 Deletion 19999 LOC_Os12g17310 prefoldin, putative, expressed FN3028-S Chr12 9898001 9918000 0 0 Deletion 19999 LOC_Os12g17320 polyprenyl synthetase, putative, expressed FN3028-S Chr12 9898001 9918000 0 0 Deletion 19999 LOC_Os12g18060 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr2 10153001 10185000 0 0 Deletion 31999 LOC_Os02g17650 tocopherol cyclase, chloroplast precursor, putative, expressed FN3028-S Chr2 10153001 10185000 0 0 Deletion 31999 LOC_Os02g17660 expressed protein FN3028-S Chr2 10153001 10185000 0 0 Deletion 31999 LOC_Os02g17670 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 10153001 10185000 0 0 Deletion 31999 LOC_Os02g17680 ethylene-responsive protein related, putative, expressed FN3028-S Chr2 10153001 10185000 0 0 Deletion 31999 LOC_Os02g18510 stripe rust resistance protein Yr10, putative, expressed FN3028-S Chr2 10780001 10790000 0 0 Deletion 9999 LOC_Os02g18515 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 10780001 10790000 0 0 Deletion 9999 LOC_Os02g18860 hypothetical protein FN3028-S Chr2 11008001 11029000 0 0 Deletion 20999 LOC_Os02g18870 GDSL-like lipase/acylhydrolase, putative, expressed FN3028-S Chr2 11008001 11029000 0 0 Deletion 20999 LOC_Os02g18880 calcineurin B, putative, expressed FN3028-S Chr2 11008001 11029000 0 0 Deletion 20999 LOC_Os02g18890 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 11008001 11029000 0 0 Deletion 20999 LOC_Os02g19260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr2 1105001 1116000 0 0 Deletion 10999 LOC_Os02g03330 expressed protein FN3028-S Chr2 11247001 11288000 0 0 Deletion 40999 LOC_Os02g19270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr2 11247001 11288000 0 0 Deletion 40999 LOC_Os02g19280 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 11247001 11288000 0 0 Deletion 40999 LOC_Os02g19290 expressed protein FN3028-S Chr2 11247001 11288000 0 0 Deletion 40999 LOC_Os02g19300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr2 11247001 11288000 0 0 Deletion 40999 LOC_Os02g19310 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr2 11654001 11680000 0 0 Deletion 25999 LOC_Os02g19860 pre-mRNA-splicing factor ATP-dependent RNA helicase, putative, expressed FN3028-S Chr2 11654001 11680000 0 0 Deletion 25999 LOC_Os02g20090 retrotransposon protein, putative, unclassified FN3028-S Chr2 12155001 12182000 0 0 Deletion 26999 LOC_Os02g20640 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 12155001 12182000 0 0 Deletion 26999 LOC_Os02g20650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr2 12155001 12182000 0 0 Deletion 26999 LOC_Os02g20660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr2 12155001 12182000 0 0 Deletion 26999 LOC_Os02g20670 retrotransposon protein, putative, unclassified FN3028-S Chr2 12155001 12182000 0 0 Deletion 26999 LOC_Os02g20980 expressed protein FN3028-S Chr2 12419001 12454000 0 0 Deletion 34999 LOC_Os02g20990 expressed protein FN3028-S Chr2 12419001 12454000 0 0 Deletion 34999 LOC_Os02g21009 sodium/calcium exchanger protein, putative, expressed FN3028-S Chr2 12419001 12454000 0 0 Deletion 34999 LOC_Os02g21510 NOL1/NOP2/sun family protein, putative, expressed FN3028-S Chr2 12757001 12837000 0 0 Deletion 79999 LOC_Os02g21510 NOL1/NOP2/sun family protein, putative, expressed FN3028-S Chr2 12757001 12837000 0 0 Deletion 79999 LOC_Os02g21520 chalcone isomerase 3, putative, expressed FN3028-S Chr2 12757001 12837000 0 0 Deletion 79999 LOC_Os02g21530 expressed protein FN3028-S Chr2 12757001 12837000 0 0 Deletion 79999 LOC_Os02g21540 expressed protein FN3028-S Chr2 12757001 12837000 0 0 Deletion 79999 LOC_Os02g21550 flavonol synthase/flavanone 3-hydroxylase, putative, expressed FN3028-S Chr2 12757001 12837000 0 0 Deletion 79999 LOC_Os02g21560 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 12757001 12837000 0 0 Deletion 79999 LOC_Os02g21570 expressed protein FN3028-S Chr2 12757001 12837000 0 0 Deletion 79999 LOC_Os02g21580 PPR repeat containing protein, expressed FN3028-S Chr2 12757001 12837000 0 0 Deletion 79999 LOC_Os02g21590 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr2 12757001 12837000 0 0 Deletion 79999 LOC_Os02g21600 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr2 12757001 12837000 0 0 Deletion 79999 LOC_Os02g21610 retrotransposon protein, putative, unclassified FN3028-S Chr2 1345001 1375000 0 0 Deletion 29999 LOC_Os02g03340 RNA polymerase II transcription factor B subunit 4, putative, expressed FN3028-S Chr2 1345001 1375000 0 0 Deletion 29999 LOC_Os02g03350 transposon protein, putative, unclassified, expressed FN3028-S Chr2 1345001 1375000 0 0 Deletion 29999 LOC_Os02g03360 expressed protein FN3028-S Chr2 1345001 1375000 0 0 Deletion 29999 LOC_Os02g03370 expressed protein FN3028-S Chr2 1345001 1375000 0 0 Deletion 29999 LOC_Os02g03380 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 1345001 1375000 0 0 Deletion 29999 LOC_Os02g03490 major ampullate spidroin 3, putative, expressed FN3028-S Chr2 13506001 13566000 0 0 Deletion 59999 LOC_Os02g22690 retrotransposon, putative, centromere-specific FN3028-S Chr2 13506001 13566000 0 0 Deletion 59999 LOC_Os02g22700 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr2 13506001 13566000 0 0 Deletion 59999 LOC_Os02g22710 expressed protein FN3028-S Chr2 13506001 13566000 0 0 Deletion 59999 LOC_Os02g22720 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 13506001 13566000 0 0 Deletion 59999 LOC_Os02g22730 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 13506001 13566000 0 0 Deletion 59999 LOC_Os02g22740 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 13506001 13566000 0 0 Deletion 59999 LOC_Os02g22750 expressed protein FN3028-S Chr2 13506001 13566000 0 0 Deletion 59999 LOC_Os02g22760 retrotransposon protein, putative, LINE subclass, expressed FN3028-S Chr2 13506001 13566000 0 0 Deletion 59999 LOC_Os02g22770 expressed protein FN3028-S Chr2 13506001 13566000 0 0 Deletion 59999 LOC_Os02g22780 T-complex protein, putative, expressed FN3028-S Chr2 13819001 13830000 0 0 Deletion 10999 FN3028-S Chr2 13853001 13884000 0 0 Deletion 30999 LOC_Os02g23910 expressed protein FN3028-S Chr2 13853001 13884000 0 0 Deletion 30999 LOC_Os02g23920 hypothetical protein FN3028-S Chr2 13853001 13884000 0 0 Deletion 30999 LOC_Os02g23930 expressed protein FN3028-S Chr2 13853001 13884000 0 0 Deletion 30999 LOC_Os02g23939 expressed protein FN3028-S Chr2 13853001 13884000 0 0 Deletion 30999 LOC_Os02g23950 transposon protein, putative, Pong sub-class, expressed FN3028-S Chr2 13853001 13884000 0 0 Deletion 30999 LOC_Os02g24134 Sec1 family transport protein, putative, expressed FN3028-S Chr2 13987001 14003000 0 0 Deletion 15999 LOC_Os02g24150 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 13987001 14003000 0 0 Deletion 15999 LOC_Os02g24155 retrotransposon protein, putative, unclassified FN3028-S Chr2 13987001 14003000 0 0 Deletion 15999 LOC_Os02g24170 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 13987001 14003000 0 0 Deletion 15999 LOC_Os02g24770 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr2 1419001 1438000 0 0 Deletion 18999 LOC_Os02g03500 expressed protein FN3028-S Chr2 1419001 1438000 0 0 Deletion 18999 LOC_Os02g03510 fibroin heavy chain precursor, putative, expressed FN3028-S Chr2 1419001 1438000 0 0 Deletion 18999 LOC_Os02g03520 THION25 - Plant thionin family protein precursor, expressed FN3028-S Chr2 1419001 1438000 0 0 Deletion 18999 LOC_Os02g03530 PPR repeat domain containing protein, putative, expressed FN3028-S Chr2 1419001 1438000 0 0 Deletion 18999 LOC_Os02g03540 phosphoribosyl transferase, putative, expressed FN3028-S Chr2 1419001 1438000 0 0 Deletion 18999 LOC_Os02g03840 expressed protein FN3028-S Chr2 14632001 14662000 0 0 Deletion 29999 LOC_Os02g25180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr2 14632001 14662000 0 0 Deletion 29999 LOC_Os02g25190 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr2 14632001 14662000 0 0 Deletion 29999 LOC_Os02g25200 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr2 14632001 14662000 0 0 Deletion 29999 LOC_Os02g25210 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr2 14632001 14662000 0 0 Deletion 29999 LOC_Os02g25250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr2 14700001 14775000 0 0 Deletion 74999 LOC_Os02g25250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr2 14700001 14775000 0 0 Deletion 74999 LOC_Os02g25260 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 14700001 14775000 0 0 Deletion 74999 LOC_Os02g25270 expressed protein FN3028-S Chr2 14700001 14775000 0 0 Deletion 74999 LOC_Os02g25280 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr2 14700001 14775000 0 0 Deletion 74999 LOC_Os02g25290 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 14700001 14775000 0 0 Deletion 74999 LOC_Os02g25300 expressed protein FN3028-S Chr2 14700001 14775000 0 0 Deletion 74999 LOC_Os02g25310 zinc knuckle family protein, expressed FN3028-S Chr2 14700001 14775000 0 0 Deletion 74999 LOC_Os02g25320 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr2 14700001 14775000 0 0 Deletion 74999 LOC_Os02g25330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr2 14700001 14775000 0 0 Deletion 74999 LOC_Os02g25340 retrotransposon, putative, centromere-specific FN3028-S Chr2 14920001 14939000 0 0 Deletion 18999 LOC_Os02g25550 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr2 14920001 14939000 0 0 Deletion 18999 LOC_Os02g25560 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr2 14920001 14939000 0 0 Deletion 18999 LOC_Os02g25640 glutelin, putative, expressed FN3028-S Chr2 14992001 15017000 0 0 Deletion 24999 LOC_Os02g25650 expressed protein FN3028-S Chr2 14992001 15017000 0 0 Deletion 24999 LOC_Os02g25680 expressed protein FN3028-S Chr2 15032001 15069000 0 0 Deletion 36999 LOC_Os02g25690 hypothetical protein FN3028-S Chr2 15032001 15069000 0 0 Deletion 36999 LOC_Os02g25700 O-acyltransferase, putative, expressed FN3028-S Chr2 15032001 15069000 0 0 Deletion 36999 LOC_Os02g25710 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 15032001 15069000 0 0 Deletion 36999 LOC_Os02g25720 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr2 15032001 15069000 0 0 Deletion 36999 LOC_Os02g25730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr2 15032001 15069000 0 0 Deletion 36999 LOC_Os02g25740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr2 15218001 15324000 0 0 Deletion 105999 LOC_Os02g25940 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed FN3028-S Chr2 15218001 15324000 0 0 Deletion 105999 LOC_Os02g25950 transposon protein, putative, unclassified, expressed FN3028-S Chr2 15218001 15324000 0 0 Deletion 105999 LOC_Os02g25960 ankyrin repeat family protein, putative, expressed FN3028-S Chr2 15218001 15324000 0 0 Deletion 105999 LOC_Os02g25970 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 15218001 15324000 0 0 Deletion 105999 LOC_Os02g25980 hypothetical protein FN3028-S Chr2 15218001 15324000 0 0 Deletion 105999 LOC_Os02g25990 retrotransposon, putative, centromere-specific FN3028-S Chr2 15218001 15324000 0 0 Deletion 105999 LOC_Os02g26014 terpene synthase, putative, expressed FN3028-S Chr2 15218001 15324000 0 0 Deletion 105999 LOC_Os02g26040 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 15218001 15324000 0 0 Deletion 105999 LOC_Os02g26050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr2 15218001 15324000 0 0 Deletion 105999 LOC_Os02g26060 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr2 15218001 15324000 0 0 Deletion 105999 LOC_Os02g26070 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 15218001 15324000 0 0 Deletion 105999 LOC_Os02g26080 anther-specific proline-rich protein APG precursor, putative, expressed FN3028-S Chr2 15218001 15324000 0 0 Deletion 105999 LOC_Os02g26120 hypothetical protein FN3028-S Chr2 15345001 15379000 0 0 Deletion 33999 LOC_Os02g26130 hypothetical protein FN3028-S Chr2 15345001 15379000 0 0 Deletion 33999 LOC_Os02g26140 microtubule-binding protein TANGLED1, putative, expressed FN3028-S Chr2 15345001 15379000 0 0 Deletion 33999 LOC_Os02g26150 hypothetical protein FN3028-S Chr2 15345001 15379000 0 0 Deletion 33999 LOC_Os02g26160 receptor lectin kinase like protein, putative, expressed FN3028-S Chr2 15345001 15379000 0 0 Deletion 33999 LOC_Os02g26170 expressed protein FN3028-S Chr2 15345001 15379000 0 0 Deletion 33999 LOC_Os02g26180 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr2 15345001 15379000 0 0 Deletion 33999 LOC_Os02g26190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr2 15345001 15379000 0 0 Deletion 33999 LOC_Os02g26410 retrotransposon protein, putative, unclassified FN3028-S Chr2 15515001 15533000 0 0 Deletion 17999 LOC_Os02g26420 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 15515001 15533000 0 0 Deletion 17999 LOC_Os02g26430 WRKY42, expressed FN3028-S Chr2 15515001 15533000 0 0 Deletion 17999 LOC_Os02g26440 prefoldin subunit, putative, expressed FN3028-S Chr2 15515001 15533000 0 0 Deletion 17999 LOC_Os02g26450 transposon protein, putative, unclassified, expressed FN3028-S Chr2 15515001 15533000 0 0 Deletion 17999 LOC_Os02g26870 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr2 15778001 15792000 0 0 Deletion 13999 LOC_Os02g26880 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr2 15778001 15792000 0 0 Deletion 13999 LOC_Os02g26890 PPR repeat containing protein, expressed FN3028-S Chr2 15778001 15792000 0 0 Deletion 13999 LOC_Os02g26970 hypothetical protein FN3028-S Chr2 15834001 15852000 0 0 Deletion 17999 LOC_Os02g26984 expressed protein FN3028-S Chr2 15834001 15852000 0 0 Deletion 17999 LOC_Os02g27100 expressed protein FN3028-S Chr2 1628001 1650000 0 0 Deletion 21999 LOC_Os02g03850 glycosyltransferase, putative, expressed FN3028-S Chr2 1628001 1650000 0 0 Deletion 21999 LOC_Os02g03860 mitochondrial ATP synthase precursor, putative, expressed FN3028-S Chr2 1628001 1650000 0 0 Deletion 21999 LOC_Os02g03870 periplasmic beta-glucosidase precursor, putative, expressed FN3028-S Chr2 1628001 1650000 0 0 Deletion 21999 LOC_Os02g05130 expressed protein FN3028-S Chr2 16311001 16333000 0 0 Deletion 21999 LOC_Os02g27550 hypothetical protein FN3028-S Chr2 16311001 16333000 0 0 Deletion 21999 LOC_Os02g27560 expressed protein FN3028-S Chr2 16311001 16333000 0 0 Deletion 21999 LOC_Os02g27570 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 16311001 16333000 0 0 Deletion 21999 LOC_Os02g28850 Kinesin motor domain domain containing protein, expressed FN3028-S Chr2 17065001 17079000 0 0 Deletion 13999 LOC_Os02g28980 peptidyl-prolyl isomerase, putative, expressed FN3028-S Chr2 17154001 17186000 0 0 Deletion 31999 LOC_Os02g28990 expressed protein FN3028-S Chr2 17154001 17186000 0 0 Deletion 31999 LOC_Os02g29000 Cupin domain containing protein, expressed FN3028-S Chr2 17154001 17186000 0 0 Deletion 31999 LOC_Os02g29010 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 17154001 17186000 0 0 Deletion 31999 LOC_Os02g29020 Cupin domain containing protein, expressed FN3028-S Chr2 17154001 17186000 0 0 Deletion 31999 LOC_Os02g29030 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 17154001 17186000 0 0 Deletion 31999 LOC_Os02g29060 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 17213001 17231000 0 0 Deletion 17999 LOC_Os02g29070 protein kinase domain containing protein, expressed FN3028-S Chr2 17213001 17231000 0 0 Deletion 17999 LOC_Os02g29080 conserved hypothetical protein FN3028-S Chr2 17213001 17231000 0 0 Deletion 17999 LOC_Os02g29090 expressed protein FN3028-S Chr2 17213001 17231000 0 0 Deletion 17999 LOC_Os02g29230 expressed protein FN3028-S Chr2 17350001 17380000 0 0 Deletion 29999 LOC_Os02g29240 expressed protein FN3028-S Chr2 17350001 17380000 0 0 Deletion 29999 LOC_Os02g29250 expressed protein FN3028-S Chr2 17350001 17380000 0 0 Deletion 29999 LOC_Os02g29550 AP2 domain containing protein, expressed FN3028-S Chr2 18231376 18231376 0 0 Insertion 60 3_prime_UTR_variant HET FN3028-S Chr2 18353001 18364000 0 0 Deletion 10999 LOC_Os02g31110 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr2 18599001 18612000 0 0 Deletion 12999 LOC_Os02g31120 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 18599001 18612000 0 0 Deletion 12999 LOC_Os02g32860 poly synthetase 3, putative, expressed FN3028-S Chr2 19527001 19566000 0 0 Deletion 38999 LOC_Os02g32890 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr2 19527001 19566000 0 0 Deletion 38999 LOC_Os02g32900 expressed protein FN3028-S Chr2 19527001 19566000 0 0 Deletion 38999 LOC_Os02g32910 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 19527001 19566000 0 0 Deletion 38999 LOC_Os02g32920 expressed protein FN3028-S Chr2 19527001 19566000 0 0 Deletion 38999 LOC_Os02g32930 bile acid sodium symporter, putative, expressed FN3028-S Chr2 19527001 19566000 0 0 Deletion 38999 LOC_Os02g32940 expressed protein FN3028-S Chr2 19527001 19566000 0 0 Deletion 38999 LOC_Os02g32990 expressed protein FN3028-S Chr2 19810001 19858000 0 0 Deletion 47999 LOC_Os02g33360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr2 19810001 19858000 0 0 Deletion 47999 LOC_Os02g33370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr2 19810001 19858000 0 0 Deletion 47999 LOC_Os02g33380 pectinesterase inhibitor domain containing protein, putative, expressed FN3028-S Chr2 19810001 19858000 0 0 Deletion 47999 LOC_Os02g33390 pectinesterase inhibitor domain containing protein, putative, expressed FN3028-S Chr2 19810001 19858000 0 0 Deletion 47999 LOC_Os02g33400 OsFBL9 - F-box domain and LRR containing protein, expressed FN3028-S Chr2 19810001 19858000 0 0 Deletion 47999 LOC_Os02g33410 expressed protein FN3028-S Chr2 20312001 20357000 0 0 Deletion 44999 LOC_Os02g34020 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr2 20312001 20357000 0 0 Deletion 44999 LOC_Os02g34030 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 20312001 20357000 0 0 Deletion 44999 LOC_Os02g34040 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr2 20312001 20357000 0 0 Deletion 44999 LOC_Os02g34060 expressed protein FN3028-S Chr2 20312001 20357000 0 0 Deletion 44999 LOC_Os02g34120 expressed protein FN3028-S Chr2 20978312 20978323 0 0 Deletion 11 INTERGENIC HET FN3028-S Chr2 20986153 20986159 0 0 Deletion 6 UTR_5_PRIME HET FN3028-S Chr2 21200001 21220000 0 0 Deletion 19999 LOC_Os02g35280 retrotransposon protein, putative, unclassified FN3028-S Chr2 21200001 21220000 0 0 Deletion 19999 LOC_Os02g35290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr2 22107001 22141000 0 0 Deletion 33999 LOC_Os02g36619 exo70 exocyst complex subunit, putative, expressed FN3028-S Chr2 22107001 22141000 0 0 Deletion 33999 LOC_Os02g36640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr2 22107001 22141000 0 0 Deletion 33999 LOC_Os02g36650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr2 22107001 22141000 0 0 Deletion 33999 LOC_Os02g36660 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 22107001 22141000 0 0 Deletion 33999 LOC_Os02g36670 expressed protein FN3028-S Chr2 22107001 22141000 0 0 Deletion 33999 LOC_Os02g36680 expressed protein FN3028-S Chr2 22302001 22344000 0 0 Deletion 41999 LOC_Os02g36950 uncharacterized Cys-rich domain containing protein, putative, expressed FN3028-S Chr2 22302001 22344000 0 0 Deletion 41999 LOC_Os02g36960 choline transporter-related, putative, expressed FN3028-S Chr2 22302001 22344000 0 0 Deletion 41999 LOC_Os02g36974 14-3-3 protein, putative, expressed FN3028-S Chr2 22302001 22344000 0 0 Deletion 41999 LOC_Os02g36990 dynein light chain type 1 family protein, putative, expressed FN3028-S Chr2 22302001 22344000 0 0 Deletion 41999 LOC_Os02g37440 expressed protein FN3028-S Chr2 22773001 22786000 0 0 Deletion 12999 LOC_Os02g37740 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr2 22773001 22786000 0 0 Deletion 12999 LOC_Os02g37750 lecithine cholesterol acyltransferase, putative, expressed FN3028-S Chr2 22773001 22786000 0 0 Deletion 12999 LOC_Os02g37760 lecithine cholesterol acyltransferase, putative, expressed FN3028-S Chr2 22773001 22786000 0 0 Deletion 12999 LOC_Os02g37990 histamine oxidase, putative FN3028-S Chr2 22956001 22976000 0 0 Deletion 19999 LOC_Os02g38000 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 22956001 22976000 0 0 Deletion 19999 LOC_Os02g38010 copper methylamine oxidase precursor, putative, expressed FN3028-S Chr2 22956001 22976000 0 0 Deletion 19999 LOC_Os02g38020 inorganic phosphate transporter 2-1, chloroplast precursor, putative, expressed FN3028-S Chr2 22956001 22976000 0 0 Deletion 19999 LOC_Os02g38029 expressed protein FN3028-S Chr2 22956001 22976000 0 0 Deletion 19999 LOC_Os02g38520 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 23652001 23701000 0 0 Deletion 48999 LOC_Os02g39155 expressed protein FN3028-S Chr2 23652001 23701000 0 0 Deletion 48999 LOC_Os02g39160 hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed FN3028-S Chr2 23652001 23701000 0 0 Deletion 48999 LOC_Os02g39170 GDSL-like lipase/acylhydrolase, putative, expressed FN3028-S Chr2 23652001 23701000 0 0 Deletion 48999 LOC_Os02g39180 expressed protein FN3028-S Chr2 23652001 23701000 0 0 Deletion 48999 LOC_Os02g39190 expressed protein FN3028-S Chr2 23652001 23701000 0 0 Deletion 48999 LOC_Os02g39200 nucleotide-sugar transporter family protein, putative, expressed FN3028-S Chr2 23652001 23701000 0 0 Deletion 48999 LOC_Os02g39210 expressed protein FN3028-S Chr2 23652001 23701000 0 0 Deletion 48999 LOC_Os02g39220 transposon protein, putative, unclassified, expressed FN3028-S Chr2 23652001 23701000 0 0 Deletion 48999 LOC_Os02g39230 cyclin-F1-4, putative, expressed FN3028-S Chr2 23920001 23941000 0 0 Deletion 20999 FN3028-S Chr2 24149001 24173000 0 0 Deletion 23999 LOC_Os02g39940 hypothetical protein FN3028-S Chr2 24149001 24173000 0 0 Deletion 23999 LOC_Os02g39950 EF hand family protein, putative, expressed FN3028-S Chr2 24149001 24173000 0 0 Deletion 23999 LOC_Os02g39960 exostosin family protein, putative, expressed FN3028-S Chr2 24149001 24173000 0 0 Deletion 23999 LOC_Os02g39970 regulatory subunit, putative, expressed FN3028-S Chr2 24149001 24173000 0 0 Deletion 23999 LOC_Os02g41470 tRNA synthetases class II domain containing protein, expressed FN3028-S Chr2 2450001 2485000 0 0 Deletion 34999 LOC_Os02g05140 expressed protein FN3028-S Chr2 2450001 2485000 0 0 Deletion 34999 LOC_Os02g05150 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 2450001 2485000 0 0 Deletion 34999 LOC_Os02g05160 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 2450001 2485000 0 0 Deletion 34999 LOC_Os02g05170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr2 2450001 2485000 0 0 Deletion 34999 LOC_Os02g05180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr2 2450001 2485000 0 0 Deletion 34999 LOC_Os02g05190 expressed protein FN3028-S Chr2 2450001 2485000 0 0 Deletion 34999 LOC_Os02g05870 expressed protein FN3028-S Chr2 24841001 24863000 0 0 Deletion 21999 LOC_Os02g41470 tRNA synthetases class II domain containing protein, expressed FN3028-S Chr2 24841001 24863000 0 0 Deletion 21999 LOC_Os02g41480 OsWAK12 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed FN3028-S Chr2 27093001 27141000 0 0 Deletion 47999 LOC_Os02g44730 tetracycline transporter protein, putative, expressed FN3028-S Chr2 27093001 27141000 0 0 Deletion 47999 LOC_Os02g44740 expressed protein FN3028-S Chr2 27093001 27141000 0 0 Deletion 47999 LOC_Os02g44750 expressed protein FN3028-S Chr2 27093001 27141000 0 0 Deletion 47999 LOC_Os02g44760 hypothetical protein FN3028-S Chr2 27093001 27141000 0 0 Deletion 47999 LOC_Os02g44770 uncharacterized mscS family protein, putative, expressed FN3028-S Chr2 27093001 27141000 0 0 Deletion 47999 LOC_Os02g44780 polyprenyl synthetase, putative, expressed FN3028-S Chr2 27093001 27141000 0 0 Deletion 47999 LOC_Os02g44800 hypothetical protein FN3028-S Chr2 27093001 27141000 0 0 Deletion 47999 LOC_Os02g44810 tRNA pseudouridine synthase family protein, putative, expressed FN3028-S Chr2 27093001 27141000 0 0 Deletion 47999 LOC_Os02g44820 rho-GTPase-activating protein-related, putative, expressed FN3028-S Chr2 27093001 27141000 0 0 Deletion 47999 LOC_Os02g44880 expressed protein FN3028-S Chr2 27677001 27697000 0 0 Deletion 19999 LOC_Os02g45510 transposon protein, putative, unclassified, expressed FN3028-S Chr2 27677001 27697000 0 0 Deletion 19999 LOC_Os02g45520 uncharacterized membrane protein, putative, expressed FN3028-S Chr2 27677001 27697000 0 0 Deletion 19999 LOC_Os02g45770 OsMADS6 - MADS-box family gene with MIKCc type-box, expressed FN3028-S Chr2 27882001 27915000 0 0 Deletion 32999 LOC_Os02g45780 zinc finger, C3HC4 type domain containing protein, expressed FN3028-S Chr2 27882001 27915000 0 0 Deletion 32999 LOC_Os02g45790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr2 27882001 27915000 0 0 Deletion 32999 LOC_Os02g45800 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 27882001 27915000 0 0 Deletion 32999 LOC_Os02g45810 WD domain, G-beta repeat domain containing protein, expressed FN3028-S Chr2 27882001 27915000 0 0 Deletion 32999 LOC_Os02g45820 mitochondrial import inner membrane translocase subunit Tim, putative, expressed FN3028-S Chr2 27882001 27915000 0 0 Deletion 32999 LOC_Os02g45830 expressed protein FN3028-S Chr2 28106001 28120000 0 0 Deletion 13999 LOC_Os02g46120 regulatory protein, putative, expressed FN3028-S Chr2 28106001 28120000 0 0 Deletion 13999 LOC_Os02g46130 tRNA synthetases class II domain containing protein, expressed FN3028-S Chr2 28106001 28120000 0 0 Deletion 13999 LOC_Os02g47360 PPR repeat domain containing protein, putative, expressed FN3028-S Chr2 28763808 28763811 0 0 Deletion 3 INTRON HOMO FN3028-S Chr2 28917001 28938000 0 0 Deletion 20999 LOC_Os02g47370 transcription factor TF2, putative, expressed FN3028-S Chr2 28917001 28938000 0 0 Deletion 20999 LOC_Os02g47380 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 28917001 28938000 0 0 Deletion 20999 LOC_Os02g47390 expressed protein FN3028-S Chr2 28917001 28938000 0 0 Deletion 20999 LOC_Os02g47400 pectinacetylesterase domain containing protein, expressed FN3028-S Chr2 28917001 28938000 0 0 Deletion 20999 LOC_Os02g47480 expressed protein FN3028-S Chr2 2898001 2919000 0 0 Deletion 20999 LOC_Os02g05880 RNA polymerase Rpb1, domain 2 family protein, expressed FN3028-S Chr2 2898001 2919000 0 0 Deletion 20999 LOC_Os02g06584 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed FN3028-S Chr2 29008001 29065000 0 0 Deletion 56999 LOC_Os02g47490 expressed protein FN3028-S Chr2 29008001 29065000 0 0 Deletion 56999 LOC_Os02g47500 nodulin, putative, expressed FN3028-S Chr2 29008001 29065000 0 0 Deletion 56999 LOC_Os02g47510 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed FN3028-S Chr2 29008001 29065000 0 0 Deletion 56999 LOC_Os02g47520 expressed protein FN3028-S Chr2 29008001 29065000 0 0 Deletion 56999 LOC_Os02g47530 expressed protein FN3028-S Chr2 29008001 29065000 0 0 Deletion 56999 LOC_Os02g47540 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr2 29008001 29065000 0 0 Deletion 56999 LOC_Os02g47550 hypothetical protein FN3028-S Chr2 29008001 29065000 0 0 Deletion 56999 LOC_Os02g47560 DNA-binding protein, putative, expressed FN3028-S Chr2 29761001 29780000 0 0 Deletion 18999 LOC_Os02g48990 phosphatidylinositol transfer, putative, expressed FN3028-S Chr2 30019001 30039000 0 0 Deletion 19999 LOC_Os02g49100 retrotransposon protein, putative, unclassified FN3028-S Chr2 30019001 30039000 0 0 Deletion 19999 LOC_Os02g49110 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 30019001 30039000 0 0 Deletion 19999 LOC_Os02g49120 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 30019001 30039000 0 0 Deletion 19999 LOC_Os02g50590 expressed protein FN3028-S Chr2 30896001 30909000 0 0 Deletion 12999 LOC_Os02g50600 glycosyl transferase 8 domain containing protein, putative, expressed FN3028-S Chr2 30896001 30909000 0 0 Deletion 12999 LOC_Os02g50610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr2 30896001 30909000 0 0 Deletion 12999 LOC_Os02g50650 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr2 30938001 30970000 0 0 Deletion 31999 LOC_Os02g50660 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr2 30938001 30970000 0 0 Deletion 31999 LOC_Os02g50670 expressed protein FN3028-S Chr2 30938001 30970000 0 0 Deletion 31999 LOC_Os02g50680 AAA-type ATPase family protein, putative, expressed FN3028-S Chr2 30938001 30970000 0 0 Deletion 31999 LOC_Os02g50690 GDSL-like lipase/acylhydrolase, putative, expressed FN3028-S Chr2 31014001 31032000 0 0 Deletion 17999 LOC_Os02g50799 nuclear-pore anchor, putative, expressed FN3028-S Chr2 31014001 31032000 0 0 Deletion 17999 LOC_Os02g51310 TCP family transcription factor, putative, expressed FN3028-S Chr2 31463001 31483000 0 0 Deletion 19999 LOC_Os02g51390 expressed protein FN3028-S Chr2 31463001 31483000 0 0 Deletion 19999 LOC_Os02g51400 AAA family ATPase, putative, expressed FN3028-S Chr2 31463001 31483000 0 0 Deletion 19999 LOC_Os02g51960 transposon protein, putative, unclassified, expressed FN3028-S Chr2 31819001 31860000 0 0 Deletion 40999 LOC_Os02g51970 phosphate-induced protein 1 conserved region domain containing protein, expressed FN3028-S Chr2 31819001 31860000 0 0 Deletion 40999 LOC_Os02g51980 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr2 31819001 31860000 0 0 Deletion 40999 LOC_Os02g51990 expressed protein FN3028-S Chr2 31819001 31860000 0 0 Deletion 40999 LOC_Os02g52000 phosphate-induced protein 1 conserved region domain containing protein, expressed FN3028-S Chr2 31819001 31860000 0 0 Deletion 40999 LOC_Os02g52010 phosphate-induced protein 1 conserved region domain containing protein, expressed FN3028-S Chr2 31819001 31860000 0 0 Deletion 40999 LOC_Os02g52020 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr2 31819001 31860000 0 0 Deletion 40999 LOC_Os02g52030 expressed protein FN3028-S Chr2 31819001 31860000 0 0 Deletion 40999 LOC_Os02g52040 phosphate-induced protein 1 conserved region domain containing protein, expressed FN3028-S Chr2 31819001 31860000 0 0 Deletion 40999 LOC_Os02g52050 transposon protein, putative, unclassified, expressed FN3028-S Chr2 31819001 31860000 0 0 Deletion 40999 LOC_Os02g53330 1-aminocyclopropane-1-carboxylate deaminase, putative, expressed FN3028-S Chr2 32232318 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3028-S Chr2 32582033 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3028-S Chr2 33017001 33038000 0 0 Deletion 20999 LOC_Os02g53940 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr2 33017001 33038000 0 0 Deletion 20999 LOC_Os02g53950 expressed protein FN3028-S Chr2 33017001 33038000 0 0 Deletion 20999 LOC_Os02g53960 CXE carboxylesterase, putative, expressed FN3028-S Chr2 33017001 33038000 0 0 Deletion 20999 LOC_Os02g54050 ethylene-responsive transcription factor, putative, expressed FN3028-S Chr2 3302001 3329000 0 0 Deletion 26999 LOC_Os02g06588 ATP binding protein, putative, expressed FN3028-S Chr2 3302001 3329000 0 0 Deletion 26999 LOC_Os02g06592 SNF2 family N-terminal domain containing protein, expressed FN3028-S Chr2 3302001 3329000 0 0 Deletion 26999 LOC_Os02g06600 receptor-like protein kinase 2 precursor, putative, expressed FN3028-S Chr2 3302001 3329000 0 0 Deletion 26999 LOC_Os02g06605 expressed protein FN3028-S Chr2 3302001 3329000 0 0 Deletion 26999 LOC_Os02g06610 expressed protein FN3028-S Chr2 33107001 33131000 0 0 Deletion 23999 LOC_Os02g54060 chaperonin, putative, expressed FN3028-S Chr2 33107001 33131000 0 0 Deletion 23999 LOC_Os02g54080 expressed protein FN3028-S Chr2 33107001 33131000 0 0 Deletion 23999 LOC_Os02g54090 expressed protein FN3028-S Chr2 33107001 33131000 0 0 Deletion 23999 LOC_Os02g54560 SCP-like extracellular protein, expressed FN3028-S Chr2 33415001 33427000 0 0 Deletion 11999 LOC_Os02g54624 zinc finger family protein, putative, expressed FN3028-S Chr2 33455001 33486000 0 0 Deletion 30999 LOC_Os02g54640 glutamate receptor, putative, expressed FN3028-S Chr2 33455001 33486000 0 0 Deletion 30999 LOC_Os02g54650 diacylglycerol kinase, putative, expressed FN3028-S Chr2 33455001 33486000 0 0 Deletion 30999 LOC_Os02g55790 expressed protein FN3028-S Chr2 34161001 34182000 0 0 Deletion 20999 LOC_Os02g55800 expressed protein FN3028-S Chr2 34161001 34182000 0 0 Deletion 20999 LOC_Os02g55810 CXXXC9 - Cysteine-rich protein with paired CXXXC motifs precursor, expressed FN3028-S Chr2 34161001 34182000 0 0 Deletion 20999 LOC_Os02g55820 expressed protein FN3028-S Chr2 34161001 34182000 0 0 Deletion 20999 LOC_Os02g55830 transposon protein, putative, unclassified, expressed FN3028-S Chr2 34161001 34182000 0 0 Deletion 20999 LOC_Os02g57580 anthocyanin permease, putative, expressed FN3028-S Chr2 4383001 4407000 0 0 Deletion 23999 LOC_Os02g08270 class I glutamine amidotransferase, putative, expressed FN3028-S Chr2 4383001 4407000 0 0 Deletion 23999 LOC_Os02g08280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr2 4383001 4407000 0 0 Deletion 23999 LOC_Os02g08290 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr2 4383001 4407000 0 0 Deletion 23999 LOC_Os02g08390 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr2 4466001 4504000 0 0 Deletion 37999 LOC_Os02g08400 HLS, putative, expressed FN3028-S Chr2 4466001 4504000 0 0 Deletion 37999 LOC_Os02g08410 chorismate mutase, chloroplast precursor, putative, expressed FN3028-S Chr2 4466001 4504000 0 0 Deletion 37999 LOC_Os02g08420 cinnamoyl CoA reductase, putative, expressed FN3028-S Chr2 4466001 4504000 0 0 Deletion 37999 LOC_Os02g09900 transposon protein, putative, unclassified, expressed FN3028-S Chr2 5124001 5151000 0 0 Deletion 26999 LOC_Os02g09910 PHD-finger domain containing protein, putative, expressed FN3028-S Chr2 5124001 5151000 0 0 Deletion 26999 LOC_Os02g09920 PHD-finger domain containing protein, putative, expressed FN3028-S Chr2 5124001 5151000 0 0 Deletion 26999 LOC_Os02g12210 expressed protein FN3028-S Chr2 6349001 6364000 0 0 Deletion 14999 FN3028-S Chr2 6555001 6575000 0 0 Deletion 19999 LOC_Os02g12550 cytochrome P450, putative, expressed FN3028-S Chr2 6555001 6575000 0 0 Deletion 19999 LOC_Os02g12560 expressed protein FN3028-S Chr2 6555001 6575000 0 0 Deletion 19999 LOC_Os02g12570 pre-mRNA cleavage complex II protein Clp1, putative, expressed FN3028-S Chr2 6555001 6575000 0 0 Deletion 19999 LOC_Os02g12580 OsPP2Ac-3 - Phosphatase 2A isoform 3 belonging to family 1, expressed FN3028-S Chr2 6555001 6575000 0 0 Deletion 19999 LOC_Os02g13420 leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed FN3028-S Chr2 7166001 7185000 0 0 Deletion 18999 LOC_Os02g13430 receptor-like protein kinase 5 precursor, putative, expressed FN3028-S Chr2 7166001 7185000 0 0 Deletion 18999 LOC_Os02g13440 expressed protein FN3028-S Chr2 7166001 7185000 0 0 Deletion 18999 LOC_Os02g13450 MEGL7 - Maternally expressed gene MEG family protein precursor, putative, expressed FN3028-S Chr2 7166001 7185000 0 0 Deletion 18999 LOC_Os02g13460 receptor-like protein kinase 2 precursor, putative, expressed FN3028-S Chr2 7166001 7185000 0 0 Deletion 18999 LOC_Os02g14000 actin-related protein 2/3 complex subunit 3, putative, expressed FN3028-S Chr2 8411001 8438000 0 0 Deletion 26999 LOC_Os02g15110 zinc finger, C3HC4 type domain containing protein, expressed FN3028-S Chr2 8411001 8438000 0 0 Deletion 26999 LOC_Os02g15120 RING-H2 finger protein, putative, expressed FN3028-S Chr2 8411001 8438000 0 0 Deletion 26999 LOC_Os02g15130 expressed protein FN3028-S Chr2 8411001 8438000 0 0 Deletion 26999 LOC_Os02g15140 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr2 8411001 8438000 0 0 Deletion 26999 LOC_Os02g15810 HMG1/2, putative, expressed FN3028-S Chr2 9006001 9042000 0 0 Deletion 35999 LOC_Os02g15910 hypothetical protein FN3028-S Chr2 9006001 9042000 0 0 Deletion 35999 LOC_Os02g15920 expressed protein FN3028-S Chr2 9006001 9042000 0 0 Deletion 35999 LOC_Os02g15930 expressed protein FN3028-S Chr2 9006001 9042000 0 0 Deletion 35999 LOC_Os02g17640 isochorismatase family protein, putative, expressed FN3028-S Chr2 9207079 9207079 0 0 Insertion 1 upstream_gene_variant HET FN3028-S Chr2 9762366 9762370 0 0 Deletion 4 INTERGENIC HOMO FN3028-S Chr2 984001 1013000 0 0 Deletion 28999 LOC_Os02g02670 NBS-LRR disease resistance protein, putative, expressed FN3028-S Chr2 984001 1013000 0 0 Deletion 28999 LOC_Os02g02690 expressed protein FN3028-S Chr2 984001 1013000 0 0 Deletion 28999 LOC_Os02g02880 expressed protein FN3028-S Chr3 11095001 11128000 0 0 Deletion 32999 LOC_Os03g19750 transposon protein, putative, unclassified, expressed FN3028-S Chr3 11095001 11128000 0 0 Deletion 32999 LOC_Os03g19760 HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed FN3028-S Chr3 11095001 11128000 0 0 Deletion 32999 LOC_Os03g19770 glycine-rich cell wall protein, putative, expressed FN3028-S Chr3 11095001 11128000 0 0 Deletion 32999 LOC_Os03g20100 S1 RNA binding domain containing protein, expressed FN3028-S Chr3 11336001 11354000 0 0 Deletion 17999 LOC_Os03g21080 guanine nucleotide exchange factor, putative, expressed FN3028-S Chr3 12000001 12020000 0 0 Deletion 19999 LOC_Os03g21090 auxin-independent growth promoter protein, putative, expressed FN3028-S Chr3 12000001 12020000 0 0 Deletion 19999 LOC_Os03g21100 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr3 12000001 12020000 0 0 Deletion 19999 LOC_Os03g21110 emp24/gp25L/p24 family protein, putative, expressed FN3028-S Chr3 12000001 12020000 0 0 Deletion 19999 LOC_Os03g21400 cytochrome P450, putative, expressed FN3028-S Chr3 12233001 12257000 0 0 Deletion 23999 LOC_Os03g21419 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr3 12233001 12257000 0 0 Deletion 23999 LOC_Os03g21440 expressed protein FN3028-S Chr3 12233001 12257000 0 0 Deletion 23999 LOC_Os03g22450 auxin response factor 75, putative, expressed FN3028-S Chr3 12870001 12889000 0 0 Deletion 18999 LOC_Os03g22470 desiccation-related protein PCC13-62 precursor, putative, expressed FN3028-S Chr3 12870001 12889000 0 0 Deletion 18999 LOC_Os03g22480 transposon protein, putative, unclassified, expressed FN3028-S Chr3 12870001 12889000 0 0 Deletion 18999 LOC_Os03g22570 MIF4G domain containing protein, putative, expressed FN3028-S Chr3 12971001 13006000 0 0 Deletion 34999 LOC_Os03g22570 MIF4G domain containing protein, putative, expressed FN3028-S Chr3 12971001 13006000 0 0 Deletion 34999 LOC_Os03g22580 CW-type Zinc Finger, putative, expressed FN3028-S Chr3 12971001 13006000 0 0 Deletion 34999 LOC_Os03g22590 nodulin MtN3 family protein, putative, expressed FN3028-S Chr3 13612001 13627000 0 0 Deletion 14999 LOC_Os03g23990 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 13612001 13627000 0 0 Deletion 14999 LOC_Os03g24000 retrotransposon protein, putative, unclassified FN3028-S Chr3 13612001 13627000 0 0 Deletion 14999 LOC_Os03g24010 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 13612001 13627000 0 0 Deletion 14999 LOC_Os03g25980 polypyrimidine tract-binding protein, putative, expressed FN3028-S Chr3 14883001 14913000 0 0 Deletion 29999 LOC_Os03g25984 hypothetical protein FN3028-S Chr3 14883001 14913000 0 0 Deletion 29999 LOC_Os03g25990 expansin precursor, putative, expressed FN3028-S Chr3 14883001 14913000 0 0 Deletion 29999 LOC_Os03g26000 expressed protein FN3028-S Chr3 14883001 14913000 0 0 Deletion 29999 LOC_Os03g26010 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 14883001 14913000 0 0 Deletion 29999 LOC_Os03g26020 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 14883001 14913000 0 0 Deletion 29999 LOC_Os03g26880 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 15344001 15356000 0 0 Deletion 11999 LOC_Os03g26890 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 15344001 15356000 0 0 Deletion 11999 LOC_Os03g27440 hypothetical protein FN3028-S Chr3 15741001 15760000 0 0 Deletion 18999 LOC_Os03g27450 ADP-ribosylation factor, putative, expressed FN3028-S Chr3 15741001 15760000 0 0 Deletion 18999 LOC_Os03g27460 heat shock protein DnaJ, putative, expressed FN3028-S Chr3 15741001 15760000 0 0 Deletion 18999 LOC_Os03g27470 hypothetical protein FN3028-S Chr3 15741001 15760000 0 0 Deletion 18999 LOC_Os03g27560 expressed protein FN3028-S Chr3 15806001 15823000 0 0 Deletion 16999 LOC_Os03g27570 expressed protein FN3028-S Chr3 15806001 15823000 0 0 Deletion 16999 LOC_Os03g27580 expressed protein FN3028-S Chr3 15806001 15823000 0 0 Deletion 16999 LOC_Os03g28180 expressed protein FN3028-S Chr3 16221001 16235000 0 0 Deletion 13999 LOC_Os03g28190 dirigent, putative, expressed FN3028-S Chr3 16221001 16235000 0 0 Deletion 13999 LOC_Os03g28204 transposon protein, putative, unclassified, expressed FN3028-S Chr3 16221001 16235000 0 0 Deletion 13999 LOC_Os03g28289 expressed protein FN3028-S Chr3 16278001 16297000 0 0 Deletion 18999 LOC_Os03g28300 protein kinase domain containing protein, expressed FN3028-S Chr3 16278001 16297000 0 0 Deletion 18999 LOC_Os03g28310 dnaJ domain containing protein, expressed FN3028-S Chr3 16278001 16297000 0 0 Deletion 18999 LOC_Os03g29206 retrotransposon protein, putative, unclassified FN3028-S Chr3 16606001 16621000 0 0 Deletion 14999 LOC_Os03g29212 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr3 16606001 16621000 0 0 Deletion 14999 LOC_Os03g29220 retrotransposon protein, putative, LINE subclass, expressed FN3028-S Chr3 16606001 16621000 0 0 Deletion 14999 LOC_Os03g29222 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 16709001 16732000 0 0 Deletion 22999 LOC_Os03g29370 hypothetical protein FN3028-S Chr3 16709001 16732000 0 0 Deletion 22999 LOC_Os03g29850 metal cation transporter, putative, expressed FN3028-S Chr3 17006001 17024000 0 0 Deletion 17999 LOC_Os03g29864 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 17006001 17024000 0 0 Deletion 17999 LOC_Os03g30070 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr3 17140123 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3028-S Chr3 17153001 17167000 0 0 Deletion 13999 LOC_Os03g30084 expressed protein FN3028-S Chr3 17153001 17167000 0 0 Deletion 13999 LOC_Os03g30088 retrotransposon protein, putative, unclassified FN3028-S Chr3 17153001 17167000 0 0 Deletion 13999 LOC_Os03g30350 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 17311001 17326000 0 0 Deletion 14999 LOC_Os03g30360 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 17311001 17326000 0 0 Deletion 14999 LOC_Os03g30370 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr3 17311001 17326000 0 0 Deletion 14999 LOC_Os03g30390 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr3 17992001 18012000 0 0 Deletion 19999 LOC_Os03g31560 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 17992001 18012000 0 0 Deletion 19999 LOC_Os03g31594 jmjC domain containing protein, expressed FN3028-S Chr3 18038001 18084000 0 0 Deletion 45999 LOC_Os03g31594 jmjC domain containing protein, expressed FN3028-S Chr3 18038001 18084000 0 0 Deletion 45999 LOC_Os03g31620 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr3 18038001 18084000 0 0 Deletion 45999 LOC_Os03g31630 OsSub29 - Putative Subtilisin homologue, expressed FN3028-S Chr3 18038001 18084000 0 0 Deletion 45999 LOC_Os03g31634 expressed protein FN3028-S Chr3 18038001 18084000 0 0 Deletion 45999 LOC_Os03g31640 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 18038001 18084000 0 0 Deletion 45999 LOC_Os03g31650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 18038001 18084000 0 0 Deletion 45999 LOC_Os03g31660 transposon protein, putative, unclassified, expressed FN3028-S Chr3 18038001 18084000 0 0 Deletion 45999 LOC_Os03g31670 hypothetical protein FN3028-S Chr3 1870001 1893000 0 0 Deletion 22999 LOC_Os03g04100 expressed protein FN3028-S Chr3 1870001 1893000 0 0 Deletion 22999 LOC_Os03g04110 lysM domain-containing GPI-anchored protein precursor, putative, expressed FN3028-S Chr3 1870001 1893000 0 0 Deletion 22999 LOC_Os03g04120 AMP-binding enzyme, putative, expressed FN3028-S Chr3 1870001 1893000 0 0 Deletion 22999 LOC_Os03g04130 AMP-binding domain containing protein, expressed FN3028-S Chr3 1870001 1893000 0 0 Deletion 22999 LOC_Os03g04140 serine acetyltransferase protein, putative, expressed FN3028-S Chr3 1870001 1893000 0 0 Deletion 22999 LOC_Os03g04190 cytochrome P450, putative, expressed FN3028-S Chr3 18798001 18809000 0 0 Deletion 10999 LOC_Os03g32870 retrotransposon protein, putative, unclassified FN3028-S Chr3 18798001 18809000 0 0 Deletion 10999 LOC_Os03g32880 retrotransposon protein, putative, unclassified FN3028-S Chr3 18798001 18809000 0 0 Deletion 10999 LOC_Os03g33230 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 18817260 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3028-S Chr3 18844897 18844898 0 0 Deletion 1 intron_variant HET FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33240 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33260 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33270 retrotransposon protein, putative, unclassified FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33280 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33290 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33300 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33310 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33319 retrotransposon protein, putative, unclassified FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33328 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33340 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33360 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33370 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33380 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33384 hypothetical protein FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33390 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33400 expressed protein FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33430 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33460 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33490 hypothetical protein FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33500 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33509 expressed protein FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33520 exo70 exocyst complex subunit, putative, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33530 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33540 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33550 hypothetical protein FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33570 calcineurin B-like protein 8, putative, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33580 mitotic checkpoint protein, putative, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33590 interferon-related developmental regulator, putative, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33600 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33610 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33620 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33640 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33650 AGO7, putative, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33660 expressed protein FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33670 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33690 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33700 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33710 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33720 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33750 retrotransposon protein, putative, LINE subclass, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33760 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33770 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33790 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33800 expressed protein FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33810 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33819 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33828 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33837 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33850 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33870 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33880 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 19002001 19351000 0 0 Deletion 348999 LOC_Os03g33890 retrotransposon protein, putative, unclassified FN3028-S Chr3 19648001 19668000 0 0 Deletion 19999 LOC_Os03g35454 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 19648001 19668000 0 0 Deletion 19999 LOC_Os03g35470 hypothetical protein FN3028-S Chr3 19648001 19668000 0 0 Deletion 19999 LOC_Os03g35930 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr3 1968001 1993000 0 0 Deletion 24999 LOC_Os03g04310 BHLH transcription factor, putative, expressed FN3028-S Chr3 1968001 1993000 0 0 Deletion 24999 LOC_Os03g04320 expressed protein FN3028-S Chr3 1968001 1993000 0 0 Deletion 24999 LOC_Os03g04870 expressed protein FN3028-S Chr3 19759632 19759632 0 0 Insertion 1 upstream_gene_variant HET FN3028-S Chr3 19930001 19948000 0 0 Deletion 17999 LOC_Os03g35940 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr3 19930001 19948000 0 0 Deletion 17999 LOC_Os03g35950 expressed protein FN3028-S Chr3 19930001 19948000 0 0 Deletion 17999 LOC_Os03g36239 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 20271001 20308000 0 0 Deletion 36999 LOC_Os03g36580 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr3 20271001 20308000 0 0 Deletion 36999 LOC_Os03g36590 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 20271001 20308000 0 0 Deletion 36999 LOC_Os03g36600 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 20271001 20308000 0 0 Deletion 36999 LOC_Os03g36610 retrotransposon protein, putative, unclassified FN3028-S Chr3 20271001 20308000 0 0 Deletion 36999 LOC_Os03g36620 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 20271001 20308000 0 0 Deletion 36999 LOC_Os03g36684 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 20345001 20370000 0 0 Deletion 24999 LOC_Os03g36700 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 20345001 20370000 0 0 Deletion 24999 LOC_Os03g36710 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 20345001 20370000 0 0 Deletion 24999 LOC_Os03g36720 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr3 20345001 20370000 0 0 Deletion 24999 LOC_Os03g36730 OST3/OST6 family protein, putative, expressed FN3028-S Chr3 20345001 20370000 0 0 Deletion 24999 LOC_Os03g37340 expressed protein FN3028-S Chr3 20694001 20744000 0 0 Deletion 49999 LOC_Os03g37350 transposon protein, putative, Pong sub-class FN3028-S Chr3 20694001 20744000 0 0 Deletion 49999 LOC_Os03g37360 expressed protein FN3028-S Chr3 20694001 20744000 0 0 Deletion 49999 LOC_Os03g37377 retrotransposon protein, putative, unclassified FN3028-S Chr3 20694001 20744000 0 0 Deletion 49999 LOC_Os03g37394 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 20694001 20744000 0 0 Deletion 49999 LOC_Os03g37411 MATE efflux family protein, putative, expressed FN3028-S Chr3 21013069 T-C 0 0 Single Base Substitution 0 INTRON HET FN3028-S Chr3 21342001 21371000 0 0 Deletion 28999 LOC_Os03g38470 GDSL-like lipase/acylhydrolase, putative, expressed FN3028-S Chr3 21342001 21371000 0 0 Deletion 28999 LOC_Os03g38480 expressed protein FN3028-S Chr3 21342001 21371000 0 0 Deletion 28999 LOC_Os03g38490 DAG protein, chloroplast precursor, putative, expressed FN3028-S Chr3 21342001 21371000 0 0 Deletion 28999 LOC_Os03g38689 expressed protein FN3028-S Chr3 21476001 21533000 0 0 Deletion 56999 LOC_Os03g38700 tropinone reductase, putative, expressed FN3028-S Chr3 21476001 21533000 0 0 Deletion 56999 LOC_Os03g38710 protein kinase, putative, expressed FN3028-S Chr3 21476001 21533000 0 0 Deletion 56999 LOC_Os03g38720 proteasome maturation factor UMP1 family protein, expressed FN3028-S Chr3 21476001 21533000 0 0 Deletion 56999 LOC_Os03g38730 peroxisomal membrane protein, putative, expressed FN3028-S Chr3 21476001 21533000 0 0 Deletion 56999 LOC_Os03g38740 Dicer, putative, expressed FN3028-S Chr3 21476001 21533000 0 0 Deletion 56999 LOC_Os03g38745 serine/arginine repetitive matrix protein 1, putative, expressed FN3028-S Chr3 21476001 21533000 0 0 Deletion 56999 LOC_Os03g38750 expressed protein FN3028-S Chr3 21476001 21533000 0 0 Deletion 56999 LOC_Os03g38764 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 21476001 21533000 0 0 Deletion 56999 LOC_Os03g38970 metal ion binding protein, putative, expressed FN3028-S Chr3 21651001 21664000 0 0 Deletion 12999 LOC_Os03g39220 expressed protein FN3028-S Chr3 21870001 21885000 0 0 Deletion 14999 LOC_Os03g39356 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 21870001 21885000 0 0 Deletion 14999 LOC_Os03g39362 retrotransposon protein, putative, unclassified FN3028-S Chr3 21870001 21885000 0 0 Deletion 14999 LOC_Os03g39370 expressed protein FN3028-S Chr3 21870001 21885000 0 0 Deletion 14999 LOC_Os03g39380 expressed protein FN3028-S Chr3 21870001 21885000 0 0 Deletion 14999 LOC_Os03g40194 disease resistance RPP13-like protein 1, putative, expressed FN3028-S Chr3 22342001 22382000 0 0 Deletion 39999 LOC_Os03g40210 expressed protein FN3028-S Chr3 22342001 22382000 0 0 Deletion 39999 LOC_Os03g40220 retrotransposon protein, putative, unclassified FN3028-S Chr3 22342001 22382000 0 0 Deletion 39999 LOC_Os03g40230 expressed protein FN3028-S Chr3 22342001 22382000 0 0 Deletion 39999 LOC_Os03g40240 hypothetical protein FN3028-S Chr3 22342001 22382000 0 0 Deletion 39999 LOC_Os03g40250 Leucine Rich Repeat family protein, expressed FN3028-S Chr3 22342001 22382000 0 0 Deletion 39999 LOC_Os03g40260 Regulator of chromosome condensation domain containing protein, expressed FN3028-S Chr3 22342001 22382000 0 0 Deletion 39999 LOC_Os03g40270 alpha-1,4-glucan-protein synthase, putative, expressed FN3028-S Chr3 22342001 22382000 0 0 Deletion 39999 LOC_Os03g40410 expressed protein FN3028-S Chr3 22452001 22470000 0 0 Deletion 17999 LOC_Os03g40430 expressed protein FN3028-S Chr3 22452001 22470000 0 0 Deletion 17999 LOC_Os03g40440 B12D protein, putative, expressed FN3028-S Chr3 22452001 22470000 0 0 Deletion 17999 LOC_Os03g40870 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 22730001 22755000 0 0 Deletion 24999 LOC_Os03g40900 expressed protein FN3028-S Chr3 22730001 22755000 0 0 Deletion 24999 LOC_Os03g40910 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 22730001 22755000 0 0 Deletion 24999 LOC_Os03g40920 expressed protein FN3028-S Chr3 22730001 22755000 0 0 Deletion 24999 LOC_Os03g40930 expressed protein FN3028-S Chr3 22730001 22755000 0 0 Deletion 24999 LOC_Os03g41960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 23126868 23126870 0 0 Deletion 2 INTERGENIC HET FN3028-S Chr3 2328001 2355000 0 0 Deletion 26999 LOC_Os03g04890 zinc finger family protein, putative, expressed FN3028-S Chr3 2328001 2355000 0 0 Deletion 26999 LOC_Os03g04900 MYB family transcription factor, putative, expressed FN3028-S Chr3 2328001 2355000 0 0 Deletion 26999 LOC_Os03g05790 transposon protein, putative, unclassified, expressed FN3028-S Chr3 23305001 23322000 0 0 Deletion 16999 LOC_Os03g41970 retrotransposon protein, putative, unclassified FN3028-S Chr3 23305001 23322000 0 0 Deletion 16999 LOC_Os03g42950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 24077001 24110000 0 0 Deletion 32999 LOC_Os03g43169 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr3 24077001 24110000 0 0 Deletion 32999 LOC_Os03g43180 transposon protein, putative, unclassified, expressed FN3028-S Chr3 24077001 24110000 0 0 Deletion 32999 LOC_Os03g43190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 24077001 24110000 0 0 Deletion 32999 LOC_Os03g43200 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 24077001 24110000 0 0 Deletion 32999 LOC_Os03g43210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 24077001 24110000 0 0 Deletion 32999 LOC_Os03g43220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 24077001 24110000 0 0 Deletion 32999 LOC_Os03g43230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 24077001 24110000 0 0 Deletion 32999 LOC_Os03g43770 OsFBX97 - F-box domain containing protein, expressed FN3028-S Chr3 24484001 24512000 0 0 Deletion 27999 LOC_Os03g43779 expressed protein FN3028-S Chr3 24484001 24512000 0 0 Deletion 27999 LOC_Os03g43814 retrotransposon, putative, centromere-specific FN3028-S Chr3 24555001 24575000 0 0 Deletion 19999 LOC_Os03g43820 plant invertase/pectin methylesterase inhibitor domain containing protein, expressed FN3028-S Chr3 24555001 24575000 0 0 Deletion 19999 LOC_Os03g43830 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 24555001 24575000 0 0 Deletion 19999 LOC_Os03g43840 LSD1 zinc finger domain containing protein, expressed FN3028-S Chr3 24555001 24575000 0 0 Deletion 19999 LOC_Os03g46270 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr3 26158001 26180000 0 0 Deletion 21999 LOC_Os03g46280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr3 26158001 26180000 0 0 Deletion 21999 LOC_Os03g46390 ras-related protein, putative, expressed FN3028-S Chr3 26232001 26253000 0 0 Deletion 20999 LOC_Os03g46390 ras-related protein, putative, expressed FN3028-S Chr3 26232001 26253000 0 0 Deletion 20999 LOC_Os03g46400 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed FN3028-S Chr3 26232001 26253000 0 0 Deletion 20999 LOC_Os03g46410 transmembrane protein 56, putative, expressed FN3028-S Chr3 26232001 26253000 0 0 Deletion 20999 LOC_Os03g46420 expressed protein FN3028-S Chr3 26232001 26253000 0 0 Deletion 20999 LOC_Os03g46424 expressed protein FN3028-S Chr3 26232001 26253000 0 0 Deletion 20999 LOC_Os03g46630 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr3 26387001 26411000 0 0 Deletion 23999 LOC_Os03g46640 deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed FN3028-S Chr3 26387001 26411000 0 0 Deletion 23999 LOC_Os03g46650 WD domain, G-beta repeat domain containing protein, expressed FN3028-S Chr3 26387001 26411000 0 0 Deletion 23999 LOC_Os03g46660 glucan endo-1,3-beta-glucosidase precursor, putative, expressed FN3028-S Chr3 26387001 26411000 0 0 Deletion 23999 LOC_Os03g47693 ankyrin repeat family protein, putative, expressed FN3028-S Chr3 2689715 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3028-S Chr3 27024001 27051000 0 0 Deletion 26999 LOC_Os03g47720 ankyrin, putative, expressed FN3028-S Chr3 27024001 27051000 0 0 Deletion 26999 LOC_Os03g47730 homeobox domain containing protein, expressed FN3028-S Chr3 27024001 27051000 0 0 Deletion 26999 LOC_Os03g47960 expressed protein FN3028-S Chr3 27663001 27677000 0 0 Deletion 13999 LOC_Os03g48540 expressed protein FN3028-S Chr3 27663001 27677000 0 0 Deletion 13999 LOC_Os03g48550 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr3 27663001 27677000 0 0 Deletion 13999 LOC_Os03g49000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr3 28040001 28062000 0 0 Deletion 21999 LOC_Os03g49240 expressed protein FN3028-S Chr3 28040001 28062000 0 0 Deletion 21999 LOC_Os03g49250 OsFBO16 - F-box and other domain containing protein, expressed FN3028-S Chr3 28040001 28062000 0 0 Deletion 21999 LOC_Os03g49260 lipoxygenase, putative, expressed FN3028-S Chr3 28040001 28062000 0 0 Deletion 21999 LOC_Os03g49270 THION36 - Plant thionin family protein precursor, expressed FN3028-S Chr3 28040001 28062000 0 0 Deletion 21999 LOC_Os03g49280 THION37 - Plant thionin family protein precursor, putative, expressed FN3028-S Chr3 28040001 28062000 0 0 Deletion 21999 LOC_Os03g49290 hypothetical protein FN3028-S Chr3 28040001 28062000 0 0 Deletion 21999 LOC_Os03g49560 expressed protein FN3028-S Chr3 28222001 28242000 0 0 Deletion 19999 LOC_Os03g49570 domain of unknown function, DUF250 domain containing protein, expressed FN3028-S Chr3 28222001 28242000 0 0 Deletion 19999 LOC_Os03g49580 eukaryotic peptide chain release factor subunit 1-1, putative, expressed FN3028-S Chr3 28222001 28242000 0 0 Deletion 19999 LOC_Os03g49590 expressed protein FN3028-S Chr3 28222001 28242000 0 0 Deletion 19999 LOC_Os03g49600 Os3bglu7 - beta-glucosidase, exo-beta-glucanse, expressed FN3028-S Chr3 28222001 28242000 0 0 Deletion 19999 LOC_Os03g49640 STE_MEKK_ste11_MAP3K.14 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed FN3028-S Chr3 28408001 28425000 0 0 Deletion 16999 LOC_Os03g49860 expressed protein FN3028-S Chr3 28408001 28425000 0 0 Deletion 16999 LOC_Os03g49870 transposon protein, putative, Mariner sub-class, expressed FN3028-S Chr3 28408001 28425000 0 0 Deletion 16999 LOC_Os03g50340 coatomer alpha subunit, putative, expressed FN3028-S Chr3 28722001 28737000 0 0 Deletion 14999 LOC_Os03g50340 coatomer alpha subunit, putative, expressed FN3028-S Chr3 28722001 28737000 0 0 Deletion 14999 LOC_Os03g50350 coatomer alpha subunit, putative, expressed FN3028-S Chr3 2893001 2908000 0 0 Deletion 14999 LOC_Os03g05800 expressed protein FN3028-S Chr3 2893001 2908000 0 0 Deletion 14999 LOC_Os03g05806 pseudouridine synthase family protein, putative, expressed FN3028-S Chr3 2893001 2908000 0 0 Deletion 14999 LOC_Os03g05812 expressed protein FN3028-S Chr3 2893001 2908000 0 0 Deletion 14999 LOC_Os03g06120 PLAC8 family protein, expressed FN3028-S Chr3 29085001 29116000 0 0 Deletion 30999 LOC_Os03g50940 cytochrome c oxidase assembly protein COX11, mitochondrial precursor, putative, expressed FN3028-S Chr3 29085001 29116000 0 0 Deletion 30999 LOC_Os03g50960 LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3028-S Chr3 29085001 29116000 0 0 Deletion 30999 LOC_Os03g50970 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr3 29085001 29116000 0 0 Deletion 30999 LOC_Os03g51140 HEAT repeat family protein, putative, expressed FN3028-S Chr3 29484001 29511000 0 0 Deletion 26999 LOC_Os03g51556 hypothetical protein FN3028-S Chr3 29484001 29511000 0 0 Deletion 26999 LOC_Os03g51724 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr3 29639001 29658000 0 0 Deletion 18999 LOC_Os03g51730 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr3 29639001 29658000 0 0 Deletion 18999 LOC_Os03g52475 pentatricopeptide, putative, expressed FN3028-S Chr3 30116001 30173000 0 0 Deletion 56999 LOC_Os03g52490 nucleic acid binding protein, putative, expressed FN3028-S Chr3 30116001 30173000 0 0 Deletion 56999 LOC_Os03g52500 expressed protein FN3028-S Chr3 30116001 30173000 0 0 Deletion 56999 LOC_Os03g52510 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 30116001 30173000 0 0 Deletion 56999 LOC_Os03g52520 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 30116001 30173000 0 0 Deletion 56999 LOC_Os03g52530 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr3 30116001 30173000 0 0 Deletion 56999 LOC_Os03g52540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 30116001 30173000 0 0 Deletion 56999 LOC_Os03g52550 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 30116001 30173000 0 0 Deletion 56999 LOC_Os03g52560 glycosyl hydrolases, putative, expressed FN3028-S Chr3 30116001 30173000 0 0 Deletion 56999 LOC_Os03g52570 glycerol-3-phosphate acyltransferase, putative, expressed FN3028-S Chr3 30116001 30173000 0 0 Deletion 56999 LOC_Os03g52594 CCR4-NOT transcription factor, putative, expressed FN3028-S Chr3 3067001 3090000 0 0 Deletion 22999 LOC_Os03g06139 ABC-2 type transporter domain containing protein, expressed FN3028-S Chr3 3067001 3090000 0 0 Deletion 22999 LOC_Os03g07600 calcium-binding protein, putative, expressed FN3028-S Chr3 30783001 30807000 0 0 Deletion 23999 LOC_Os03g53690 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed FN3028-S Chr3 30783001 30807000 0 0 Deletion 23999 LOC_Os03g53700 PHD-finger domain containing protein, putative, expressed FN3028-S Chr3 30783001 30807000 0 0 Deletion 23999 LOC_Os03g53710 aldose 1-epimerase, putative, expressed FN3028-S Chr3 30783001 30807000 0 0 Deletion 23999 LOC_Os03g53720 SRPK4, putative, expressed FN3028-S Chr3 30783001 30807000 0 0 Deletion 23999 LOC_Os03g53990 expressed protein FN3028-S Chr3 30957001 30971000 0 0 Deletion 13999 LOC_Os03g54000 oligopeptide transporter, putative, expressed FN3028-S Chr3 30957001 30971000 0 0 Deletion 13999 LOC_Os03g54010 retrotransposon protein, putative, unclassified FN3028-S Chr3 30957001 30971000 0 0 Deletion 13999 LOC_Os03g54020 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr3 30957001 30971000 0 0 Deletion 13999 LOC_Os03g56560 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 32217001 32233000 0 0 Deletion 15999 LOC_Os03g56560 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 32217001 32233000 0 0 Deletion 15999 LOC_Os03g56566 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 32217001 32233000 0 0 Deletion 15999 LOC_Os03g56572 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr3 32514001 32544000 0 0 Deletion 29999 LOC_Os03g57050 expressed protein FN3028-S Chr3 32514001 32544000 0 0 Deletion 29999 LOC_Os03g57060 expressed protein FN3028-S Chr3 32514001 32544000 0 0 Deletion 29999 LOC_Os03g57070 amine oxidase-related, putative, expressed FN3028-S Chr3 32514001 32544000 0 0 Deletion 29999 LOC_Os03g57080 PLA IIIA/PLP7, putative, expressed FN3028-S Chr3 32514001 32544000 0 0 Deletion 29999 LOC_Os03g60430 AP2 domain containing protein, expressed FN3028-S Chr3 32548842 32548851 0 0 Deletion 9 INTERGENIC HOMO FN3028-S Chr3 34363001 34380000 0 0 Deletion 16999 LOC_Os03g60449 hypothetical protein FN3028-S Chr3 34363001 34380000 0 0 Deletion 16999 LOC_Os03g60460 aminopeptidase, putative, expressed FN3028-S Chr3 34363001 34380000 0 0 Deletion 16999 LOC_Os03g60530 ras-related protein, putative, expressed FN3028-S Chr3 34409001 34444000 0 0 Deletion 34999 LOC_Os03g60540 ZOS3-20 - C2H2 zinc finger protein, expressed FN3028-S Chr3 34409001 34444000 0 0 Deletion 34999 LOC_Os03g60550 ThiF family domain containing protein, putative, expressed FN3028-S Chr3 34409001 34444000 0 0 Deletion 34999 LOC_Os03g60560 ZOS3-21 - C2H2 zinc finger protein, expressed FN3028-S Chr3 34409001 34444000 0 0 Deletion 34999 LOC_Os03g60570 ZOS3-22 - C2H2 zinc finger protein, expressed FN3028-S Chr3 34409001 34444000 0 0 Deletion 34999 LOC_Os03g60580 actin-depolymerizing factor, putative, expressed FN3028-S Chr3 34409001 34444000 0 0 Deletion 34999 LOC_Os03g60600 zinc knuckle domain containing protein, expressed FN3028-S Chr3 34409001 34444000 0 0 Deletion 34999 LOC_Os03g60610 SEC14 cytosolic factor family protein, putative, expressed FN3028-S Chr3 34409001 34444000 0 0 Deletion 34999 LOC_Os03g60690 pentatricopeptide, putative, expressed FN3028-S Chr3 34495001 34526000 0 0 Deletion 30999 LOC_Os03g60700 dolichyl-phosphate beta-glycosyltransferase, putative, expressed FN3028-S Chr3 34495001 34526000 0 0 Deletion 30999 LOC_Os03g60710 protein kinase domain containing protein, expressed FN3028-S Chr3 34495001 34526000 0 0 Deletion 30999 LOC_Os03g60720 expansin precursor, putative, expressed FN3028-S Chr3 34495001 34526000 0 0 Deletion 30999 LOC_Os03g60730 transposon protein, putative, unclassified, expressed FN3028-S Chr3 34495001 34526000 0 0 Deletion 30999 LOC_Os03g61050 FG-GAP repeat-containing protein, putative, expressed FN3028-S Chr3 34685001 34698000 0 0 Deletion 12999 LOC_Os03g61060 protein kinase domain containing protein, expressed FN3028-S Chr3 34685001 34698000 0 0 Deletion 12999 LOC_Os03g61070 expressed protein FN3028-S Chr3 34685001 34698000 0 0 Deletion 12999 LOC_Os03g61440 uncharacterized Cys-rich domain containing protein, putative, expressed FN3028-S Chr3 34840265 34840265 0 0 Insertion 3 upstream_gene_variant HET FN3028-S Chr3 34861001 34874000 0 0 Deletion 12999 LOC_Os03g61450 transposon protein, putative, unclassified, expressed FN3028-S Chr3 34861001 34874000 0 0 Deletion 12999 LOC_Os03g61460 hypothetical protein FN3028-S Chr3 34861001 34874000 0 0 Deletion 12999 LOC_Os03g61470 uncharacterized Cys-rich domain containing protein, putative, expressed FN3028-S Chr3 34861001 34874000 0 0 Deletion 12999 LOC_Os03g61480 uncharacterized Cys-rich domain containing protein, putative, expressed FN3028-S Chr3 34861001 34874000 0 0 Deletion 12999 LOC_Os03g62100 MYB family transcription factor, putative, expressed FN3028-S Chr3 35188001 35217000 0 0 Deletion 28999 LOC_Os03g62110 nicotinate phosphoribosyltransferase family domain containing protein, expressed FN3028-S Chr3 35188001 35217000 0 0 Deletion 28999 LOC_Os03g62120 heat shock protein DnaJ, putative, expressed FN3028-S Chr3 35188001 35217000 0 0 Deletion 28999 LOC_Os03g62130 heat shock protein DnaJ, putative, expressed FN3028-S Chr3 35188001 35217000 0 0 Deletion 28999 LOC_Os03g62140 heat shock protein DnaJ, putative, expressed FN3028-S Chr3 35188001 35217000 0 0 Deletion 28999 LOC_Os03g62150 heat shock protein DnaJ, putative, expressed FN3028-S Chr3 35188001 35217000 0 0 Deletion 28999 LOC_Os03g62160 expressed protein FN3028-S Chr3 35188001 35217000 0 0 Deletion 28999 LOC_Os03g62170 cyclase/dehydrase family protein, expressed FN3028-S Chr3 35188001 35217000 0 0 Deletion 28999 LOC_Os03g63400 transcription factor BTF3, putative, expressed FN3028-S Chr3 35823001 35844000 0 0 Deletion 20999 LOC_Os03g63410 elongation factor Tu, putative, expressed FN3028-S Chr3 35823001 35844000 0 0 Deletion 20999 LOC_Os03g63420 OsGrx_S14 - glutaredoxin subgroup II, expressed FN3028-S Chr3 35823001 35844000 0 0 Deletion 20999 LOC_Os03g63430 proteasome subunit, putative, expressed FN3028-S Chr3 35823001 35844000 0 0 Deletion 20999 LOC_Os03g63440 frigida, putative, expressed FN3028-S Chr3 35823001 35844000 0 0 Deletion 20999 LOC_Os03g63820 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr3 3871001 3900000 0 0 Deletion 28999 LOC_Os03g07610 expressed protein FN3028-S Chr3 3871001 3900000 0 0 Deletion 28999 LOC_Os03g07620 expressed protein FN3028-S Chr3 3871001 3900000 0 0 Deletion 28999 LOC_Os03g07630 retrotransposon protein, putative, unclassified FN3028-S Chr3 3871001 3900000 0 0 Deletion 28999 LOC_Os03g07640 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr3 3871001 3900000 0 0 Deletion 28999 LOC_Os03g07650 expressed protein FN3028-S Chr3 3871001 3900000 0 0 Deletion 28999 LOC_Os03g07660 expressed protein FN3028-S Chr3 3871001 3900000 0 0 Deletion 28999 LOC_Os03g07670 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr3 3871001 3900000 0 0 Deletion 28999 LOC_Os03g09830 expressed protein FN3028-S Chr3 4892001 4919000 0 0 Deletion 26999 LOC_Os03g09840 C2 domain containing protein, putative, expressed FN3028-S Chr3 4892001 4919000 0 0 Deletion 26999 LOC_Os03g09850 auxin-responsive protein-related, putative, expressed FN3028-S Chr3 4892001 4919000 0 0 Deletion 26999 LOC_Os03g09860 acetyltransferase, GNAT family, putative, expressed FN3028-S Chr3 4892001 4919000 0 0 Deletion 26999 LOC_Os03g09870 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed FN3028-S Chr3 4892001 4919000 0 0 Deletion 26999 LOC_Os03g09880 AIR12, putative, expressed FN3028-S Chr3 4892001 4919000 0 0 Deletion 26999 LOC_Os03g09910 aminotransferase, classes I and II, domain containing protein, expressed FN3028-S Chr3 4929001 4950000 0 0 Deletion 20999 LOC_Os03g09920 RNase L inhibitor protein-related, putative, expressed FN3028-S Chr3 4929001 4950000 0 0 Deletion 20999 LOC_Os03g09930 sulfate transporter, putative, expressed FN3028-S Chr3 4929001 4950000 0 0 Deletion 20999 LOC_Os03g11460 expressed protein FN3028-S Chr3 5911001 5981000 0 0 Deletion 69999 LOC_Os03g11460 expressed protein FN3028-S Chr3 5911001 5981000 0 0 Deletion 69999 LOC_Os03g11470 DEAD/DEAH box helicase domain containing protein, expressed FN3028-S Chr3 5911001 5981000 0 0 Deletion 69999 LOC_Os03g11480 expressed protein FN3028-S Chr3 5911001 5981000 0 0 Deletion 69999 LOC_Os03g11490 expressed protein FN3028-S Chr3 5911001 5981000 0 0 Deletion 69999 LOC_Os03g11500 DUF647 domain containing protein, putative, expressed FN3028-S Chr3 5911001 5981000 0 0 Deletion 69999 LOC_Os03g11510 mitochondrial carrier protein, putative, expressed FN3028-S Chr3 5911001 5981000 0 0 Deletion 69999 LOC_Os03g11520 expressed protein FN3028-S Chr3 5911001 5981000 0 0 Deletion 69999 LOC_Os03g11530 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed FN3028-S Chr3 5911001 5981000 0 0 Deletion 69999 LOC_Os03g11540 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed FN3028-S Chr3 6273001 6297000 0 0 Deletion 23999 LOC_Os03g11970 tubulin/FtsZ domain containing protein, putative, expressed FN3028-S Chr3 6273001 6297000 0 0 Deletion 23999 LOC_Os03g11980 beta-hexosaminidase precursor, putative, expressed FN3028-S Chr3 6273001 6297000 0 0 Deletion 23999 LOC_Os03g11990 bolA, putative, expressed FN3028-S Chr3 6273001 6297000 0 0 Deletion 23999 LOC_Os03g12000 DEAD-box ATP-dependent RNA helicase, putative, expressed FN3028-S Chr3 6273001 6297000 0 0 Deletion 23999 LOC_Os03g12010 expressed protein FN3028-S Chr3 6273001 6297000 0 0 Deletion 23999 LOC_Os03g12020 50S ribosomal protein L15, chloroplast precursor, putative, expressed FN3028-S Chr3 6273001 6297000 0 0 Deletion 23999 LOC_Os03g12390 STE_MEK_ste7_MAP2K.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed FN3028-S Chr3 7836001 7871000 0 0 Deletion 34999 LOC_Os03g14420 cytochrome P450, putative, expressed FN3028-S Chr3 7836001 7871000 0 0 Deletion 34999 LOC_Os03g14430 expressed protein FN3028-S Chr3 7836001 7871000 0 0 Deletion 34999 LOC_Os03g14440 expressed protein FN3028-S Chr3 7836001 7871000 0 0 Deletion 34999 LOC_Os03g14450 enolase, putative, expressed FN3028-S Chr3 7836001 7871000 0 0 Deletion 34999 LOC_Os03g14460 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr3 7836001 7871000 0 0 Deletion 34999 LOC_Os03g14470 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr3 7836001 7871000 0 0 Deletion 34999 LOC_Os03g14480 hypothetical protein FN3028-S Chr3 7836001 7871000 0 0 Deletion 34999 LOC_Os03g14490 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr3 7836001 7871000 0 0 Deletion 34999 LOC_Os03g15580 AT hook motif family protein, expressed FN3028-S Chr3 8268304 8268305 0 0 Deletion 1 upstream_gene_variant HET FN3028-S Chr3 8582001 8594000 0 0 Deletion 11999 LOC_Os03g16880 DnaK family protein, putative, expressed FN3028-S Chr3 9379001 9408000 0 0 Deletion 28999 LOC_Os03g16890 N-acetylglucosaminyltransferase, putative, expressed FN3028-S Chr3 9379001 9408000 0 0 Deletion 28999 LOC_Os03g16900 rab GDP dissociation inhibitor alpha, putative, expressed FN3028-S Chr3 9379001 9408000 0 0 Deletion 28999 LOC_Os03g16910 SLT1 protein, putative, expressed FN3028-S Chr3 9379001 9408000 0 0 Deletion 28999 LOC_Os03g16940 glyoxalase family protein, putative, expressed FN3028-S Chr3 9769001 9812000 0 0 Deletion 42999 LOC_Os03g17590 cat eye syndrome critical region protein 5 precursor, putative, expressed FN3028-S Chr3 9769001 9812000 0 0 Deletion 42999 LOC_Os03g17600 expressed protein FN3028-S Chr3 9769001 9812000 0 0 Deletion 42999 LOC_Os03g17610 OsTOP6A3 - Topoisomerase 6 subunit A homolog 3, expressed FN3028-S Chr3 9769001 9812000 0 0 Deletion 42999 LOC_Os03g17634 PPR repeat domain containing protein, putative, expressed FN3028-S Chr3 9769001 9812000 0 0 Deletion 42999 LOC_Os03g19740 expressed protein FN3028-S Chr4 10204001 10281000 0 0 Deletion 76999 LOC_Os04g18480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 10204001 10281000 0 0 Deletion 76999 LOC_Os04g18490 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr4 10204001 10281000 0 0 Deletion 76999 LOC_Os04g18500 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 10204001 10281000 0 0 Deletion 76999 LOC_Os04g18510 retrotransposon protein, putative, unclassified FN3028-S Chr4 10204001 10281000 0 0 Deletion 76999 LOC_Os04g18520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 10204001 10281000 0 0 Deletion 76999 LOC_Os04g18530 expressed protein FN3028-S Chr4 10204001 10281000 0 0 Deletion 76999 LOC_Os04g18540 hAT dimerisation domain containing protein, putative, expressed FN3028-S Chr4 10204001 10281000 0 0 Deletion 76999 LOC_Os04g18550 expressed protein FN3028-S Chr4 10204001 10281000 0 0 Deletion 76999 LOC_Os04g18559 retrotransposon protein, putative, unclassified FN3028-S Chr4 10204001 10281000 0 0 Deletion 76999 LOC_Os04g18570 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 10204001 10281000 0 0 Deletion 76999 LOC_Os04g18580 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 10204001 10281000 0 0 Deletion 76999 LOC_Os04g18590 expressed protein FN3028-S Chr4 10204001 10281000 0 0 Deletion 76999 LOC_Os04g18600 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 10642001 10670000 0 0 Deletion 27999 LOC_Os04g19170 hypothetical protein FN3028-S Chr4 10642001 10670000 0 0 Deletion 27999 LOC_Os04g19180 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr4 10642001 10670000 0 0 Deletion 27999 LOC_Os04g19190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 10642001 10670000 0 0 Deletion 27999 LOC_Os04g19200 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 10642001 10670000 0 0 Deletion 27999 LOC_Os04g19310 expressed protein FN3028-S Chr4 10745001 10778000 0 0 Deletion 32999 LOC_Os04g19320 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 10745001 10778000 0 0 Deletion 32999 LOC_Os04g19330 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 10745001 10778000 0 0 Deletion 32999 LOC_Os04g19340 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 10745001 10778000 0 0 Deletion 32999 LOC_Os04g19350 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr4 10745001 10778000 0 0 Deletion 32999 LOC_Os04g19360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 10745001 10778000 0 0 Deletion 32999 LOC_Os04g19510 retrotransposon protein, putative, unclassified FN3028-S Chr4 11096001 11145000 0 0 Deletion 48999 LOC_Os04g19910 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 11096001 11145000 0 0 Deletion 48999 LOC_Os04g19920 OsFBL13 - F-box domain and LRR containing protein, expressed FN3028-S Chr4 11096001 11145000 0 0 Deletion 48999 LOC_Os04g19930 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr4 11096001 11145000 0 0 Deletion 48999 LOC_Os04g19940 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr4 11096001 11145000 0 0 Deletion 48999 LOC_Os04g19950 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr4 11096001 11145000 0 0 Deletion 48999 LOC_Os04g19960 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 11096001 11145000 0 0 Deletion 48999 LOC_Os04g19970 retrotransposon, putative, centromere-specific FN3028-S Chr4 11096001 11145000 0 0 Deletion 48999 LOC_Os04g19980 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 11096001 11145000 0 0 Deletion 48999 LOC_Os04g19990 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 11096001 11145000 0 0 Deletion 48999 LOC_Os04g20270 transcriptional regulator Sir2 family protein, putative, expressed FN3028-S Chr4 11316001 11338000 0 0 Deletion 21999 LOC_Os04g20280 expressed protein FN3028-S Chr4 11316001 11338000 0 0 Deletion 21999 LOC_Os04g20360 expressed protein FN3028-S Chr4 11395001 11423000 0 0 Deletion 27999 LOC_Os04g20370 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 11395001 11423000 0 0 Deletion 27999 LOC_Os04g20380 expressed protein FN3028-S Chr4 11395001 11423000 0 0 Deletion 27999 LOC_Os04g20390 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 11395001 11423000 0 0 Deletion 27999 LOC_Os04g20400 cytokinin-O-glucosyltransferase 1, putative, expressed FN3028-S Chr4 11395001 11423000 0 0 Deletion 27999 LOC_Os04g20410 expressed protein FN3028-S Chr4 11395001 11423000 0 0 Deletion 27999 LOC_Os04g20420 DNA binding protein, putative, expressed FN3028-S Chr4 11395001 11423000 0 0 Deletion 27999 LOC_Os04g20540 anthocyanidin 3-O-glucosyltransferase, putative, expressed FN3028-S Chr4 11468001 11543000 0 0 Deletion 74999 LOC_Os04g20550 expressed protein FN3028-S Chr4 11468001 11543000 0 0 Deletion 74999 LOC_Os04g20560 methyl-CpG binding domain containing protein, expressed FN3028-S Chr4 11468001 11543000 0 0 Deletion 74999 LOC_Os04g20570 retrotransposon protein, putative, unclassified FN3028-S Chr4 11468001 11543000 0 0 Deletion 74999 LOC_Os04g20590 YL1 nuclear protein C-terminal domain containing protein, expressed FN3028-S Chr4 11468001 11543000 0 0 Deletion 74999 LOC_Os04g20600 hypothetical protein FN3028-S Chr4 11468001 11543000 0 0 Deletion 74999 LOC_Os04g20610 zinc knuckle domain containing protein, expressed FN3028-S Chr4 11468001 11543000 0 0 Deletion 74999 LOC_Os04g20620 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr4 11468001 11543000 0 0 Deletion 74999 LOC_Os04g20990 tRNA-dihydrouridine synthase, putative, expressed FN3028-S Chr4 11808001 11824000 0 0 Deletion 15999 LOC_Os04g21010 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 11808001 11824000 0 0 Deletion 15999 LOC_Os04g21020 expressed protein FN3028-S Chr4 11808001 11824000 0 0 Deletion 15999 LOC_Os04g21100 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 11857001 11886000 0 0 Deletion 28999 LOC_Os04g21110 phosphoribulokinase/Uridine kinase family protein, expressed FN3028-S Chr4 11857001 11886000 0 0 Deletion 28999 LOC_Os04g21370 expressed protein FN3028-S Chr4 12224001 12256000 0 0 Deletion 31999 LOC_Os04g21620 hypothetical protein FN3028-S Chr4 12224001 12256000 0 0 Deletion 31999 LOC_Os04g21640 hypothetical protein FN3028-S Chr4 12224001 12256000 0 0 Deletion 31999 LOC_Os04g21650 expressed protein FN3028-S Chr4 12224001 12256000 0 0 Deletion 31999 LOC_Os04g21660 AAA-type ATPase family protein, putative, expressed FN3028-S Chr4 12224001 12256000 0 0 Deletion 31999 LOC_Os04g21690 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21700 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21705 PB1 domain containing protein, expressed FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21710 expressed protein FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21720 N2, N2-dimethylguanosine tRNA methyltransferase, putative, expressed FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21730 XH domain containing protein FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21740 expressed protein FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21780 expressed protein FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21790 OsWAK34 - OsWAK receptor-like protein kinase, expressed FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21800 retrotransposon protein, putative, LINE subclass FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21810 transposon protein, putative, unclassified, expressed FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21820 OsWAK33 - OsWAK receptor-like protein OsWAK-RLP, expressed FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21830 hypothetical protein FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21840 expressed protein FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21850 expressed protein FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21860 transposon protein, putative, Pong sub-class, expressed FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21870 transposon protein, putative, Pong sub-class, expressed FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21880 expressed protein FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21890 disease resistance protein RPM1, putative, expressed FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21900 expressed protein FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21910 pentatricopeptide, putative, expressed FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21920 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21930 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21940 expressed protein FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21950 WRKY51, expressed FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21960 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21970 retrotransposon protein, putative, unclassified FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21980 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g21990 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g22000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g22010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g22020 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g22030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g22040 hypothetical protein FN3028-S Chr4 12272001 12483000 0 0 Deletion 210999 LOC_Os04g22060 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 12487001 12513000 0 0 Deletion 25999 LOC_Os04g22070 expressed protein FN3028-S Chr4 12487001 12513000 0 0 Deletion 25999 LOC_Os04g22080 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 12487001 12513000 0 0 Deletion 25999 LOC_Os04g22090 NB-ARC domain containing protein, expressed FN3028-S Chr4 12487001 12513000 0 0 Deletion 25999 LOC_Os04g22170 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr4 12558001 12624000 0 0 Deletion 65999 LOC_Os04g22180 expressed protein FN3028-S Chr4 12558001 12624000 0 0 Deletion 65999 LOC_Os04g22190 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr4 12558001 12624000 0 0 Deletion 65999 LOC_Os04g22200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 12558001 12624000 0 0 Deletion 65999 LOC_Os04g22210 SCP-like extracellular protein, expressed FN3028-S Chr4 12558001 12624000 0 0 Deletion 65999 LOC_Os04g22220 SCP-like extracellular protein, expressed FN3028-S Chr4 12558001 12624000 0 0 Deletion 65999 LOC_Os04g22230 SCP-like extracellular protein, expressed FN3028-S Chr4 12558001 12624000 0 0 Deletion 65999 LOC_Os04g22235 expressed protein FN3028-S Chr4 12558001 12624000 0 0 Deletion 65999 LOC_Os04g22240 zinc finger, C3HC4 type domain containing protein, expressed FN3028-S Chr4 12558001 12624000 0 0 Deletion 65999 LOC_Os04g22250 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr4 12558001 12624000 0 0 Deletion 65999 LOC_Os04g22260 expressed protein FN3028-S Chr4 12558001 12624000 0 0 Deletion 65999 LOC_Os04g22270 expressed protein FN3028-S Chr4 12558001 12624000 0 0 Deletion 65999 LOC_Os04g22280 hypothetical protein FN3028-S Chr4 12558001 12624000 0 0 Deletion 65999 LOC_Os04g22290 expressed protein FN3028-S Chr4 12558001 12624000 0 0 Deletion 65999 LOC_Os04g22300 expressed protein FN3028-S Chr4 12631001 12720000 0 0 Deletion 88999 LOC_Os04g22320 hypothetical protein FN3028-S Chr4 12631001 12720000 0 0 Deletion 88999 LOC_Os04g22330 SCP-like extracellular protein, expressed FN3028-S Chr4 12631001 12720000 0 0 Deletion 88999 LOC_Os04g22340 SCP-like extracellular protein, expressed FN3028-S Chr4 12631001 12720000 0 0 Deletion 88999 LOC_Os04g22350 expressed protein FN3028-S Chr4 12631001 12720000 0 0 Deletion 88999 LOC_Os04g22360 DUF647 domain containing protein, putative, expressed FN3028-S Chr4 12631001 12720000 0 0 Deletion 88999 LOC_Os04g22370 transposon protein, putative, unclassified FN3028-S Chr4 12631001 12720000 0 0 Deletion 88999 LOC_Os04g22380 short chain dehydrogenase/reductase protein, putative, expressed FN3028-S Chr4 12631001 12720000 0 0 Deletion 88999 LOC_Os04g22390 short chain dehydrogenase/reductase protein, putative, expressed FN3028-S Chr4 12631001 12720000 0 0 Deletion 88999 LOC_Os04g22400 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr4 12631001 12720000 0 0 Deletion 88999 LOC_Os04g22410 expressed protein FN3028-S Chr4 12631001 12720000 0 0 Deletion 88999 LOC_Os04g22420 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 12631001 12720000 0 0 Deletion 88999 LOC_Os04g22430 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 12631001 12720000 0 0 Deletion 88999 LOC_Os04g22440 expressed protein FN3028-S Chr4 12631001 12720000 0 0 Deletion 88999 LOC_Os04g22450 expressed protein FN3028-S Chr4 12631001 12720000 0 0 Deletion 88999 LOC_Os04g22460 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 12631001 12720000 0 0 Deletion 88999 LOC_Os04g22470 SHR5-receptor-like kinase, putative, expressed FN3028-S Chr4 12763001 12778000 0 0 Deletion 14999 LOC_Os04g22560 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 12763001 12778000 0 0 Deletion 14999 LOC_Os04g22570 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 12763001 12778000 0 0 Deletion 14999 LOC_Os04g22600 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 12798001 12828000 0 0 Deletion 29999 LOC_Os04g22610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 12798001 12828000 0 0 Deletion 29999 LOC_Os04g22620 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr4 12798001 12828000 0 0 Deletion 29999 LOC_Os04g22630 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 12798001 12828000 0 0 Deletion 29999 LOC_Os04g22640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 12798001 12828000 0 0 Deletion 29999 LOC_Os04g23240 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 13264001 13301000 0 0 Deletion 36999 LOC_Os04g23260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 13264001 13301000 0 0 Deletion 36999 LOC_Os04g23270 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 13264001 13301000 0 0 Deletion 36999 LOC_Os04g23280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 13264001 13301000 0 0 Deletion 36999 LOC_Os04g23290 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 13264001 13301000 0 0 Deletion 36999 LOC_Os04g23300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 13264001 13301000 0 0 Deletion 36999 LOC_Os04g23520 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 13275191 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g23260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 13453001 13528000 0 0 Deletion 74999 LOC_Os04g23530 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 13453001 13528000 0 0 Deletion 74999 LOC_Os04g23550 basic helix-loop-helix family protein, putative, expressed FN3028-S Chr4 13453001 13528000 0 0 Deletion 74999 LOC_Os04g23570 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 13453001 13528000 0 0 Deletion 74999 LOC_Os04g23580 xylosyltransferase, putative, expressed FN3028-S Chr4 13453001 13528000 0 0 Deletion 74999 LOC_Os04g23590 hypothetical protein FN3028-S Chr4 13453001 13528000 0 0 Deletion 74999 LOC_Os04g23600 D-mannose binding lectin family protein, expressed FN3028-S Chr4 13453001 13528000 0 0 Deletion 74999 LOC_Os04g23610 expressed protein FN3028-S Chr4 13453001 13528000 0 0 Deletion 74999 LOC_Os04g23620 D-mannose binding lectin family protein, expressed FN3028-S Chr4 13453001 13528000 0 0 Deletion 74999 LOC_Os04g23630 expressed protein FN3028-S Chr4 13453001 13528000 0 0 Deletion 74999 LOC_Os04g24580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 14235001 14258000 0 0 Deletion 22999 LOC_Os04g24790 OsMADS81 - MADS-box family gene with M-gamma type-box, expressed FN3028-S Chr4 14235001 14258000 0 0 Deletion 22999 LOC_Os04g24800 OsMADS82 - MADS-box family gene with M-gamma type-box, expressed FN3028-S Chr4 14235001 14258000 0 0 Deletion 22999 LOC_Os04g24804 expressed protein FN3028-S Chr4 14235001 14258000 0 0 Deletion 22999 LOC_Os04g25890 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 1436001 1451000 0 0 Deletion 14999 LOC_Os04g03350 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 1436001 1451000 0 0 Deletion 14999 LOC_Os04g03360 jacalin-like lectin domain containing protein, expressed FN3028-S Chr4 1436001 1451000 0 0 Deletion 14999 LOC_Os04g03370 cysteine-rich receptor-like protein kinase 41 precursor, putative, expressed FN3028-S Chr4 1481001 1501000 0 0 Deletion 19999 LOC_Os04g03450 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 1481001 1501000 0 0 Deletion 19999 LOC_Os04g03460 retrotransposon protein, putative, unclassified FN3028-S Chr4 1481001 1501000 0 0 Deletion 19999 LOC_Os04g03470 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 15054001 15079000 0 0 Deletion 24999 LOC_Os04g25900 go35 NBS-LRR, putative, expressed FN3028-S Chr4 15054001 15079000 0 0 Deletion 24999 LOC_Os04g25910 hypothetical protein FN3028-S Chr4 15054001 15079000 0 0 Deletion 24999 LOC_Os04g25920 OsMADS85 - MADS-box family gene with M-gamma type-box, expressed FN3028-S Chr4 15054001 15079000 0 0 Deletion 24999 LOC_Os04g26800 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 15804001 15833000 0 0 Deletion 28999 LOC_Os04g26940 retrotransposon protein, putative, unclassified FN3028-S Chr4 15934001 15975000 0 0 Deletion 40999 LOC_Os04g26950 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 15934001 15975000 0 0 Deletion 40999 LOC_Os04g26960 terpene synthase, putative, expressed FN3028-S Chr4 15934001 15975000 0 0 Deletion 40999 LOC_Os04g26970 retrotransposon protein, putative, unclassified FN3028-S Chr4 15934001 15975000 0 0 Deletion 40999 LOC_Os04g26980 terpene synthase, putative, expressed FN3028-S Chr4 15934001 15975000 0 0 Deletion 40999 LOC_Os04g26994 retrotransposon protein, putative, unclassified FN3028-S Chr4 16022001 16077000 0 0 Deletion 54999 LOC_Os04g27094 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 16022001 16077000 0 0 Deletion 54999 LOC_Os04g27096 expressed protein FN3028-S Chr4 16022001 16077000 0 0 Deletion 54999 LOC_Os04g27160 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr4 16022001 16077000 0 0 Deletion 54999 LOC_Os04g27170 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr4 16022001 16077000 0 0 Deletion 54999 LOC_Os04g27180 expressed protein FN3028-S Chr4 16022001 16077000 0 0 Deletion 54999 LOC_Os04g27190 terpene synthase, putative, expressed FN3028-S Chr4 16022001 16077000 0 0 Deletion 54999 LOC_Os04g27200 expressed protein FN3028-S Chr4 16022001 16077000 0 0 Deletion 54999 LOC_Os04g27320 transposon protein, putative, unclassified FN3028-S Chr4 16147001 16175000 0 0 Deletion 27999 LOC_Os04g27330 hypothetical protein FN3028-S Chr4 16147001 16175000 0 0 Deletion 27999 LOC_Os04g27340 terpene synthase, putative, expressed FN3028-S Chr4 16147001 16175000 0 0 Deletion 27999 LOC_Os04g27350 retrotransposon protein, putative, LINE subclass FN3028-S Chr4 16147001 16175000 0 0 Deletion 27999 LOC_Os04g27360 retrotransposon protein, putative, unclassified FN3028-S Chr4 16147001 16175000 0 0 Deletion 27999 LOC_Os04g27370 hypothetical protein FN3028-S Chr4 16147001 16175000 0 0 Deletion 27999 LOC_Os04g27420 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 16206001 16221000 0 0 Deletion 14999 LOC_Os04g27430 terpene synthase, putative, expressed FN3028-S Chr4 16206001 16221000 0 0 Deletion 14999 LOC_Os04g28100 spotted leaf 11, putative, expressed FN3028-S Chr4 16328110 16328111 0 0 Deletion 1 upstream_gene_variant HET FN3028-S Chr4 1632906 1632907 0 0 Deletion 1 upstream_gene_variant HET FN3028-S Chr4 16594001 16620000 0 0 Deletion 25999 LOC_Os04g28130 two-component response regulator, putative, expressed FN3028-S Chr4 16594001 16620000 0 0 Deletion 25999 LOC_Os04g28580 transposon protein, putative, unclassified, expressed FN3028-S Chr4 1661001 1676000 0 0 Deletion 14999 FN3028-S Chr4 16920001 16952000 0 0 Deletion 31999 LOC_Os04g28590 expressed protein FN3028-S Chr4 16920001 16952000 0 0 Deletion 31999 LOC_Os04g28600 male sterility protein, putative, expressed FN3028-S Chr4 16920001 16952000 0 0 Deletion 31999 LOC_Os04g28620 male sterility protein, putative, expressed FN3028-S Chr4 17237001 17281000 0 0 Deletion 43999 LOC_Os04g29090 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed FN3028-S Chr4 17237001 17281000 0 0 Deletion 43999 LOC_Os04g29100 hypothetical protein FN3028-S Chr4 17237001 17281000 0 0 Deletion 43999 LOC_Os04g29110 hypothetical protein FN3028-S Chr4 17237001 17281000 0 0 Deletion 43999 LOC_Os04g29120 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 17237001 17281000 0 0 Deletion 43999 LOC_Os04g29300 retrotransposon protein, putative, unclassified FN3028-S Chr4 17369001 17421000 0 0 Deletion 51999 LOC_Os04g29310 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 17369001 17421000 0 0 Deletion 51999 LOC_Os04g29330 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 17369001 17421000 0 0 Deletion 51999 LOC_Os04g29360 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 17438001 17493000 0 0 Deletion 54999 LOC_Os04g29370 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 17438001 17493000 0 0 Deletion 54999 LOC_Os04g29380 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 17438001 17493000 0 0 Deletion 54999 LOC_Os04g29400 hypothetical protein FN3028-S Chr4 17438001 17493000 0 0 Deletion 54999 LOC_Os04g29410 expressed protein FN3028-S Chr4 17438001 17493000 0 0 Deletion 54999 LOC_Os04g29424 retrotransposon protein, putative, LINE subclass, expressed FN3028-S Chr4 17438001 17493000 0 0 Deletion 54999 LOC_Os04g29440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 17497001 17526000 0 0 Deletion 28999 LOC_Os04g29450 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 17497001 17526000 0 0 Deletion 28999 LOC_Os04g29469 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 17497001 17526000 0 0 Deletion 28999 LOC_Os04g30610 disease resistance protein RGA2, putative, expressed FN3028-S Chr4 18282001 18301000 0 0 Deletion 18999 LOC_Os04g30630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 18282001 18301000 0 0 Deletion 18999 LOC_Os04g30640 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr4 18282001 18301000 0 0 Deletion 18999 LOC_Os04g30660 NBS type disease resistance protein, putative, expressed FN3028-S Chr4 18319001 18352000 0 0 Deletion 32999 LOC_Os04g30670 expressed protein FN3028-S Chr4 18319001 18352000 0 0 Deletion 32999 LOC_Os04g30680 expressed protein FN3028-S Chr4 18319001 18352000 0 0 Deletion 32999 LOC_Os04g30690 NBS type disease resistance protein, putative, expressed FN3028-S Chr4 18319001 18352000 0 0 Deletion 32999 LOC_Os04g31080 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr4 18569001 18587000 0 0 Deletion 17999 LOC_Os04g31140 expressed protein FN3028-S Chr4 18619001 18641000 0 0 Deletion 21999 LOC_Os04g31150 hypothetical protein FN3028-S Chr4 18619001 18641000 0 0 Deletion 21999 LOC_Os04g31160 hypothetical protein FN3028-S Chr4 18619001 18641000 0 0 Deletion 21999 LOC_Os04g31170 expressed protein FN3028-S Chr4 18619001 18641000 0 0 Deletion 21999 LOC_Os04g31180 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 18653001 18710000 0 0 Deletion 56999 LOC_Os04g31190 dynamin family protein, putative, expressed FN3028-S Chr4 18653001 18710000 0 0 Deletion 56999 LOC_Os04g31200 hypothetical protein FN3028-S Chr4 18653001 18710000 0 0 Deletion 56999 LOC_Os04g31210 bile acid sodium symporter family protein, putative, expressed FN3028-S Chr4 18653001 18710000 0 0 Deletion 56999 LOC_Os04g31220 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr4 18653001 18710000 0 0 Deletion 56999 LOC_Os04g31230 expressed protein FN3028-S Chr4 18653001 18710000 0 0 Deletion 56999 LOC_Os04g31240 hydrolase, alpha/beta fold family protein, putative, expressed FN3028-S Chr4 18653001 18710000 0 0 Deletion 56999 LOC_Os04g31250 DEFL49 - Defensin and Defensin-like DEFL family, expressed FN3028-S Chr4 18653001 18710000 0 0 Deletion 56999 LOC_Os04g31260 hypothetical protein FN3028-S Chr4 18653001 18710000 0 0 Deletion 56999 LOC_Os04g31270 EMB1688, putative, expressed FN3028-S Chr4 18653001 18710000 0 0 Deletion 56999 LOC_Os04g32970 OTU-like cysteine protease family protein, putative, expressed FN3028-S Chr4 1945001 1982000 0 0 Deletion 36999 LOC_Os04g04190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 1945001 1982000 0 0 Deletion 36999 LOC_Os04g04200 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 1945001 1982000 0 0 Deletion 36999 LOC_Os04g04210 expressed protein FN3028-S Chr4 1945001 1982000 0 0 Deletion 36999 LOC_Os04g04220 transposon protein, putative, unclassified, expressed FN3028-S Chr4 1945001 1982000 0 0 Deletion 36999 LOC_Os04g04230 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed FN3028-S Chr4 1945001 1982000 0 0 Deletion 36999 LOC_Os04g04240 sterol 3-beta-glucosyltransferase, putative, expressed FN3028-S Chr4 1945001 1982000 0 0 Deletion 36999 LOC_Os04g04410 expressed protein FN3028-S Chr4 19934001 19976000 0 0 Deletion 41999 LOC_Os04g32980 protein binding protein, putative, expressed FN3028-S Chr4 19934001 19976000 0 0 Deletion 41999 LOC_Os04g33010 transposon protein, putative, unclassified, expressed FN3028-S Chr4 19934001 19976000 0 0 Deletion 41999 LOC_Os04g33990 harpin-induced protein 1 domain containing protein, expressed FN3028-S Chr4 20576001 20594000 0 0 Deletion 17999 LOC_Os04g34000 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed FN3028-S Chr4 20576001 20594000 0 0 Deletion 17999 LOC_Os04g34010 aluminum-activated malate transporter, putative, expressed FN3028-S Chr4 20576001 20594000 0 0 Deletion 17999 LOC_Os04g34850 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr4 20755843 20755843 0 0 Insertion 1 upstream_gene_variant HET FN3028-S Chr4 21136001 21152000 0 0 Deletion 15999 LOC_Os04g34860 expressed protein FN3028-S Chr4 21136001 21152000 0 0 Deletion 15999 LOC_Os04g35590 thioesterase family protein, putative, expressed FN3028-S Chr4 21215831 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3028-S Chr4 21694001 21716000 0 0 Deletion 21999 LOC_Os04g35600 OsPDIL1-2 protein disulfide isomerase PDIL1-2, expressed FN3028-S Chr4 21694001 21716000 0 0 Deletion 21999 LOC_Os04g35610 pentatricopeptide, putative, expressed FN3028-S Chr4 21694001 21716000 0 0 Deletion 21999 LOC_Os04g35620 expressed protein FN3028-S Chr4 21694001 21716000 0 0 Deletion 21999 LOC_Os04g35630 expressed protein FN3028-S Chr4 21694001 21716000 0 0 Deletion 21999 LOC_Os04g37950 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed FN3028-S Chr4 21970372 21970373 0 0 Deletion 1 INTERGENIC HET FN3028-S Chr4 22571001 22598000 0 0 Deletion 26999 LOC_Os04g37960 synaptonemal complex protein 2, putative, expressed FN3028-S Chr4 22571001 22598000 0 0 Deletion 26999 LOC_Os04g37970 transporter family protein, putative, expressed FN3028-S Chr4 22571001 22598000 0 0 Deletion 26999 LOC_Os04g38780 transcription factor, putative, expressed FN3028-S Chr4 23043001 23064000 0 0 Deletion 20999 LOC_Os04g38790 expressed protein FN3028-S Chr4 23043001 23064000 0 0 Deletion 20999 LOC_Os04g41350 amino acid transporter, putative, expressed FN3028-S Chr4 2384001 2429000 0 0 Deletion 44999 LOC_Os04g04950 copper methylamine oxidase precursor, putative, expressed FN3028-S Chr4 2384001 2429000 0 0 Deletion 44999 LOC_Os04g04970 expressed protein FN3028-S Chr4 2384001 2429000 0 0 Deletion 44999 LOC_Os04g04980 pyridoxal-dependent decarboxylase protein, putative, expressed FN3028-S Chr4 2384001 2429000 0 0 Deletion 44999 LOC_Os04g04990 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr4 2384001 2429000 0 0 Deletion 44999 LOC_Os04g04999 expressed protein FN3028-S Chr4 2384001 2429000 0 0 Deletion 44999 LOC_Os04g05010 CBS domain containing membrane protein, putative, expressed FN3028-S Chr4 2384001 2429000 0 0 Deletion 44999 LOC_Os04g05970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 24535001 24562000 0 0 Deletion 26999 LOC_Os04g41360 expressed protein FN3028-S Chr4 24535001 24562000 0 0 Deletion 26999 LOC_Os04g41370 Leucine Rich Repeat family protein, expressed FN3028-S Chr4 24535001 24562000 0 0 Deletion 26999 LOC_Os04g41380 Leucine Rich Repeat family protein, expressed FN3028-S Chr4 24535001 24562000 0 0 Deletion 26999 LOC_Os04g41390 expressed protein FN3028-S Chr4 24535001 24562000 0 0 Deletion 26999 LOC_Os04g41400 peptide transporter PTR2, putative, expressed FN3028-S Chr4 24535001 24562000 0 0 Deletion 26999 LOC_Os04g41410 expressed protein FN3028-S Chr4 24535001 24562000 0 0 Deletion 26999 LOC_Os04g41430 retrotransposon protein, putative, unclassified FN3028-S Chr4 24535001 24562000 0 0 Deletion 26999 LOC_Os04g41450 TGF-beta receptor, type I/II extracellular region, putative, expressed FN3028-S Chr4 24535001 24562000 0 0 Deletion 26999 LOC_Os04g41710 expressed protein FN3028-S Chr4 24727001 24756000 0 0 Deletion 28999 LOC_Os04g41720 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr4 24727001 24756000 0 0 Deletion 28999 LOC_Os04g41730 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr4 24727001 24756000 0 0 Deletion 28999 LOC_Os04g41740 expressed protein FN3028-S Chr4 24727001 24756000 0 0 Deletion 28999 LOC_Os04g41750 expressed protein FN3028-S Chr4 24727001 24756000 0 0 Deletion 28999 LOC_Os04g41759 expressed protein FN3028-S Chr4 24727001 24756000 0 0 Deletion 28999 LOC_Os04g41770 expressed protein FN3028-S Chr4 24727001 24756000 0 0 Deletion 28999 LOC_Os04g42399 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr4 25081001 25099000 0 0 Deletion 17999 LOC_Os04g42840 HEAT repeat family protein, putative, expressed FN3028-S Chr4 25358001 25377000 0 0 Deletion 18999 LOC_Os04g42850 expressed protein FN3028-S Chr4 25358001 25377000 0 0 Deletion 18999 LOC_Os04g42860 GDSL-like lipase/acylhydrolase, putative, expressed FN3028-S Chr4 25358001 25377000 0 0 Deletion 18999 LOC_Os04g42870 methyltransferase domain containing protein, putative, expressed FN3028-S Chr4 25358001 25377000 0 0 Deletion 18999 LOC_Os04g42880 WD domain, G-beta repeat domain containing protein, expressed FN3028-S Chr4 25358001 25377000 0 0 Deletion 18999 LOC_Os04g43410 Os4bglu18 - monolignol beta-glucoside homologue, expressed FN3028-S Chr4 25701001 25738000 0 0 Deletion 36999 LOC_Os04g43420 PTAC5, putative, expressed FN3028-S Chr4 25701001 25738000 0 0 Deletion 36999 LOC_Os04g43430 pentatricopeptide, putative, expressed FN3028-S Chr4 25701001 25738000 0 0 Deletion 36999 LOC_Os04g43440 NB-ARC/LRR disease resistance protein, putative, expressed FN3028-S Chr4 25701001 25738000 0 0 Deletion 36999 LOC_Os04g43450 expressed protein FN3028-S Chr4 25701001 25738000 0 0 Deletion 36999 LOC_Os04g43464 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 25701001 25738000 0 0 Deletion 36999 LOC_Os04g43480 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 25701001 25738000 0 0 Deletion 36999 LOC_Os04g43490 CK1_CaseinKinase_1.7 - CK1 includes the casein kinase 1 kinases, expressed FN3028-S Chr4 25701001 25738000 0 0 Deletion 36999 LOC_Os04g43500 transposon protein, putative, unclassified FN3028-S Chr4 25701001 25738000 0 0 Deletion 36999 LOC_Os04g43750 kinase, pfkB family, putative, expressed FN3028-S Chr4 25898001 25915000 0 0 Deletion 16999 LOC_Os04g43760 phenylalanine ammonia-lyase, putative, expressed FN3028-S Chr4 25898001 25915000 0 0 Deletion 16999 LOC_Os04g43770 expressed protein FN3028-S Chr4 25898001 25915000 0 0 Deletion 16999 LOC_Os04g44000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 25948023 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3028-S Chr4 26078001 26109000 0 0 Deletion 30999 LOC_Os04g44010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 26078001 26109000 0 0 Deletion 30999 LOC_Os04g44020 expressed protein FN3028-S Chr4 26078001 26109000 0 0 Deletion 30999 LOC_Os04g44030 PPR repeat domain containing protein, putative, expressed FN3028-S Chr4 26078001 26109000 0 0 Deletion 30999 LOC_Os04g44050 expressed protein FN3028-S Chr4 26078001 26109000 0 0 Deletion 30999 LOC_Os04g44060 aquaporin protein, putative, expressed FN3028-S Chr4 26078001 26109000 0 0 Deletion 30999 LOC_Os04g44070 expressed protein FN3028-S Chr4 26078001 26109000 0 0 Deletion 30999 LOC_Os04g44080 expressed protein FN3028-S Chr4 26078001 26109000 0 0 Deletion 30999 LOC_Os04g44090 expressed protein FN3028-S Chr4 26078001 26109000 0 0 Deletion 30999 LOC_Os04g45040 DEAD-box ATP-dependent RNA helicase, putative, expressed FN3028-S Chr4 26649001 26668000 0 0 Deletion 18999 LOC_Os04g45050 hypothetical protein FN3028-S Chr4 26649001 26668000 0 0 Deletion 18999 LOC_Os04g45060 MYB family transcription factor, putative, expressed FN3028-S Chr4 26649001 26668000 0 0 Deletion 18999 LOC_Os04g45070 remorin, putative, expressed FN3028-S Chr4 26649001 26668000 0 0 Deletion 18999 LOC_Os04g46550 hypothetical protein FN3028-S Chr4 27076813 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3028-S Chr4 27598001 27621000 0 0 Deletion 22999 LOC_Os04g46560 lactate/malate dehydrogenase, putative, expressed FN3028-S Chr4 27598001 27621000 0 0 Deletion 22999 LOC_Os04g46570 growth regulator related protein, putative, expressed FN3028-S Chr4 27598001 27621000 0 0 Deletion 22999 LOC_Os04g46580 OsSPL7 - SBP-box gene family member, expressed FN3028-S Chr4 27598001 27621000 0 0 Deletion 22999 LOC_Os04g46690 transposon protein, putative, unclassified, expressed FN3028-S Chr4 27687001 27710000 0 0 Deletion 22999 LOC_Os04g46700 ABC family transporter: toluene tolerance, putative, expressed FN3028-S Chr4 27687001 27710000 0 0 Deletion 22999 LOC_Os04g46710 thioesterase family protein, putative, expressed FN3028-S Chr4 27687001 27710000 0 0 Deletion 22999 LOC_Os04g46720 transposon protein, putative, unclassified FN3028-S Chr4 27687001 27710000 0 0 Deletion 22999 LOC_Os04g46730 thioesterase family protein, putative, expressed FN3028-S Chr4 27687001 27710000 0 0 Deletion 22999 LOC_Os04g46740 pectinesterase, putative, expressed FN3028-S Chr4 27687001 27710000 0 0 Deletion 22999 LOC_Os04g47590 niemann-Pick C1 protein precursor, putative, expressed FN3028-S Chr4 28225001 28258000 0 0 Deletion 32999 LOC_Os04g47600 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr4 28225001 28258000 0 0 Deletion 32999 LOC_Os04g47820 expressed protein FN3028-S Chr4 28373001 28394000 0 0 Deletion 20999 LOC_Os04g47830 SNF2 family N-terminal domain containing protein, expressed FN3028-S Chr4 28373001 28394000 0 0 Deletion 20999 LOC_Os04g47840 expressed protein FN3028-S Chr4 28720001 28745000 0 0 Deletion 24999 LOC_Os04g48220 expressed protein FN3028-S Chr4 28720001 28745000 0 0 Deletion 24999 LOC_Os04g48230 dehydration response related protein, putative, expressed FN3028-S Chr4 28720001 28745000 0 0 Deletion 24999 LOC_Os04g48240 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 28720001 28745000 0 0 Deletion 24999 LOC_Os04g48250 expressed protein FN3028-S Chr4 28720001 28745000 0 0 Deletion 24999 LOC_Os04g48260 zinc RING finger protein, putative, expressed FN3028-S Chr4 28720001 28745000 0 0 Deletion 24999 LOC_Os04g49270 tRNA-splicing endonuclease positive effector-related, putative, expressed FN3028-S Chr4 29410001 29433000 0 0 Deletion 22999 LOC_Os04g49280 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 29410001 29433000 0 0 Deletion 22999 LOC_Os04g49290 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 29410001 29433000 0 0 Deletion 22999 LOC_Os04g49300 retrotransposon protein, putative, LINE subclass, expressed FN3028-S Chr4 29410001 29433000 0 0 Deletion 22999 LOC_Os04g49310 tRNA-splicing endonuclease positive effector-related, putative, expressed FN3028-S Chr4 29410001 29433000 0 0 Deletion 22999 LOC_Os04g49500 U-box domain-containing protein, putative, expressed FN3028-S Chr4 29527001 29547000 0 0 Deletion 19999 LOC_Os04g49510 CAMK_CAMK_like.27 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN3028-S Chr4 29527001 29547000 0 0 Deletion 19999 LOC_Os04g49520 pentatricopeptide repeat protein PPR868-14, putative, expressed FN3028-S Chr4 29527001 29547000 0 0 Deletion 19999 LOC_Os04g49530 expressed protein FN3028-S Chr4 29527001 29547000 0 0 Deletion 19999 LOC_Os04g49540 expressed protein FN3028-S Chr4 29527001 29547000 0 0 Deletion 19999 LOC_Os04g50990 L11 domain containing ribosomal protein, putative, expressed FN3028-S Chr4 2988804 Chr1 29749611 0 Translocation 0 FN3028-S Chr4 30179001 30223000 0 0 Deletion 43999 LOC_Os04g51000 transcription factor FL, putative, expressed FN3028-S Chr4 30179001 30223000 0 0 Deletion 43999 LOC_Os04g51009 OsWAK52 - OsWAK short gene, expressed FN3028-S Chr4 30179001 30223000 0 0 Deletion 43999 LOC_Os04g51020 hypothetical protein FN3028-S Chr4 30179001 30223000 0 0 Deletion 43999 LOC_Os04g51030 wall-associated kinase 1, putative, expressed FN3028-S Chr4 30179001 30223000 0 0 Deletion 43999 LOC_Os04g51040 OsWAK50 - OsWAK receptor-like protein kinase, expressed FN3028-S Chr4 30179001 30223000 0 0 Deletion 43999 LOC_Os04g51050 OsWAK53b - OsWAK receptor-like protein kinase, expressed FN3028-S Chr4 30179001 30223000 0 0 Deletion 43999 LOC_Os04g51090 tRNA-splicing endonuclease positive effector-related, putative, expressed FN3028-S Chr4 30259001 30272000 0 0 Deletion 12999 LOC_Os04g51100 COBW domain containing protein, putative, expressed FN3028-S Chr4 30259001 30272000 0 0 Deletion 12999 LOC_Os04g51110 WD repeat-containing protein, putative, expressed FN3028-S Chr4 30259001 30272000 0 0 Deletion 12999 LOC_Os04g51120 ENTH domain containing protein, expressed FN3028-S Chr4 30259001 30272000 0 0 Deletion 12999 LOC_Os04g51620 expressed protein FN3028-S Chr4 30593001 30626000 0 0 Deletion 32999 LOC_Os04g51630 60S ribosomal protein L7, putative, expressed FN3028-S Chr4 30593001 30626000 0 0 Deletion 32999 LOC_Os04g51640 expressed protein FN3028-S Chr4 30593001 30626000 0 0 Deletion 32999 LOC_Os04g51650 expressed protein FN3028-S Chr4 30593001 30626000 0 0 Deletion 32999 LOC_Os04g51660 transferase family protein, putative, expressed FN3028-S Chr4 30593001 30626000 0 0 Deletion 32999 LOC_Os04g51680 expressed protein FN3028-S Chr4 30593001 30626000 0 0 Deletion 32999 LOC_Os04g51690 glycosyl hydrolase family 47 domain contain protein, expressed FN3028-S Chr4 30593001 30626000 0 0 Deletion 32999 LOC_Os04g51809 expressed protein FN3028-S Chr4 30711001 30769000 0 0 Deletion 57999 LOC_Os04g51820 OsHKT1;1 - Na+ transporter, expressed FN3028-S Chr4 30711001 30769000 0 0 Deletion 57999 LOC_Os04g51830 OsHKT1;4 - Na+ transporter, expressed FN3028-S Chr4 30711001 30769000 0 0 Deletion 57999 LOC_Os04g51840 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 30711001 30769000 0 0 Deletion 57999 LOC_Os04g51850 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr4 30711001 30769000 0 0 Deletion 57999 LOC_Os04g51860 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 30711001 30769000 0 0 Deletion 57999 LOC_Os04g51870 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 30711001 30769000 0 0 Deletion 57999 LOC_Os04g51880 GHMP kinases ATP-binding protein, putative, expressed FN3028-S Chr4 30711001 30769000 0 0 Deletion 57999 LOC_Os04g52020 PHD-finger domain containing protein, putative, expressed FN3028-S Chr4 3089001 3152000 0 0 Deletion 62999 LOC_Os04g05980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 3089001 3152000 0 0 Deletion 62999 LOC_Os04g05990 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr4 3089001 3152000 0 0 Deletion 62999 LOC_Os04g06000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 3089001 3152000 0 0 Deletion 62999 LOC_Os04g06010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 3089001 3152000 0 0 Deletion 62999 LOC_Os04g06020 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr4 3089001 3152000 0 0 Deletion 62999 LOC_Os04g06030 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 3089001 3152000 0 0 Deletion 62999 LOC_Os04g06050 expressed protein FN3028-S Chr4 3089001 3152000 0 0 Deletion 62999 LOC_Os04g06070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 3089001 3152000 0 0 Deletion 62999 LOC_Os04g06600 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 30898001 30917000 0 0 Deletion 18999 LOC_Os04g52030 zinc finger domain, LSD1 subclass family protein, expressed FN3028-S Chr4 30898001 30917000 0 0 Deletion 18999 LOC_Os04g52040 TNP1, putative, expressed FN3028-S Chr4 30898001 30917000 0 0 Deletion 18999 LOC_Os04g52050 TNP1, putative, expressed FN3028-S Chr4 30898001 30917000 0 0 Deletion 18999 LOC_Os04g53370 acyltransferase, putative, expressed FN3028-S Chr4 31787001 31811000 0 0 Deletion 23999 LOC_Os04g53380 expressed protein FN3028-S Chr4 31787001 31811000 0 0 Deletion 23999 LOC_Os04g53390 MrBTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH-related domain, expressed FN3028-S Chr4 31787001 31811000 0 0 Deletion 23999 LOC_Os04g53400 MBTB6 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3028-S Chr4 33978001 34035000 0 0 Deletion 56999 LOC_Os04g57010 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed FN3028-S Chr4 33978001 34035000 0 0 Deletion 56999 LOC_Os04g57020 expressed protein FN3028-S Chr4 33978001 34035000 0 0 Deletion 56999 LOC_Os04g57030 VQ domain containing protein, putative, expressed FN3028-S Chr4 33978001 34035000 0 0 Deletion 56999 LOC_Os04g57040 expressed protein FN3028-S Chr4 33978001 34035000 0 0 Deletion 56999 LOC_Os04g57050 jasmonate O-methyltransferase, putative, expressed FN3028-S Chr4 33978001 34035000 0 0 Deletion 56999 LOC_Os04g57060 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 33978001 34035000 0 0 Deletion 56999 LOC_Os04g57070 jasmonate O-methyltransferase, putative, expressed FN3028-S Chr4 33978001 34035000 0 0 Deletion 56999 LOC_Os04g57080 jasmonate O-methyltransferase, putative, expressed FN3028-S Chr4 33978001 34035000 0 0 Deletion 56999 LOC_Os04g57090 jasmonate O-methyltransferase, putative, expressed FN3028-S Chr4 33978001 34035000 0 0 Deletion 56999 LOC_Os04g57100 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 33978001 34035000 0 0 Deletion 56999 LOC_Os04g57110 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 33978001 34035000 0 0 Deletion 56999 LOC_Os04g57880 heat shock protein DnaJ, putative, expressed FN3028-S Chr4 34471001 34496000 0 0 Deletion 24999 LOC_Os04g57890 oligosaccharyl transferase, putative, expressed FN3028-S Chr4 34471001 34496000 0 0 Deletion 24999 LOC_Os04g58130 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed FN3028-S Chr4 34619001 34633000 0 0 Deletion 13999 LOC_Os04g58140 elongation factor Tu, putative, expressed FN3028-S Chr4 34619001 34633000 0 0 Deletion 13999 LOC_Os04g58150 transposon protein, putative, unclassified, expressed FN3028-S Chr4 34619001 34633000 0 0 Deletion 13999 LOC_Os04g58430 retrotransposon protein, putative, unclassified FN3028-S Chr4 3473001 3483000 0 0 Deletion 9999 LOC_Os04g06610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 3473001 3483000 0 0 Deletion 9999 LOC_Os04g08470 OsFBX116 - F-box domain containing protein, expressed FN3028-S Chr4 4560001 4610000 0 0 Deletion 49999 LOC_Os04g08480 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 4560001 4610000 0 0 Deletion 49999 LOC_Os04g08500 conserved hypothetical protein FN3028-S Chr4 4560001 4610000 0 0 Deletion 49999 LOC_Os04g08510 OsFBX117 - F-box domain containing protein, expressed FN3028-S Chr4 4560001 4610000 0 0 Deletion 49999 LOC_Os04g08520 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr4 4560001 4610000 0 0 Deletion 49999 LOC_Os04g09330 expressed protein FN3028-S Chr4 4960001 5070000 0 0 Deletion 109999 LOC_Os04g09340 hypothetical protein FN3028-S Chr4 4960001 5070000 0 0 Deletion 109999 LOC_Os04g09350 expressed protein FN3028-S Chr4 4960001 5070000 0 0 Deletion 109999 LOC_Os04g09360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 4960001 5070000 0 0 Deletion 109999 LOC_Os04g09370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 4960001 5070000 0 0 Deletion 109999 LOC_Os04g09380 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr4 4960001 5070000 0 0 Deletion 109999 LOC_Os04g09390 HEV3 - Hevein family protein precursor, expressed FN3028-S Chr4 4960001 5070000 0 0 Deletion 109999 LOC_Os04g09410 transposon protein, putative, unclassified, expressed FN3028-S Chr4 4960001 5070000 0 0 Deletion 109999 LOC_Os04g09420 hypothetical protein FN3028-S Chr4 4960001 5070000 0 0 Deletion 109999 LOC_Os04g09430 cytochrome P450, putative, expressed FN3028-S Chr4 4960001 5070000 0 0 Deletion 109999 LOC_Os04g09450 expressed protein FN3028-S Chr4 4960001 5070000 0 0 Deletion 109999 LOC_Os04g09460 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 5496001 5511000 0 0 Deletion 14999 LOC_Os04g10180 expressed protein FN3028-S Chr4 5496001 5511000 0 0 Deletion 14999 LOC_Os04g10190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 5496001 5511000 0 0 Deletion 14999 LOC_Os04g10680 zinc finger, C3HC4 type domain containing protein, expressed FN3028-S Chr4 5803001 5857000 0 0 Deletion 53999 LOC_Os04g10690 inorganic phosphate transporter, putative, expressed FN3028-S Chr4 5803001 5857000 0 0 Deletion 53999 LOC_Os04g10700 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 5803001 5857000 0 0 Deletion 53999 LOC_Os04g10720 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 5803001 5857000 0 0 Deletion 53999 LOC_Os04g10724 retrotransposon protein, putative, unclassified FN3028-S Chr4 5803001 5857000 0 0 Deletion 53999 LOC_Os04g10730 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 5803001 5857000 0 0 Deletion 53999 LOC_Os04g10740 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 5803001 5857000 0 0 Deletion 53999 LOC_Os04g10750 inorganic phosphate transporter, putative, expressed FN3028-S Chr4 5803001 5857000 0 0 Deletion 53999 LOC_Os04g10760 expressed protein FN3028-S Chr4 5803001 5857000 0 0 Deletion 53999 LOC_Os04g10770 expressed protein FN3028-S Chr4 6199001 6214000 0 0 Deletion 14999 LOC_Os04g11390 expressed protein FN3028-S Chr4 6224001 6248000 0 0 Deletion 23999 LOC_Os04g11400 expressed protein FN3028-S Chr4 6224001 6248000 0 0 Deletion 23999 LOC_Os04g11410 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr4 6224001 6248000 0 0 Deletion 23999 LOC_Os04g11420 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr4 6224001 6248000 0 0 Deletion 23999 LOC_Os04g11910 transposon protein, putative, unclassified, expressed FN3028-S Chr4 6621001 6640000 0 0 Deletion 18999 LOC_Os04g12060 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 6621001 6640000 0 0 Deletion 18999 LOC_Os04g12070 expressed protein FN3028-S Chr4 6621001 6640000 0 0 Deletion 18999 LOC_Os04g12080 TKL_IRAK_DUF26-lc.7 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3028-S Chr4 6621001 6640000 0 0 Deletion 18999 LOC_Os04g12669 expressed protein FN3028-S Chr4 7018001 7045000 0 0 Deletion 26999 LOC_Os04g12690 N-hydroxythioamide S-beta-glucosyltransferase, putative, expressed FN3028-S Chr4 7018001 7045000 0 0 Deletion 26999 LOC_Os04g12700 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 7018001 7045000 0 0 Deletion 26999 LOC_Os04g12710 indole-3-acetate beta-glucosyltransferase, putative, expressed FN3028-S Chr4 7018001 7045000 0 0 Deletion 26999 LOC_Os04g12720 indole-3-acetate beta-glucosyltransferase, putative, expressed FN3028-S Chr4 7018001 7045000 0 0 Deletion 26999 LOC_Os04g12730 expressed protein FN3028-S Chr4 7018001 7045000 0 0 Deletion 26999 LOC_Os04g12744 expressed protein FN3028-S Chr4 7018001 7045000 0 0 Deletion 26999 LOC_Os04g14170 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 7929001 7937000 0 0 Deletion 7999 LOC_Os04g14220 disease resistance protein RPM1, putative, expressed FN3028-S Chr4 7975001 8010000 0 0 Deletion 34999 LOC_Os04g14240 expressed protein FN3028-S Chr4 7975001 8010000 0 0 Deletion 34999 LOC_Os04g14250 expressed protein FN3028-S Chr4 7975001 8010000 0 0 Deletion 34999 LOC_Os04g14260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 7975001 8010000 0 0 Deletion 34999 LOC_Os04g14270 latency associated nuclear antigen, putative, expressed FN3028-S Chr4 7975001 8010000 0 0 Deletion 34999 LOC_Os04g14280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 7975001 8010000 0 0 Deletion 34999 LOC_Os04g14290 hypothetical protein FN3028-S Chr4 7975001 8010000 0 0 Deletion 34999 LOC_Os04g14304 OsWAK30/31 - OsWAK receptor-like protein OsWAK-RLP, expressed FN3028-S Chr4 7975001 8010000 0 0 Deletion 34999 LOC_Os04g14550 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr4 8144001 8167000 0 0 Deletion 22999 LOC_Os04g14560 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 8144001 8167000 0 0 Deletion 22999 LOC_Os04g14570 expressed protein FN3028-S Chr4 8328001 8382000 0 0 Deletion 53999 LOC_Os04g14850 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 8328001 8382000 0 0 Deletion 53999 LOC_Os04g14860 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 8328001 8382000 0 0 Deletion 53999 LOC_Os04g14870 retrotransposon protein, putative, unclassified FN3028-S Chr4 8328001 8382000 0 0 Deletion 53999 LOC_Os04g14880 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 8328001 8382000 0 0 Deletion 53999 LOC_Os04g14890 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 8328001 8382000 0 0 Deletion 53999 LOC_Os04g15650 Leucine Rich Repeat family protein, expressed FN3028-S Chr4 8509001 8533000 0 0 Deletion 23999 LOC_Os04g15660 receptor kinase, putative, expressed FN3028-S Chr4 8509001 8533000 0 0 Deletion 23999 LOC_Os04g15670 expressed protein FN3028-S Chr4 8509001 8533000 0 0 Deletion 23999 LOC_Os04g15680 expressed protein FN3028-S Chr4 8509001 8533000 0 0 Deletion 23999 LOC_Os04g15690 DSBA-like thioredoxin domain containing protein, expressed FN3028-S Chr4 8509001 8533000 0 0 Deletion 23999 LOC_Os04g15790 eukaryotic aspartyl protease domain containing protein, expressed FN3028-S Chr4 8584001 8607000 0 0 Deletion 22999 LOC_Os04g15800 expressed protein FN3028-S Chr4 8584001 8607000 0 0 Deletion 22999 LOC_Os04g15820 expressed protein FN3028-S Chr4 8584001 8607000 0 0 Deletion 22999 LOC_Os04g15840 expansin precursor, putative, expressed FN3028-S Chr4 8584001 8607000 0 0 Deletion 22999 LOC_Os04g15850 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr4 8584001 8607000 0 0 Deletion 22999 LOC_Os04g16150 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 8773001 8808000 0 0 Deletion 34999 LOC_Os04g16160 expressed protein FN3028-S Chr4 8773001 8808000 0 0 Deletion 34999 LOC_Os04g16170 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 8773001 8808000 0 0 Deletion 34999 LOC_Os04g16180 retrotransposon protein, putative, unclassified FN3028-S Chr4 8773001 8808000 0 0 Deletion 34999 LOC_Os04g16190 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 8773001 8808000 0 0 Deletion 34999 LOC_Os04g16200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 8773001 8808000 0 0 Deletion 34999 LOC_Os04g16220 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr4 8886001 8907000 0 0 Deletion 20999 LOC_Os04g16360 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr4 8886001 8907000 0 0 Deletion 20999 LOC_Os04g16370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 8886001 8907000 0 0 Deletion 20999 LOC_Os04g16380 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 8886001 8907000 0 0 Deletion 20999 LOC_Os04g16390 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 8886001 8907000 0 0 Deletion 20999 LOC_Os04g16660 retrotransposon protein, putative, unclassified FN3028-S Chr4 9064001 9083000 0 0 Deletion 18999 LOC_Os04g16670 expressed protein FN3028-S Chr4 9064001 9083000 0 0 Deletion 18999 LOC_Os04g16680 fructose-1,6-bisphosphatase, putative, expressed FN3028-S Chr4 9064001 9083000 0 0 Deletion 18999 LOC_Os04g16690 expressed protein FN3028-S Chr4 9064001 9083000 0 0 Deletion 18999 LOC_Os04g17320 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 9490001 9520000 0 0 Deletion 29999 LOC_Os04g17330 hypothetical protein FN3028-S Chr4 9490001 9520000 0 0 Deletion 29999 LOC_Os04g17340 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr4 9490001 9520000 0 0 Deletion 29999 LOC_Os04g17350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr4 9490001 9520000 0 0 Deletion 29999 LOC_Os04g17360 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr4 9490001 9520000 0 0 Deletion 29999 LOC_Os04g17370 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr4 9490001 9520000 0 0 Deletion 29999 LOC_Os04g17380 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr4 9490001 9520000 0 0 Deletion 29999 LOC_Os04g17390 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr4 9490001 9520000 0 0 Deletion 29999 LOC_Os04g17400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr5 10235001 10281000 0 0 Deletion 45999 LOC_Os05g17820 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr5 10235001 10281000 0 0 Deletion 45999 LOC_Os05g17830 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 10235001 10281000 0 0 Deletion 45999 LOC_Os05g17840 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr5 10235001 10281000 0 0 Deletion 45999 LOC_Os05g17849 expressed protein FN3028-S Chr5 10235001 10281000 0 0 Deletion 45999 LOC_Os05g17860 retrotransposon protein, putative, unclassified FN3028-S Chr5 10235001 10281000 0 0 Deletion 45999 LOC_Os05g17870 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 10235001 10281000 0 0 Deletion 45999 LOC_Os05g17880 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 10235001 10281000 0 0 Deletion 45999 LOC_Os05g18400 retrotransposon protein, putative, unclassified FN3028-S Chr5 10972001 11025000 0 0 Deletion 52999 LOC_Os05g18910 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 10972001 11025000 0 0 Deletion 52999 LOC_Os05g18920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr5 10972001 11025000 0 0 Deletion 52999 LOC_Os05g18930 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr5 10972001 11025000 0 0 Deletion 52999 LOC_Os05g18940 STIGL3 - Stigma-specific Stig1 family protein precursor, putative, expressed FN3028-S Chr5 10972001 11025000 0 0 Deletion 52999 LOC_Os05g18950 pentatricopeptide, putative, expressed FN3028-S Chr5 10972001 11025000 0 0 Deletion 52999 LOC_Os05g18960 expressed protein FN3028-S Chr5 10972001 11025000 0 0 Deletion 52999 LOC_Os05g18970 expressed protein FN3028-S Chr5 10972001 11025000 0 0 Deletion 52999 LOC_Os05g18980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr5 10972001 11025000 0 0 Deletion 52999 LOC_Os05g18990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr5 10972001 11025000 0 0 Deletion 52999 LOC_Os05g19580 expressed protein FN3028-S Chr5 11396001 11421000 0 0 Deletion 24999 LOC_Os05g19590 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 11396001 11421000 0 0 Deletion 24999 LOC_Os05g19600 expansin precursor, putative, expressed FN3028-S Chr5 11396001 11421000 0 0 Deletion 24999 LOC_Os05g19954 tRNA pseudouridine synthase family protein, putative, expressed FN3028-S Chr5 11642001 11654000 0 0 Deletion 11999 LOC_Os05g20150 TKL_IRAK_CrRLK1L-1.11 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed FN3028-S Chr5 11908001 12010000 0 0 Deletion 101999 LOC_Os05g20320 expressed protein FN3028-S Chr5 11908001 12010000 0 0 Deletion 101999 LOC_Os05g20330 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 11908001 12010000 0 0 Deletion 101999 LOC_Os05g20340 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 11908001 12010000 0 0 Deletion 101999 LOC_Os05g20350 expressed protein FN3028-S Chr5 11908001 12010000 0 0 Deletion 101999 LOC_Os05g20360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr5 11908001 12010000 0 0 Deletion 101999 LOC_Os05g20370 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 11908001 12010000 0 0 Deletion 101999 LOC_Os05g20380 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 11908001 12010000 0 0 Deletion 101999 LOC_Os05g20390 transposon protein, putative, unclassified, expressed FN3028-S Chr5 11908001 12010000 0 0 Deletion 101999 LOC_Os05g20400 transposon protein, putative, unclassified, expressed FN3028-S Chr5 11908001 12010000 0 0 Deletion 101999 LOC_Os05g20410 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr5 11908001 12010000 0 0 Deletion 101999 LOC_Os05g20420 expressed protein FN3028-S Chr5 11908001 12010000 0 0 Deletion 101999 LOC_Os05g20430 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 11908001 12010000 0 0 Deletion 101999 LOC_Os05g20440 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 11908001 12010000 0 0 Deletion 101999 LOC_Os05g20450 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 11908001 12010000 0 0 Deletion 101999 LOC_Os05g20460 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 12222001 12245000 0 0 Deletion 22999 LOC_Os05g20840 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr5 12222001 12245000 0 0 Deletion 22999 LOC_Os05g20850 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 12222001 12245000 0 0 Deletion 22999 LOC_Os05g22314 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 12828001 12843000 0 0 Deletion 14999 LOC_Os05g22614 PTAC16, putative, expressed FN3028-S Chr5 12828001 12843000 0 0 Deletion 14999 LOC_Os05g22920 digestive organ expansion factor, putative, expressed FN3028-S Chr5 13038001 13073000 0 0 Deletion 34999 LOC_Os05g22920 digestive organ expansion factor, putative, expressed FN3028-S Chr5 13038001 13073000 0 0 Deletion 34999 LOC_Os05g22930 CAAX amino terminal protease family protein, putative, expressed FN3028-S Chr5 13038001 13073000 0 0 Deletion 34999 LOC_Os05g22940 acetyl-CoA carboxylase, putative, expressed FN3028-S Chr5 13437001 13459000 0 0 Deletion 21999 LOC_Os05g23500 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 13437001 13459000 0 0 Deletion 21999 LOC_Os05g23670 transcription factor jumonji, putative, expressed FN3028-S Chr5 13579001 13595000 0 0 Deletion 15999 LOC_Os05g23680 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 13579001 13595000 0 0 Deletion 15999 LOC_Os05g23810 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 13678001 13716000 0 0 Deletion 37999 LOC_Os05g23820 retrotransposon, putative, centromere-specific FN3028-S Chr5 13678001 13716000 0 0 Deletion 37999 LOC_Os05g23830 endo-1,4-beta-xylanase, putative, expressed FN3028-S Chr5 13678001 13716000 0 0 Deletion 37999 LOC_Os05g23840 expressed protein FN3028-S Chr5 13678001 13716000 0 0 Deletion 37999 LOC_Os05g23850 expressed protein FN3028-S Chr5 13678001 13716000 0 0 Deletion 37999 LOC_Os05g23860 rab GDP dissociation inhibitor alpha, putative, expressed FN3028-S Chr5 13678001 13716000 0 0 Deletion 37999 LOC_Os05g23880 lipoxygenase, putative, expressed FN3028-S Chr5 13737001 13763000 0 0 Deletion 25999 LOC_Os05g23890 retrotransposon protein, putative, LINE subclass, expressed FN3028-S Chr5 13737001 13763000 0 0 Deletion 25999 LOC_Os05g23900 expressed protein FN3028-S Chr5 13737001 13763000 0 0 Deletion 25999 LOC_Os05g23910 histone-like transcription factor and archaeal histone, putative, expressed FN3028-S Chr5 13737001 13763000 0 0 Deletion 25999 LOC_Os05g23924 glycosyl hydrolase family 10 protein, putative, expressed FN3028-S Chr5 13788001 13804000 0 0 Deletion 15999 LOC_Os05g23970 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 13788001 13804000 0 0 Deletion 15999 LOC_Os05g24190 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr5 13967001 13986000 0 0 Deletion 18999 LOC_Os05g24410 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 14101001 14118000 0 0 Deletion 16999 LOC_Os05g24420 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr5 14101001 14118000 0 0 Deletion 16999 LOC_Os05g24430 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr5 14101001 14118000 0 0 Deletion 16999 LOC_Os05g24440 retrotransposon protein, putative, unclassified FN3028-S Chr5 14101001 14118000 0 0 Deletion 16999 LOC_Os05g24450 hypothetical protein FN3028-S Chr5 14101001 14118000 0 0 Deletion 16999 LOC_Os05g24840 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 14395001 14408000 0 0 Deletion 12999 LOC_Os05g24850 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr5 14395001 14408000 0 0 Deletion 12999 LOC_Os05g24860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr5 14395001 14408000 0 0 Deletion 12999 LOC_Os05g24870 expressed protein FN3028-S Chr5 14395001 14408000 0 0 Deletion 12999 LOC_Os05g24880 dehydrogenase, putative, expressed FN3028-S Chr5 14395001 14408000 0 0 Deletion 12999 LOC_Os05g24930 PPR repeat containing protein, expressed FN3028-S Chr5 14432001 14445000 0 0 Deletion 12999 LOC_Os05g24940 expressed protein FN3028-S Chr5 14432001 14445000 0 0 Deletion 12999 LOC_Os05g24950 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 14432001 14445000 0 0 Deletion 12999 LOC_Os05g24960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr5 14432001 14445000 0 0 Deletion 12999 LOC_Os05g25040 expressed protein FN3028-S Chr5 14490001 14520000 0 0 Deletion 29999 LOC_Os05g25030 expressed protein FN3028-S Chr5 14490001 14520000 0 0 Deletion 29999 LOC_Os05g25050 expressed protein FN3028-S Chr5 14490001 14520000 0 0 Deletion 29999 LOC_Os05g25060 PPR repeat domain containing protein, putative, expressed FN3028-S Chr5 14490001 14520000 0 0 Deletion 29999 LOC_Os05g25070 expressed protein FN3028-S Chr5 14490001 14520000 0 0 Deletion 29999 LOC_Os05g25075 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 14490001 14520000 0 0 Deletion 29999 LOC_Os05g25380 retrotransposon, putative, centromere-specific FN3028-S Chr5 14743001 14771000 0 0 Deletion 27999 LOC_Os05g25390 tyrosine protein kinase domain containing protein, putative, expressed FN3028-S Chr5 14743001 14771000 0 0 Deletion 27999 LOC_Os05g25400 RNA binding protein, putative, expressed FN3028-S Chr5 14743001 14771000 0 0 Deletion 27999 LOC_Os05g25560 glycosyl hydrolase family 10 protein, putative, expressed FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g25860 expressed protein FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g25870 N-dimethylguanosine tRNA methyltransferase, putative, expressed FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g25880 N-dimethylguanosine tRNA methyltransferase, putative, expressed FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g25890 expressed protein FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g25900 expressed protein FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g25910 DUF623 domain containing protein, expressed FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g25914 expressed protein FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g25920 expressed protein FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g25930 expressed protein FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g25940 expressed protein FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g25950 cyclin, putative, expressed FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g25960 no apical meristem protein, expressed FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g25974 expressed protein FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g25990 expressed protein FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g26000 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g26010 transposon protein, putative, unclassified, expressed FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g26020 cyclin, putative, expressed FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g26026 expressed protein FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g26032 expressed protein FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g26040 pumilio-family RNA binding repeat containing protein, expressed FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g26049 expressed protein FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g26060 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g26070 cyclin, putative, expressed FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g26080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g26090 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g26100 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g26110 transposon protein, putative, Mutator sub-class, expressed FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g26120 expressed protein FN3028-S Chr5 15048001 15194000 0 0 Deletion 145999 LOC_Os05g26340 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr5 15320001 15355000 0 0 Deletion 34999 LOC_Os05g26350 PROLM4 - Prolamin precursor, expressed FN3028-S Chr5 15320001 15355000 0 0 Deletion 34999 LOC_Os05g26368 prolamin precursor, putative, expressed FN3028-S Chr5 15320001 15355000 0 0 Deletion 34999 LOC_Os05g26377 PROLM9 - Prolamin precursor, expressed FN3028-S Chr5 15320001 15355000 0 0 Deletion 34999 LOC_Os05g26386 prolamin precursor, putative, expressed FN3028-S Chr5 15320001 15355000 0 0 Deletion 34999 LOC_Os05g26410 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr5 15320001 15355000 0 0 Deletion 34999 LOC_Os05g26710 retrotransposon protein, putative, unclassified FN3028-S Chr5 15349462 15349462 0 0 Insertion 1 downstream_gene_variant HET FN3028-S Chr5 15515001 15537000 0 0 Deletion 21999 LOC_Os05g26740 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 15515001 15537000 0 0 Deletion 21999 LOC_Os05g26750 PROLM17 - Prolamin precursor, expressed FN3028-S Chr5 15515001 15537000 0 0 Deletion 21999 LOC_Os05g26760 expressed protein FN3028-S Chr5 15515001 15537000 0 0 Deletion 21999 LOC_Os05g26770 PROLM18 - Prolamin precursor, expressed FN3028-S Chr5 15515001 15537000 0 0 Deletion 21999 LOC_Os05g26780 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 15646001 15663000 0 0 Deletion 16999 LOC_Os05g27120 DUF640 domain containing protein, putative, expressed FN3028-S Chr5 15779001 15795000 0 0 Deletion 15999 LOC_Os05g27130 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr5 15779001 15795000 0 0 Deletion 15999 LOC_Os05g27140 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr5 15834001 15854000 0 0 Deletion 19999 LOC_Os05g27240 expressed protein FN3028-S Chr5 15834001 15854000 0 0 Deletion 19999 LOC_Os05g27250 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 15834001 15854000 0 0 Deletion 19999 LOC_Os05g27260 retrotransposon protein, putative, unclassified FN3028-S Chr5 15834001 15854000 0 0 Deletion 19999 LOC_Os05g27270 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 15834001 15854000 0 0 Deletion 19999 LOC_Os05g27350 expressed protein FN3028-S Chr5 15895001 15906000 0 0 Deletion 10999 LOC_Os05g28200 prenyltransferase, putative, expressed FN3028-S Chr5 16516001 16537000 0 0 Deletion 20999 LOC_Os05g28210 small hydrophilic plant seed protein, putative, expressed FN3028-S Chr5 16516001 16537000 0 0 Deletion 20999 LOC_Os05g28220 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 16516001 16537000 0 0 Deletion 20999 LOC_Os05g28540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr5 16721001 16774000 0 0 Deletion 52999 LOC_Os05g28550 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr5 16721001 16774000 0 0 Deletion 52999 LOC_Os05g28560 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 16721001 16774000 0 0 Deletion 52999 LOC_Os05g28570 expressed protein FN3028-S Chr5 16721001 16774000 0 0 Deletion 52999 LOC_Os05g28580 hypothetical protein FN3028-S Chr5 16721001 16774000 0 0 Deletion 52999 LOC_Os05g28590 expressed protein FN3028-S Chr5 16721001 16774000 0 0 Deletion 52999 LOC_Os05g28600 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr5 16721001 16774000 0 0 Deletion 52999 LOC_Os05g28610 hypothetical protein FN3028-S Chr5 16721001 16774000 0 0 Deletion 52999 LOC_Os05g30080 retrotransposon protein, putative, unclassified FN3028-S Chr5 16896090 16896093 0 0 Deletion 3 INTERGENIC HOMO FN3028-S Chr5 17404001 17432000 0 0 Deletion 27999 LOC_Os05g30090 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 17404001 17432000 0 0 Deletion 27999 LOC_Os05g30100 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 17404001 17432000 0 0 Deletion 27999 LOC_Os05g30110 retrotransposon protein, putative, unclassified FN3028-S Chr5 18342001 18364000 0 0 Deletion 21999 LOC_Os05g31540 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 18342001 18364000 0 0 Deletion 21999 LOC_Os05g31550 disease resistance protein RGA4, putative, expressed FN3028-S Chr5 18342001 18364000 0 0 Deletion 21999 LOC_Os05g31560 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr5 18342001 18364000 0 0 Deletion 21999 LOC_Os05g31930 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 18600001 18650000 0 0 Deletion 49999 LOC_Os05g31940 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 18600001 18650000 0 0 Deletion 49999 LOC_Os05g31950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr5 18600001 18650000 0 0 Deletion 49999 LOC_Os05g31970 expressed protein FN3028-S Chr5 18600001 18650000 0 0 Deletion 49999 LOC_Os05g32030 transposon protein, putative, unclassified, expressed FN3028-S Chr5 18663001 18687000 0 0 Deletion 23999 LOC_Os05g32040 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 18663001 18687000 0 0 Deletion 23999 LOC_Os05g32050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr5 18663001 18687000 0 0 Deletion 23999 LOC_Os05g32060 expressed protein FN3028-S Chr5 19543001 19574000 0 0 Deletion 30999 LOC_Os05g33330 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr5 19543001 19574000 0 0 Deletion 30999 LOC_Os05g33340 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr5 19776001 19806000 0 0 Deletion 29999 LOC_Os05g33620 expressed protein FN3028-S Chr5 19776001 19806000 0 0 Deletion 29999 LOC_Os05g33630 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed FN3028-S Chr5 19776001 19806000 0 0 Deletion 29999 LOC_Os05g33644 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed FN3028-S Chr5 19776001 19806000 0 0 Deletion 29999 LOC_Os05g34460 OsDegp7 - Putative Deg protease homologue, expressed FN3028-S Chr5 2035001 2051000 0 0 Deletion 15999 LOC_Os05g04430 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 2035001 2051000 0 0 Deletion 15999 LOC_Os05g04440 peroxidase precursor, putative, expressed FN3028-S Chr5 2035001 2051000 0 0 Deletion 15999 LOC_Os05g04450 peroxidase precursor, putative, expressed FN3028-S Chr5 2035001 2051000 0 0 Deletion 15999 LOC_Os05g06140 lipase, putative, expressed FN3028-S Chr5 20877001 20896000 0 0 Deletion 18999 LOC_Os05g35160 clathrin assembly protein, putative, expressed FN3028-S Chr5 20877001 20896000 0 0 Deletion 18999 LOC_Os05g35170 no apical meristem protein, putative, expressed FN3028-S Chr5 20877001 20896000 0 0 Deletion 18999 LOC_Os05g35180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr5 20877001 20896000 0 0 Deletion 18999 LOC_Os05g35190 powdery mildew resistant protein 5, putative, expressed FN3028-S Chr5 20877001 20896000 0 0 Deletion 18999 LOC_Os05g37310 expressed protein FN3028-S Chr5 21828001 21904000 0 0 Deletion 75999 LOC_Os05g37320 transposon protein, putative, unclassified, expressed FN3028-S Chr5 21828001 21904000 0 0 Deletion 75999 LOC_Os05g37330 60S acidic ribosomal protein, putative, expressed FN3028-S Chr5 21828001 21904000 0 0 Deletion 75999 LOC_Os05g37340 expressed protein FN3028-S Chr5 21828001 21904000 0 0 Deletion 75999 LOC_Os05g37350 hhH-GPD superfamily base excision DNA repair protein, expressed FN3028-S Chr5 21828001 21904000 0 0 Deletion 75999 LOC_Os05g37360 hypothetical protein FN3028-S Chr5 21828001 21904000 0 0 Deletion 75999 LOC_Os05g37370 retrotransposon protein, putative, unclassified FN3028-S Chr5 21828001 21904000 0 0 Deletion 75999 LOC_Os05g37380 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 21828001 21904000 0 0 Deletion 75999 LOC_Os05g37390 G10 protein, putative, expressed FN3028-S Chr5 21828001 21904000 0 0 Deletion 75999 LOC_Os05g37400 expressed protein FN3028-S Chr5 21828001 21904000 0 0 Deletion 75999 LOC_Os05g37410 hhH-GPD superfamily base excision DNA repair protein, expressed FN3028-S Chr5 21828001 21904000 0 0 Deletion 75999 LOC_Os05g37420 expressed protein FN3028-S Chr5 21828001 21904000 0 0 Deletion 75999 LOC_Os05g37434 arginyl-tRNA--protein transferase 1, putative, expressed FN3028-S Chr5 21828001 21904000 0 0 Deletion 75999 LOC_Os05g38170 phosphoribosyl transferase, putative, expressed FN3028-S Chr5 22389001 22417000 0 0 Deletion 27999 LOC_Os05g38180 Yip1 domain containing protein, expressed FN3028-S Chr5 22389001 22417000 0 0 Deletion 27999 LOC_Os05g38190 pentatricopeptide, putative, expressed FN3028-S Chr5 22389001 22417000 0 0 Deletion 27999 LOC_Os05g38210 mitochondrial glycoprotein, putative, expressed FN3028-S Chr5 22389001 22417000 0 0 Deletion 27999 LOC_Os05g38219 expressed protein FN3028-S Chr5 22389001 22417000 0 0 Deletion 27999 LOC_Os05g38230 oxidoreductase, aldo/keto reductase family protein, putative, expressed FN3028-S Chr5 22389001 22417000 0 0 Deletion 27999 LOC_Os05g38240 transposon protein, putative, unclassified, expressed FN3028-S Chr5 22389001 22417000 0 0 Deletion 27999 LOC_Os05g39100 hypothetical protein FN3028-S Chr5 22927001 22950000 0 0 Deletion 22999 LOC_Os05g39110 selT-like protein precursor, putative, expressed FN3028-S Chr5 22927001 22950000 0 0 Deletion 22999 LOC_Os05g39120 expressed protein FN3028-S Chr5 22927001 22950000 0 0 Deletion 22999 LOC_Os05g39130 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 22927001 22950000 0 0 Deletion 22999 LOC_Os05g40080 WRKY54, expressed FN3028-S Chr5 23541001 23584000 0 0 Deletion 42999 LOC_Os05g40090 transposon protein, putative, unclassified, expressed FN3028-S Chr5 23541001 23584000 0 0 Deletion 42999 LOC_Os05g40100 retrotransposon protein, putative, unclassified FN3028-S Chr5 23541001 23584000 0 0 Deletion 42999 LOC_Os05g40110 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 23541001 23584000 0 0 Deletion 42999 LOC_Os05g40120 expressed protein FN3028-S Chr5 23541001 23584000 0 0 Deletion 42999 LOC_Os05g40130 expressed protein FN3028-S Chr5 23541001 23584000 0 0 Deletion 42999 LOC_Os05g40140 retrotransposon protein, putative, unclassified FN3028-S Chr5 23541001 23584000 0 0 Deletion 42999 LOC_Os05g40150 RGH2B, putative, expressed FN3028-S Chr5 23541001 23584000 0 0 Deletion 42999 LOC_Os05g40330 auxin efflux carrier component, putative, expressed FN3028-S Chr5 23698001 23719000 0 0 Deletion 20999 LOC_Os05g40340 expressed protein FN3028-S Chr5 23698001 23719000 0 0 Deletion 20999 LOC_Os05g40350 expressed protein FN3028-S Chr5 23698001 23719000 0 0 Deletion 20999 LOC_Os05g40360 expressed protein FN3028-S Chr5 24502001 24521000 0 0 Deletion 18999 LOC_Os05g41850 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr5 24502001 24521000 0 0 Deletion 18999 LOC_Os05g41860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr5 24502001 24521000 0 0 Deletion 18999 LOC_Os05g41870 glycine-rich cell wall protein, putative, expressed FN3028-S Chr5 24502001 24521000 0 0 Deletion 18999 LOC_Os05g43300 expressed protein FN3028-S Chr5 25190001 25218000 0 0 Deletion 27999 LOC_Os05g43310 photosystem II reaction center W protein, chloroplast precursor, putative, expressed FN3028-S Chr5 25190001 25218000 0 0 Deletion 27999 LOC_Os05g43330 expressed protein FN3028-S Chr5 25190001 25218000 0 0 Deletion 27999 LOC_Os05g43340 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 25190001 25218000 0 0 Deletion 27999 LOC_Os05g43350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr5 25190001 25218000 0 0 Deletion 27999 LOC_Os05g43360 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed FN3028-S Chr5 26024001 26046000 0 0 Deletion 21999 LOC_Os05g44780 expressed protein FN3028-S Chr5 26024001 26046000 0 0 Deletion 21999 LOC_Os05g44786 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 26024001 26046000 0 0 Deletion 21999 LOC_Os05g44792 expressed protein FN3028-S Chr5 26024001 26046000 0 0 Deletion 21999 LOC_Os05g44916 mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed FN3028-S Chr5 26101001 26146000 0 0 Deletion 44999 LOC_Os05g44916 mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed FN3028-S Chr5 26101001 26146000 0 0 Deletion 44999 LOC_Os05g44922 6-phosphofructokinase, putative, expressed FN3028-S Chr5 26101001 26146000 0 0 Deletion 44999 LOC_Os05g44930 receptor-like protein kinase, putative, expressed FN3028-S Chr5 26101001 26146000 0 0 Deletion 44999 LOC_Os05g44940 protein kinase domain containing protein, expressed FN3028-S Chr5 26101001 26146000 0 0 Deletion 44999 LOC_Os05g44950 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN3028-S Chr5 26101001 26146000 0 0 Deletion 44999 LOC_Os05g44960 expressed protein FN3028-S Chr5 26101001 26146000 0 0 Deletion 44999 LOC_Os05g44970 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN3028-S Chr5 26477001 26500000 0 0 Deletion 22999 LOC_Os05g45710 serine acetyltransferase protein, putative, expressed FN3028-S Chr5 26477001 26500000 0 0 Deletion 22999 LOC_Os05g45720 starch synthase, putative, expressed FN3028-S Chr5 26477001 26500000 0 0 Deletion 22999 LOC_Os05g45730 ubiquinone oxidoreductase, putative, expressed FN3028-S Chr5 26477001 26500000 0 0 Deletion 22999 LOC_Os05g45740 mitochondrial ATP synthase g subunit family protein, putative, expressed FN3028-S Chr5 26477001 26500000 0 0 Deletion 22999 LOC_Os05g46260 exostosin, putative, expressed FN3028-S Chr5 26829001 26860000 0 0 Deletion 30999 LOC_Os05g46270 FEN1A - Putative flap endonuclease protein, expressed FN3028-S Chr5 26829001 26860000 0 0 Deletion 30999 LOC_Os05g46280 expressed protein FN3028-S Chr5 26829001 26860000 0 0 Deletion 30999 LOC_Os05g46290 T-complex protein, putative, expressed FN3028-S Chr5 26829001 26860000 0 0 Deletion 30999 LOC_Os05g46300 OsFBX172 - F-box domain containing protein, expressed FN3028-S Chr5 26829001 26860000 0 0 Deletion 30999 LOC_Os05g46310 expressed protein FN3028-S Chr5 26829001 26860000 0 0 Deletion 30999 LOC_Os05g46320 OsFBX173 - F-box domain containing protein, expressed FN3028-S Chr5 26829001 26860000 0 0 Deletion 30999 LOC_Os05g46330 MYB family transcription factor, putative, expressed FN3028-S Chr5 26829001 26860000 0 0 Deletion 30999 LOC_Os05g46340 expressed protein FN3028-S Chr5 26829001 26860000 0 0 Deletion 30999 LOC_Os05g48430 hypothetical protein FN3028-S Chr5 27772001 27804000 0 0 Deletion 31999 LOC_Os05g48440 FAD-binding domain-containing protein, putative, expressed FN3028-S Chr5 27772001 27804000 0 0 Deletion 31999 LOC_Os05g48450 aminotransferase domain containing protein, putative, expressed FN3028-S Chr5 27772001 27804000 0 0 Deletion 31999 LOC_Os05g48470 expressed protein FN3028-S Chr5 27772001 27804000 0 0 Deletion 31999 LOC_Os05g48480 FAD-binding domain-containing protein, putative, expressed FN3028-S Chr5 27772001 27804000 0 0 Deletion 31999 LOC_Os05g48489 expressed protein FN3028-S Chr5 27772001 27804000 0 0 Deletion 31999 LOC_Os05g48500 expressed protein FN3028-S Chr5 27772001 27804000 0 0 Deletion 31999 LOC_Os05g48510 phenylalanyl-tRNA synthetase beta chain, putative, expressed FN3028-S Chr5 27772001 27804000 0 0 Deletion 31999 LOC_Os05g49810 armadillo/beta-catenin-like repeat containing protein, expressed FN3028-S Chr5 28588001 28611000 0 0 Deletion 22999 LOC_Os05g49820 chloroplast unusual positioning protein, putative, expressed FN3028-S Chr5 28588001 28611000 0 0 Deletion 22999 LOC_Os05g49830 lipase class 3 family protein, putative, expressed FN3028-S Chr5 28588001 28611000 0 0 Deletion 22999 LOC_Os05g49840 phospholipase, putative, expressed FN3028-S Chr5 28588001 28611000 0 0 Deletion 22999 LOC_Os05g49850 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 28588001 28611000 0 0 Deletion 22999 LOC_Os05g49880 lactate/malate dehydrogenase, putative, expressed FN3028-S Chr5 28621001 28637000 0 0 Deletion 15999 LOC_Os05g49890 ras-related protein, putative, expressed FN3028-S Chr5 28621001 28637000 0 0 Deletion 15999 LOC_Os05g49900 3-ketoacyl-CoA synthase, putative, expressed FN3028-S Chr5 28621001 28637000 0 0 Deletion 15999 LOC_Os05g49910 expressed protein FN3028-S Chr5 28621001 28637000 0 0 Deletion 15999 LOC_Os05g49920 pentatricopeptide, putative, expressed FN3028-S Chr5 28621001 28637000 0 0 Deletion 15999 LOC_Os05g50610 WRKY8, expressed FN3028-S Chr5 29100001 29119000 0 0 Deletion 18999 LOC_Os05g50850 expressed protein FN3028-S Chr5 29164001 29196000 0 0 Deletion 31999 LOC_Os05g50860 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr5 29164001 29196000 0 0 Deletion 31999 LOC_Os05g50870 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr5 29164001 29196000 0 0 Deletion 31999 LOC_Os05g50880 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr5 29164001 29196000 0 0 Deletion 31999 LOC_Os06g01100 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr5 3069001 3106000 0 0 Deletion 36999 LOC_Os05g06150 vegetative storage protein, putative, expressed FN3028-S Chr5 3069001 3106000 0 0 Deletion 36999 LOC_Os05g06160 trehalose phosphatase, putative, expressed FN3028-S Chr5 3069001 3106000 0 0 Deletion 36999 LOC_Os05g06170 FAR1 family protein, expressed FN3028-S Chr5 3069001 3106000 0 0 Deletion 36999 LOC_Os05g06180 expressed protein FN3028-S Chr5 3069001 3106000 0 0 Deletion 36999 LOC_Os05g06190 expressed protein FN3028-S Chr5 3069001 3106000 0 0 Deletion 36999 LOC_Os05g06200 transposon protein, putative, unclassified, expressed FN3028-S Chr5 3109001 3163000 0 0 Deletion 53999 LOC_Os05g06210 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr5 3109001 3163000 0 0 Deletion 53999 LOC_Os05g06220 hypothetical protein FN3028-S Chr5 3109001 3163000 0 0 Deletion 53999 LOC_Os05g06230 expressed protein FN3028-S Chr5 3109001 3163000 0 0 Deletion 53999 LOC_Os05g06240 LRR receptor kinase, putative, expressed FN3028-S Chr5 3109001 3163000 0 0 Deletion 53999 LOC_Os05g06500 universal stress protein domain containing protein, putative, expressed FN3028-S Chr5 5152001 5176000 0 0 Deletion 23999 LOC_Os05g09230 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr5 5152001 5176000 0 0 Deletion 23999 LOC_Os05g09240 AGAP006957-PA, putative, expressed FN3028-S Chr5 5152001 5176000 0 0 Deletion 23999 LOC_Os05g09250 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 5152001 5176000 0 0 Deletion 23999 LOC_Os05g09260 retrotransposon protein, putative, unclassified FN3028-S Chr5 5152001 5176000 0 0 Deletion 23999 LOC_Os05g09270 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr5 5152001 5176000 0 0 Deletion 23999 LOC_Os05g09280 AGAP006957-PA, putative, expressed FN3028-S Chr5 5186937 5186937 0 0 Insertion 62 downstream_gene_variant HET FN3028-S Chr5 5188001 5209000 0 0 Deletion 20999 LOC_Os05g09290 expressed protein FN3028-S Chr5 5188001 5209000 0 0 Deletion 20999 LOC_Os05g09300 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr5 5188001 5209000 0 0 Deletion 20999 LOC_Os05g09310 expressed protein FN3028-S Chr5 5188001 5209000 0 0 Deletion 20999 LOC_Os05g09320 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr5 5188001 5209000 0 0 Deletion 20999 LOC_Os05g09330 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr5 5188001 5209000 0 0 Deletion 20999 LOC_Os05g10380 RWP-RK, putative, expressed FN3028-S Chr5 5658001 5697000 0 0 Deletion 38999 LOC_Os05g10390 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr5 5658001 5697000 0 0 Deletion 38999 LOC_Os05g10400 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr5 5658001 5697000 0 0 Deletion 38999 LOC_Os05g10414 expressed protein FN3028-S Chr5 5658001 5697000 0 0 Deletion 38999 LOC_Os05g10420 expressed protein FN3028-S Chr5 5658001 5697000 0 0 Deletion 38999 LOC_Os05g10430 hypothetical protein FN3028-S Chr5 5658001 5697000 0 0 Deletion 38999 LOC_Os05g10440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr5 5658001 5697000 0 0 Deletion 38999 LOC_Os05g10450 expressed protein FN3028-S Chr5 5658001 5697000 0 0 Deletion 38999 LOC_Os05g10460 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr5 5658001 5697000 0 0 Deletion 38999 LOC_Os05g10470 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr5 5658001 5697000 0 0 Deletion 38999 LOC_Os05g10660 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr5 5826001 5841000 0 0 Deletion 14999 LOC_Os05g10770 transcription factor jumonji, putative, expressed FN3028-S Chr5 5937001 5959000 0 0 Deletion 21999 LOC_Os05g10780 aminotransferase, classes I and II, domain containing protein, expressed FN3028-S Chr5 5937001 5959000 0 0 Deletion 21999 LOC_Os05g11580 expressed protein FN3028-S Chr5 6549001 6574000 0 0 Deletion 24999 LOC_Os05g11580 expressed protein FN3028-S Chr5 6549001 6574000 0 0 Deletion 24999 LOC_Os05g11590 expressed protein FN3028-S Chr5 6549001 6574000 0 0 Deletion 24999 LOC_Os05g11600 expressed protein FN3028-S Chr5 6975001 7010000 0 0 Deletion 34999 LOC_Os05g12190 chalcone synthase, putative, expressed FN3028-S Chr5 6975001 7010000 0 0 Deletion 34999 LOC_Os05g12200 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr5 6975001 7010000 0 0 Deletion 34999 LOC_Os05g12210 chalcone synthase, putative, expressed FN3028-S Chr5 6975001 7010000 0 0 Deletion 34999 LOC_Os05g12220 hypothetical protein FN3028-S Chr5 6975001 7010000 0 0 Deletion 34999 LOC_Os05g12230 expressed protein FN3028-S Chr5 6975001 7010000 0 0 Deletion 34999 LOC_Os05g12240 chalcone synthase, putative, expressed FN3028-S Chr5 6975001 7010000 0 0 Deletion 34999 LOC_Os05g12280 clumping factor A precursor, putative, expressed FN3028-S Chr5 7049001 7094000 0 0 Deletion 44999 LOC_Os05g12290 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 7049001 7094000 0 0 Deletion 44999 LOC_Os05g12300 expressed protein FN3028-S Chr5 7049001 7094000 0 0 Deletion 44999 LOC_Os05g12310 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 7049001 7094000 0 0 Deletion 44999 LOC_Os05g12320 nodulin MtN3 family protein, putative, expressed FN3028-S Chr5 7049001 7094000 0 0 Deletion 44999 LOC_Os05g12330 uncharacterized protein KIAA1310, putative, expressed FN3028-S Chr5 7049001 7094000 0 0 Deletion 44999 LOC_Os05g12340 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 7049001 7094000 0 0 Deletion 44999 LOC_Os05g12610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr5 7241001 7252000 0 0 Deletion 10999 LOC_Os05g12630 expressed protein FN3028-S Chr5 7241001 7252000 0 0 Deletion 10999 LOC_Os05g14080 expressed protein FN3028-S Chr5 8229001 8254000 0 0 Deletion 24999 LOC_Os05g14540 hypothetical protein FN3028-S Chr5 8379001 8431000 0 0 Deletion 51999 LOC_Os05g14760 expressed protein FN3028-S Chr5 8379001 8431000 0 0 Deletion 51999 LOC_Os05g14770 expressed protein FN3028-S Chr5 8379001 8431000 0 0 Deletion 51999 LOC_Os05g14780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr5 8379001 8431000 0 0 Deletion 51999 LOC_Os05g14790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr5 8379001 8431000 0 0 Deletion 51999 LOC_Os05g14800 cycloartenol synthase, putative, expressed FN3028-S Chr5 8379001 8431000 0 0 Deletion 51999 LOC_Os05g14810 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr5 8379001 8431000 0 0 Deletion 51999 LOC_Os05g14820 transmembrane amino acid transporter protein, putative, expressed FN3028-S Chr5 8379001 8431000 0 0 Deletion 51999 LOC_Os05g14830 expressed protein FN3028-S Chr5 8379001 8431000 0 0 Deletion 51999 LOC_Os05g15040 NB-ARC domain containing protein, expressed FN3028-S Chr5 8524001 8537000 0 0 Deletion 12999 LOC_Os05g15950 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 8551084 8551086 0 0 Deletion 2 upstream_gene_variant HET FN3028-S Chr5 9193001 9241000 0 0 Deletion 47999 LOC_Os05g16260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr5 9193001 9241000 0 0 Deletion 47999 LOC_Os05g16270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr5 9193001 9241000 0 0 Deletion 47999 LOC_Os05g16280 transposon protein, putative, unclassified, expressed FN3028-S Chr5 9193001 9241000 0 0 Deletion 47999 LOC_Os05g16290 transposon protein, putative, unclassified, expressed FN3028-S Chr5 9193001 9241000 0 0 Deletion 47999 LOC_Os05g16300 expressed protein FN3028-S Chr5 9708001 9742000 0 0 Deletion 33999 LOC_Os05g17010 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 9708001 9742000 0 0 Deletion 33999 LOC_Os05g17020 expressed protein FN3028-S Chr5 9708001 9742000 0 0 Deletion 33999 LOC_Os05g17030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr5 9708001 9742000 0 0 Deletion 33999 LOC_Os05g17040 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr5 9708001 9742000 0 0 Deletion 33999 LOC_Os05g17050 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 1148001 1165000 0 0 Deletion 16999 LOC_Os06g03130 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr6 1148001 1165000 0 0 Deletion 16999 LOC_Os06g06850 resistance protein LR10, putative, expressed FN3028-S Chr6 11843001 11859000 0 0 Deletion 15999 LOC_Os06g20580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 11843001 11859000 0 0 Deletion 15999 LOC_Os06g20590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 11843001 11859000 0 0 Deletion 15999 LOC_Os06g20600 retrotransposon protein, putative, unclassified FN3028-S Chr6 11843001 11859000 0 0 Deletion 15999 LOC_Os06g20790 SAM dependent carboxyl methyltransferase, putative, expressed FN3028-S Chr6 11988001 12023000 0 0 Deletion 34999 LOC_Os06g20800 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 11988001 12023000 0 0 Deletion 34999 LOC_Os06g20810 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 11988001 12023000 0 0 Deletion 34999 LOC_Os06g20820 expressed protein FN3028-S Chr6 11988001 12023000 0 0 Deletion 34999 LOC_Os06g20860 paramyosin, putative, expressed FN3028-S Chr6 12048001 12071000 0 0 Deletion 22999 LOC_Os06g20870 pentatricopeptide repeat protein PPR1106-17, putative, expressed FN3028-S Chr6 12048001 12071000 0 0 Deletion 22999 LOC_Os06g20879 expressed protein FN3028-S Chr6 12048001 12071000 0 0 Deletion 22999 LOC_Os06g20960 SAM dependent carboxyl methyltransferase, putative, expressed FN3028-S Chr6 12112001 12175000 0 0 Deletion 62999 LOC_Os06g20960 SAM dependent carboxyl methyltransferase, putative, expressed FN3028-S Chr6 12112001 12175000 0 0 Deletion 62999 LOC_Os06g20970 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 12112001 12175000 0 0 Deletion 62999 LOC_Os06g20980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 12112001 12175000 0 0 Deletion 62999 LOC_Os06g20990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 12112001 12175000 0 0 Deletion 62999 LOC_Os06g21000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 12112001 12175000 0 0 Deletion 62999 LOC_Os06g21010 transposon protein, putative, unclassified, expressed FN3028-S Chr6 12112001 12175000 0 0 Deletion 62999 LOC_Os06g21020 methyltransferase, putative, expressed FN3028-S Chr6 12112001 12175000 0 0 Deletion 62999 LOC_Os06g21030 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 12112001 12175000 0 0 Deletion 62999 LOC_Os06g21040 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr6 12112001 12175000 0 0 Deletion 62999 LOC_Os06g21050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 12112001 12175000 0 0 Deletion 62999 LOC_Os06g21059 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 12112001 12175000 0 0 Deletion 62999 LOC_Os06g21068 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr6 12159237 12159237 0 0 Insertion 2 downstream_gene_variant HET FN3028-S Chr6 12289001 12319000 0 0 Deletion 29999 LOC_Os06g21270 glycine rich protein family protein, putative, expressed FN3028-S Chr6 12289001 12319000 0 0 Deletion 29999 LOC_Os06g21280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 12289001 12319000 0 0 Deletion 29999 LOC_Os06g21290 expressed protein FN3028-S Chr6 12289001 12319000 0 0 Deletion 29999 LOC_Os06g21300 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 12289001 12319000 0 0 Deletion 29999 LOC_Os06g21310 glycine-rich cell wall structural protein precursor, putative, expressed FN3028-S Chr6 12289001 12319000 0 0 Deletion 29999 LOC_Os06g21320 hypothetical protein FN3028-S Chr6 12289001 12319000 0 0 Deletion 29999 LOC_Os06g21330 ABB1 - Ankyrin repeat region with 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains, expressed FN3028-S Chr6 12289001 12319000 0 0 Deletion 29999 LOC_Os06g21730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 12558001 12568000 0 0 Deletion 9999 LOC_Os06g21730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 12558001 12568000 0 0 Deletion 9999 LOC_Os06g21740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 12890001 12906000 0 0 Deletion 15999 LOC_Os06g22230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 12890001 12906000 0 0 Deletion 15999 LOC_Os06g22240 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 12890001 12906000 0 0 Deletion 15999 LOC_Os06g22450 expressed protein FN3028-S Chr6 13053001 13090000 0 0 Deletion 36999 LOC_Os06g22460 disease resistance protein RPM1, putative, expressed FN3028-S Chr6 13053001 13090000 0 0 Deletion 36999 LOC_Os06g22470 hypothetical protein FN3028-S Chr6 13053001 13090000 0 0 Deletion 36999 LOC_Os06g22480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 13053001 13090000 0 0 Deletion 36999 LOC_Os06g22490 sphingolipid C4-hydroxylase SUR2, putative, expressed FN3028-S Chr6 13053001 13090000 0 0 Deletion 36999 LOC_Os06g22500 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 13053001 13090000 0 0 Deletion 36999 LOC_Os06g22510 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 13053001 13090000 0 0 Deletion 36999 LOC_Os06g22520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 13053001 13090000 0 0 Deletion 36999 LOC_Os06g22650 VHS and GAT domain containing protein, expressed FN3028-S Chr6 13167001 13187000 0 0 Deletion 19999 LOC_Os06g22654 expressed protein FN3028-S Chr6 13167001 13187000 0 0 Deletion 19999 LOC_Os06g22660 EMB1303, putative, expressed FN3028-S Chr6 13167001 13187000 0 0 Deletion 19999 LOC_Os06g22670 tesmin/TSO1-like CXC domain containing protein, expressed FN3028-S Chr6 13167001 13187000 0 0 Deletion 19999 LOC_Os06g22770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 13254001 13270000 0 0 Deletion 15999 LOC_Os06g22780 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr6 13254001 13270000 0 0 Deletion 15999 LOC_Os06g22790 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 13254001 13270000 0 0 Deletion 15999 LOC_Os06g23230 transposon protein, putative, unclassified, expressed FN3028-S Chr6 13566001 13582000 0 0 Deletion 15999 LOC_Os06g23240 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr6 13566001 13582000 0 0 Deletion 15999 LOC_Os06g23250 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr6 13566001 13582000 0 0 Deletion 15999 LOC_Os06g23260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 13566001 13582000 0 0 Deletion 15999 LOC_Os06g23340 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 13627001 13647000 0 0 Deletion 19999 LOC_Os06g23350 late embryogenesis abundant protein D-34, putative, expressed FN3028-S Chr6 13627001 13647000 0 0 Deletion 19999 LOC_Os06g23360 LTPL70 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3028-S Chr6 13627001 13647000 0 0 Deletion 19999 LOC_Os06g23370 expressed protein FN3028-S Chr6 13627001 13647000 0 0 Deletion 19999 LOC_Os06g23450 retrotransposon protein, putative, unclassified FN3028-S Chr6 13688001 13726000 0 0 Deletion 37999 LOC_Os06g23460 KH domain containing protein, putative, expressed FN3028-S Chr6 13688001 13726000 0 0 Deletion 37999 LOC_Os06g23470 hypothetical protein FN3028-S Chr6 13688001 13726000 0 0 Deletion 37999 LOC_Os06g23480 expressed protein FN3028-S Chr6 13688001 13726000 0 0 Deletion 37999 LOC_Os06g23504 DTW domain containing protein, putative, expressed FN3028-S Chr6 13688001 13726000 0 0 Deletion 37999 LOC_Os06g23530 pre-mRNA-splicing factor ATP-dependent RNA helicase, putative, expressed FN3028-S Chr6 13688001 13726000 0 0 Deletion 37999 LOC_Os06g23580 expressed protein FN3028-S Chr6 13752001 13770000 0 0 Deletion 17999 LOC_Os06g23590 expressed protein FN3028-S Chr6 13752001 13770000 0 0 Deletion 17999 LOC_Os06g23600 expressed protein FN3028-S Chr6 13752001 13770000 0 0 Deletion 17999 LOC_Os06g23684 tyrosine aminotransferase, putative, expressed FN3028-S Chr6 13832001 13900000 0 0 Deletion 67999 LOC_Os06g23710 retrotransposon protein, putative, unclassified FN3028-S Chr6 13832001 13900000 0 0 Deletion 67999 LOC_Os06g23720 retrotransposon protein, putative, unclassified FN3028-S Chr6 13832001 13900000 0 0 Deletion 67999 LOC_Os06g23730 retrotransposon, putative, centromere-specific FN3028-S Chr6 13832001 13900000 0 0 Deletion 67999 LOC_Os06g23740 expressed protein FN3028-S Chr6 13832001 13900000 0 0 Deletion 67999 LOC_Os06g23750 expressed protein FN3028-S Chr6 13832001 13900000 0 0 Deletion 67999 LOC_Os06g23760 acyl-CoA oxidase, putative, expressed FN3028-S Chr6 13832001 13900000 0 0 Deletion 67999 LOC_Os06g23770 expressed protein FN3028-S Chr6 13832001 13900000 0 0 Deletion 67999 LOC_Os06g23775 expressed protein FN3028-S Chr6 13832001 13900000 0 0 Deletion 67999 LOC_Os06g23780 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed FN3028-S Chr6 13832001 13900000 0 0 Deletion 67999 LOC_Os06g23840 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 13929001 13973000 0 0 Deletion 43999 LOC_Os06g23850 expressed protein FN3028-S Chr6 13929001 13973000 0 0 Deletion 43999 LOC_Os06g23860 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr6 13929001 13973000 0 0 Deletion 43999 LOC_Os06g23870 acyl-CoA dehydrogenase domain protein, putative, expressed FN3028-S Chr6 13929001 13973000 0 0 Deletion 43999 LOC_Os06g23880 hypothetical protein FN3028-S Chr6 13929001 13973000 0 0 Deletion 43999 LOC_Os06g23890 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 13929001 13973000 0 0 Deletion 43999 LOC_Os06g23900 hypothetical protein FN3028-S Chr6 13929001 13973000 0 0 Deletion 43999 LOC_Os06g23910 expressed protein FN3028-S Chr6 13929001 13973000 0 0 Deletion 43999 LOC_Os06g24150 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr6 14127001 14180000 0 0 Deletion 52999 LOC_Os06g24160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 14127001 14180000 0 0 Deletion 52999 LOC_Os06g24170 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 14127001 14180000 0 0 Deletion 52999 LOC_Os06g24180 cytochrome P450 84A1, putative, expressed FN3028-S Chr6 14127001 14180000 0 0 Deletion 52999 LOC_Os06g24190 expressed protein FN3028-S Chr6 14127001 14180000 0 0 Deletion 52999 LOC_Os06g24200 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 14127001 14180000 0 0 Deletion 52999 LOC_Os06g24210 expressed protein FN3028-S Chr6 14127001 14180000 0 0 Deletion 52999 LOC_Os06g24220 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 14127001 14180000 0 0 Deletion 52999 LOC_Os06g24310 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 14225001 14342000 0 0 Deletion 116999 LOC_Os06g24320 transposon protein, putative, unclassified FN3028-S Chr6 14225001 14342000 0 0 Deletion 116999 LOC_Os06g24350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 14225001 14342000 0 0 Deletion 116999 LOC_Os06g24360 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr6 14225001 14342000 0 0 Deletion 116999 LOC_Os06g24370 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr6 14225001 14342000 0 0 Deletion 116999 LOC_Os06g24380 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr6 14225001 14342000 0 0 Deletion 116999 LOC_Os06g24390 expressed protein FN3028-S Chr6 14225001 14342000 0 0 Deletion 116999 LOC_Os06g24404 GDSL-like lipase/acylhydrolase, putative, expressed FN3028-S Chr6 14225001 14342000 0 0 Deletion 116999 LOC_Os06g24420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 14225001 14342000 0 0 Deletion 116999 LOC_Os06g24430 expressed protein FN3028-S Chr6 14225001 14342000 0 0 Deletion 116999 LOC_Os06g24440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 14225001 14342000 0 0 Deletion 116999 LOC_Os06g24450 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr6 14225001 14342000 0 0 Deletion 116999 LOC_Os06g24460 pleiotropic drug resistance protein 2, putative, expressed FN3028-S Chr6 14225001 14342000 0 0 Deletion 116999 LOC_Os06g24470 expressed protein FN3028-S Chr6 14225001 14342000 0 0 Deletion 116999 LOC_Os06g24594 exonuclease, putative, expressed FN3028-S Chr6 14424001 14451000 0 0 Deletion 26999 LOC_Os06g24610 hypothetical protein FN3028-S Chr6 14424001 14451000 0 0 Deletion 26999 LOC_Os06g24660 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 14479001 14504000 0 0 Deletion 24999 LOC_Os06g24670 retrotransposon protein, putative, unclassified FN3028-S Chr6 14479001 14504000 0 0 Deletion 24999 LOC_Os06g24680 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 14479001 14504000 0 0 Deletion 24999 LOC_Os06g24690 hypothetical protein FN3028-S Chr6 14479001 14504000 0 0 Deletion 24999 LOC_Os06g24720 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr6 14521001 14544000 0 0 Deletion 22999 LOC_Os06g24730 hydrolase, alpha/beta fold family domain containing protein, expressed FN3028-S Chr6 14521001 14544000 0 0 Deletion 22999 LOC_Os06g24750 transposon protein, putative, Mariner sub-class, expressed FN3028-S Chr6 14521001 14544000 0 0 Deletion 22999 LOC_Os06g24760 retrotransposon protein, putative, unclassified FN3028-S Chr6 14521001 14544000 0 0 Deletion 22999 LOC_Os06g25280 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr6 14798001 14856000 0 0 Deletion 57999 LOC_Os06g25290 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr6 14798001 14856000 0 0 Deletion 57999 LOC_Os06g25294 60S ribosomal protein L18a-1, putative, expressed FN3028-S Chr6 14798001 14856000 0 0 Deletion 57999 LOC_Os06g25300 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr6 14798001 14856000 0 0 Deletion 57999 LOC_Os06g25310 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr6 14798001 14856000 0 0 Deletion 57999 LOC_Os06g25320 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 14798001 14856000 0 0 Deletion 57999 LOC_Os06g25330 retrotransposon protein, putative, unclassified FN3028-S Chr6 14798001 14856000 0 0 Deletion 57999 LOC_Os06g25340 hypothetical protein FN3028-S Chr6 14798001 14856000 0 0 Deletion 57999 LOC_Os06g25350 retrotransposon protein, putative, unclassified FN3028-S Chr6 14798001 14856000 0 0 Deletion 57999 LOC_Os06g25460 expressed protein FN3028-S Chr6 14882001 14937000 0 0 Deletion 54999 LOC_Os06g25460 expressed protein FN3028-S Chr6 14882001 14937000 0 0 Deletion 54999 LOC_Os06g25470 expressed protein FN3028-S Chr6 14882001 14937000 0 0 Deletion 54999 LOC_Os06g25500 expressed protein FN3028-S Chr6 14882001 14937000 0 0 Deletion 54999 LOC_Os06g25510 expressed protein FN3028-S Chr6 14882001 14937000 0 0 Deletion 54999 LOC_Os06g25520 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 14882001 14937000 0 0 Deletion 54999 LOC_Os06g25530 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 14882001 14937000 0 0 Deletion 54999 LOC_Os06g25540 expressed protein FN3028-S Chr6 14988001 15056000 0 0 Deletion 67999 LOC_Os06g25650 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr6 14988001 15056000 0 0 Deletion 67999 LOC_Os06g25660 transposon protein, putative, unclassified, expressed FN3028-S Chr6 14988001 15056000 0 0 Deletion 67999 LOC_Os06g25670 expressed protein FN3028-S Chr6 14988001 15056000 0 0 Deletion 67999 LOC_Os06g25680 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr6 14988001 15056000 0 0 Deletion 67999 LOC_Os06g25690 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 14988001 15056000 0 0 Deletion 67999 LOC_Os06g25700 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 14988001 15056000 0 0 Deletion 67999 LOC_Os06g25710 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 14988001 15056000 0 0 Deletion 67999 LOC_Os06g25720 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr6 14988001 15056000 0 0 Deletion 67999 LOC_Os06g25730 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 14988001 15056000 0 0 Deletion 67999 LOC_Os06g25740 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 14988001 15056000 0 0 Deletion 67999 LOC_Os06g25750 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr6 14988001 15056000 0 0 Deletion 67999 LOC_Os06g25760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 14988001 15056000 0 0 Deletion 67999 LOC_Os06g25770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 14988001 15056000 0 0 Deletion 67999 LOC_Os06g27440 conserved hypothetical protein FN3028-S Chr6 15531001 15571000 0 0 Deletion 39999 LOC_Os06g27450 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 15531001 15571000 0 0 Deletion 39999 LOC_Os06g27460 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 15531001 15571000 0 0 Deletion 39999 LOC_Os06g27470 retrotransposon, putative, centromere-specific FN3028-S Chr6 15531001 15571000 0 0 Deletion 39999 LOC_Os06g27480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 15531001 15571000 0 0 Deletion 39999 LOC_Os06g27490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 15531001 15571000 0 0 Deletion 39999 LOC_Os06g27500 retrotransposon protein, putative, unclassified FN3028-S Chr6 15531001 15571000 0 0 Deletion 39999 LOC_Os06g27810 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 15746001 15780000 0 0 Deletion 33999 LOC_Os06g27820 expressed protein FN3028-S Chr6 15746001 15780000 0 0 Deletion 33999 LOC_Os06g27830 expressed protein FN3028-S Chr6 15746001 15780000 0 0 Deletion 33999 LOC_Os06g27840 retrotransposon protein, putative, LINE subclass, expressed FN3028-S Chr6 15746001 15780000 0 0 Deletion 33999 LOC_Os06g27850 peroxidase precursor, putative, expressed FN3028-S Chr6 15746001 15780000 0 0 Deletion 33999 LOC_Os06g27880 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 15801001 15823000 0 0 Deletion 21999 LOC_Os06g27880 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 15801001 15823000 0 0 Deletion 21999 LOC_Os06g27890 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed FN3028-S Chr6 16078001 16096000 0 0 Deletion 17999 LOC_Os06g28320 retrotransposon, putative, centromere-specific FN3028-S Chr6 16078001 16096000 0 0 Deletion 17999 LOC_Os06g28330 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 16078001 16096000 0 0 Deletion 17999 LOC_Os06g28660 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 16312001 16330000 0 0 Deletion 17999 LOC_Os06g28670 polygalacturonase, putative, expressed FN3028-S Chr6 16312001 16330000 0 0 Deletion 17999 LOC_Os06g29030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 16546001 16620000 0 0 Deletion 73999 LOC_Os06g29040 retrotransposon protein, putative, unclassified FN3028-S Chr6 16546001 16620000 0 0 Deletion 73999 LOC_Os06g29050 transposon protein, putative, unclassified, expressed FN3028-S Chr6 16546001 16620000 0 0 Deletion 73999 LOC_Os06g29060 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 16546001 16620000 0 0 Deletion 73999 LOC_Os06g29070 retrotransposon protein, putative, unclassified FN3028-S Chr6 16546001 16620000 0 0 Deletion 73999 LOC_Os06g29080 expressed protein FN3028-S Chr6 16546001 16620000 0 0 Deletion 73999 LOC_Os06g29100 expressed protein FN3028-S Chr6 16546001 16620000 0 0 Deletion 73999 LOC_Os06g29110 MLO domain containing protein, putative, expressed FN3028-S Chr6 16546001 16620000 0 0 Deletion 73999 LOC_Os06g29120 STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed FN3028-S Chr6 16864001 16880000 0 0 Deletion 15999 LOC_Os06g29450 expressed protein FN3028-S Chr6 16864001 16880000 0 0 Deletion 15999 LOC_Os06g29460 expressed protein FN3028-S Chr6 16864001 16880000 0 0 Deletion 15999 LOC_Os06g29490 expressed protein FN3028-S Chr6 16916001 16952000 0 0 Deletion 35999 LOC_Os06g29520 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 16916001 16952000 0 0 Deletion 35999 LOC_Os06g29530 retrotransposon protein, putative, unclassified FN3028-S Chr6 16916001 16952000 0 0 Deletion 35999 LOC_Os06g29540 expressed protein FN3028-S Chr6 16916001 16952000 0 0 Deletion 35999 LOC_Os06g29550 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 16916001 16952000 0 0 Deletion 35999 LOC_Os06g29560 expressed protein FN3028-S Chr6 16916001 16952000 0 0 Deletion 35999 LOC_Os06g29570 retrotransposon protein, putative, unclassified FN3028-S Chr6 16916001 16952000 0 0 Deletion 35999 LOC_Os06g29580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 16916001 16952000 0 0 Deletion 35999 LOC_Os06g29630 transposon protein, putative, unclassified, expressed FN3028-S Chr6 16992001 17005000 0 0 Deletion 12999 LOC_Os06g29640 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 16992001 17005000 0 0 Deletion 12999 LOC_Os06g29650 CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1, putative, expressed FN3028-S Chr6 16992001 17005000 0 0 Deletion 12999 LOC_Os06g29679 expressed protein FN3028-S Chr6 17030001 17064000 0 0 Deletion 33999 LOC_Os06g29690 dynein light chain type 1 domain containing protein, expressed FN3028-S Chr6 17030001 17064000 0 0 Deletion 33999 LOC_Os06g29700 OsFBD11 - F-box and FBD domain containing protein, expressed FN3028-S Chr6 17030001 17064000 0 0 Deletion 33999 LOC_Os06g29710 OsFBD12 - F-box and FBD domain containing protein, expressed FN3028-S Chr6 17051047 Chr2 27928596 0 Translocation 0 FN3028-S Chr6 17313135 17313159 0 0 Deletion 24 INTRON HET FN3028-S Chr6 17314001 17342000 0 0 Deletion 27999 LOC_Os06g30060 expressed protein FN3028-S Chr6 17314001 17342000 0 0 Deletion 27999 LOC_Os06g30070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 17314001 17342000 0 0 Deletion 27999 LOC_Os06g30080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 17633001 17712000 0 0 Deletion 78999 LOC_Os06g30520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 17633001 17712000 0 0 Deletion 78999 LOC_Os06g30530 expressed protein FN3028-S Chr6 17633001 17712000 0 0 Deletion 78999 LOC_Os06g30540 expressed protein FN3028-S Chr6 17633001 17712000 0 0 Deletion 78999 LOC_Os06g30550 expressed protein FN3028-S Chr6 17633001 17712000 0 0 Deletion 78999 LOC_Os06g30560 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 17633001 17712000 0 0 Deletion 78999 LOC_Os06g30570 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 17633001 17712000 0 0 Deletion 78999 LOC_Os06g30580 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr6 17633001 17712000 0 0 Deletion 78999 LOC_Os06g30590 expressed protein FN3028-S Chr6 17633001 17712000 0 0 Deletion 78999 LOC_Os06g30600 expressed protein FN3028-S Chr6 17633001 17712000 0 0 Deletion 78999 LOC_Os06g30610 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 17633001 17712000 0 0 Deletion 78999 LOC_Os06g33820 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 19672001 19688000 0 0 Deletion 15999 LOC_Os06g33830 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr6 19672001 19688000 0 0 Deletion 15999 LOC_Os06g33840 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 19672001 19688000 0 0 Deletion 15999 LOC_Os06g34140 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 19879001 19889000 0 0 Deletion 9999 LOC_Os06g34230 retrotransposon protein, putative, unclassified FN3028-S Chr6 19930001 20008000 0 0 Deletion 77999 LOC_Os06g34240 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 19930001 20008000 0 0 Deletion 77999 LOC_Os06g34250 expressed protein FN3028-S Chr6 19930001 20008000 0 0 Deletion 77999 LOC_Os06g34260 hypothetical protein FN3028-S Chr6 19930001 20008000 0 0 Deletion 77999 LOC_Os06g34270 hypothetical protein FN3028-S Chr6 19930001 20008000 0 0 Deletion 77999 LOC_Os06g34280 expressed protein FN3028-S Chr6 19930001 20008000 0 0 Deletion 77999 LOC_Os06g34290 retrotransposon protein, putative, unclassified FN3028-S Chr6 19930001 20008000 0 0 Deletion 77999 LOC_Os06g34300 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr6 19930001 20008000 0 0 Deletion 77999 LOC_Os06g34310 retrotransposon protein, putative, unclassified FN3028-S Chr6 19930001 20008000 0 0 Deletion 77999 LOC_Os06g34320 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 19930001 20008000 0 0 Deletion 77999 LOC_Os06g34330 expressed protein FN3028-S Chr6 19930001 20008000 0 0 Deletion 77999 LOC_Os06g34340 expressed protein FN3028-S Chr6 19930001 20008000 0 0 Deletion 77999 LOC_Os06g34350 expressed protein FN3028-S Chr6 19930001 20008000 0 0 Deletion 77999 LOC_Os06g34360 zinc finger, C3HC4 type domain containing protein, expressed FN3028-S Chr6 19930001 20008000 0 0 Deletion 77999 LOC_Os06g34370 transposon protein, putative, Pong sub-class, expressed FN3028-S Chr6 19930001 20008000 0 0 Deletion 77999 LOC_Os06g34420 DEAD/DEAH box helicase domain protein, putative, expressed FN3028-S Chr6 20030001 20050000 0 0 Deletion 19999 LOC_Os06g34430 zinc finger protein, putative, expressed FN3028-S Chr6 20030001 20050000 0 0 Deletion 19999 LOC_Os06g34440 dnaJ domain containing protein, expressed FN3028-S Chr6 20030001 20050000 0 0 Deletion 19999 LOC_Os06g35050 arogenate dehydrogenase 1, chloroplast precursor, putative, expressed FN3028-S Chr6 20402001 20453000 0 0 Deletion 50999 LOC_Os06g35060 heavy metal-associated domain containing protein, expressed FN3028-S Chr6 20402001 20453000 0 0 Deletion 50999 LOC_Os06g35070 expressed protein FN3028-S Chr6 20402001 20453000 0 0 Deletion 50999 LOC_Os06g35080 F-box domain containing protein, expressed FN3028-S Chr6 20402001 20453000 0 0 Deletion 50999 LOC_Os06g35090 expressed protein FN3028-S Chr6 20402001 20453000 0 0 Deletion 50999 LOC_Os06g35100 expressed protein FN3028-S Chr6 20402001 20453000 0 0 Deletion 50999 LOC_Os06g35110 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr6 20402001 20453000 0 0 Deletion 50999 LOC_Os06g35120 retrotransposon protein, putative, LINE subclass, expressed FN3028-S Chr6 20402001 20453000 0 0 Deletion 50999 LOC_Os06g35130 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 20402001 20453000 0 0 Deletion 50999 LOC_Os06g35970 meiosis 5, putative, expressed FN3028-S Chr6 21005001 21027000 0 0 Deletion 21999 LOC_Os06g35980 expressed protein FN3028-S Chr6 21005001 21027000 0 0 Deletion 21999 LOC_Os06g35990 expressed protein FN3028-S Chr6 21005001 21027000 0 0 Deletion 21999 LOC_Os06g36270 receptor-like protein kinase 5 precursor, putative, expressed FN3028-S Chr6 21259001 21295000 0 0 Deletion 35999 LOC_Os06g36280 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr6 21259001 21295000 0 0 Deletion 35999 LOC_Os06g36290 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr6 21259001 21295000 0 0 Deletion 35999 LOC_Os06g36310 receptor-like protein kinase 5 precursor, putative, expressed FN3028-S Chr6 21259001 21295000 0 0 Deletion 35999 LOC_Os06g36320 receptor-like protein kinase 5 precursor, putative, expressed FN3028-S Chr6 21259001 21295000 0 0 Deletion 35999 LOC_Os06g40080 heme oxygenase 1, putative, expressed FN3028-S Chr6 21266472 21266490 0 0 Deletion 18 downstream_gene_variant HET FN3028-S Chr6 23853001 23874000 0 0 Deletion 20999 LOC_Os06g40090 VQ domain containing protein, putative, expressed FN3028-S Chr6 23853001 23874000 0 0 Deletion 20999 LOC_Os06g40110 RNA polymerase Rpc34 subunit family protein, expressed FN3028-S Chr6 23853001 23874000 0 0 Deletion 20999 LOC_Os06g40590 expressed protein FN3028-S Chr6 24206001 24230000 0 0 Deletion 23999 LOC_Os06g40600 elongation factor, putative, expressed FN3028-S Chr6 24206001 24230000 0 0 Deletion 23999 LOC_Os06g40609 expressed protein FN3028-S Chr6 24206001 24230000 0 0 Deletion 23999 LOC_Os06g40620 SNF7 domain containing protein, putative, expressed FN3028-S Chr6 24206001 24230000 0 0 Deletion 23999 LOC_Os06g40630 SFT2, putative, expressed FN3028-S Chr6 24206001 24230000 0 0 Deletion 23999 LOC_Os06g40640 fructose-bisphospate aldolase isozyme, putative, expressed FN3028-S Chr6 24206001 24230000 0 0 Deletion 23999 LOC_Os06g40650 copine-1, putative, expressed FN3028-S Chr6 24206001 24230000 0 0 Deletion 23999 LOC_Os06g40950 DNA-directed RNA polymerase I subunit RPA1, putative, expressed FN3028-S Chr6 24414001 24428000 0 0 Deletion 13999 LOC_Os06g41150 expressed protein FN3028-S Chr6 24624001 24665000 0 0 Deletion 40999 LOC_Os06g41160 expressed protein FN3028-S Chr6 24624001 24665000 0 0 Deletion 40999 LOC_Os06g41170 retrotransposon protein, putative, unclassified FN3028-S Chr6 24624001 24665000 0 0 Deletion 40999 LOC_Os06g41180 retrotransposon protein, putative, unclassified FN3028-S Chr6 24624001 24665000 0 0 Deletion 40999 LOC_Os06g41190 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr6 24624001 24665000 0 0 Deletion 40999 LOC_Os06g41200 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr6 25435001 25510000 0 0 Deletion 74999 LOC_Os06g42350 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 25435001 25510000 0 0 Deletion 74999 LOC_Os06g42360 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 25435001 25510000 0 0 Deletion 74999 LOC_Os06g42370 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 25435001 25510000 0 0 Deletion 74999 LOC_Os06g42380 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 25435001 25510000 0 0 Deletion 74999 LOC_Os06g42390 expressed protein FN3028-S Chr6 25435001 25510000 0 0 Deletion 74999 LOC_Os06g42400 transposon protein, putative, unclassified, expressed FN3028-S Chr6 25435001 25510000 0 0 Deletion 74999 LOC_Os06g42410 expressed protein FN3028-S Chr6 25435001 25510000 0 0 Deletion 74999 LOC_Os06g42420 transposon protein, putative, unclassified, expressed FN3028-S Chr6 25435001 25510000 0 0 Deletion 74999 LOC_Os06g42430 expressed protein FN3028-S Chr6 25435001 25510000 0 0 Deletion 74999 LOC_Os06g42440 expressed protein FN3028-S Chr6 27299001 27322000 0 0 Deletion 22999 LOC_Os06g45150 pollen allergen, putative, expressed FN3028-S Chr6 27299001 27322000 0 0 Deletion 22999 LOC_Os06g45160 pollen allergen, putative, expressed FN3028-S Chr6 27299001 27322000 0 0 Deletion 22999 LOC_Os06g45170 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 27299001 27322000 0 0 Deletion 22999 LOC_Os06g45180 pollen allergen, putative, expressed FN3028-S Chr6 27299001 27322000 0 0 Deletion 22999 LOC_Os06g45184 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 27681001 27697000 0 0 Deletion 15999 LOC_Os06g45730 MBTB11 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3028-S Chr6 27681001 27697000 0 0 Deletion 15999 LOC_Os06g45740 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 27681001 27697000 0 0 Deletion 15999 LOC_Os06g45750 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 27681001 27697000 0 0 Deletion 15999 LOC_Os06g45760 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 27681001 27697000 0 0 Deletion 15999 LOC_Os06g47470 TKL_IRAK_DUF26-lh.2 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3028-S Chr6 28756001 28812000 0 0 Deletion 55999 LOC_Os06g47480 expressed protein FN3028-S Chr6 28756001 28812000 0 0 Deletion 55999 LOC_Os06g47490 expressed protein FN3028-S Chr6 28756001 28812000 0 0 Deletion 55999 LOC_Os06g47500 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr6 28756001 28812000 0 0 Deletion 55999 LOC_Os06g47510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 28756001 28812000 0 0 Deletion 55999 LOC_Os06g47520 expressed protein FN3028-S Chr6 28756001 28812000 0 0 Deletion 55999 LOC_Os06g47530 TKL_IRAK_DUF26-lh.6 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3028-S Chr6 28756001 28812000 0 0 Deletion 55999 LOC_Os06g47540 expressed protein FN3028-S Chr6 28756001 28812000 0 0 Deletion 55999 LOC_Os06g47544 expressed protein FN3028-S Chr6 28756001 28812000 0 0 Deletion 55999 LOC_Os06g47550 cadmium/zinc-transporting ATPase, putative, expressed FN3028-S Chr6 28756001 28812000 0 0 Deletion 55999 LOC_Os06g47560 expressed protein FN3028-S Chr6 28756001 28812000 0 0 Deletion 55999 LOC_Os06g47570 PPR repeat containing protein, expressed FN3028-S Chr6 28756001 28812000 0 0 Deletion 55999 LOC_Os06g47580 REV1, putative, expressed FN3028-S Chr6 28756001 28812000 0 0 Deletion 55999 LOC_Os06g48200 glycosyl hydrolases family 16, putative, expressed FN3028-S Chr6 29154001 29183000 0 0 Deletion 28999 LOC_Os06g48210 DEAD-box ATP-dependent RNA helicase, putative, expressed FN3028-S Chr6 29154001 29183000 0 0 Deletion 28999 LOC_Os06g48220 expressed protein FN3028-S Chr6 29154001 29183000 0 0 Deletion 28999 LOC_Os06g48230 DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed FN3028-S Chr6 29154001 29183000 0 0 Deletion 28999 LOC_Os06g48235 expressed protein FN3028-S Chr6 29154001 29183000 0 0 Deletion 28999 LOC_Os06g48240 AAA ATPase, putative, expressed FN3028-S Chr6 29154001 29183000 0 0 Deletion 28999 LOC_Os06g50270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 30428001 30445000 0 0 Deletion 16999 LOC_Os06g50280 OsFBL31 - F-box domain and LRR containing protein, expressed FN3028-S Chr6 30428001 30445000 0 0 Deletion 16999 LOC_Os06g50290 transposon protein, putative, Pong sub-class, expressed FN3028-S Chr6 30428001 30445000 0 0 Deletion 16999 LOC_Os06g50300 heat shock protein, putative, expressed FN3028-S Chr6 30428001 30445000 0 0 Deletion 16999 LOC_Os06g50960 expansin precursor, putative, expressed FN3028-S Chr6 30848001 30864000 0 0 Deletion 15999 LOC_Os06g50970 expressed protein FN3028-S Chr6 30848001 30864000 0 0 Deletion 15999 LOC_Os06g50980 expressed protein FN3028-S Chr6 30848001 30864000 0 0 Deletion 15999 LOC_Os06g50990 expressed protein FN3028-S Chr6 30848001 30864000 0 0 Deletion 15999 LOC_Os07g01010 expressed protein FN3028-S Chr6 3234001 3246000 0 0 Deletion 11999 LOC_Os06g06860 MLA1, putative, expressed FN3028-S Chr6 3234001 3246000 0 0 Deletion 11999 LOC_Os06g07620 expressed protein FN3028-S Chr6 3685001 3762000 0 0 Deletion 76999 LOC_Os06g07630 26S protease regulatory subunit 6A, putative, expressed FN3028-S Chr6 3685001 3762000 0 0 Deletion 76999 LOC_Os06g07640 myb-like DNA-binding domain, SHAQKYF class family protein, expressed FN3028-S Chr6 3685001 3762000 0 0 Deletion 76999 LOC_Os06g07650 myb-like DNA-binding domain, SHAQKYF class family protein, expressed FN3028-S Chr6 3685001 3762000 0 0 Deletion 76999 LOC_Os06g07660 myb-like DNA-binding domain, SHAQKYF class family protein, expressed FN3028-S Chr6 3685001 3762000 0 0 Deletion 76999 LOC_Os06g07670 expressed protein FN3028-S Chr6 3685001 3762000 0 0 Deletion 76999 LOC_Os06g07690 expressed protein FN3028-S Chr6 3685001 3762000 0 0 Deletion 76999 LOC_Os06g07700 expressed protein FN3028-S Chr6 3685001 3762000 0 0 Deletion 76999 LOC_Os06g07710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 3685001 3762000 0 0 Deletion 76999 LOC_Os06g07720 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr6 3685001 3762000 0 0 Deletion 76999 LOC_Os06g07730 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 3685001 3762000 0 0 Deletion 76999 LOC_Os06g07740 myb-like DNA-binding domain, SHAQKYF class family protein, expressed FN3028-S Chr6 3685001 3762000 0 0 Deletion 76999 LOC_Os06g07750 expressed protein FN3028-S Chr6 3685001 3762000 0 0 Deletion 76999 LOC_Os06g07760 sulfiredoxin-1, putative, expressed FN3028-S Chr6 4002001 4023000 0 0 Deletion 20999 LOC_Os06g08280 protein kinase domain containing protein, expressed FN3028-S Chr6 4002001 4023000 0 0 Deletion 20999 LOC_Os06g08290 MYB family transcription factor, putative, expressed FN3028-S Chr6 4002001 4023000 0 0 Deletion 20999 LOC_Os06g08300 FAD dependent oxidoreductase domain containing protein, expressed FN3028-S Chr6 4002001 4023000 0 0 Deletion 20999 LOC_Os06g08884 expressed protein FN3028-S Chr6 4160593 4160594 0 0 Deletion 1 INTERGENIC HOMO FN3028-S Chr6 4467001 4483000 0 0 Deletion 15999 LOC_Os06g08890 glutamate receptor 3.4 precursor, putative, expressed FN3028-S Chr6 4467001 4483000 0 0 Deletion 15999 LOC_Os06g08900 glutamate receptor 2.6 precursor, putative, expressed FN3028-S Chr6 4467001 4483000 0 0 Deletion 15999 LOC_Os06g10650 tyrosine phosphatase family protein, putative, expressed FN3028-S Chr6 5559001 5609000 0 0 Deletion 49999 LOC_Os06g10660 lysM domain-containing GPI-anchored protein 1 precursor, putative, expressed FN3028-S Chr6 5559001 5609000 0 0 Deletion 49999 LOC_Os06g10670 aspartic proteinase nepenthesin-1 precursor, putative, expressed FN3028-S Chr6 5559001 5609000 0 0 Deletion 49999 LOC_Os06g10680 expressed protein FN3028-S Chr6 5559001 5609000 0 0 Deletion 49999 LOC_Os06g10690 PHD-finger domain containing protein, putative, expressed FN3028-S Chr6 5559001 5609000 0 0 Deletion 49999 LOC_Os06g10700 expressed protein FN3028-S Chr6 5559001 5609000 0 0 Deletion 49999 LOC_Os06g10710 expressed protein FN3028-S Chr6 5559001 5609000 0 0 Deletion 49999 LOC_Os06g10720 expressed protein FN3028-S Chr6 5559001 5609000 0 0 Deletion 49999 LOC_Os06g10730 expressed protein FN3028-S Chr6 5559001 5609000 0 0 Deletion 49999 LOC_Os06g10740 transposon protein, putative, unclassified, expressed FN3028-S Chr6 5559001 5609000 0 0 Deletion 49999 LOC_Os06g10790 lectin-like receptor kinase, putative, expressed FN3028-S Chr6 5599467 5599467 0 0 Insertion 4 upstream_gene_variant HET FN3028-S Chr6 5635001 5652000 0 0 Deletion 16999 LOC_Os06g10800 zinc finger family protein, putative, expressed FN3028-S Chr6 5635001 5652000 0 0 Deletion 16999 LOC_Os06g10810 phosphate carrier protein, mitochondrial precursor, putative, expressed FN3028-S Chr6 5635001 5652000 0 0 Deletion 16999 LOC_Os06g10820 helix-loop-helix DNA-binding domain containing protein, expressed FN3028-S Chr6 5635001 5652000 0 0 Deletion 16999 LOC_Os06g10830 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 5635001 5652000 0 0 Deletion 16999 LOC_Os06g11380 geminivirus Rep-interacting motor protein, putative, expressed FN3028-S Chr6 5985001 6005000 0 0 Deletion 19999 LOC_Os06g11390 expressed protein FN3028-S Chr6 5985001 6005000 0 0 Deletion 19999 LOC_Os06g11500 MCM9 - Putative minichromosome maintenance MCM family subunit 9, expressed FN3028-S Chr6 6091001 6108000 0 0 Deletion 16999 LOC_Os06g11510 expressed protein FN3028-S Chr6 6091001 6108000 0 0 Deletion 16999 LOC_Os06g11520 LMBR1 integral membrane protein, putative, expressed FN3028-S Chr6 6091001 6108000 0 0 Deletion 16999 LOC_Os06g11880 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 6189181 Chr1 23011326 0 Translocation 0 LOC_Os06g11670 expressed protein FN3028-S Chr6 6192930 Chr1 23011332 0 Translocation 0 FN3028-S Chr6 6319001 6357000 0 0 Deletion 37999 LOC_Os06g11890 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 6319001 6357000 0 0 Deletion 37999 LOC_Os06g11900 expressed protein FN3028-S Chr6 6319001 6357000 0 0 Deletion 37999 LOC_Os06g11910 expressed protein FN3028-S Chr6 6319001 6357000 0 0 Deletion 37999 LOC_Os06g11920 endonuclease/exonuclease/phosphatase family domain containing protein, expressed FN3028-S Chr6 6319001 6357000 0 0 Deletion 37999 LOC_Os06g11930 SNARE domain containing protein, putative, expressed FN3028-S Chr6 6319001 6357000 0 0 Deletion 37999 LOC_Os06g12950 expressed protein FN3028-S Chr6 740872 740872 0 0 Insertion 1 intergenic_region HET FN3028-S Chr6 7698001 7736000 0 0 Deletion 37999 LOC_Os06g13870 U-box protein CMPG1, putative, expressed FN3028-S Chr6 7698001 7736000 0 0 Deletion 37999 LOC_Os06g13880 expressed protein FN3028-S Chr6 7698001 7736000 0 0 Deletion 37999 LOC_Os06g13890 expressed protein FN3028-S Chr6 7698001 7736000 0 0 Deletion 37999 LOC_Os06g14310 potassium channel AKT1, putative, expressed FN3028-S Chr6 7982001 8002000 0 0 Deletion 19999 LOC_Os06g14324 caleosin related protein, putative, expressed FN3028-S Chr6 7982001 8002000 0 0 Deletion 19999 LOC_Os06g14340 hypothetical protein FN3028-S Chr6 7982001 8002000 0 0 Deletion 19999 LOC_Os06g14350 caleosin related protein, putative, expressed FN3028-S Chr6 7982001 8002000 0 0 Deletion 19999 LOC_Os06g14440 DRD1, putative, expressed FN3028-S Chr6 8079001 8099000 0 0 Deletion 19999 LOC_Os06g15420 asparagine synthetase, putative, expressed FN3028-S Chr6 8765001 8793000 0 0 Deletion 27999 LOC_Os06g15430 expressed protein FN3028-S Chr6 8765001 8793000 0 0 Deletion 27999 LOC_Os06g15440 expressed protein FN3028-S Chr6 8765001 8793000 0 0 Deletion 27999 LOC_Os06g15450 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr6 8765001 8793000 0 0 Deletion 27999 LOC_Os06g15460 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr6 8765001 8793000 0 0 Deletion 27999 LOC_Os06g15470 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr6 8765001 8793000 0 0 Deletion 27999 LOC_Os06g15480 transcription factor, putative, expressed FN3028-S Chr6 8765001 8793000 0 0 Deletion 27999 LOC_Os06g15490 expressed protein FN3028-S Chr6 8765001 8793000 0 0 Deletion 27999 LOC_Os06g16010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 9117001 9161000 0 0 Deletion 43999 LOC_Os06g16030 amidase family protein, putative, expressed FN3028-S Chr6 9117001 9161000 0 0 Deletion 43999 LOC_Os06g16040 expressed protein FN3028-S Chr6 9117001 9161000 0 0 Deletion 43999 LOC_Os06g16050 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 9117001 9161000 0 0 Deletion 43999 LOC_Os06g16060 zinc finger, C3HC4 type domain containing protein, expressed FN3028-S Chr6 9117001 9161000 0 0 Deletion 43999 LOC_Os06g16070 receptor-like protein kinase 2 precursor, putative, expressed FN3028-S Chr6 9117001 9161000 0 0 Deletion 43999 LOC_Os06g16080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 9117001 9161000 0 0 Deletion 43999 LOC_Os06g16090 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 9262001 9285000 0 0 Deletion 22999 LOC_Os06g16270 heat shock factor binding protein 2, putative, expressed FN3028-S Chr6 9262001 9285000 0 0 Deletion 22999 LOC_Os06g16280 expressed protein FN3028-S Chr6 9262001 9285000 0 0 Deletion 22999 LOC_Os06g16290 ribosomal protein L7Ae, putative, expressed FN3028-S Chr6 9262001 9285000 0 0 Deletion 22999 LOC_Os06g16760 expressed protein FN3028-S Chr6 9710001 9743000 0 0 Deletion 32999 LOC_Os06g16770 expressed protein FN3028-S Chr6 9710001 9743000 0 0 Deletion 32999 LOC_Os06g16780 expressed protein FN3028-S Chr6 9710001 9743000 0 0 Deletion 32999 LOC_Os06g16790 go35 NBS-LRR, putative, expressed FN3028-S Chr6 9710001 9743000 0 0 Deletion 32999 LOC_Os06g16810 polygalacturonase precursor, putative, expressed FN3028-S Chr6 9710001 9743000 0 0 Deletion 32999 LOC_Os06g16880 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr6 9817001 9851000 0 0 Deletion 33999 LOC_Os06g16950 expressed protein FN3028-S Chr6 9817001 9851000 0 0 Deletion 33999 LOC_Os06g16960 O-methyltransferase, putative, expressed FN3028-S Chr6 9817001 9851000 0 0 Deletion 33999 LOC_Os06g16970 hypothetical protein FN3028-S Chr6 9817001 9851000 0 0 Deletion 33999 LOC_Os06g16980 DNA topoisomerase I family protein, expressed FN3028-S Chr6 9817001 9851000 0 0 Deletion 33999 LOC_Os06g17240 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 10233001 10255000 0 0 Deletion 21999 LOC_Os07g17350 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 10233001 10255000 0 0 Deletion 21999 LOC_Os07g17360 transposon protein, putative, unclassified, expressed FN3028-S Chr7 10233001 10255000 0 0 Deletion 21999 LOC_Os07g17440 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr7 10292001 10372000 0 0 Deletion 79999 LOC_Os07g17450 expressed protein FN3028-S Chr7 10292001 10372000 0 0 Deletion 79999 LOC_Os07g17460 OsFBL36 - F-box domain and LRR containing protein, expressed FN3028-S Chr7 10292001 10372000 0 0 Deletion 79999 LOC_Os07g17470 hypothetical protein FN3028-S Chr7 10292001 10372000 0 0 Deletion 79999 LOC_Os07g17480 retrotransposon protein, putative, unclassified FN3028-S Chr7 10292001 10372000 0 0 Deletion 79999 LOC_Os07g17490 expressed protein FN3028-S Chr7 10292001 10372000 0 0 Deletion 79999 LOC_Os07g17500 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 10292001 10372000 0 0 Deletion 79999 LOC_Os07g17510 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 10292001 10372000 0 0 Deletion 79999 LOC_Os07g17520 expressed protein FN3028-S Chr7 10292001 10372000 0 0 Deletion 79999 LOC_Os07g17530 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 10292001 10372000 0 0 Deletion 79999 LOC_Os07g17540 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 10612001 10658000 0 0 Deletion 45999 LOC_Os07g17960 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 10612001 10658000 0 0 Deletion 45999 LOC_Os07g17970 AMP-binding domain containing protein, expressed FN3028-S Chr7 10612001 10658000 0 0 Deletion 45999 LOC_Os07g17980 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr7 10612001 10658000 0 0 Deletion 45999 LOC_Os07g17990 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 10612001 10658000 0 0 Deletion 45999 LOC_Os07g18000 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 10612001 10658000 0 0 Deletion 45999 LOC_Os07g18010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 10612001 10658000 0 0 Deletion 45999 LOC_Os07g18060 transposon protein, putative, unclassified, expressed FN3028-S Chr7 10685001 10710000 0 0 Deletion 24999 LOC_Os07g18070 expressed protein FN3028-S Chr7 10685001 10710000 0 0 Deletion 24999 LOC_Os07g18080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 10685001 10710000 0 0 Deletion 24999 LOC_Os07g18090 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 10685001 10710000 0 0 Deletion 24999 LOC_Os07g18360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 10875001 10900000 0 0 Deletion 24999 LOC_Os07g18370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 10875001 10900000 0 0 Deletion 24999 LOC_Os07g18380 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 10875001 10900000 0 0 Deletion 24999 LOC_Os07g18390 retrotransposon protein, putative, unclassified FN3028-S Chr7 10875001 10900000 0 0 Deletion 24999 LOC_Os07g18400 retrotransposon protein, putative, unclassified FN3028-S Chr7 10875001 10900000 0 0 Deletion 24999 LOC_Os07g18410 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 10875001 10900000 0 0 Deletion 24999 LOC_Os07g18500 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 10948001 11015000 0 0 Deletion 66999 LOC_Os07g18510 OsFBLD5 - F-box, LRR and FBD domain containing protein, expressed FN3028-S Chr7 10948001 11015000 0 0 Deletion 66999 LOC_Os07g18520 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 10948001 11015000 0 0 Deletion 66999 LOC_Os07g18530 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 10948001 11015000 0 0 Deletion 66999 LOC_Os07g18540 ribosomal RNA apurinic site specific lyase, putative, expressed FN3028-S Chr7 10948001 11015000 0 0 Deletion 66999 LOC_Os07g18550 hypothetical protein FN3028-S Chr7 10948001 11015000 0 0 Deletion 66999 LOC_Os07g18560 OsFBLD6 - F-box, LRR and FBD domain containing protein, expressed FN3028-S Chr7 10948001 11015000 0 0 Deletion 66999 LOC_Os07g18570 expressed protein FN3028-S Chr7 10948001 11015000 0 0 Deletion 66999 LOC_Os07g18580 expressed protein FN3028-S Chr7 10948001 11015000 0 0 Deletion 66999 LOC_Os07g18590 expressed protein FN3028-S Chr7 10948001 11015000 0 0 Deletion 66999 LOC_Os07g18600 OsFBL37 - F-box domain and LRR containing protein, expressed FN3028-S Chr7 10948001 11015000 0 0 Deletion 66999 LOC_Os07g18610 OsFBLD7 - F-box, LRR and FBD domain containing protein, expressed FN3028-S Chr7 10948001 11015000 0 0 Deletion 66999 LOC_Os07g18620 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr7 10948001 11015000 0 0 Deletion 66999 LOC_Os07g18630 expressed protein FN3028-S Chr7 10948001 11015000 0 0 Deletion 66999 LOC_Os07g18670 expressed protein FN3028-S Chr7 11032001 11078000 0 0 Deletion 45999 LOC_Os07g18680 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr7 11032001 11078000 0 0 Deletion 45999 LOC_Os07g18690 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 11032001 11078000 0 0 Deletion 45999 LOC_Os07g18700 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 11032001 11078000 0 0 Deletion 45999 LOC_Os07g18710 OsFBLD8 - F-box, LRR and FBD domain containing protein, expressed FN3028-S Chr7 11032001 11078000 0 0 Deletion 45999 LOC_Os07g18720 tetratricopeptide repeat containing protein, putative, expressed FN3028-S Chr7 11032001 11078000 0 0 Deletion 45999 LOC_Os07g19300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 11422001 11442000 0 0 Deletion 19999 LOC_Os07g19310 hypothetical protein FN3028-S Chr7 11422001 11442000 0 0 Deletion 19999 LOC_Os07g19320 stripe rust resistance protein Yr10, putative, expressed FN3028-S Chr7 11422001 11442000 0 0 Deletion 19999 LOC_Os07g19330 expressed protein FN3028-S Chr7 11422001 11442000 0 0 Deletion 19999 LOC_Os07g20670 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 11815066 11815067 0 0 Deletion 1 upstream_gene_variant HET FN3028-S Chr7 12529390 12539806 0 0 Inversion 10416 FN3028-S Chr7 12550001 12565000 0 0 Deletion 14999 LOC_Os07g22360 expressed protein FN3028-S Chr7 12550001 12565000 0 0 Deletion 14999 LOC_Os07g22370 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 12550001 12565000 0 0 Deletion 14999 LOC_Os07g22380 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 12550001 12565000 0 0 Deletion 14999 LOC_Os07g22640 lipid binding protein, putative, expressed FN3028-S Chr7 12651308 12651309 0 0 Deletion 1 INTERGENIC HET FN3028-S Chr7 12746001 12773000 0 0 Deletion 26999 LOC_Os07g22650 expressed protein FN3028-S Chr7 12746001 12773000 0 0 Deletion 26999 LOC_Os07g22660 expressed protein FN3028-S Chr7 12746001 12773000 0 0 Deletion 26999 LOC_Os07g22670 mTERF domain containing protein, expressed FN3028-S Chr7 12746001 12773000 0 0 Deletion 26999 LOC_Os07g22960 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 12936001 12960000 0 0 Deletion 23999 LOC_Os07g22970 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 12936001 12960000 0 0 Deletion 23999 LOC_Os07g23210 transposon protein, putative, unclassified, expressed FN3028-S Chr7 12977999 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3028-S Chr7 13082001 13120000 0 0 Deletion 37999 LOC_Os07g23220 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 13082001 13120000 0 0 Deletion 37999 LOC_Os07g23230 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 13082001 13120000 0 0 Deletion 37999 LOC_Os07g23244 ribosomal protein L23 family protein, putative, expressed FN3028-S Chr7 13082001 13120000 0 0 Deletion 37999 LOC_Os07g23260 expressed protein FN3028-S Chr7 13082001 13120000 0 0 Deletion 37999 LOC_Os07g23270 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 13082001 13120000 0 0 Deletion 37999 LOC_Os07g23520 expressed protein FN3028-S Chr7 13352001 13371000 0 0 Deletion 18999 LOC_Os07g23640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 13352001 13371000 0 0 Deletion 18999 LOC_Os07g23660 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 13352001 13371000 0 0 Deletion 18999 LOC_Os07g23670 expressed protein FN3028-S Chr7 13352001 13371000 0 0 Deletion 18999 LOC_Os07g23870 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 13479001 13569000 0 0 Deletion 89999 LOC_Os07g23880 glycosyl hydrolase, family 31, putative, expressed FN3028-S Chr7 13479001 13569000 0 0 Deletion 89999 LOC_Os07g23890 OsFBDUF36 - F-box and DUF domain containing protein, expressed FN3028-S Chr7 13479001 13569000 0 0 Deletion 89999 LOC_Os07g23900 OsFBX234 - F-box domain containing protein, expressed FN3028-S Chr7 13479001 13569000 0 0 Deletion 89999 LOC_Os07g23910 hypothetical protein FN3028-S Chr7 13479001 13569000 0 0 Deletion 89999 LOC_Os07g23920 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 13479001 13569000 0 0 Deletion 89999 LOC_Os07g23930 expressed protein FN3028-S Chr7 13479001 13569000 0 0 Deletion 89999 LOC_Os07g23944 glycosyl hydrolase, family 31, putative, expressed FN3028-S Chr7 13479001 13569000 0 0 Deletion 89999 LOC_Os07g23960 transferase family protein, putative, expressed FN3028-S Chr7 13479001 13569000 0 0 Deletion 89999 LOC_Os07g23970 zinc finger, C3HC4 type domain containing protein, expressed FN3028-S Chr7 13479001 13569000 0 0 Deletion 89999 LOC_Os07g23990 tetratricopeptide repeat domain containing protein, putative, expressed FN3028-S Chr7 13594001 13616000 0 0 Deletion 21999 LOC_Os07g23990 tetratricopeptide repeat domain containing protein, putative, expressed FN3028-S Chr7 13594001 13616000 0 0 Deletion 21999 LOC_Os07g24000 AWPM-19-like membrane family protein, putative, expressed FN3028-S Chr7 13594001 13616000 0 0 Deletion 21999 LOC_Os07g24010 hypothetical protein FN3028-S Chr7 13594001 13616000 0 0 Deletion 21999 LOC_Os07g24020 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 13827001 13863000 0 0 Deletion 35999 LOC_Os07g24320 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 13827001 13863000 0 0 Deletion 35999 LOC_Os07g24330 conserved hypothetical protein FN3028-S Chr7 13827001 13863000 0 0 Deletion 35999 LOC_Os07g24340 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr7 13827001 13863000 0 0 Deletion 35999 LOC_Os07g24350 homeobox domain containing protein, expressed FN3028-S Chr7 13827001 13863000 0 0 Deletion 35999 LOC_Os07g24750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 14072001 14109000 0 0 Deletion 36999 LOC_Os07g24760 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr7 14072001 14109000 0 0 Deletion 36999 LOC_Os07g24770 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 14072001 14109000 0 0 Deletion 36999 LOC_Os07g24780 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr7 14072001 14109000 0 0 Deletion 36999 LOC_Os07g24790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 14072001 14109000 0 0 Deletion 36999 LOC_Os07g24800 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 14072001 14109000 0 0 Deletion 36999 LOC_Os07g24810 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 14072001 14109000 0 0 Deletion 36999 LOC_Os07g24820 thionin-like peptide, putative, expressed FN3028-S Chr7 14072001 14109000 0 0 Deletion 36999 LOC_Os07g25080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 14314001 14336000 0 0 Deletion 21999 LOC_Os07g25090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 14314001 14336000 0 0 Deletion 21999 LOC_Os07g25100 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr7 14314001 14336000 0 0 Deletion 21999 LOC_Os07g25590 decarboxylase, putative, expressed FN3028-S Chr7 14931001 15003000 0 0 Deletion 71999 LOC_Os07g26030 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 14931001 15003000 0 0 Deletion 71999 LOC_Os07g26040 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 14931001 15003000 0 0 Deletion 71999 LOC_Os07g26050 hypothetical protein FN3028-S Chr7 14931001 15003000 0 0 Deletion 71999 LOC_Os07g26060 expressed protein FN3028-S Chr7 14931001 15003000 0 0 Deletion 71999 LOC_Os07g26070 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 14931001 15003000 0 0 Deletion 71999 LOC_Os07g26090 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 14931001 15003000 0 0 Deletion 71999 LOC_Os07g26100 expressed protein FN3028-S Chr7 14931001 15003000 0 0 Deletion 71999 LOC_Os07g26110 membrane associated DUF588 domain containing protein, putative, expressed FN3028-S Chr7 14931001 15003000 0 0 Deletion 71999 LOC_Os07g26120 transposon protein, putative, unclassified, expressed FN3028-S Chr7 15420001 15443000 0 0 Deletion 22999 LOC_Os07g26710 hypothetical protein FN3028-S Chr7 15420001 15443000 0 0 Deletion 22999 LOC_Os07g26720 OsRR7 type-A response regulator, expressed FN3028-S Chr7 15420001 15443000 0 0 Deletion 22999 LOC_Os07g26830 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 15527001 15549000 0 0 Deletion 21999 LOC_Os07g26840 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 15527001 15549000 0 0 Deletion 21999 LOC_Os07g26850 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 15527001 15549000 0 0 Deletion 21999 LOC_Os07g26860 expressed protein FN3028-S Chr7 15527001 15549000 0 0 Deletion 21999 LOC_Os07g27140 AT hook motif family protein, expressed FN3028-S Chr7 15733001 15766000 0 0 Deletion 32999 LOC_Os07g27150 trafficking protein particle complex subunit 4, putative, expressed FN3028-S Chr7 15733001 15766000 0 0 Deletion 32999 LOC_Os07g27170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 15733001 15766000 0 0 Deletion 32999 LOC_Os07g27200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 15797001 15822000 0 0 Deletion 24999 LOC_Os07g27210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 15797001 15822000 0 0 Deletion 24999 LOC_Os07g27220 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr7 15797001 15822000 0 0 Deletion 24999 LOC_Os07g27230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 15797001 15822000 0 0 Deletion 24999 LOC_Os07g27290 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 15862001 15882000 0 0 Deletion 19999 LOC_Os07g27300 RNA-binding protein Luc7-like, putative, expressed FN3028-S Chr7 15862001 15882000 0 0 Deletion 19999 LOC_Os07g27310 CRAL/TRIO domain containing protein, expressed FN3028-S Chr7 15862001 15882000 0 0 Deletion 19999 LOC_Os07g27410 expressed protein FN3028-S Chr7 15970001 16002000 0 0 Deletion 31999 LOC_Os07g27420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 15970001 16002000 0 0 Deletion 31999 LOC_Os07g27430 expressed protein FN3028-S Chr7 15970001 16002000 0 0 Deletion 31999 LOC_Os07g27450 expressed protein FN3028-S Chr7 15970001 16002000 0 0 Deletion 31999 LOC_Os07g27460 serine/threonine-protein kinase 19, putative, expressed FN3028-S Chr7 16361001 16437000 0 0 Deletion 75999 LOC_Os07g28060 ethylene receptor, putative FN3028-S Chr7 16361001 16437000 0 0 Deletion 75999 LOC_Os07g28070 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 16361001 16437000 0 0 Deletion 75999 LOC_Os07g28080 expressed protein FN3028-S Chr7 16361001 16437000 0 0 Deletion 75999 LOC_Os07g28090 ABC transporter, ATP-binding protein, putative, expressed FN3028-S Chr7 16361001 16437000 0 0 Deletion 75999 LOC_Os07g28100 hypothetical protein FN3028-S Chr7 16361001 16437000 0 0 Deletion 75999 LOC_Os07g28110 cytochrome P450, putative, expressed FN3028-S Chr7 16361001 16437000 0 0 Deletion 75999 LOC_Os07g28120 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 16361001 16437000 0 0 Deletion 75999 LOC_Os07g28130 transposon protein, putative, unclassified, expressed FN3028-S Chr7 16361001 16437000 0 0 Deletion 75999 LOC_Os07g28140 cytochrome P450, putative, expressed FN3028-S Chr7 16361001 16437000 0 0 Deletion 75999 LOC_Os07g28150 hAT dimerisation domain containing protein, putative, expressed FN3028-S Chr7 16361001 16437000 0 0 Deletion 75999 LOC_Os07g28370 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 16849951 16849962 0 0 Deletion 11 upstream_gene_variant HET FN3028-S Chr7 16987001 17009000 0 0 Deletion 21999 LOC_Os07g28970 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr7 16987001 17009000 0 0 Deletion 21999 LOC_Os07g28980 expressed protein FN3028-S Chr7 16987001 17009000 0 0 Deletion 21999 LOC_Os07g29460 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr7 17081620 17081623 0 0 Deletion 3 upstream_gene_variant HET FN3028-S Chr7 17100521 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3028-S Chr7 17292001 17315000 0 0 Deletion 22999 LOC_Os07g29470 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 17292001 17315000 0 0 Deletion 22999 LOC_Os07g29480 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 17292001 17315000 0 0 Deletion 22999 LOC_Os07g29560 expressed protein FN3028-S Chr7 17359001 17383000 0 0 Deletion 23999 LOC_Os07g29570 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 17359001 17383000 0 0 Deletion 23999 LOC_Os07g29580 expressed protein FN3028-S Chr7 17359001 17383000 0 0 Deletion 23999 LOC_Os07g29590 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 17359001 17383000 0 0 Deletion 23999 LOC_Os07g29794 calmodulin binding heat shock protein, putative, expressed FN3028-S Chr7 17520001 17572000 0 0 Deletion 51999 LOC_Os07g29810 disease resistant protein, identical, putative, expressed FN3028-S Chr7 17520001 17572000 0 0 Deletion 51999 LOC_Os07g29820 NBS-LRR disease resistance protein, putative, expressed FN3028-S Chr7 17520001 17572000 0 0 Deletion 51999 LOC_Os07g29830 ankyrin repeat domain containing protein, expressed FN3028-S Chr7 17520001 17572000 0 0 Deletion 51999 LOC_Os07g29850 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 17520001 17572000 0 0 Deletion 51999 LOC_Os07g29860 ankyrin repeat family protein, putative, expressed FN3028-S Chr7 17520001 17572000 0 0 Deletion 51999 LOC_Os07g30040 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 17702001 17731000 0 0 Deletion 28999 LOC_Os07g30050 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 17702001 17731000 0 0 Deletion 28999 LOC_Os07g30230 transposon protein, putative, unclassified, expressed FN3028-S Chr7 17857001 17888000 0 0 Deletion 30999 LOC_Os07g30240 mutS family domain IV containing protein, expressed FN3028-S Chr7 17857001 17888000 0 0 Deletion 30999 LOC_Os07g30250 RFT1, putative, expressed FN3028-S Chr7 17857001 17888000 0 0 Deletion 30999 LOC_Os07g30510 TKL_IRAK_DUF26-la.3 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3028-S Chr7 18068001 18136000 0 0 Deletion 67999 LOC_Os07g30560 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr7 18068001 18136000 0 0 Deletion 67999 LOC_Os07g30570 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr7 18068001 18136000 0 0 Deletion 67999 LOC_Os07g30580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 18068001 18136000 0 0 Deletion 67999 LOC_Os07g30590 LTPL55 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed FN3028-S Chr7 18068001 18136000 0 0 Deletion 67999 LOC_Os07g30600 male sterility protein, putative, expressed FN3028-S Chr7 18068001 18136000 0 0 Deletion 67999 LOC_Os07g30610 cytokinin-O-glucosyltransferase 2, putative, expressed FN3028-S Chr7 18068001 18136000 0 0 Deletion 67999 LOC_Os07g30620 cytokinin-O-glucosyltransferase 2, putative, expressed FN3028-S Chr7 18068001 18136000 0 0 Deletion 67999 LOC_Os07g30630 expressed protein FN3028-S Chr7 18068001 18136000 0 0 Deletion 67999 LOC_Os07g30640 ubiquitin fusion protein, putative, expressed FN3028-S Chr7 18068001 18136000 0 0 Deletion 67999 LOC_Os07g31230 hypothetical protein FN3028-S Chr7 18484001 18507000 0 0 Deletion 22999 LOC_Os07g31240 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 18484001 18507000 0 0 Deletion 22999 LOC_Os07g31244 expressed protein FN3028-S Chr7 18484001 18507000 0 0 Deletion 22999 LOC_Os07g31250 OsWAK69 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed FN3028-S Chr7 18484001 18507000 0 0 Deletion 22999 LOC_Os07g31260 expressed protein FN3028-S Chr7 18484001 18507000 0 0 Deletion 22999 LOC_Os07g31460 peptide-Nasparagine amidase, putative, expressed FN3028-S Chr7 18651001 18673000 0 0 Deletion 21999 LOC_Os07g31470 MYB family transcription factor, putative, expressed FN3028-S Chr7 18651001 18673000 0 0 Deletion 21999 LOC_Os07g31480 expressed protein FN3028-S Chr7 18651001 18673000 0 0 Deletion 21999 LOC_Os07g31660 expressed protein FN3028-S Chr7 18807001 18839000 0 0 Deletion 31999 LOC_Os07g31670 expressed protein FN3028-S Chr7 18807001 18839000 0 0 Deletion 31999 LOC_Os07g31680 OsFBL38 - F-box domain and LRR containing protein, expressed FN3028-S Chr7 18807001 18839000 0 0 Deletion 31999 LOC_Os07g31690 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 18807001 18839000 0 0 Deletion 31999 LOC_Os07g31700 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 18807001 18839000 0 0 Deletion 31999 LOC_Os07g31710 expressed protein FN3028-S Chr7 18807001 18839000 0 0 Deletion 31999 LOC_Os07g32190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 19136001 19150000 0 0 Deletion 13999 LOC_Os07g32200 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr7 19136001 19150000 0 0 Deletion 13999 LOC_Os07g32210 precollagen-D, putative, expressed FN3028-S Chr7 19136001 19150000 0 0 Deletion 13999 LOC_Os07g32220 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 19136001 19150000 0 0 Deletion 13999 LOC_Os07g32430 pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16, putative, expressed FN3028-S Chr7 19293001 19314000 0 0 Deletion 20999 LOC_Os07g32440 expressed protein FN3028-S Chr7 19293001 19314000 0 0 Deletion 20999 LOC_Os07g32450 protein kinase PKN/PRK1, effector, putative, expressed FN3028-S Chr7 19293001 19314000 0 0 Deletion 20999 LOC_Os07g32460 src homology-3 domain protein 3, putative, expressed FN3028-S Chr7 19293001 19314000 0 0 Deletion 20999 LOC_Os07g32680 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 19514001 19534000 0 0 Deletion 19999 LOC_Os07g32690 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 19514001 19534000 0 0 Deletion 19999 LOC_Os07g32700 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 19514001 19534000 0 0 Deletion 19999 LOC_Os07g32710 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 19514001 19534000 0 0 Deletion 19999 LOC_Os07g34660 expressed protein FN3028-S Chr7 20781001 20802000 0 0 Deletion 20999 LOC_Os07g34670 peroxidase precursor, putative, expressed FN3028-S Chr7 20781001 20802000 0 0 Deletion 20999 LOC_Os07g34680 expressed protein FN3028-S Chr7 20781001 20802000 0 0 Deletion 20999 LOC_Os07g34690 expressed protein FN3028-S Chr7 20781001 20802000 0 0 Deletion 20999 LOC_Os07g34700 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 20781001 20802000 0 0 Deletion 20999 LOC_Os07g34750 expressed protein FN3028-S Chr7 20822001 20842000 0 0 Deletion 19999 LOC_Os07g34760 expressed protein FN3028-S Chr7 20822001 20842000 0 0 Deletion 19999 LOC_Os07g34770 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 20822001 20842000 0 0 Deletion 19999 LOC_Os07g35350 glucan endo-1,3-beta-glucosidase precursor, putative, expressed FN3028-S Chr7 21151001 21181000 0 0 Deletion 29999 LOC_Os07g35360 expressed protein FN3028-S Chr7 21151001 21181000 0 0 Deletion 29999 LOC_Os07g35370 TKL_IRAK_DUF26-lc.15 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3028-S Chr7 21151001 21181000 0 0 Deletion 29999 LOC_Os07g35380 TKL_IRAK_DUF26-lc.16 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3028-S Chr7 21151001 21181000 0 0 Deletion 29999 LOC_Os07g35390 TKL_IRAK_DUF26-lc.17 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3028-S Chr7 21151001 21181000 0 0 Deletion 29999 LOC_Os07g35400 expressed protein FN3028-S Chr7 21151001 21181000 0 0 Deletion 29999 LOC_Os07g35410 TKL_IRAK_DUF26-lc.18 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3028-S Chr7 21151001 21181000 0 0 Deletion 29999 LOC_Os07g35500 mucin-associated surface protein, putative, expressed FN3028-S Chr7 21232001 21247000 0 0 Deletion 14999 LOC_Os07g35510 glucan endo-1,3-beta-glucosidase precursor, putative, expressed FN3028-S Chr7 21232001 21247000 0 0 Deletion 14999 LOC_Os07g35520 glucan endo-1,3-beta-glucosidase precursor, putative, expressed FN3028-S Chr7 21232001 21247000 0 0 Deletion 14999 LOC_Os07g36470 vacuolar ATP synthase subunit H, putative, expressed FN3028-S Chr7 21821001 21836000 0 0 Deletion 14999 LOC_Os07g36490 RNA recognition motif containing protein, putative, expressed FN3028-S Chr7 21821001 21836000 0 0 Deletion 14999 LOC_Os07g36500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed FN3028-S Chr7 21821001 21836000 0 0 Deletion 14999 LOC_Os07g36510 expressed protein FN3028-S Chr7 21821001 21836000 0 0 Deletion 14999 LOC_Os07g36750 CSLF3 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase, expressed FN3028-S Chr7 21822100 22022722 0 0 Inversion 200622 LOC_Os07g36470 vacuolar ATP synthase subunit H, putative, expressed FN3028-S Chr7 21834591 22023019 0 0 Inversion 188428 FN3028-S Chr7 22015001 22042000 0 0 Deletion 26999 LOC_Os07g36760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 22015001 22042000 0 0 Deletion 26999 LOC_Os07g36770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 22015001 22042000 0 0 Deletion 26999 LOC_Os07g36780 S-domain receptor-like protein kinase, putative, expressed FN3028-S Chr7 22015001 22042000 0 0 Deletion 26999 LOC_Os07g37200 transposon protein, putative, unclassified, expressed FN3028-S Chr7 22241223 22241223 0 0 Insertion 2 INTERGENIC HET FN3028-S Chr7 22291001 22316000 0 0 Deletion 24999 LOC_Os07g37210 MYB family transcription factor, putative, expressed FN3028-S Chr7 22291001 22316000 0 0 Deletion 24999 LOC_Os07g37220 inositol-1-monophosphatase, putative, expressed FN3028-S Chr7 22291001 22316000 0 0 Deletion 24999 LOC_Os07g37230 inositol-1-monophosphatase, putative, expressed FN3028-S Chr7 22291001 22316000 0 0 Deletion 24999 LOC_Os07g37820 expressed protein FN3028-S Chr7 22687001 22766000 0 0 Deletion 78999 LOC_Os07g37830 peptidyl-prolyl cis-trans isomerase CYP37, chloroplast precursor, putative, expressed FN3028-S Chr7 22687001 22766000 0 0 Deletion 78999 LOC_Os07g37840 lipase, putative, expressed FN3028-S Chr7 22687001 22766000 0 0 Deletion 78999 LOC_Os07g37850 expressed protein FN3028-S Chr7 22687001 22766000 0 0 Deletion 78999 LOC_Os07g37860 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 22687001 22766000 0 0 Deletion 78999 LOC_Os07g37870 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 22687001 22766000 0 0 Deletion 78999 LOC_Os07g37880 hypothetical protein FN3028-S Chr7 22687001 22766000 0 0 Deletion 78999 LOC_Os07g37890 protein phosphatase 2C, putative, expressed FN3028-S Chr7 22687001 22766000 0 0 Deletion 78999 LOC_Os07g37900 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 22687001 22766000 0 0 Deletion 78999 LOC_Os07g37910 expressed protein FN3028-S Chr7 22687001 22766000 0 0 Deletion 78999 LOC_Os07g37920 no apical meristem protein, putative, expressed FN3028-S Chr7 22687001 22766000 0 0 Deletion 78999 LOC_Os07g37930 expressed protein FN3028-S Chr7 23468619 23468619 0 0 Insertion 1 upstream_gene_variant HET FN3028-S Chr7 23631001 23663000 0 0 Deletion 31999 LOC_Os07g39460 transposon protein, putative, unclassified, expressed FN3028-S Chr7 23631001 23663000 0 0 Deletion 31999 LOC_Os07g39470 gibberellin response modulator protein, putative, expressed FN3028-S Chr7 23631001 23663000 0 0 Deletion 31999 LOC_Os07g39480 WRKY87, expressed FN3028-S Chr7 23631001 23663000 0 0 Deletion 31999 LOC_Os07g39730 ZCW7, putative, expressed FN3028-S Chr7 23809001 23849000 0 0 Deletion 39999 LOC_Os07g39740 GDSL-like lipase/acylhydrolase, putative, expressed FN3028-S Chr7 23809001 23849000 0 0 Deletion 39999 LOC_Os07g39750 GDSL-like lipase/acylhydrolase, putative, expressed FN3028-S Chr7 23809001 23849000 0 0 Deletion 39999 LOC_Os07g39760 expressed protein FN3028-S Chr7 23809001 23849000 0 0 Deletion 39999 LOC_Os07g39770 expressed protein FN3028-S Chr7 23809001 23849000 0 0 Deletion 39999 LOC_Os07g39780 SUMO-activating enzyme subunit 2, putative, expressed FN3028-S Chr7 23809001 23849000 0 0 Deletion 39999 LOC_Os07g39790 expressed protein FN3028-S Chr7 23809001 23849000 0 0 Deletion 39999 LOC_Os07g39800 transcription repressor HOTR, putative, expressed FN3028-S Chr7 23809001 23849000 0 0 Deletion 39999 LOC_Os07g39950 mitotic checkpoint protein, putative, expressed FN3028-S Chr7 23962001 23988000 0 0 Deletion 25999 LOC_Os07g39960 ZOS7-07 - C2H2 zinc finger protein, expressed FN3028-S Chr7 23962001 23988000 0 0 Deletion 25999 LOC_Os07g39970 ZOS7-08 - C2H2 zinc finger protein, expressed FN3028-S Chr7 23962001 23988000 0 0 Deletion 25999 LOC_Os07g39980 GA22009-PA, putative, expressed FN3028-S Chr7 23962001 23988000 0 0 Deletion 25999 LOC_Os07g40050 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 25402001 25419000 0 0 Deletion 16999 LOC_Os07g42440 hydroxyacid oxidase 1, putative, expressed FN3028-S Chr7 25402001 25419000 0 0 Deletion 16999 LOC_Os07g42450 ribosomal protein S2, putative, expressed FN3028-S Chr7 25402001 25419000 0 0 Deletion 16999 LOC_Os07g42460 transposon protein, putative, unclassified, expressed FN3028-S Chr7 25402001 25419000 0 0 Deletion 16999 LOC_Os07g44210 SNF2 family N-terminal domain containing protein, expressed FN3028-S Chr7 26420001 26449000 0 0 Deletion 28999 LOC_Os07g44220 expressed protein FN3028-S Chr7 26420001 26449000 0 0 Deletion 28999 LOC_Os07g44230 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative, expressed FN3028-S Chr7 26420001 26449000 0 0 Deletion 28999 LOC_Os07g44240 transposon protein, putative, unclassified, expressed FN3028-S Chr7 26420001 26449000 0 0 Deletion 28999 LOC_Os07g44250 dirigent, putative, expressed FN3028-S Chr7 26420001 26449000 0 0 Deletion 28999 LOC_Os07g44330 kinase, putative, expressed FN3028-S Chr7 26485001 26509000 0 0 Deletion 23999 LOC_Os07g44340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 26485001 26509000 0 0 Deletion 23999 LOC_Os07g44350 sec20 domain containing protein, expressed FN3028-S Chr7 26485001 26509000 0 0 Deletion 23999 LOC_Os07g44360 serine/threonine-protein kinase Haspin, putative, expressed FN3028-S Chr7 26485001 26509000 0 0 Deletion 23999 LOC_Os07g45064 Phosphatidylinositol kinase and FAT containing domain protein, putative, expressed FN3028-S Chr7 26890001 26912000 0 0 Deletion 21999 LOC_Os07g45070 FAT domain-containing protein, putative, expressed FN3028-S Chr7 26890001 26912000 0 0 Deletion 21999 LOC_Os07g45074 FAT domain-containing protein, putative, expressed FN3028-S Chr7 26890001 26912000 0 0 Deletion 21999 LOC_Os07g45080 expressed protein FN3028-S Chr7 26890001 26912000 0 0 Deletion 21999 LOC_Os07g45400 expressed protein FN3028-S Chr7 27077001 27092000 0 0 Deletion 14999 LOC_Os07g45410 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr7 27077001 27092000 0 0 Deletion 14999 LOC_Os07g45550 expressed protein FN3028-S Chr7 27173001 27210000 0 0 Deletion 36999 LOC_Os07g45560 expressed protein FN3028-S Chr7 27173001 27210000 0 0 Deletion 36999 LOC_Os07g45570 expressed protein FN3028-S Chr7 27173001 27210000 0 0 Deletion 36999 LOC_Os07g45580 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 27173001 27210000 0 0 Deletion 36999 LOC_Os07g45590 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 27173001 27210000 0 0 Deletion 36999 LOC_Os07g45870 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 27367001 27444000 0 0 Deletion 76999 LOC_Os07g45880 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 27367001 27444000 0 0 Deletion 76999 LOC_Os07g45890 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 27367001 27444000 0 0 Deletion 76999 LOC_Os07g45900 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 27367001 27444000 0 0 Deletion 76999 LOC_Os07g45910 hypothetical protein FN3028-S Chr7 27367001 27444000 0 0 Deletion 76999 LOC_Os07g45920 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 27367001 27444000 0 0 Deletion 76999 LOC_Os07g45930 transposon protein, putative, unclassified FN3028-S Chr7 27367001 27444000 0 0 Deletion 76999 LOC_Os07g45940 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 27367001 27444000 0 0 Deletion 76999 LOC_Os07g45950 expressed protein FN3028-S Chr7 27367001 27444000 0 0 Deletion 76999 LOC_Os07g45960 expressed protein FN3028-S Chr7 27367001 27444000 0 0 Deletion 76999 LOC_Os07g45970 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 27367001 27444000 0 0 Deletion 76999 LOC_Os07g45980 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 27367001 27444000 0 0 Deletion 76999 LOC_Os07g45990 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 27510001 27527000 0 0 Deletion 16999 LOC_Os07g46100 expressed protein FN3028-S Chr7 27510001 27527000 0 0 Deletion 16999 LOC_Os07g46110 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 27510001 27527000 0 0 Deletion 16999 LOC_Os07g46120 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 27510001 27527000 0 0 Deletion 16999 LOC_Os07g47960 basic helix-loop-helix domain containing protein, expressed FN3028-S Chr7 28649001 28671000 0 0 Deletion 21999 LOC_Os07g47970 expressed protein FN3028-S Chr7 28649001 28671000 0 0 Deletion 21999 LOC_Os07g47990 peroxidase precursor, putative, expressed FN3028-S Chr7 28649001 28671000 0 0 Deletion 21999 LOC_Os07g48000 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 28649001 28671000 0 0 Deletion 21999 LOC_Os07g48010 peroxidase precursor, putative, expressed FN3028-S Chr7 28649001 28671000 0 0 Deletion 21999 LOC_Os07g48229 vacuolar-sorting receptor precursor, putative, expressed FN3028-S Chr7 28803001 28841000 0 0 Deletion 37999 LOC_Os07g48244 ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed FN3028-S Chr7 28803001 28841000 0 0 Deletion 37999 LOC_Os07g48260 WRKY47, expressed FN3028-S Chr7 28803001 28841000 0 0 Deletion 37999 LOC_Os07g48270 helicase conserved C-terminal domain containing protein, expressed FN3028-S Chr7 28803001 28841000 0 0 Deletion 37999 LOC_Os08g01900 armadillo/beta-catenin repeat family protein, putative, expressed FN3028-S Chr7 3250001 3290000 0 0 Deletion 39999 LOC_Os07g06680 fasciclin domain containing protein, expressed FN3028-S Chr7 3250001 3290000 0 0 Deletion 39999 LOC_Os07g06700 expressed protein FN3028-S Chr7 3250001 3290000 0 0 Deletion 39999 LOC_Os07g06710 tetratricopeptide repeat, putative, expressed FN3028-S Chr7 3250001 3290000 0 0 Deletion 39999 LOC_Os07g06720 expressed protein FN3028-S Chr7 3250001 3290000 0 0 Deletion 39999 LOC_Os07g06730 OsFBX216 - F-box domain containing protein, expressed FN3028-S Chr7 3250001 3290000 0 0 Deletion 39999 LOC_Os07g06740 CAMK_CAMK_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN3028-S Chr7 3250001 3290000 0 0 Deletion 39999 LOC_Os07g06910 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr7 3376001 3448000 0 0 Deletion 71999 LOC_Os07g06920 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr7 3376001 3448000 0 0 Deletion 71999 LOC_Os07g06930 hypothetical protein FN3028-S Chr7 3376001 3448000 0 0 Deletion 71999 LOC_Os07g06940 valyl-tRNA synthetase, putative, expressed FN3028-S Chr7 3376001 3448000 0 0 Deletion 71999 LOC_Os07g06950 ubiquitin carboxyl-terminal hydrolase, putative, expressed FN3028-S Chr7 3376001 3448000 0 0 Deletion 71999 LOC_Os07g06960 pentatricopeptide, putative, expressed FN3028-S Chr7 3376001 3448000 0 0 Deletion 71999 LOC_Os07g06970 HEN1, putative, expressed FN3028-S Chr7 3376001 3448000 0 0 Deletion 71999 LOC_Os07g06980 histone deacetylase, putative, expressed FN3028-S Chr7 3376001 3448000 0 0 Deletion 71999 LOC_Os07g06990 expressed protein FN3028-S Chr7 3376001 3448000 0 0 Deletion 71999 LOC_Os07g07000 syntaxin, putative, expressed FN3028-S Chr7 3376001 3448000 0 0 Deletion 71999 LOC_Os07g07310 polynucleotide phosphorylase, putative, expressed FN3028-S Chr7 3647001 3667000 0 0 Deletion 19999 LOC_Os07g07320 glutathione S-transferase, putative, expressed FN3028-S Chr7 3647001 3667000 0 0 Deletion 19999 LOC_Os07g08300 major facilitator superfamily antiporter, putative, expressed FN3028-S Chr7 3933245 3933245 0 0 Insertion 83 frameshift_variant&stop_gained HET LOC_Os07g07830 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 4245128 4245128 0 0 Insertion 108 intron_variant HET FN3028-S Chr7 4248001 4275000 0 0 Deletion 26999 LOC_Os07g08320 RNA recognition motif containing protein, expressed FN3028-S Chr7 4248001 4275000 0 0 Deletion 26999 LOC_Os07g08330 ribosomal protein L4, putative, expressed FN3028-S Chr7 4248001 4275000 0 0 Deletion 26999 LOC_Os07g08340 pyruvate kinase, putative, expressed FN3028-S Chr7 4248001 4275000 0 0 Deletion 26999 LOC_Os07g08490 expressed protein FN3028-S Chr7 4371001 4397000 0 0 Deletion 25999 LOC_Os07g08500 C-5 cytosine-specific DNA methylase, putative, expressed FN3028-S Chr7 4371001 4397000 0 0 Deletion 25999 LOC_Os07g08510 expressed protein FN3028-S Chr7 4371001 4397000 0 0 Deletion 25999 LOC_Os07g08669 expressed protein FN3028-S Chr7 4465001 4478000 0 0 Deletion 12999 LOC_Os07g08680 expressed protein FN3028-S Chr7 4465001 4478000 0 0 Deletion 12999 LOC_Os07g08690 hypothetical protein FN3028-S Chr7 4465001 4478000 0 0 Deletion 12999 LOC_Os07g08700 expressed protein FN3028-S Chr7 4465001 4478000 0 0 Deletion 12999 LOC_Os07g08950 FAD-linked oxidoreductase protein, putative, expressed FN3028-S Chr7 4859001 4887000 0 0 Deletion 27999 LOC_Os07g09290 hypothetical protein FN3028-S Chr7 4859001 4887000 0 0 Deletion 27999 LOC_Os07g09310 thioredoxin, putative, expressed FN3028-S Chr7 4859001 4887000 0 0 Deletion 27999 LOC_Os07g09320 FHA domain containing protein, putative, expressed FN3028-S Chr7 4859001 4887000 0 0 Deletion 27999 LOC_Os07g09510 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 5020001 5071000 0 0 Deletion 50999 LOC_Os07g09520 expressed protein FN3028-S Chr7 5020001 5071000 0 0 Deletion 50999 LOC_Os07g09530 ankyrin repeat family protein, putative, expressed FN3028-S Chr7 5020001 5071000 0 0 Deletion 50999 LOC_Os07g09540 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr7 5020001 5071000 0 0 Deletion 50999 LOC_Os07g09560 ankyrin repeat family protein, putative, expressed FN3028-S Chr7 5020001 5071000 0 0 Deletion 50999 LOC_Os07g09570 hypothetical protein FN3028-S Chr7 5020001 5071000 0 0 Deletion 50999 LOC_Os07g09740 no apical meristem protein, expressed FN3028-S Chr7 5190001 5207000 0 0 Deletion 16999 LOC_Os07g09750 expressed protein FN3028-S Chr7 5190001 5207000 0 0 Deletion 16999 LOC_Os07g09760 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 5190001 5207000 0 0 Deletion 16999 LOC_Os07g09770 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 5190001 5207000 0 0 Deletion 16999 LOC_Os07g10370 expressed protein FN3028-S Chr7 5565001 5585000 0 0 Deletion 19999 LOC_Os07g10380 expressed protein FN3028-S Chr7 5565001 5585000 0 0 Deletion 19999 LOC_Os07g10390 cleavage and polyadenylation specificity factor, putative, expressed FN3028-S Chr7 5565001 5585000 0 0 Deletion 19999 LOC_Os07g10400 pentatricopeptide, putative, expressed FN3028-S Chr7 5565001 5585000 0 0 Deletion 19999 LOC_Os07g10560 expressed protein FN3028-S Chr7 5723001 5747000 0 0 Deletion 23999 LOC_Os07g10570 PROLM25 - Prolamin precursor, expressed FN3028-S Chr7 5723001 5747000 0 0 Deletion 23999 LOC_Os07g10580 PROLM26 - Prolamin precursor, expressed FN3028-S Chr7 5723001 5747000 0 0 Deletion 23999 LOC_Os07g10740 polygalacturonase, putative, expressed FN3028-S Chr7 5826001 5855000 0 0 Deletion 28999 LOC_Os07g10750 transposon protein, putative, Pong sub-class, expressed FN3028-S Chr7 5826001 5855000 0 0 Deletion 28999 LOC_Os07g10760 expressed protein FN3028-S Chr7 5826001 5855000 0 0 Deletion 28999 LOC_Os07g10770 CESA8 - cellulose synthase, expressed FN3028-S Chr7 5826001 5855000 0 0 Deletion 28999 LOC_Os07g11180 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 6463001 6534000 0 0 Deletion 70999 LOC_Os07g11690 hypothetical protein FN3028-S Chr7 6463001 6534000 0 0 Deletion 70999 LOC_Os07g11700 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 6463001 6534000 0 0 Deletion 70999 LOC_Os07g11710 expressed protein FN3028-S Chr7 6463001 6534000 0 0 Deletion 70999 LOC_Os07g11720 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 6463001 6534000 0 0 Deletion 70999 LOC_Os07g11739 cytochrome P450, putative, expressed FN3028-S Chr7 6463001 6534000 0 0 Deletion 70999 LOC_Os07g11770 expressed protein FN3028-S Chr7 6463001 6534000 0 0 Deletion 70999 LOC_Os07g11780 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr7 6463001 6534000 0 0 Deletion 70999 LOC_Os07g11790 terpene synthase, putative, expressed FN3028-S Chr7 6463001 6534000 0 0 Deletion 70999 LOC_Os07g11800 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 6463001 6534000 0 0 Deletion 70999 LOC_Os07g11810 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr7 6770001 6821000 0 0 Deletion 50999 LOC_Os07g12130 MYB family transcription factor, putative, expressed FN3028-S Chr7 6770001 6821000 0 0 Deletion 50999 LOC_Os07g12140 PPR repeat domain containing protein, putative, expressed FN3028-S Chr7 6770001 6821000 0 0 Deletion 50999 LOC_Os07g12150 acyl carrier protein, putative, expressed FN3028-S Chr7 6770001 6821000 0 0 Deletion 50999 LOC_Os07g12160 KHG/KDPG aldolase, putative, expressed FN3028-S Chr7 6770001 6821000 0 0 Deletion 50999 LOC_Os07g12170 ADP-ribosylation factor, putative, expressed FN3028-S Chr7 6770001 6821000 0 0 Deletion 50999 LOC_Os07g12180 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 6770001 6821000 0 0 Deletion 50999 LOC_Os07g12190 retrotransposon protein, putative, unclassified FN3028-S Chr7 6770001 6821000 0 0 Deletion 50999 LOC_Os07g12350 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr7 6983001 7008000 0 0 Deletion 24999 LOC_Os07g12740 retrotransposon protein, putative, unclassified FN3028-S Chr7 7013246 7013256 0 0 Deletion 10 downstream_gene_variant HET FN3028-S Chr7 705001 721000 0 0 Deletion 15999 LOC_Os07g02230 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 705001 721000 0 0 Deletion 15999 LOC_Os07g02240 transcription factor X1, putative, expressed FN3028-S Chr7 705001 721000 0 0 Deletion 15999 LOC_Os07g02310 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 7281001 7304000 0 0 Deletion 22999 LOC_Os07g12750 retrotransposon protein, putative, unclassified FN3028-S Chr7 7281001 7304000 0 0 Deletion 22999 LOC_Os07g12760 hypothetical protein FN3028-S Chr7 7281001 7304000 0 0 Deletion 22999 LOC_Os07g12940 expressed protein FN3028-S Chr7 7426001 7448000 0 0 Deletion 21999 LOC_Os07g12950 transposon protein, putative, unclassified, expressed FN3028-S Chr7 7426001 7448000 0 0 Deletion 21999 LOC_Os07g12970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 7426001 7448000 0 0 Deletion 21999 LOC_Os07g12980 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 7426001 7448000 0 0 Deletion 21999 LOC_Os07g13040 expressed protein FN3028-S Chr7 7476001 7536000 0 0 Deletion 59999 LOC_Os07g13050 hypothetical protein FN3028-S Chr7 7476001 7536000 0 0 Deletion 59999 LOC_Os07g13060 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 7476001 7536000 0 0 Deletion 59999 LOC_Os07g13070 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr7 7476001 7536000 0 0 Deletion 59999 LOC_Os07g13080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 7476001 7536000 0 0 Deletion 59999 LOC_Os07g13090 expressed protein FN3028-S Chr7 7476001 7536000 0 0 Deletion 59999 LOC_Os07g13100 DNA binding protein, putative, expressed FN3028-S Chr7 7476001 7536000 0 0 Deletion 59999 LOC_Os07g13120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 7476001 7536000 0 0 Deletion 59999 LOC_Os07g13130 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 7476001 7536000 0 0 Deletion 59999 LOC_Os07g13140 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 7476001 7536000 0 0 Deletion 59999 LOC_Os07g13260 dof zinc finger domain containing protein, putative, expressed FN3028-S Chr7 7601001 7651000 0 0 Deletion 49999 LOC_Os07g13270 SNF7 domain containing protein, putative, expressed FN3028-S Chr7 7601001 7651000 0 0 Deletion 49999 LOC_Os07g13280 RNA recognition motif containing protein, putative, expressed FN3028-S Chr7 7601001 7651000 0 0 Deletion 49999 LOC_Os07g13310 RALFL10 - Rapid ALkalinization Factor RALF family protein precursor, putative, expressed FN3028-S Chr7 7601001 7651000 0 0 Deletion 49999 LOC_Os07g13319 hypothetical protein FN3028-S Chr7 7601001 7651000 0 0 Deletion 49999 LOC_Os07g13330 expressed protein FN3028-S Chr7 7601001 7651000 0 0 Deletion 49999 LOC_Os07g13340 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 772001 794000 0 0 Deletion 21999 LOC_Os07g02330 protein phosphatase 2C, putative, expressed FN3028-S Chr7 772001 794000 0 0 Deletion 21999 LOC_Os07g02570 NB-ARC domain containing protein, expressed FN3028-S Chr7 7783001 7822000 0 0 Deletion 38999 LOC_Os07g13580 glucan endo-1,3-beta-glucosidase precursor, putative, expressed FN3028-S Chr7 7783001 7822000 0 0 Deletion 38999 LOC_Os07g13590 expressed protein FN3028-S Chr7 7783001 7822000 0 0 Deletion 38999 LOC_Os07g13600 expressed protein FN3028-S Chr7 7783001 7822000 0 0 Deletion 38999 LOC_Os07g13610 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr7 7783001 7822000 0 0 Deletion 38999 LOC_Os07g13634 cytokinin-N-glucosyltransferase 1, putative, expressed FN3028-S Chr7 7783001 7822000 0 0 Deletion 38999 LOC_Os07g13680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 7849001 7927000 0 0 Deletion 77999 LOC_Os07g13690 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 7849001 7927000 0 0 Deletion 77999 LOC_Os07g13700 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 7849001 7927000 0 0 Deletion 77999 LOC_Os07g13710 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 7849001 7927000 0 0 Deletion 77999 LOC_Os07g13719 hypothetical protein FN3028-S Chr7 7849001 7927000 0 0 Deletion 77999 LOC_Os07g13728 hypothetical protein FN3028-S Chr7 7849001 7927000 0 0 Deletion 77999 LOC_Os07g13740 retrotransposon protein, putative, unclassified FN3028-S Chr7 7849001 7927000 0 0 Deletion 77999 LOC_Os07g13760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 7849001 7927000 0 0 Deletion 77999 LOC_Os07g13770 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed FN3028-S Chr7 7849001 7927000 0 0 Deletion 77999 LOC_Os07g13780 cytokinin-O-glucosyltransferase 2, putative, expressed FN3028-S Chr7 7849001 7927000 0 0 Deletion 77999 LOC_Os07g13790 hypothetical protein FN3028-S Chr7 7849001 7927000 0 0 Deletion 77999 LOC_Os07g13800 cytokinin-N-glucosyltransferase, putative, expressed FN3028-S Chr7 7849001 7927000 0 0 Deletion 77999 LOC_Os07g13810 cytokinin-N-glucosyltransferase 1, putative, expressed FN3028-S Chr7 7849001 7927000 0 0 Deletion 77999 LOC_Os07g13830 OsFBX228 - F-box domain containing protein, expressed FN3028-S Chr7 7849001 7927000 0 0 Deletion 77999 LOC_Os07g13834 expressed protein FN3028-S Chr7 7849001 7927000 0 0 Deletion 77999 LOC_Os07g13840 expressed protein FN3028-S Chr7 7849001 7927000 0 0 Deletion 77999 LOC_Os07g13850 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr7 7849001 7927000 0 0 Deletion 77999 LOC_Os07g14190 retrotransposon protein, putative, unclassified FN3028-S Chr7 8172001 8191000 0 0 Deletion 18999 LOC_Os07g14330 expressed protein FN3028-S Chr7 8172001 8191000 0 0 Deletion 18999 LOC_Os07g14710 transposon protein, putative, Mariner sub-class, expressed FN3028-S Chr7 8384001 8406000 0 0 Deletion 21999 LOC_Os07g14720 expressed protein FN3028-S Chr7 8384001 8406000 0 0 Deletion 21999 LOC_Os07g14970 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 923001 951000 0 0 Deletion 27999 LOC_Os07g02580 ubiquinone oxidoreductase, putative, expressed FN3028-S Chr7 923001 951000 0 0 Deletion 27999 LOC_Os07g02590 expressed protein FN3028-S Chr7 923001 951000 0 0 Deletion 27999 LOC_Os07g02600 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr7 923001 951000 0 0 Deletion 27999 LOC_Os07g02610 expressed protein FN3028-S Chr7 923001 951000 0 0 Deletion 27999 LOC_Os07g02620 NB-ARC domain containing protein, expressed FN3028-S Chr7 923001 951000 0 0 Deletion 27999 LOC_Os07g02624 expressed protein FN3028-S Chr7 923001 951000 0 0 Deletion 27999 LOC_Os07g02630 expressed protein FN3028-S Chr7 923001 951000 0 0 Deletion 27999 LOC_Os07g06670 OsFBL35 - F-box domain and LRR containing protein, expressed FN3028-S Chr7 9369001 9393000 0 0 Deletion 23999 LOC_Os07g16080 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 9369001 9393000 0 0 Deletion 23999 LOC_Os07g16090 retrotransposon protein, putative, unclassified FN3028-S Chr7 9369001 9393000 0 0 Deletion 23999 LOC_Os07g16100 retrotransposon protein, putative, unclassified FN3028-S Chr7 9369001 9393000 0 0 Deletion 23999 LOC_Os07g16110 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr7 9369001 9393000 0 0 Deletion 23999 LOC_Os07g16120 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr7 9369001 9393000 0 0 Deletion 23999 LOC_Os07g16410 transposon protein, putative, unclassified FN3028-S Chr7 9609001 9621000 0 0 Deletion 11999 LOC_Os07g16420 OsFBX232 - F-box domain containing protein, expressed FN3028-S Chr7 9609001 9621000 0 0 Deletion 11999 LOC_Os07g16480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 9655001 9680000 0 0 Deletion 24999 LOC_Os07g16490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 9655001 9680000 0 0 Deletion 24999 LOC_Os07g16500 retrotransposon, putative, centromere-specific FN3028-S Chr7 9655001 9680000 0 0 Deletion 24999 LOC_Os07g16510 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr7 9655001 9680000 0 0 Deletion 24999 LOC_Os07g16610 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr7 9742001 9762000 0 0 Deletion 19999 LOC_Os07g16620 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr7 9742001 9762000 0 0 Deletion 19999 LOC_Os07g16630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr7 9742001 9762000 0 0 Deletion 19999 LOC_Os07g17340 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr8 10034548 Chr1 17844084 0 Translocation 0 FN3028-S Chr8 10195001 10212000 0 0 Deletion 16999 LOC_Os08g16680 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr8 10195001 10212000 0 0 Deletion 16999 LOC_Os08g16690 expressed protein FN3028-S Chr8 10195001 10212000 0 0 Deletion 16999 LOC_Os08g16970 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 10387001 10462000 0 0 Deletion 74999 LOC_Os08g16980 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 10387001 10462000 0 0 Deletion 74999 LOC_Os08g16990 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr8 10387001 10462000 0 0 Deletion 74999 LOC_Os08g17000 expressed protein FN3028-S Chr8 10387001 10462000 0 0 Deletion 74999 LOC_Os08g17010 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 10387001 10462000 0 0 Deletion 74999 LOC_Os08g17020 expressed protein FN3028-S Chr8 10387001 10462000 0 0 Deletion 74999 LOC_Os08g17030 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr8 10387001 10462000 0 0 Deletion 74999 LOC_Os08g17040 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 10387001 10462000 0 0 Deletion 74999 LOC_Os08g17050 expressed protein FN3028-S Chr8 10387001 10462000 0 0 Deletion 74999 LOC_Os08g17060 expressed protein FN3028-S Chr8 10387001 10462000 0 0 Deletion 74999 LOC_Os08g17070 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 10387001 10462000 0 0 Deletion 74999 LOC_Os08g17080 PPR repeat domain containing protein, putative, expressed FN3028-S Chr8 10387001 10462000 0 0 Deletion 74999 LOC_Os08g17090 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 10772001 10793000 0 0 Deletion 20999 LOC_Os08g17630 expressed protein FN3028-S Chr8 10772001 10793000 0 0 Deletion 20999 LOC_Os08g17640 ZOS8-02 - C2H2 zinc finger protein, expressed FN3028-S Chr8 10772001 10793000 0 0 Deletion 20999 LOC_Os08g17680 stromal cell-derived factor 2-like protein precursor, putative, expressed FN3028-S Chr8 10813001 10844000 0 0 Deletion 30999 LOC_Os08g17690 retrotransposon protein, putative, unclassified FN3028-S Chr8 10813001 10844000 0 0 Deletion 30999 LOC_Os08g17700 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr8 10813001 10844000 0 0 Deletion 30999 LOC_Os08g17710 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr8 10813001 10844000 0 0 Deletion 30999 LOC_Os08g17720 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr8 10813001 10844000 0 0 Deletion 30999 LOC_Os08g17750 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr8 10859001 10917000 0 0 Deletion 57999 LOC_Os08g17760 expressed protein FN3028-S Chr8 10859001 10917000 0 0 Deletion 57999 LOC_Os08g17770 expressed protein FN3028-S Chr8 10859001 10917000 0 0 Deletion 57999 LOC_Os08g17784 purple acid phosphatase, putative, expressed FN3028-S Chr8 11671001 11683000 0 0 Deletion 11999 LOC_Os08g19530 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 11671001 11683000 0 0 Deletion 11999 LOC_Os08g19540 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 11671001 11683000 0 0 Deletion 11999 LOC_Os08g19710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 11768004 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3028-S Chr8 11803001 11831000 0 0 Deletion 27999 LOC_Os08g19720 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 11803001 11831000 0 0 Deletion 27999 LOC_Os08g19730 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 11803001 11831000 0 0 Deletion 27999 LOC_Os08g19740 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr8 11803001 11831000 0 0 Deletion 27999 LOC_Os08g19750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 11803001 11831000 0 0 Deletion 27999 LOC_Os08g19760 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr8 11803001 11831000 0 0 Deletion 27999 LOC_Os08g20500 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 12308001 12349000 0 0 Deletion 40999 LOC_Os08g20544 expressed protein FN3028-S Chr8 12308001 12349000 0 0 Deletion 40999 LOC_Os08g21100 retrotransposon protein, putative, unclassified FN3028-S Chr8 12608001 12639000 0 0 Deletion 30999 LOC_Os08g21110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 12608001 12639000 0 0 Deletion 30999 LOC_Os08g21124 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 12608001 12639000 0 0 Deletion 30999 LOC_Os08g21140 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr8 12608001 12639000 0 0 Deletion 30999 LOC_Os08g22610 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr8 1342001 1368000 0 0 Deletion 25999 LOC_Os08g03030 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr8 1342001 1368000 0 0 Deletion 25999 LOC_Os08g03040 expressed protein FN3028-S Chr8 1342001 1368000 0 0 Deletion 25999 LOC_Os08g03050 hypothetical protein FN3028-S Chr8 1342001 1368000 0 0 Deletion 25999 LOC_Os08g03620 tetratricopeptide repeat domain containing protein, expressed FN3028-S Chr8 13606001 13620000 0 0 Deletion 13999 LOC_Os08g22620 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 13606001 13620000 0 0 Deletion 13999 LOC_Os08g22630 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 13606001 13620000 0 0 Deletion 13999 LOC_Os08g22640 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 13606001 13620000 0 0 Deletion 13999 LOC_Os08g22750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 13675001 13693000 0 0 Deletion 17999 LOC_Os08g22760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 13675001 13693000 0 0 Deletion 17999 LOC_Os08g22770 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr8 13675001 13693000 0 0 Deletion 17999 LOC_Os08g22780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 13675001 13693000 0 0 Deletion 17999 LOC_Os08g23440 amino acid permease family protein, putative, expressed FN3028-S Chr8 14189001 14206000 0 0 Deletion 16999 LOC_Os08g23450 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 14189001 14206000 0 0 Deletion 16999 LOC_Os08g25600 hypothetical protein FN3028-S Chr8 15302154 15302155 0 0 Deletion 1 upstream_gene_variant HET FN3028-S Chr8 15577001 15603000 0 0 Deletion 25999 LOC_Os08g25624 phosphate/phosphate translocator, putative, expressed FN3028-S Chr8 15577001 15603000 0 0 Deletion 25999 LOC_Os08g25640 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 15577001 15603000 0 0 Deletion 25999 LOC_Os08g25860 expressed protein FN3028-S Chr8 15748001 15777000 0 0 Deletion 28999 LOC_Os08g25864 expressed protein FN3028-S Chr8 15748001 15777000 0 0 Deletion 28999 LOC_Os08g25870 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 15748001 15777000 0 0 Deletion 28999 LOC_Os08g25880 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 15748001 15777000 0 0 Deletion 28999 LOC_Os08g25890 tetratricopeptide repeat, putative, expressed FN3028-S Chr8 15748001 15777000 0 0 Deletion 28999 LOC_Os08g25900 PsbP, putative, expressed FN3028-S Chr8 15748001 15777000 0 0 Deletion 28999 LOC_Os08g25960 transposon protein, putative, unclassified, expressed FN3028-S Chr8 15790001 15813000 0 0 Deletion 22999 LOC_Os08g25960 transposon protein, putative, unclassified, expressed FN3028-S Chr8 15790001 15813000 0 0 Deletion 22999 LOC_Os08g25970 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 15790001 15813000 0 0 Deletion 22999 LOC_Os08g25980 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 16008001 16022000 0 0 Deletion 13999 LOC_Os08g26270 expressed protein FN3028-S Chr8 16008001 16022000 0 0 Deletion 13999 LOC_Os08g26280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr8 16008001 16022000 0 0 Deletion 13999 LOC_Os08g27790 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 16930001 16968000 0 0 Deletion 37999 LOC_Os08g27800 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 16930001 16968000 0 0 Deletion 37999 LOC_Os08g27810 OsWAK115 - OsWAK receptor-like protein OsWAK-RLP, expressed FN3028-S Chr8 16930001 16968000 0 0 Deletion 37999 LOC_Os08g27824 NOL1/NOP2/sun family protein, putative, expressed FN3028-S Chr8 16930001 16968000 0 0 Deletion 37999 LOC_Os08g27840 phosphoenolpyruvate carboxylase, putative, expressed FN3028-S Chr8 16930001 16968000 0 0 Deletion 37999 LOC_Os08g28240 carotenoid cleavage dioxygenase, putative, expressed FN3028-S Chr8 1695001 1781000 0 0 Deletion 85999 LOC_Os08g03630 acyl-activating enzyme 14, putative, expressed FN3028-S Chr8 1695001 1781000 0 0 Deletion 85999 LOC_Os08g03640 60S acidic ribosomal protein P0, putative, expressed FN3028-S Chr8 1695001 1781000 0 0 Deletion 85999 LOC_Os08g03650 BTBN17 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed FN3028-S Chr8 1695001 1781000 0 0 Deletion 85999 LOC_Os08g03660 transposon protein, putative, unclassified, expressed FN3028-S Chr8 1695001 1781000 0 0 Deletion 85999 LOC_Os08g03670 galactosyltransferase family protein, putative, expressed FN3028-S Chr8 1695001 1781000 0 0 Deletion 85999 LOC_Os08g03676 pentatricopeptide, putative, expressed FN3028-S Chr8 1695001 1781000 0 0 Deletion 85999 LOC_Os08g03682 cytochrome P450, putative, expressed FN3028-S Chr8 1695001 1781000 0 0 Deletion 85999 LOC_Os08g03690 LTPL24 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3028-S Chr8 1695001 1781000 0 0 Deletion 85999 LOC_Os08g03700 glycerol-3-phosphate acyltransferase, putative, expressed FN3028-S Chr8 1695001 1781000 0 0 Deletion 85999 LOC_Os08g03710 expressed protein FN3028-S Chr8 1695001 1781000 0 0 Deletion 85999 LOC_Os08g03720 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr8 1695001 1781000 0 0 Deletion 85999 LOC_Os08g03730 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr8 1695001 1781000 0 0 Deletion 85999 LOC_Os08g03740 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr8 1695001 1781000 0 0 Deletion 85999 LOC_Os08g03800 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr8 17233001 17258000 0 0 Deletion 24999 LOC_Os08g28250 expressed protein FN3028-S Chr8 17233001 17258000 0 0 Deletion 24999 LOC_Os08g28260 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr8 17233001 17258000 0 0 Deletion 24999 LOC_Os08g28270 hypothetical protein FN3028-S Chr8 17233001 17258000 0 0 Deletion 24999 LOC_Os08g28470 disease resistance protein RPM1, putative, expressed FN3028-S Chr8 17381001 17402000 0 0 Deletion 20999 LOC_Os08g28480 expressed protein FN3028-S Chr8 17381001 17402000 0 0 Deletion 20999 LOC_Os08g28490 retrotransposon protein, putative, unclassified FN3028-S Chr8 17381001 17402000 0 0 Deletion 20999 LOC_Os08g28500 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 17381001 17402000 0 0 Deletion 20999 LOC_Os08g28570 resistance protein, putative, expressed FN3028-S Chr8 17456001 17477000 0 0 Deletion 20999 LOC_Os08g28580 hypothetical protein FN3028-S Chr8 17456001 17477000 0 0 Deletion 20999 LOC_Os08g28590 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr8 17456001 17477000 0 0 Deletion 20999 LOC_Os08g28600 resistance protein, putative, expressed FN3028-S Chr8 17480001 17504000 0 0 Deletion 23999 LOC_Os08g28630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 17480001 17504000 0 0 Deletion 23999 LOC_Os08g28640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 17480001 17504000 0 0 Deletion 23999 LOC_Os08g28650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 17480001 17504000 0 0 Deletion 23999 LOC_Os08g28750 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr8 17586001 17623000 0 0 Deletion 36999 LOC_Os08g28760 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr8 17586001 17623000 0 0 Deletion 36999 LOC_Os08g28770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 17586001 17623000 0 0 Deletion 36999 LOC_Os08g28780 SKP1, putative, expressed FN3028-S Chr8 17586001 17623000 0 0 Deletion 36999 LOC_Os08g28784 expressed protein FN3028-S Chr8 17586001 17623000 0 0 Deletion 36999 LOC_Os08g28790 dirigent, putative, expressed FN3028-S Chr8 17586001 17623000 0 0 Deletion 36999 LOC_Os08g28800 Skp1 family, dimerisation domain containing protein, expressed FN3028-S Chr8 17586001 17623000 0 0 Deletion 36999 LOC_Os08g28810 expressed protein FN3028-S Chr8 17586001 17623000 0 0 Deletion 36999 LOC_Os08g29030 expressed protein FN3028-S Chr8 17776001 17838000 0 0 Deletion 61999 LOC_Os08g29030 expressed protein FN3028-S Chr8 17776001 17838000 0 0 Deletion 61999 LOC_Os08g29040 protein kinase domain containing protein, expressed FN3028-S Chr8 17776001 17838000 0 0 Deletion 61999 LOC_Os08g29050 retrotransposon protein, putative, unclassified FN3028-S Chr8 17776001 17838000 0 0 Deletion 61999 LOC_Os08g29060 retrotransposon protein, putative, unclassified FN3028-S Chr8 17776001 17838000 0 0 Deletion 61999 LOC_Os08g29070 retrotransposon protein, putative, unclassified FN3028-S Chr8 17776001 17838000 0 0 Deletion 61999 LOC_Os08g29080 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 17776001 17838000 0 0 Deletion 61999 LOC_Os08g29090 hypothetical protein FN3028-S Chr8 17776001 17838000 0 0 Deletion 61999 LOC_Os08g29100 SAM domain family protein, expressed FN3028-S Chr8 17776001 17838000 0 0 Deletion 61999 LOC_Os08g29110 thioredoxin, putative, expressed FN3028-S Chr8 17776001 17838000 0 0 Deletion 61999 LOC_Os08g29124 expressed protein FN3028-S Chr8 17916507 17916507 0 0 Insertion 1 upstream_gene_variant HET FN3028-S Chr8 1808001 1826000 0 0 Deletion 17999 LOC_Os08g03810 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr8 1808001 1826000 0 0 Deletion 17999 LOC_Os08g03820 expressed protein FN3028-S Chr8 1808001 1826000 0 0 Deletion 17999 LOC_Os08g03920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 18101001 18120000 0 0 Deletion 18999 LOC_Os08g29530 double-stranded RNA binding motif containing protein, expressed FN3028-S Chr8 18101001 18120000 0 0 Deletion 18999 LOC_Os08g29540 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 18101001 18120000 0 0 Deletion 18999 LOC_Os08g29550 retrotransposon protein, putative, unclassified FN3028-S Chr8 18644001 18674000 0 0 Deletion 29999 LOC_Os08g30310 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr8 18644001 18674000 0 0 Deletion 29999 LOC_Os08g30320 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr8 18644001 18674000 0 0 Deletion 29999 LOC_Os08g30330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr8 1866001 1877000 0 0 Deletion 10999 LOC_Os08g03930 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 1866001 1877000 0 0 Deletion 10999 LOC_Os08g03940 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 1866001 1877000 0 0 Deletion 10999 LOC_Os08g04230 cysteine-rich repeat secretory protein 55 precursor, putative, expressed FN3028-S Chr8 18710001 18753000 0 0 Deletion 42999 LOC_Os08g30430 expressed protein FN3028-S Chr8 18710001 18753000 0 0 Deletion 42999 LOC_Os08g30440 expressed protein FN3028-S Chr8 18710001 18753000 0 0 Deletion 42999 LOC_Os08g30450 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr8 18710001 18753000 0 0 Deletion 42999 LOC_Os08g30460 expressed protein FN3028-S Chr8 18710001 18753000 0 0 Deletion 42999 LOC_Os08g30470 expressed protein FN3028-S Chr8 18710001 18753000 0 0 Deletion 42999 LOC_Os08g30590 C1-like domain containing protein, expressed FN3028-S Chr8 18848001 18859000 0 0 Deletion 10999 LOC_Os08g30600 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr8 18848001 18859000 0 0 Deletion 10999 LOC_Os08g30900 YDG/SRA domain containing protein, expressed FN3028-S Chr8 19066001 19112000 0 0 Deletion 45999 LOC_Os08g30910 YDG/SRA domain containing protein, expressed FN3028-S Chr8 19066001 19112000 0 0 Deletion 45999 LOC_Os08g30930 expressed protein FN3028-S Chr8 19066001 19112000 0 0 Deletion 45999 LOC_Os08g30940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 19066001 19112000 0 0 Deletion 45999 LOC_Os08g30950 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr8 19066001 19112000 0 0 Deletion 45999 LOC_Os08g31000 expressed protein FN3028-S Chr8 19142001 19168000 0 0 Deletion 25999 LOC_Os08g31010 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 19142001 19168000 0 0 Deletion 25999 LOC_Os08g31020 hypothetical protein FN3028-S Chr8 19142001 19168000 0 0 Deletion 25999 LOC_Os08g31030 HOTHEAD precursor, putative, expressed FN3028-S Chr8 19142001 19168000 0 0 Deletion 25999 LOC_Os08g31040 expressed protein FN3028-S Chr8 19142001 19168000 0 0 Deletion 25999 LOC_Os08g32620 ES43 protein, putative, expressed FN3028-S Chr8 19768599 Chr7 2440035 0 Translocation 0 FN3028-S Chr8 21178001 21221000 0 0 Deletion 42999 LOC_Os08g33840 hypothetical protein FN3028-S Chr8 21178001 21221000 0 0 Deletion 42999 LOC_Os08g33850 nucleoside-triphosphatase, putative, expressed FN3028-S Chr8 21178001 21221000 0 0 Deletion 42999 LOC_Os08g33860 zinc finger, C3HC4 type, putative, expressed FN3028-S Chr8 21178001 21221000 0 0 Deletion 42999 LOC_Os08g33870 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 21178001 21221000 0 0 Deletion 42999 LOC_Os08g33880 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed FN3028-S Chr8 21178001 21221000 0 0 Deletion 42999 LOC_Os08g33890 expressed protein FN3028-S Chr8 21178001 21221000 0 0 Deletion 42999 LOC_Os08g33900 CAAX amino terminal protease family protein, putative, expressed FN3028-S Chr8 21178001 21221000 0 0 Deletion 42999 LOC_Os08g33910 no apical meristem protein, putative, expressed FN3028-S Chr8 21178001 21221000 0 0 Deletion 42999 LOC_Os08g33950 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 21257001 21296000 0 0 Deletion 38999 LOC_Os08g33960 expressed protein FN3028-S Chr8 21257001 21296000 0 0 Deletion 38999 LOC_Os08g33970 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 21257001 21296000 0 0 Deletion 38999 LOC_Os08g33980 retrotransposon protein, putative, unclassified FN3028-S Chr8 21257001 21296000 0 0 Deletion 38999 LOC_Os08g34080 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 21365001 21397000 0 0 Deletion 31999 LOC_Os08g34090 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 21365001 21397000 0 0 Deletion 31999 LOC_Os08g34100 conserved hypothetical protein FN3028-S Chr8 21365001 21397000 0 0 Deletion 31999 LOC_Os08g34110 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr8 21365001 21397000 0 0 Deletion 31999 LOC_Os08g34120 expressed protein FN3028-S Chr8 21916001 21942000 0 0 Deletion 25999 LOC_Os08g34850 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 21916001 21942000 0 0 Deletion 25999 LOC_Os08g34860 OsFBX293 - F-box domain containing protein, expressed FN3028-S Chr8 21916001 21942000 0 0 Deletion 25999 LOC_Os08g34950 chaperonin Cpn60/TCP-1, putative, expressed FN3028-S Chr8 22006001 22063000 0 0 Deletion 56999 LOC_Os08g34960 MYB family transcription factor, putative, expressed FN3028-S Chr8 22006001 22063000 0 0 Deletion 56999 LOC_Os08g34970 conserved oligomeric Golgi complex component 3, putative, expressed FN3028-S Chr8 22006001 22063000 0 0 Deletion 56999 LOC_Os08g34980 hypothetical protein FN3028-S Chr8 22006001 22063000 0 0 Deletion 56999 LOC_Os08g34984 DUF581 domain containing protein, expressed FN3028-S Chr8 22006001 22063000 0 0 Deletion 56999 LOC_Os08g34990 late embryogenesis abundant protein, putative, expressed FN3028-S Chr8 22006001 22063000 0 0 Deletion 56999 LOC_Os08g35000 ARID/BRIGHT DNA-binding domain containing protein, expressed FN3028-S Chr8 22006001 22063000 0 0 Deletion 56999 LOC_Os08g35010 ARID/BRIGHT DNA-binding domain containing protein, expressed FN3028-S Chr8 22006001 22063000 0 0 Deletion 56999 LOC_Os08g35020 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 22006001 22063000 0 0 Deletion 56999 LOC_Os08g36310 cytochrome P450, putative, expressed FN3028-S Chr8 2249001 2260000 0 0 Deletion 10999 LOC_Os08g05370 conserved hypothetical protein FN3028-S Chr8 22873001 22893000 0 0 Deletion 19999 LOC_Os08g36320 decarboxylase, putative, expressed FN3028-S Chr8 22873001 22893000 0 0 Deletion 19999 LOC_Os08g36330 POLE2B - Putative DNA polymerase epsilon complex subunit, expressed FN3028-S Chr8 22873001 22893000 0 0 Deletion 19999 LOC_Os08g36420 metal cation transporter, putative, expressed FN3028-S Chr8 22991001 23006000 0 0 Deletion 14999 LOC_Os08g36440 HVA22, putative, expressed FN3028-S Chr8 22991001 23006000 0 0 Deletion 14999 LOC_Os08g36450 transcription regulator, putative, expressed FN3028-S Chr8 22991001 23006000 0 0 Deletion 14999 LOC_Os08g36460 expressed protein FN3028-S Chr8 22991001 23006000 0 0 Deletion 14999 LOC_Os08g36630 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed FN3028-S Chr8 23121001 23145000 0 0 Deletion 23999 LOC_Os08g36640 expressed protein FN3028-S Chr8 23121001 23145000 0 0 Deletion 23999 LOC_Os08g36650 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 23121001 23145000 0 0 Deletion 23999 LOC_Os08g36660 expressed protein FN3028-S Chr8 23121001 23145000 0 0 Deletion 23999 LOC_Os08g36670 transposon protein, putative, unclassified, expressed FN3028-S Chr8 23489010 23489010 0 0 Insertion 3 downstream_gene_variant HET FN3028-S Chr8 23574001 23596000 0 0 Deletion 21999 LOC_Os08g37310 uncharacterized protein, YigZ family, putative, expressed FN3028-S Chr8 23574001 23596000 0 0 Deletion 21999 LOC_Os08g37320 expressed protein FN3028-S Chr8 23574001 23596000 0 0 Deletion 21999 LOC_Os08g37340 hypothetical protein FN3028-S Chr8 23574001 23596000 0 0 Deletion 21999 LOC_Os08g37345 DNA binding protein, putative, expressed FN3028-S Chr8 23574001 23596000 0 0 Deletion 21999 LOC_Os08g37350 ubiquitin carboxyl-terminal hydrolase family protein, expressed FN3028-S Chr8 23574001 23596000 0 0 Deletion 21999 LOC_Os08g38330 OsFBX297 - F-box domain containing protein, expressed FN3028-S Chr8 24279001 24301000 0 0 Deletion 21999 LOC_Os08g38340 interferon-related developmental regulator family protein, putative, expressed FN3028-S Chr8 24279001 24301000 0 0 Deletion 21999 LOC_Os08g38350 expressed protein FN3028-S Chr8 24279001 24301000 0 0 Deletion 21999 LOC_Os08g38360 OsFBX298 - F-box domain containing protein, expressed FN3028-S Chr8 24279001 24301000 0 0 Deletion 21999 LOC_Os08g38370 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed FN3028-S Chr8 24279001 24301000 0 0 Deletion 21999 LOC_Os08g38380 RNA recognition motif containing protein, putative, expressed FN3028-S Chr8 24279001 24301000 0 0 Deletion 21999 LOC_Os08g38600 copine, putative, expressed FN3028-S Chr8 24401001 24439000 0 0 Deletion 37999 LOC_Os08g38610 pentatricopeptide, putative, expressed FN3028-S Chr8 24401001 24439000 0 0 Deletion 37999 LOC_Os08g38620 expressed protein FN3028-S Chr8 24401001 24439000 0 0 Deletion 37999 LOC_Os08g38630 conserved hypothetical protein FN3028-S Chr8 24401001 24439000 0 0 Deletion 37999 LOC_Os08g38640 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 24401001 24439000 0 0 Deletion 37999 LOC_Os08g38650 expressed protein FN3028-S Chr8 24401001 24439000 0 0 Deletion 37999 LOC_Os08g38660 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr8 24401001 24439000 0 0 Deletion 37999 LOC_Os08g38760 expressed protein FN3028-S Chr8 24507001 24531000 0 0 Deletion 23999 LOC_Os08g38780 core histone H2A/H2B/H3/H4, putative, expressed FN3028-S Chr8 24507001 24531000 0 0 Deletion 23999 LOC_Os08g38790 expressed protein FN3028-S Chr8 24507001 24531000 0 0 Deletion 23999 LOC_Os08g38800 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 24507001 24531000 0 0 Deletion 23999 LOC_Os08g38890 expressed protein FN3028-S Chr8 24732001 24755000 0 0 Deletion 22999 LOC_Os08g39160 formyl transferase, putative, expressed FN3028-S Chr8 24732001 24755000 0 0 Deletion 22999 LOC_Os08g39170 expressed protein FN3028-S Chr8 24732001 24755000 0 0 Deletion 22999 LOC_Os08g39174 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr8 24732001 24755000 0 0 Deletion 22999 LOC_Os08g39180 OsWAK73 - OsWAK receptor-like protein kinase, expressed FN3028-S Chr8 25538001 25566000 0 0 Deletion 27999 LOC_Os08g40350 expressed protein FN3028-S Chr8 25538001 25566000 0 0 Deletion 27999 LOC_Os08g40360 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr8 25538001 25566000 0 0 Deletion 27999 LOC_Os08g40370 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 25538001 25566000 0 0 Deletion 27999 LOC_Os08g40380 sulfotransferase domain containing protein, expressed FN3028-S Chr8 25538001 25566000 0 0 Deletion 27999 LOC_Os08g40440 dihydroflavonol-4-reductase, putative, expressed FN3028-S Chr8 25592001 25609000 0 0 Deletion 16999 LOC_Os08g40450 uvrB/uvrC motif family protein, expressed FN3028-S Chr8 25592001 25609000 0 0 Deletion 16999 LOC_Os08g40460 BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed FN3028-S Chr8 25592001 25609000 0 0 Deletion 16999 LOC_Os08g40470 expressed protein FN3028-S Chr8 25592001 25609000 0 0 Deletion 16999 LOC_Os08g40480 transposon protein, putative, Pong sub-class, expressed FN3028-S Chr8 25592001 25609000 0 0 Deletion 16999 LOC_Os08g40620 rabGAP/TBC domain-containing protein, putative, expressed FN3028-S Chr8 25714001 25779000 0 0 Deletion 64999 LOC_Os08g40630 mTERF domain containing protein, expressed FN3028-S Chr8 25714001 25779000 0 0 Deletion 64999 LOC_Os08g40640 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr8 25714001 25779000 0 0 Deletion 64999 LOC_Os08g40650 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN3028-S Chr8 25714001 25779000 0 0 Deletion 64999 LOC_Os08g40660 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 25714001 25779000 0 0 Deletion 64999 LOC_Os08g40670 retrotransposon protein, putative, unclassified FN3028-S Chr8 25714001 25779000 0 0 Deletion 64999 LOC_Os08g40680 glycosyl hydrolase, putative, expressed FN3028-S Chr8 25714001 25779000 0 0 Deletion 64999 LOC_Os08g40690 glycosyl hydrolase, putative, expressed FN3028-S Chr8 25714001 25779000 0 0 Deletion 64999 LOC_Os08g40700 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 25714001 25779000 0 0 Deletion 64999 LOC_Os08g40710 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 25714001 25779000 0 0 Deletion 64999 LOC_Os08g40720 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed FN3028-S Chr8 25714001 25779000 0 0 Deletion 64999 LOC_Os08g40730 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 25714001 25779000 0 0 Deletion 64999 LOC_Os08g40740 glycosyl hydrolase, putative, expressed FN3028-S Chr8 26453001 26481000 0 0 Deletion 27999 LOC_Os08g41900 expressed protein FN3028-S Chr8 26453001 26481000 0 0 Deletion 27999 LOC_Os08g41910 Sua5/YciO/YrdC/YwlC family protein, putative, expressed FN3028-S Chr8 26707774 26707774 0 0 Insertion 2 upstream_gene_variant HET FN3028-S Chr8 27271001 27287000 0 0 Deletion 15999 LOC_Os08g43130 NAP1, putative, expressed FN3028-S Chr8 27271001 27287000 0 0 Deletion 15999 LOC_Os08g43350 NC domain-containing protein, putative, expressed FN3028-S Chr8 27395001 27431000 0 0 Deletion 35999 LOC_Os08g43360 RNA recognition motif containing protein, putative, expressed FN3028-S Chr8 27395001 27431000 0 0 Deletion 35999 LOC_Os08g43370 6-phosphogluconolactonase, putative, expressed FN3028-S Chr8 27395001 27431000 0 0 Deletion 35999 LOC_Os08g43380 TBC domain containing protein, expressed FN3028-S Chr8 27395001 27431000 0 0 Deletion 35999 LOC_Os08g43390 cytochrome P450, putative, expressed FN3028-S Chr8 27395001 27431000 0 0 Deletion 35999 LOC_Os08g44150 transmembrane 9 superfamily member, putative, expressed FN3028-S Chr8 27796001 27816000 0 0 Deletion 19999 LOC_Os08g44160 expressed protein FN3028-S Chr8 27796001 27816000 0 0 Deletion 19999 LOC_Os08g44170 transposon protein, putative, unclassified, expressed FN3028-S Chr8 27796001 27816000 0 0 Deletion 19999 LOC_Os08g44180 expressed protein FN3028-S Chr8 27796001 27816000 0 0 Deletion 19999 LOC_Os09g01780 transposon protein, putative, unclassified, expressed FN3028-S Chr8 2835001 2886000 0 0 Deletion 50999 LOC_Os08g05380 expressed protein FN3028-S Chr8 2835001 2886000 0 0 Deletion 50999 LOC_Os08g05390 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr8 2835001 2886000 0 0 Deletion 50999 LOC_Os08g05400 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr8 2835001 2886000 0 0 Deletion 50999 LOC_Os08g05410 expressed protein FN3028-S Chr8 2835001 2886000 0 0 Deletion 50999 LOC_Os08g05420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr8 2835001 2886000 0 0 Deletion 50999 LOC_Os08g05430 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr8 2835001 2886000 0 0 Deletion 50999 LOC_Os08g05440 NB-ARC domain containing protein, expressed FN3028-S Chr8 2835001 2886000 0 0 Deletion 50999 LOC_Os08g05690 ABC transporter, ATP-binding protein, putative, expressed FN3028-S Chr8 3051001 3097000 0 0 Deletion 45999 LOC_Os08g05700 expressed protein FN3028-S Chr8 3051001 3097000 0 0 Deletion 45999 LOC_Os08g05710 ABC transporter, ATP-binding protein, putative, expressed FN3028-S Chr8 3051001 3097000 0 0 Deletion 45999 LOC_Os08g05720 integral membrane protein, putative, expressed FN3028-S Chr8 3051001 3097000 0 0 Deletion 45999 LOC_Os08g05750 pentatricopeptide, putative, expressed FN3028-S Chr8 3051001 3097000 0 0 Deletion 45999 LOC_Os08g05770 expressed protein FN3028-S Chr8 3051001 3097000 0 0 Deletion 45999 LOC_Os08g05780 expressed protein FN3028-S Chr8 3051001 3097000 0 0 Deletion 45999 LOC_Os08g06180 reticuline oxidase precursor, putative FN3028-S Chr8 3955001 3995000 0 0 Deletion 39999 LOC_Os08g07090 expressed protein FN3028-S Chr8 3955001 3995000 0 0 Deletion 39999 LOC_Os08g07100 terpene synthase, putative, expressed FN3028-S Chr8 3955001 3995000 0 0 Deletion 39999 LOC_Os08g07120 terpene synthase, putative, expressed FN3028-S Chr8 3955001 3995000 0 0 Deletion 39999 LOC_Os08g07130 transposon protein, putative, unclassified, expressed FN3028-S Chr8 3955001 3995000 0 0 Deletion 39999 LOC_Os08g07350 hypothetical protein FN3028-S Chr8 4117001 4134000 0 0 Deletion 16999 LOC_Os08g07360 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr8 4117001 4134000 0 0 Deletion 16999 LOC_Os08g07370 RGH1A, putative, expressed FN3028-S Chr8 4117001 4134000 0 0 Deletion 16999 LOC_Os08g07380 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 4117001 4134000 0 0 Deletion 16999 LOC_Os08g07940 disease resistance protein RPM1, putative, expressed FN3028-S Chr8 5075001 5104000 0 0 Deletion 28999 LOC_Os08g08770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 5075001 5104000 0 0 Deletion 28999 LOC_Os08g08780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 5075001 5104000 0 0 Deletion 28999 LOC_Os08g08790 ubiquitin family protein, putative, expressed FN3028-S Chr8 5075001 5104000 0 0 Deletion 28999 LOC_Os08g08800 expressed protein FN3028-S Chr8 5075001 5104000 0 0 Deletion 28999 LOC_Os08g09110 NB-ARC domain containing protein, expressed FN3028-S Chr8 5276001 5301000 0 0 Deletion 24999 LOC_Os08g09120 expressed protein FN3028-S Chr8 5276001 5301000 0 0 Deletion 24999 LOC_Os08g09130 conserved hypothetical protein FN3028-S Chr8 5276001 5301000 0 0 Deletion 24999 LOC_Os08g09140 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 5276001 5301000 0 0 Deletion 24999 LOC_Os08g09710 OsFBX271 - F-box domain containing protein, expressed FN3028-S Chr8 556001 583000 0 0 Deletion 26999 LOC_Os08g01910 expressed protein FN3028-S Chr8 556001 583000 0 0 Deletion 26999 LOC_Os08g01920 SGR2, putative, expressed FN3028-S Chr8 556001 583000 0 0 Deletion 26999 LOC_Os08g01930 KH domain-containing protein, putative, expressed FN3028-S Chr8 556001 583000 0 0 Deletion 26999 LOC_Os08g01940 non-lysosomal glucosylceramidase, putative, expressed FN3028-S Chr8 556001 583000 0 0 Deletion 26999 LOC_Os08g02270 hypothetical protein FN3028-S Chr8 5609001 5654000 0 0 Deletion 44999 LOC_Os08g09715 F-box domain containing protein, expressed FN3028-S Chr8 5609001 5654000 0 0 Deletion 44999 LOC_Os08g09720 OsFBX272 - F-box domain containing protein, expressed FN3028-S Chr8 5609001 5654000 0 0 Deletion 44999 LOC_Os08g09730 OsFBX273 - F-box domain containing protein, expressed FN3028-S Chr8 5609001 5654000 0 0 Deletion 44999 LOC_Os08g09740 OsFBX274 - F-box domain containing protein, expressed FN3028-S Chr8 5609001 5654000 0 0 Deletion 44999 LOC_Os08g09750 OsFBL44 - F-box domain and LRR containing protein, expressed FN3028-S Chr8 5609001 5654000 0 0 Deletion 44999 LOC_Os08g09760 OsFBX275 - F-box domain containing protein, expressed FN3028-S Chr8 5609001 5654000 0 0 Deletion 44999 LOC_Os08g09770 DnaK family protein, putative, expressed FN3028-S Chr8 5609001 5654000 0 0 Deletion 44999 LOC_Os08g09780 expressed protein FN3028-S Chr8 5609001 5654000 0 0 Deletion 44999 LOC_Os08g10150 SHR5-receptor-like kinase, putative, expressed FN3028-S Chr8 5890001 5908000 0 0 Deletion 17999 LOC_Os08g10150 SHR5-receptor-like kinase, putative, expressed FN3028-S Chr8 5890001 5908000 0 0 Deletion 17999 LOC_Os08g10160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 5890001 5908000 0 0 Deletion 17999 LOC_Os08g10180 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 6010001 6042000 0 0 Deletion 31999 LOC_Os08g10320 SHR5-receptor-like kinase, putative, expressed FN3028-S Chr8 6010001 6042000 0 0 Deletion 31999 LOC_Os08g10330 SHR5-receptor-like kinase, putative, expressed FN3028-S Chr8 6010001 6042000 0 0 Deletion 31999 LOC_Os08g12020 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 7057001 7086000 0 0 Deletion 28999 LOC_Os08g12020 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 7805001 7819000 0 0 Deletion 13999 LOC_Os08g13150 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr8 7805001 7819000 0 0 Deletion 13999 LOC_Os08g13490 expressed protein FN3028-S Chr8 8028001 8079000 0 0 Deletion 50999 LOC_Os08g13500 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 8028001 8079000 0 0 Deletion 50999 LOC_Os08g13510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 8028001 8079000 0 0 Deletion 50999 LOC_Os08g13520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 8028001 8079000 0 0 Deletion 50999 LOC_Os08g13530 hypothetical protein FN3028-S Chr8 8028001 8079000 0 0 Deletion 50999 LOC_Os08g13540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 8028001 8079000 0 0 Deletion 50999 LOC_Os08g13550 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr8 8028001 8079000 0 0 Deletion 50999 LOC_Os08g13560 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 8028001 8079000 0 0 Deletion 50999 LOC_Os08g13570 exo70 exocyst complex subunit family protein, putative, expressed FN3028-S Chr8 8028001 8079000 0 0 Deletion 50999 LOC_Os08g13580 transposon protein, putative, unclassified, expressed FN3028-S Chr8 8028001 8079000 0 0 Deletion 50999 LOC_Os08g13590 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 807001 823000 0 0 Deletion 15999 LOC_Os08g02280 hypothetical protein FN3028-S Chr8 807001 823000 0 0 Deletion 15999 LOC_Os08g02350 expressed protein FN3028-S Chr8 8869889 8869904 0 0 Deletion 15 upstream_gene_variant HET FN3028-S Chr8 8929001 8967000 0 0 Deletion 37999 LOC_Os08g14850 resistance protein, putative, expressed FN3028-S Chr8 8929001 8967000 0 0 Deletion 37999 LOC_Os08g14860 cytochrome b-c1 complex subunit 7, putative, expressed FN3028-S Chr8 8929001 8967000 0 0 Deletion 37999 LOC_Os08g14870 hypothetical protein FN3028-S Chr8 8929001 8967000 0 0 Deletion 37999 LOC_Os08g14880 transposon protein, putative, unclassified, expressed FN3028-S Chr8 8929001 8967000 0 0 Deletion 37999 LOC_Os08g14920 expressed protein FN3028-S Chr8 8987001 9052000 0 0 Deletion 64999 LOC_Os08g14930 hypothetical protein FN3028-S Chr8 8987001 9052000 0 0 Deletion 64999 LOC_Os08g14940 receptor kinase, putative, expressed FN3028-S Chr8 8987001 9052000 0 0 Deletion 64999 LOC_Os08g14950 receptor-like protein kinase 2 precursor, putative, expressed FN3028-S Chr8 8987001 9052000 0 0 Deletion 64999 LOC_Os08g14960 receptor-like protein kinase precursor, putative, expressed FN3028-S Chr8 8987001 9052000 0 0 Deletion 64999 LOC_Os08g14970 DUF640 domain containing protein, putative, expressed FN3028-S Chr8 8987001 9052000 0 0 Deletion 64999 LOC_Os08g14980 expressed protein FN3028-S Chr8 8987001 9052000 0 0 Deletion 64999 LOC_Os08g14990 receptor-like protein kinase 2 precursor, putative, expressed FN3028-S Chr8 8987001 9052000 0 0 Deletion 64999 LOC_Os08g15000 pentatricopeptide repeat domain containing protein, putative, expressed FN3028-S Chr8 8987001 9052000 0 0 Deletion 64999 LOC_Os08g15040 ADP-ribosylation factor, putative, expressed FN3028-S Chr8 9082001 9098000 0 0 Deletion 15999 LOC_Os08g15290 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 909001 928000 0 0 Deletion 18999 LOC_Os08g02354 expressed protein FN3028-S Chr8 909001 928000 0 0 Deletion 18999 LOC_Os08g03020 lectin-like receptor kinase 1, putative, expressed FN3028-S Chr8 9184146 9184146 0 0 Insertion 3 INTRON HET FN3028-S Chr8 9301001 9319000 0 0 Deletion 17999 LOC_Os08g15300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 9301001 9319000 0 0 Deletion 17999 LOC_Os08g15310 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr8 9301001 9319000 0 0 Deletion 17999 LOC_Os08g15320 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr8 9301001 9319000 0 0 Deletion 17999 LOC_Os08g15350 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 9352001 9376000 0 0 Deletion 23999 LOC_Os08g15360 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 9352001 9376000 0 0 Deletion 23999 LOC_Os08g15370 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 9352001 9376000 0 0 Deletion 23999 LOC_Os08g15380 retrotransposon protein, putative, unclassified FN3028-S Chr8 9352001 9376000 0 0 Deletion 23999 LOC_Os08g15390 hypothetical protein FN3028-S Chr8 9352001 9376000 0 0 Deletion 23999 LOC_Os08g15400 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 9352001 9376000 0 0 Deletion 23999 LOC_Os08g15410 expressed protein FN3028-S Chr8 9352001 9376000 0 0 Deletion 23999 LOC_Os08g15700 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 9456138 9456139 0 0 Deletion 1 upstream_gene_variant HET FN3028-S Chr8 9530001 9562000 0 0 Deletion 31999 LOC_Os08g15710 DC1 domain, putative, expressed FN3028-S Chr8 9530001 9562000 0 0 Deletion 31999 LOC_Os08g15720 retrotransposon protein, putative, LINE subclass, expressed FN3028-S Chr8 9530001 9562000 0 0 Deletion 31999 LOC_Os08g15730 hypothetical protein FN3028-S Chr8 9530001 9562000 0 0 Deletion 31999 LOC_Os08g15740 conserved hypothetical protein FN3028-S Chr8 9530001 9562000 0 0 Deletion 31999 LOC_Os08g15750 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr8 9530001 9562000 0 0 Deletion 31999 LOC_Os08g15760 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr8 9530001 9562000 0 0 Deletion 31999 LOC_Os08g15770 expressed protein FN3028-S Chr8 9530001 9562000 0 0 Deletion 31999 LOC_Os08g15780 DC1 domain, putative, expressed FN3028-S Chr8 9530001 9562000 0 0 Deletion 31999 LOC_Os08g15800 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr8 9575001 9609000 0 0 Deletion 33999 LOC_Os08g15800 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr8 9575001 9609000 0 0 Deletion 33999 LOC_Os08g15810 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr8 9575001 9609000 0 0 Deletion 33999 LOC_Os08g15820 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr8 9639001 9684000 0 0 Deletion 44999 LOC_Os08g15870 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr8 9639001 9684000 0 0 Deletion 44999 LOC_Os08g15880 NBS-LRR disease resistance protein, putative, expressed FN3028-S Chr8 9639001 9684000 0 0 Deletion 44999 LOC_Os08g15890 hypothetical protein FN3028-S Chr8 9639001 9684000 0 0 Deletion 44999 LOC_Os08g16160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr8 9753069 G-A 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HOMO FN3028-S Chr8 9847001 9872000 0 0 Deletion 24999 LOC_Os08g16170 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr8 9847001 9872000 0 0 Deletion 24999 LOC_Os08g16180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 9847001 9872000 0 0 Deletion 24999 LOC_Os08g16190 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr8 9847001 9872000 0 0 Deletion 24999 LOC_Os08g16210 expressed protein FN3028-S Chr8 9881001 9909000 0 0 Deletion 27999 LOC_Os08g16220 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr8 9881001 9909000 0 0 Deletion 27999 LOC_Os08g16230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 9881001 9909000 0 0 Deletion 27999 LOC_Os08g16240 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr8 9881001 9909000 0 0 Deletion 27999 LOC_Os08g16670 OsFBX280 - F-box domain containing protein, expressed FN3028-S Chr9 10140001 10176000 0 0 Deletion 35999 LOC_Os09g16540 protein kinase, putative, expressed FN3028-S Chr9 10140001 10176000 0 0 Deletion 35999 LOC_Os09g16550 ankyrin repeat family protein, putative, expressed FN3028-S Chr9 10140001 10176000 0 0 Deletion 35999 LOC_Os09g16560 hypothetical protein FN3028-S Chr9 10140001 10176000 0 0 Deletion 35999 LOC_Os09g16570 hypothetical protein FN3028-S Chr9 10140001 10176000 0 0 Deletion 35999 LOC_Os09g16580 amidase family protein, putative, expressed FN3028-S Chr9 10140001 10176000 0 0 Deletion 35999 LOC_Os09g17910 expressed protein FN3028-S Chr9 1066001 1102000 0 0 Deletion 35999 LOC_Os09g02580 hypothetical protein FN3028-S Chr9 1066001 1102000 0 0 Deletion 35999 LOC_Os09g02680 retrotransposon protein, putative, unclassified FN3028-S Chr9 10958001 10976000 0 0 Deletion 17999 LOC_Os09g17920 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr9 10958001 10976000 0 0 Deletion 17999 LOC_Os09g18000 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN3028-S Chr9 11013001 11056000 0 0 Deletion 42999 LOC_Os09g18000 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN3028-S Chr9 11013001 11056000 0 0 Deletion 42999 LOC_Os09g18010 expressed protein FN3028-S Chr9 11013001 11056000 0 0 Deletion 42999 LOC_Os09g18020 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN3028-S Chr9 11076001 11108000 0 0 Deletion 31999 LOC_Os09g18080 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr9 11076001 11108000 0 0 Deletion 31999 LOC_Os09g18090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr9 11076001 11108000 0 0 Deletion 31999 LOC_Os09g18100 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr9 11076001 11108000 0 0 Deletion 31999 LOC_Os09g18110 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 11076001 11108000 0 0 Deletion 31999 LOC_Os09g18120 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr9 11076001 11108000 0 0 Deletion 31999 LOC_Os09g18130 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr9 11271001 11314000 0 0 Deletion 42999 LOC_Os09g18380 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr9 11271001 11314000 0 0 Deletion 42999 LOC_Os09g18390 flavonol synthase/flavanone 3-hydroxylase, putative, expressed FN3028-S Chr9 11271001 11314000 0 0 Deletion 42999 LOC_Os09g18400 expressed protein FN3028-S Chr9 11271001 11314000 0 0 Deletion 42999 LOC_Os09g18410 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr9 11271001 11314000 0 0 Deletion 42999 LOC_Os09g18420 hypothetical protein FN3028-S Chr9 11271001 11314000 0 0 Deletion 42999 LOC_Os09g18430 transposon protein, putative, Pong sub-class, expressed FN3028-S Chr9 11271001 11314000 0 0 Deletion 42999 LOC_Os09g18440 transposon protein, putative, Pong sub-class, expressed FN3028-S Chr9 11271001 11314000 0 0 Deletion 42999 LOC_Os09g18450 flavonol synthase/flavanone 3-hydroxylase, putative, expressed FN3028-S Chr9 11336001 11360000 0 0 Deletion 23999 LOC_Os09g18500 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr9 11336001 11360000 0 0 Deletion 23999 LOC_Os09g18520 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed FN3028-S Chr9 11336001 11360000 0 0 Deletion 23999 LOC_Os09g19570 AGAP009532-PA, putative, expressed FN3028-S Chr9 11341172 11341172 0 0 Insertion 1 frameshift_variant HET LOC_Os09g18500 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr9 11710001 11729000 0 0 Deletion 18999 LOC_Os09g19580 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr9 11710001 11729000 0 0 Deletion 18999 LOC_Os09g19590 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 11710001 11729000 0 0 Deletion 18999 LOC_Os09g19600 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr9 11710001 11729000 0 0 Deletion 18999 LOC_Os09g19610 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 11710001 11729000 0 0 Deletion 18999 LOC_Os09g19620 retrotransposon protein, putative, unclassified FN3028-S Chr9 1186001 1213000 0 0 Deletion 26999 LOC_Os09g02690 expressed protein FN3028-S Chr9 1186001 1213000 0 0 Deletion 26999 LOC_Os09g02700 polyadenylate-binding protein, putative, expressed FN3028-S Chr9 1186001 1213000 0 0 Deletion 26999 LOC_Os09g03380 transposon protein, putative, Mutator sub-class, expressed FN3028-S Chr9 11972001 12052000 0 0 Deletion 79999 LOC_Os09g20010 SNF1-related protein kinase regulatory subunit beta-2, putative, expressed FN3028-S Chr9 11972001 12052000 0 0 Deletion 79999 LOC_Os09g20020 NBS-LRR resistance-like protein B8, putative, expressed FN3028-S Chr9 11972001 12052000 0 0 Deletion 79999 LOC_Os09g20024 expressed protein FN3028-S Chr9 11972001 12052000 0 0 Deletion 79999 LOC_Os09g20030 disease resistance RPP13-like protein 1, putative, expressed FN3028-S Chr9 11972001 12052000 0 0 Deletion 79999 LOC_Os09g20040 resistance-like protein I2GA-SH194-2, putative, expressed FN3028-S Chr9 11972001 12052000 0 0 Deletion 79999 LOC_Os09g20050 expressed protein FN3028-S Chr9 11972001 12052000 0 0 Deletion 79999 LOC_Os09g20060 hypothetical protein FN3028-S Chr9 11972001 12052000 0 0 Deletion 79999 LOC_Os09g20070 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr9 11972001 12052000 0 0 Deletion 79999 LOC_Os09g20080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr9 11972001 12052000 0 0 Deletion 79999 LOC_Os09g20090 L-ascorbate oxidase precursor, putative, expressed FN3028-S Chr9 11972001 12052000 0 0 Deletion 79999 LOC_Os09g20100 hypothetical protein FN3028-S Chr9 11972001 12052000 0 0 Deletion 79999 LOC_Os09g20110 expressed protein FN3028-S Chr9 11972001 12052000 0 0 Deletion 79999 LOC_Os09g20160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr9 12168001 12187000 0 0 Deletion 18999 LOC_Os09g20300 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 12168001 12187000 0 0 Deletion 18999 LOC_Os09g21290 expressed protein FN3028-S Chr9 12840001 12876000 0 0 Deletion 35999 LOC_Os09g21310 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 12840001 12876000 0 0 Deletion 35999 LOC_Os09g21320 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 12840001 12876000 0 0 Deletion 35999 LOC_Os09g21330 expressed protein FN3028-S Chr9 13297001 13343000 0 0 Deletion 45999 LOC_Os09g21970 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr9 13297001 13343000 0 0 Deletion 45999 LOC_Os09g21980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr9 13297001 13343000 0 0 Deletion 45999 LOC_Os09g21990 transposon protein, putative, unclassified FN3028-S Chr9 13297001 13343000 0 0 Deletion 45999 LOC_Os09g22000 hydrolase, HAD superfamily, Cof family, putative, expressed FN3028-S Chr9 13297001 13343000 0 0 Deletion 45999 LOC_Os09g22010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr9 13297001 13343000 0 0 Deletion 45999 LOC_Os09g22020 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 13297001 13343000 0 0 Deletion 45999 LOC_Os09g22030 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 13671001 13687000 0 0 Deletion 15999 LOC_Os09g23120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr9 13671001 13687000 0 0 Deletion 15999 LOC_Os09g23130 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 13671001 13687000 0 0 Deletion 15999 LOC_Os09g23220 glycosyl hydrolases family 16, putative, expressed FN3028-S Chr9 13778001 13796000 0 0 Deletion 17999 LOC_Os09g23230 transposon protein, putative, unclassified, expressed FN3028-S Chr9 13778001 13796000 0 0 Deletion 17999 LOC_Os09g23240 expressed protein FN3028-S Chr9 13778001 13796000 0 0 Deletion 17999 LOC_Os09g23460 expressed protein FN3028-S Chr9 13938001 13971000 0 0 Deletion 32999 LOC_Os09g23480 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr9 13938001 13971000 0 0 Deletion 32999 LOC_Os09g23490 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr9 13938001 13971000 0 0 Deletion 32999 LOC_Os09g23500 hypothetical protein FN3028-S Chr9 13938001 13971000 0 0 Deletion 32999 LOC_Os09g24260 WD domain, G-beta repeat domain containing protein, expressed FN3028-S Chr9 14415001 14425000 0 0 Deletion 9999 LOC_Os09g24280 hypothetical protein FN3028-S Chr9 14415001 14425000 0 0 Deletion 9999 LOC_Os09g24924 transporter family protein, putative, expressed FN3028-S Chr9 1454701 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3028-S Chr9 14880001 14902000 0 0 Deletion 21999 LOC_Os09g24940 expressed protein FN3028-S Chr9 14880001 14902000 0 0 Deletion 21999 LOC_Os09g24954 double-stranded RNA binding motif containing protein, expressed FN3028-S Chr9 14880001 14902000 0 0 Deletion 21999 LOC_Os09g25960 glutamate receptor, putative, expressed FN3028-S Chr9 15588001 15621000 0 0 Deletion 32999 LOC_Os09g25970 expressed protein FN3028-S Chr9 15588001 15621000 0 0 Deletion 32999 LOC_Os09g25980 glutamate receptor 2.6 precursor, putative, expressed FN3028-S Chr9 15588001 15621000 0 0 Deletion 32999 LOC_Os09g25990 glutamate receptor, putative, expressed FN3028-S Chr9 15588001 15621000 0 0 Deletion 32999 LOC_Os09g26000 glutamate receptor, putative, expressed FN3028-S Chr9 15588001 15621000 0 0 Deletion 32999 LOC_Os09g26270 expressed protein FN3028-S Chr9 1645001 1676000 0 0 Deletion 30999 LOC_Os09g03390 expressed protein FN3028-S Chr9 1645001 1676000 0 0 Deletion 30999 LOC_Os09g03410 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr9 16519001 16541000 0 0 Deletion 21999 LOC_Os09g27180 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr9 16519001 16541000 0 0 Deletion 21999 LOC_Os09g27190 RWP-RK domain-containing protein, putative, expressed FN3028-S Chr9 16519001 16541000 0 0 Deletion 21999 LOC_Os09g27200 hypothetical protein FN3028-S Chr9 16519001 16541000 0 0 Deletion 21999 LOC_Os09g28019 nucleoporin p58/p45, putative, expressed FN3028-S Chr9 1683001 1713000 0 0 Deletion 29999 LOC_Os09g03420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr9 1683001 1713000 0 0 Deletion 29999 LOC_Os09g03430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr9 1683001 1713000 0 0 Deletion 29999 LOC_Os09g03440 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr9 1683001 1713000 0 0 Deletion 29999 LOC_Os09g03450 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 1683001 1713000 0 0 Deletion 29999 LOC_Os09g03460 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 1683001 1713000 0 0 Deletion 29999 LOC_Os09g03470 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 1683001 1713000 0 0 Deletion 29999 LOC_Os09g03590 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 17006001 17023000 0 0 Deletion 16999 LOC_Os09g28040 OsPOP18 - Putative Prolyl Oligopeptidase homologue, expressed FN3028-S Chr9 17006001 17023000 0 0 Deletion 16999 LOC_Os09g32780 transposon protein, putative, unclassified, expressed FN3028-S Chr9 1767001 1794000 0 0 Deletion 26999 LOC_Os09g03600 immunoglobulin/major histocompatibility complex, putative, expressed FN3028-S Chr9 1767001 1794000 0 0 Deletion 26999 LOC_Os09g03610 flowering time control protein FCA, putative, expressed FN3028-S Chr9 1767001 1794000 0 0 Deletion 26999 LOC_Os09g03750 ankyrin, putative, expressed FN3028-S Chr9 1895001 1913000 0 0 Deletion 17999 LOC_Os09g03870 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 19558001 19586000 0 0 Deletion 27999 LOC_Os09g32790 hypothetical protein FN3028-S Chr9 19558001 19586000 0 0 Deletion 27999 LOC_Os09g32800 peptidase, T1 family, putative, expressed FN3028-S Chr9 19558001 19586000 0 0 Deletion 27999 LOC_Os09g32810 ribulose-phosphate 3-epimerase, putative, expressed FN3028-S Chr9 19558001 19586000 0 0 Deletion 27999 LOC_Os09g32820 uridine/cytidine kinase-like 1, putative, expressed FN3028-S Chr9 19558001 19586000 0 0 Deletion 27999 LOC_Os09g32830 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed FN3028-S Chr9 19558001 19586000 0 0 Deletion 27999 LOC_Os09g32840 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed FN3028-S Chr9 19558001 19586000 0 0 Deletion 27999 LOC_Os09g33750 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr9 1967001 2004000 0 0 Deletion 36999 LOC_Os09g03880 retrotransposon protein, putative, unclassified FN3028-S Chr9 1967001 2004000 0 0 Deletion 36999 LOC_Os09g03890 octicosapeptide/Phox/Bem1p, putative, expressed FN3028-S Chr9 1967001 2004000 0 0 Deletion 36999 LOC_Os09g03900 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 1967001 2004000 0 0 Deletion 36999 LOC_Os09g03910 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 1967001 2004000 0 0 Deletion 36999 LOC_Os09g03920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr9 1967001 2004000 0 0 Deletion 36999 LOC_Os09g04190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr9 19933001 19950000 0 0 Deletion 16999 LOC_Os09g33760 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr9 19933001 19950000 0 0 Deletion 16999 LOC_Os09g33770 protein transport protein Sec61 subunit alpha isoform 1, putative, expressed FN3028-S Chr9 19933001 19950000 0 0 Deletion 16999 LOC_Os09g33780 expressed protein FN3028-S Chr9 19933001 19950000 0 0 Deletion 16999 LOC_Os09g33920 expressed protein FN3028-S Chr9 20022001 20037000 0 0 Deletion 14999 LOC_Os09g33930 farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed FN3028-S Chr9 20022001 20037000 0 0 Deletion 14999 LOC_Os09g33940 expressed protein FN3028-S Chr9 20022001 20037000 0 0 Deletion 14999 LOC_Os09g36230 PPR repeat containing protein, expressed FN3028-S Chr9 20893001 20958000 0 0 Deletion 64999 LOC_Os09g36240 deoxyribodipyrimidine photolyase family protein, expressed FN3028-S Chr9 20893001 20958000 0 0 Deletion 64999 LOC_Os09g36244 expressed protein FN3028-S Chr9 20893001 20958000 0 0 Deletion 64999 LOC_Os09g36250 MYB family transcription factor, putative, expressed FN3028-S Chr9 20893001 20958000 0 0 Deletion 64999 LOC_Os09g36260 expressed protein FN3028-S Chr9 20893001 20958000 0 0 Deletion 64999 LOC_Os09g36270 pantothenate kinase, putative, expressed FN3028-S Chr9 20893001 20958000 0 0 Deletion 64999 LOC_Os09g36280 glycosyl hydrolases family 17, putative, expressed FN3028-S Chr9 20893001 20958000 0 0 Deletion 64999 LOC_Os09g36290 Ser/Thr protein phosphatase family protein, putative, expressed FN3028-S Chr9 20893001 20958000 0 0 Deletion 64999 LOC_Os09g36300 OsLonP4 - Putative Lon protease homologue, expressed FN3028-S Chr9 21493001 21517000 0 0 Deletion 23999 LOC_Os09g37240 glutathione S-transferase, C-terminal domain containing protein, expressed FN3028-S Chr9 21493001 21517000 0 0 Deletion 23999 LOC_Os09g37250 high mobility group, putative, expressed FN3028-S Chr9 21493001 21517000 0 0 Deletion 23999 LOC_Os09g38080 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 22254001 22274000 0 0 Deletion 19999 LOC_Os09g38720 mTERF domain containing protein, expressed FN3028-S Chr9 22254001 22274000 0 0 Deletion 19999 LOC_Os09g38730 26S protease regulatory subunit 6B, putative, expressed FN3028-S Chr9 22254001 22274000 0 0 Deletion 19999 LOC_Os09g38740 expressed protein FN3028-S Chr9 22254001 22274000 0 0 Deletion 19999 LOC_Os09g38750 expressed protein FN3028-S Chr9 22254001 22274000 0 0 Deletion 19999 LOC_Os09g38755 E3 ubiquitin-protein ligase HERC2, putative, expressed FN3028-S Chr9 22254001 22274000 0 0 Deletion 19999 LOC_Os09g38759 dihydroneopterin aldolase, putative, expressed FN3028-S Chr9 22254001 22274000 0 0 Deletion 19999 LOC_Os09g39100 cysteine proteinase EP-B 1 precursor, putative, expressed FN3028-S Chr9 22451001 22497000 0 0 Deletion 45999 LOC_Os09g39120 thiol protease SEN102 precursor, putative, expressed FN3028-S Chr9 22451001 22497000 0 0 Deletion 45999 LOC_Os09g39130 expressed protein FN3028-S Chr9 22451001 22497000 0 0 Deletion 45999 LOC_Os09g39140 vignain precursor, putative, expressed FN3028-S Chr9 22451001 22497000 0 0 Deletion 45999 LOC_Os09g39150 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr9 22451001 22497000 0 0 Deletion 45999 LOC_Os09g39160 thiol protease SEN102 precursor, putative, expressed FN3028-S Chr9 22451001 22497000 0 0 Deletion 45999 LOC_Os09g39170 cysteine proteinase COT44 precursor, putative, expressed FN3028-S Chr9 22601001 22632000 0 0 Deletion 30999 LOC_Os09g39330 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 22601001 22632000 0 0 Deletion 30999 LOC_Os09g39334 expressed protein FN3028-S Chr9 22601001 22632000 0 0 Deletion 30999 LOC_Os09g39340 expressed protein FN3028-S Chr9 22601001 22632000 0 0 Deletion 30999 LOC_Os09g39350 expressed protein FN3028-S Chr9 22601001 22632000 0 0 Deletion 30999 LOC_Os10g01790 transposon protein, putative, unclassified, expressed FN3028-S Chr9 3053001 3078000 0 0 Deletion 24999 LOC_Os09g06480 retrotransposon, putative, centromere-specific FN3028-S Chr9 3053001 3078000 0 0 Deletion 24999 LOC_Os09g06499 sulfate transporter 4.1, chloroplast precursor, putative, expressed FN3028-S Chr9 3053001 3078000 0 0 Deletion 24999 LOC_Os09g06780 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr9 3241001 3263000 0 0 Deletion 21999 LOC_Os09g06790 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr9 3241001 3263000 0 0 Deletion 21999 LOC_Os09g06800 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr9 3241001 3263000 0 0 Deletion 21999 LOC_Os09g06810 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr9 3241001 3263000 0 0 Deletion 21999 LOC_Os09g06820 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr9 3241001 3263000 0 0 Deletion 21999 LOC_Os09g06880 retrotransposon protein, putative, unclassified FN3028-S Chr9 3300001 3342000 0 0 Deletion 41999 LOC_Os09g06890 BTB/POZ domain containing protein, expressed FN3028-S Chr9 3300001 3342000 0 0 Deletion 41999 LOC_Os09g06900 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 3300001 3342000 0 0 Deletion 41999 LOC_Os09g06910 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 3300001 3342000 0 0 Deletion 41999 LOC_Os09g06920 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr9 3300001 3342000 0 0 Deletion 41999 LOC_Os09g07070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr9 3425001 3440000 0 0 Deletion 14999 LOC_Os09g07080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr9 3425001 3440000 0 0 Deletion 14999 LOC_Os09g07110 retrotransposon protein, putative, unclassified FN3028-S Chr9 3454001 3486000 0 0 Deletion 31999 LOC_Os09g07120 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed FN3028-S Chr9 3454001 3486000 0 0 Deletion 31999 LOC_Os09g07130 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 3454001 3486000 0 0 Deletion 31999 LOC_Os09g07290 GDSL-like lipase/acylhydrolase, putative, expressed FN3028-S Chr9 3584001 3603000 0 0 Deletion 18999 LOC_Os09g07294 purity of essence, putative, expressed FN3028-S Chr9 3584001 3603000 0 0 Deletion 18999 LOC_Os09g07300 BIG, putative, expressed FN3028-S Chr9 3696001 3714000 0 0 Deletion 17999 LOC_Os09g07430 retrotransposon, putative, centromere-specific, expressed FN3028-S Chr9 3696001 3714000 0 0 Deletion 17999 LOC_Os09g07580 mla1, putative, expressed FN3028-S Chr9 3797001 3821000 0 0 Deletion 23999 LOC_Os09g07590 RGH1A, putative, expressed FN3028-S Chr9 3797001 3821000 0 0 Deletion 23999 LOC_Os09g07600 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 3797001 3821000 0 0 Deletion 23999 LOC_Os09g07610 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 3797001 3821000 0 0 Deletion 23999 LOC_Os09g07860 retrotransposon protein, putative, unclassified FN3028-S Chr9 3998001 4041000 0 0 Deletion 42999 LOC_Os09g07870 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 3998001 4041000 0 0 Deletion 42999 LOC_Os09g07880 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr9 3998001 4041000 0 0 Deletion 42999 LOC_Os09g07890 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr9 3998001 4041000 0 0 Deletion 42999 LOC_Os09g07900 ubiquitin-protein ligase 1, putative, expressed FN3028-S Chr9 3998001 4041000 0 0 Deletion 42999 LOC_Os09g07910 DNA-directed RNA polymerase subunit alpha, putative, expressed FN3028-S Chr9 3998001 4041000 0 0 Deletion 42999 LOC_Os09g07940 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 4069001 4094000 0 0 Deletion 24999 LOC_Os09g07950 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 4069001 4094000 0 0 Deletion 24999 LOC_Os09g07960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr9 4069001 4094000 0 0 Deletion 24999 LOC_Os09g08160 plant protein of unknown function domain containing protein, expressed FN3028-S Chr9 4227001 4255000 0 0 Deletion 27999 LOC_Os09g08170 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 4227001 4255000 0 0 Deletion 27999 LOC_Os09g08180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr9 4227001 4255000 0 0 Deletion 27999 LOC_Os09g08190 sulfotransferase domain containing protein, expressed FN3028-S Chr9 4290001 4330000 0 0 Deletion 39999 LOC_Os09g08310 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr9 4290001 4330000 0 0 Deletion 39999 LOC_Os09g08330 hypothetical protein FN3028-S Chr9 4290001 4330000 0 0 Deletion 39999 LOC_Os09g08340 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 4290001 4330000 0 0 Deletion 39999 LOC_Os09g08350 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 4290001 4330000 0 0 Deletion 39999 LOC_Os09g08360 expressed protein FN3028-S Chr9 4390001 4405000 0 0 Deletion 14999 LOC_Os09g08440 nodulin MtN3 family protein, putative, expressed FN3028-S Chr9 4390001 4405000 0 0 Deletion 14999 LOC_Os09g08940 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr9 4695129 Chr2 5420442 0 Translocation 0 FN3028-S Chr9 4754001 4791000 0 0 Deletion 36999 LOC_Os09g08950 expressed protein FN3028-S Chr9 4754001 4791000 0 0 Deletion 36999 LOC_Os09g08960 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 4754001 4791000 0 0 Deletion 36999 LOC_Os09g08970 expressed protein FN3028-S Chr9 4754001 4791000 0 0 Deletion 36999 LOC_Os09g08980 retrotransposon protein, putative, unclassified FN3028-S Chr9 4754001 4791000 0 0 Deletion 36999 LOC_Os09g08990 cytochrome P450, putative, expressed FN3028-S Chr9 4754001 4791000 0 0 Deletion 36999 LOC_Os09g09000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr9 541001 553000 0 0 Deletion 11999 LOC_Os09g01790 expressed protein FN3028-S Chr9 541001 553000 0 0 Deletion 11999 LOC_Os09g01800 retrotransposon protein, putative, unclassified FN3028-S Chr9 541001 553000 0 0 Deletion 11999 LOC_Os09g01900 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr9 5769257 G-T 0 0 Single Base Substitution 0 INTRON HET FN3028-S Chr9 5905001 5915000 0 0 Deletion 9999 LOC_Os09g10830 hypothetical protein FN3028-S Chr9 5905001 5915000 0 0 Deletion 9999 LOC_Os09g11010 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 6096001 6168000 0 0 Deletion 71999 LOC_Os09g11020 NBS-LRR disease resistance protein, putative, expressed FN3028-S Chr9 6096001 6168000 0 0 Deletion 71999 LOC_Os09g11030 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 6096001 6168000 0 0 Deletion 71999 LOC_Os09g11040 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr9 6096001 6168000 0 0 Deletion 71999 LOC_Os09g11050 expressed protein FN3028-S Chr9 6096001 6168000 0 0 Deletion 71999 LOC_Os09g11060 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr9 6096001 6168000 0 0 Deletion 71999 LOC_Os09g11070 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr9 6096001 6168000 0 0 Deletion 71999 LOC_Os09g11080 retrotransposon protein, putative, Ty3-gypsy subclass FN3028-S Chr9 6096001 6168000 0 0 Deletion 71999 LOC_Os09g11090 expressed protein FN3028-S Chr9 6096001 6168000 0 0 Deletion 71999 LOC_Os09g11100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr9 6096001 6168000 0 0 Deletion 71999 LOC_Os09g11110 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 6096001 6168000 0 0 Deletion 71999 LOC_Os09g11120 expressed protein FN3028-S Chr9 6096001 6168000 0 0 Deletion 71999 LOC_Os09g11130 hypothetical protein FN3028-S Chr9 6283001 6299000 0 0 Deletion 15999 LOC_Os09g11330 hypothetical protein FN3028-S Chr9 6283001 6299000 0 0 Deletion 15999 LOC_Os09g11400 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr9 6350001 6381000 0 0 Deletion 30999 LOC_Os09g11410 transposon protein, putative, CACTA, En/Spm sub-class FN3028-S Chr9 6350001 6381000 0 0 Deletion 30999 LOC_Os09g11420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr9 6350001 6381000 0 0 Deletion 30999 LOC_Os09g11440 expressed protein FN3028-S Chr9 6350001 6381000 0 0 Deletion 30999 LOC_Os09g11450 transporter, monovalent cation:proton antiporter-2 family, putative, expressed FN3028-S Chr9 6350001 6381000 0 0 Deletion 30999 LOC_Os09g11530 expressed protein FN3028-S Chr9 6443001 6467000 0 0 Deletion 23999 LOC_Os09g11540 expressed protein FN3028-S Chr9 6443001 6467000 0 0 Deletion 23999 LOC_Os09g11550 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr9 6443001 6467000 0 0 Deletion 23999 LOC_Os09g11560 expressed protein FN3028-S Chr9 6443001 6467000 0 0 Deletion 23999 LOC_Os09g11570 retrotransposon protein, putative, unclassified FN3028-S Chr9 6443001 6467000 0 0 Deletion 23999 LOC_Os09g11580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr9 6443001 6467000 0 0 Deletion 23999 LOC_Os09g11850 ulp1 protease family, C-terminal catalytic domain containing protein, expressed FN3028-S Chr9 6677001 6739000 0 0 Deletion 61999 LOC_Os09g11900 expressed protein FN3028-S Chr9 6677001 6739000 0 0 Deletion 61999 LOC_Os09g11910 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr9 6677001 6739000 0 0 Deletion 61999 LOC_Os09g11920 transposon protein, putative, unclassified, expressed FN3028-S Chr9 6677001 6739000 0 0 Deletion 61999 LOC_Os09g11930 expressed protein FN3028-S Chr9 6677001 6739000 0 0 Deletion 61999 LOC_Os09g11940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr9 6677001 6739000 0 0 Deletion 61999 LOC_Os09g11950 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 6756001 6785000 0 0 Deletion 28999 LOC_Os09g12000 hypothetical protein FN3028-S Chr9 6756001 6785000 0 0 Deletion 28999 LOC_Os09g12010 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 6756001 6785000 0 0 Deletion 28999 LOC_Os09g12020 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 6756001 6785000 0 0 Deletion 28999 LOC_Os09g12490 retrotransposon protein, putative, unclassified FN3028-S Chr9 687001 699000 0 0 Deletion 11999 LOC_Os09g01990 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 687001 699000 0 0 Deletion 11999 LOC_Os09g02000 expressed protein FN3028-S Chr9 687001 699000 0 0 Deletion 11999 LOC_Os09g02010 expressed protein FN3028-S Chr9 687001 699000 0 0 Deletion 11999 LOC_Os09g02570 hypothetical protein FN3028-S Chr9 7155001 7170000 0 0 Deletion 14999 LOC_Os09g12500 EMB1381, putative, expressed FN3028-S Chr9 7422032 7422032 0 0 Insertion 1 frameshift_variant HET LOC_Os09g12890 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr9 8065001 8088000 0 0 Deletion 22999 LOC_Os09g13780 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 8065001 8088000 0 0 Deletion 22999 LOC_Os09g13790 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr9 8065001 8088000 0 0 Deletion 22999 LOC_Os09g13800 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr9 8065001 8088000 0 0 Deletion 22999 LOC_Os09g14040 transposon protein, putative, unclassified, expressed FN3028-S Chr9 8298001 8355000 0 0 Deletion 56999 LOC_Os09g14050 expressed protein FN3028-S Chr9 8298001 8355000 0 0 Deletion 56999 LOC_Os09g14060 disease resistance protein RPS2, putative, expressed FN3028-S Chr9 8298001 8355000 0 0 Deletion 56999 LOC_Os09g14070 retrotransposon protein, putative, Ty1-copia subclass FN3028-S Chr9 8298001 8355000 0 0 Deletion 56999 LOC_Os09g14080 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 8298001 8355000 0 0 Deletion 56999 LOC_Os09g14090 retrotransposon protein, putative, unclassified FN3028-S Chr9 8298001 8355000 0 0 Deletion 56999 LOC_Os09g14100 disease resistance protein RPS2, putative, expressed FN3028-S Chr9 8298001 8355000 0 0 Deletion 56999 LOC_Os09g14550 RNA recognition motif containing protein, putative, expressed FN3028-S Chr9 8618001 8664000 0 0 Deletion 45999 LOC_Os09g14560 expressed protein FN3028-S Chr9 8618001 8664000 0 0 Deletion 45999 LOC_Os09g14570 tropinone reductase, putative, expressed FN3028-S Chr9 8618001 8664000 0 0 Deletion 45999 LOC_Os09g14580 protein kinase domain containing protein, expressed FN3028-S Chr9 8618001 8664000 0 0 Deletion 45999 LOC_Os09g14590 proteasome maturation factor UMP1 family protein, expressed FN3028-S Chr9 8618001 8664000 0 0 Deletion 45999 LOC_Os09g14600 peroxisomal membrane protein-related, putative, expressed FN3028-S Chr9 8618001 8664000 0 0 Deletion 45999 LOC_Os09g14610 DCL2, putative, expressed FN3028-S Chr9 8618001 8664000 0 0 Deletion 45999 LOC_Os09g14710 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 8742001 8766000 0 0 Deletion 23999 LOC_Os09g14730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr9 8742001 8766000 0 0 Deletion 23999 LOC_Os09g14740 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 8742001 8766000 0 0 Deletion 23999 LOC_Os09g14880 transposon protein, putative, Pong sub-class, expressed FN3028-S Chr9 8988001 9014000 0 0 Deletion 25999 LOC_Os09g14990 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3028-S Chr9 8988001 9014000 0 0 Deletion 25999 LOC_Os09g15050 ent-kaurene synthase A, chloroplast precursor, putative, expressed FN3028-S Chr9 9092001 9193000 0 0 Deletion 100999 LOC_Os09g15060 expressed protein FN3028-S Chr9 9092001 9193000 0 0 Deletion 100999 LOC_Os09g15070 expressed protein FN3028-S Chr9 9092001 9193000 0 0 Deletion 100999 LOC_Os09g15090 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3028-S Chr9 9092001 9193000 0 0 Deletion 100999 LOC_Os09g15100 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 9092001 9193000 0 0 Deletion 100999 LOC_Os09g15120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr9 9092001 9193000 0 0 Deletion 100999 LOC_Os09g15130 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3028-S Chr9 9092001 9193000 0 0 Deletion 100999 LOC_Os09g15140 retrotransposon protein, putative, unclassified, expressed FN3028-S Chr9 9945001 9961000 0 0 Deletion 15999 LOC_Os09g16300 expressed protein FN3028-S Chr9 9945001 9961000 0 0 Deletion 15999 LOC_Os09g16530 transposon protein, putative, unclassified, expressed