FN3033-S Chr1 18277414 18277414 0 0 Insertion 20 intron_variant HET FN3033-S Chr1 18288964 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3033-S Chr1 18621509 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3033-S Chr1 26418162 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3033-S Chr1 28198570 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3033-S Chr1 31139013 31139013 0 0 Insertion 1 upstream_gene_variant HET FN3033-S Chr1 34049175 34049176 0 0 Deletion 1 upstream_gene_variant HET FN3033-S Chr1 34537978 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3033-S Chr1 34537980 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3033-S Chr1 34537993 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3033-S Chr1 36337021 36337021 0 0 Insertion 2 upstream_gene_variant HET FN3033-S Chr1 38551352 38553087 0 0 Inversion 1735 FN3033-S Chr1 39383077 39383077 0 0 Insertion 1 upstream_gene_variant HET FN3033-S Chr1 4106497 4106513 0 0 Deletion 16 INTERGENIC HET FN3033-S Chr1 8612246 8612246 0 0 Insertion 2 upstream_gene_variant HET FN3033-S Chr10 11140452 11140452 0 0 Insertion 1 intergenic_region HET FN3033-S Chr10 11427416 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3033-S Chr10 22625204 22625204 0 0 Insertion 2 upstream_gene_variant HET FN3033-S Chr10 23013436 23013436 0 0 Insertion 12 upstream_gene_variant HET FN3033-S Chr10 6479811 6479812 0 0 Deletion 1 upstream_gene_variant HET FN3033-S Chr10 6931474 6931474 0 0 Insertion 1 upstream_gene_variant HET FN3033-S Chr11 14358048 14358049 0 0 Deletion 1 frameshift_variant HET LOC_Os11g25200 transposon protein, putative, CACTA, En/Spm sub-class FN3033-S Chr11 16179152 16179236 0 0 Deletion 84 upstream_gene_variant HET FN3033-S Chr11 16179161 16179187 0 0 Deletion 26 upstream_gene_variant HET FN3033-S Chr11 2621675 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g05720 retrotransposon protein, putative, unclassified, expressed FN3033-S Chr11 5129001 5167000 0 0 Deletion 37999 LOC_Os11g09600 OsFBX405 - F-box domain containing protein, expressed FN3033-S Chr11 5129001 5167000 0 0 Deletion 37999 LOC_Os11g09610 hypothetical protein FN3033-S Chr11 5129001 5167000 0 0 Deletion 37999 LOC_Os11g09630 OsFBX407 - F-box domain containing protein, expressed FN3033-S Chr11 5129001 5167000 0 0 Deletion 37999 LOC_Os11g09640 OsFBX408 - F-box domain containing protein, expressed FN3033-S Chr11 5129001 5167000 0 0 Deletion 37999 LOC_Os11g09650 retrotransposon protein, putative, unclassified FN3033-S Chr11 5129001 5167000 0 0 Deletion 37999 LOC_Os11g09660 retrotransposon protein, putative, unclassified, expressed FN3033-S Chr11 5129001 5167000 0 0 Deletion 37999 LOC_Os11g09670 OsFBX409 - F-box domain containing protein, expressed FN3033-S Chr11 5129001 5167000 0 0 Deletion 37999 LOC_Os11g10250 expressed protein FN3033-S Chr11 904712 904728 0 0 Deletion 16 upstream_gene_variant HET FN3033-S Chr12 1990486 G-A 0 0 Single Base Substitution 0 INTRON HET FN3033-S Chr12 2091194 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3033-S Chr12 2091213 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3033-S Chr12 21744241 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3033-S Chr12 24805609 24805610 0 0 Deletion 1 intergenic_region HET FN3033-S Chr12 27020465 Chr10 21613382 0 Translocation 0 LOC_Os10g40324 expressed protein FN3033-S Chr12 9705869 9705870 0 0 Deletion 1 upstream_gene_variant HET FN3033-S Chr2 15276145 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN3033-S Chr2 15276146 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN3033-S Chr2 15296576 15296579 0 0 Deletion 3 INTRON HET FN3033-S Chr2 33006858 33006860 0 0 Deletion 2 INTERGENIC HET FN3033-S Chr2 34727471 34727475 0 0 Deletion 4 frameshift_variant HET LOC_Os02g56640 retrotransposon protein, putative, unclassified, expressed FN3033-S Chr2 7570970 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3033-S Chr3 11458164 11458198 0 0 Deletion 34 upstream_gene_variant HET FN3033-S Chr3 14809336 14809337 0 0 Deletion 1 frameshift_variant HET LOC_Os03g25890 retrotransposon protein, putative, unclassified, expressed FN3033-S Chr3 17598819 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3033-S Chr3 17954274 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3033-S Chr3 18608704 18608712 0 0 Deletion 8 upstream_gene_variant HET FN3033-S Chr3 22607473 22607473 0 0 Insertion 12 upstream_gene_variant HET FN3033-S Chr3 2404430 2404432 0 0 Deletion 2 upstream_gene_variant HET FN3033-S Chr3 30188330 A-G 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN3033-S Chr3 30815278 30815278 0 0 Insertion 4 INTERGENIC HET FN3033-S Chr3 31280028 31280028 0 0 Insertion 10 upstream_gene_variant HET FN3033-S Chr3 31563484 31563485 0 0 Deletion 1 frameshift_variant HET LOC_Os03g55480 retrotransposon protein, putative, unclassified, expressed FN3033-S Chr3 34061138 34061155 0 0 Deletion 17 upstream_gene_variant HET FN3033-S Chr3 35328950 35329042 0 0 Deletion 92 upstream_gene_variant HET FN3033-S Chr3 6973619 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3033-S Chr3 8333095 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3033-S Chr4 14111089 14111090 0 0 Deletion 1 intergenic_region HET FN3033-S Chr4 17512339 17512339 0 0 Insertion 1 upstream_gene_variant HET FN3033-S Chr4 20546191 20546192 0 0 Deletion 1 INTERGENIC HOMO FN3033-S Chr4 21362561 21362569 0 0 Deletion 8 INTRON HET FN3033-S Chr4 24429411 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3033-S Chr4 30726 30728 0 0 Deletion 2 upstream_gene_variant HET FN3033-S Chr4 35493094 35493100 0 0 Deletion 6 intergenic_region HET FN3033-S Chr4 5345561 5345573 0 0 Deletion 12 disruptive_inframe_deletion HET LOC_Os04g09940 retrotransposon protein, putative, unclassified FN3033-S Chr4 5453520 5453520 0 0 Insertion 4 frameshift_variant HET LOC_Os04g10100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3033-S Chr5 10152588 10152588 0 0 Insertion 1 upstream_gene_variant HET FN3033-S Chr5 12140270 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3033-S Chr5 14189946 14190007 0 0 Deletion 61 upstream_gene_variant HET FN3033-S Chr5 14801228 G-C 0 0 Single Base Substitution 0 INTRON HOMO FN3033-S Chr5 169904 169904 0 0 Insertion 3 INTERGENIC HET FN3033-S Chr5 17212235 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN3033-S Chr5 17212236 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3033-S Chr5 2841477 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3033-S Chr5 6779328 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3033-S Chr5 7413933 7413933 0 0 Insertion 79 upstream_gene_variant HET FN3033-S Chr5 7853811 7853813 0 0 Deletion 2 INTRON HOMO FN3033-S Chr5 9504585 9504585 0 0 Insertion 1 downstream_gene_variant HET FN3033-S Chr6 12165467 12165468 0 0 Deletion 1 upstream_gene_variant HET FN3033-S Chr6 12598601 Chr4 3152664 0 Translocation 0 FN3033-S Chr6 22249449 Chr4 20828281 0 Translocation 0 FN3033-S Chr6 8656151 8656151 0 0 Insertion 24 downstream_gene_variant HET FN3033-S Chr7 10587973 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3033-S Chr7 11399650 11399650 0 0 Insertion 13 frameshift_variant HET LOC_Os07g19250 transposon protein, putative, unclassified FN3033-S Chr7 12175990 12175991 0 0 Deletion 1 intergenic_region HET FN3033-S Chr7 17617229 17617229 0 0 Insertion 90 intergenic_region HET FN3033-S Chr7 23837737 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3033-S Chr7 6072669 6072669 0 0 Insertion 2 downstream_gene_variant HET FN3033-S Chr7 6384552 6384554 0 0 Deletion 2 upstream_gene_variant HET FN3033-S Chr7 7576079 7576170 0 0 Deletion 91 upstream_gene_variant HET FN3033-S Chr8 12575994 12575994 0 0 Insertion 1 downstream_gene_variant HET FN3033-S Chr8 13439453 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3033-S Chr8 18205386 18205386 0 0 Insertion 6 intergenic_region HET FN3033-S Chr8 24834151 24834151 0 0 Insertion 2 upstream_gene_variant HET FN3033-S Chr8 25351287 25351292 0 0 Deletion 5 INTERGENIC HOMO FN3033-S Chr8 27746761 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3033-S Chr8 6836488 6836497 0 0 Deletion 9 INTERGENIC HOMO FN3033-S Chr9 2208603 T-C 0 0 Single Base Substitution 0 INTRON HET FN3033-S Chr9 2421331 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g04540 retrotransposon protein, putative, unclassified, expressed FN3033-S Chr9 2748231 2748246 0 0 Deletion 15 inframe_deletion HET LOC_Os09g05120 retrotransposon, putative, centromere-specific, expressed FN3033-S Chr9 4819910 4819911 0 0 Deletion 1 downstream_gene_variant HET FN3033-S Chr9 5755891 5755892 0 0 Deletion 1 upstream_gene_variant HET