FN3058-S Chr1 12684453 12684475 0 0 Insertion 22 HET FN3058-S Chr1 15855451 15855475 0 0 Deletion 24 HET FN3058-S Chr1 21525133 A-G 0 0 Single Base Substitution 0 HET FN3058-S Chr1 22406997 22406999 0 0 Deletion 2 frameshift_variant HET LOC_Os01g39730 retrotransposon protein, putative, unclassified, expressed FN3058-S Chr1 41140226 41522045 0 0 Inversion 0 LOC_Os01g71080 xylanase inhibitor, putative, expressed FN3058-S Chr10 19270705 19271149 0 0 Inversion 0 FN3058-S Chr10 22221779 22221780 0 0 Deletion 1 frameshift_variant HET LOC_Os10g41340 palmitoyl-protein thioesterase 1 precursor, putative, expressed FN3058-S Chr10 3200903 3200913 0 0 Deletion 10 HET FN3058-S Chr10 8550255 8550262 0 0 Deletion 7 frameshift_variant Homo LOC_Os10g17070 retrotransposon protein, putative, unclassified, expressed FN3058-S Chr11 14787707 14787708 0 0 Deletion 1 HET FN3058-S Chr11 22270287 G-T 0 0 Single Base Substitution 0 Homo FN3058-S Chr11 9787815 G-A 0 0 Single Base Substitution 0 HET FN3058-S Chr12 1359054 C-T 0 0 Single Base Substitution 0 HET FN3058-S Chr12 24408202 C-T 0 0 Single Base Substitution 0 HET FN3058-S Chr12 57419 57421 0 0 Insertion 2 HET FN3058-S Chr2 10666626 C-T 0 0 Single Base Substitution 0 HET FN3058-S Chr2 29232091 29232094 0 0 Deletion 3 HET FN3058-S Chr3 1183129 1183130 0 0 Insertion 1 HET FN3058-S Chr3 17944944 C-T 0 0 Single Base Substitution 0 HET FN3058-S Chr3 19748915 C-G 0 0 Single Base Substitution 0 HET FN3058-S Chr3 20376327 G-A 0 0 Single Base Substitution 0 HET FN3058-S Chr3 25354383 Chr1 32550341 0 Translocation 0 FN3058-S Chr3 29246527 29246555 0 0 Deletion 28 Homo FN3058-S Chr3 30921528 C-A 0 0 Single Base Substitution 0 HET FN3058-S Chr3 32260515 32260533 0 0 Deletion 18 HET FN3058-S Chr3 33252001 33331000 0 0 Deletion 78999 LOC_Os03g58364 hypothetical protein FN3058-S Chr3 33252001 33331000 0 0 Deletion 78999 LOC_Os03g58372 expressed protein FN3058-S Chr3 33252001 33331000 0 0 Deletion 78999 LOC_Os03g58380 aldehyde oxidase 2, putative, expressed FN3058-S Chr3 33252001 33331000 0 0 Deletion 78999 LOC_Os03g58390 zinc finger, C3HC4 type domain containing protein, expressed FN3058-S Chr3 33252001 33331000 0 0 Deletion 78999 LOC_Os03g58400 C-5 cytosine-specific DNA methylase, putative, expressed FN3058-S Chr3 33252001 33331000 0 0 Deletion 78999 LOC_Os03g58410 prenylated rab acceptor, putative, expressed FN3058-S Chr3 33252001 33331000 0 0 Deletion 78999 LOC_Os03g58420 WRKY6, expressed FN3058-S Chr3 33252001 33331000 0 0 Deletion 78999 LOC_Os03g58430 40S ribosomal protein S15, putative, expressed FN3058-S Chr3 33252001 33331000 0 0 Deletion 78999 LOC_Os03g58450 expressed protein FN3058-S Chr3 33252001 33331000 0 0 Deletion 78999 LOC_Os03g58470 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3058-S Chr3 33252001 33331000 0 0 Deletion 78999 LOC_Os03g58480 seed specific protein Bn15D14A, putative, expressed FN3058-S Chr3 33252001 33331000 0 0 Deletion 78999 LOC_Os03g58490 DUF593 domain containing protein, expressed FN3058-S Chr3 33252001 33331000 0 0 Deletion 78999 LOC_Os03g58500 expressed protein FN3058-S Chr3 33252001 33331000 0 0 Deletion 78999 LOC_Os03g58510 expressed protein FN3058-S Chr3 33252001 33331000 0 0 Deletion 78999 LOC_Os03g58520 green ripe-like, putative, expressed FN3058-S Chr3 33252001 33331000 0 0 Deletion 78999 LOC_Os03g58530 ES43 protein, putative, expressed FN3058-S Chr3 3708508 A-T 0 0 Single Base Substitution 0 HET FN3058-S Chr3 5528095 G-A 0 0 Single Base Substitution 0 HET FN3058-S Chr4 11896368 C-G 0 0 Single Base Substitution 0 HET FN3058-S Chr4 1515001 1580000 0 0 Deletion 64999 LOC_Os04g03510 expressed protein FN3058-S Chr4 1515001 1580000 0 0 Deletion 64999 LOC_Os04g03520 expressed protein FN3058-S Chr4 1515001 1580000 0 0 Deletion 64999 LOC_Os04g03530 cysteine-rich receptor-like protein kinase 37 precursor, putative, expressed FN3058-S Chr4 1515001 1580000 0 0 Deletion 64999 LOC_Os04g03550 retrotransposon protein, putative, unclassified, expressed FN3058-S Chr4 1515001 1580000 0 0 Deletion 64999 LOC_Os04g03560 retrotransposon protein, putative, unclassified, expressed FN3058-S Chr4 1515001 1580000 0 0 Deletion 64999 LOC_Os04g03579 protein kinase, putative, expressed FN3058-S Chr4 1515001 1580000 0 0 Deletion 64999 LOC_Os04g03600 retrotransposon protein, putative, unclassified, expressed FN3058-S Chr4 1515001 1580000 0 0 Deletion 64999 LOC_Os04g03610 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3058-S Chr4 1585001 1741000 0 0 Deletion 155999 LOC_Os04g03630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3058-S Chr4 1585001 1741000 0 0 Deletion 155999 LOC_Os04g03640 retrotransposon protein, putative, Ty1-copia subclass FN3058-S Chr4 1585001 1741000 0 0 Deletion 155999 LOC_Os04g03650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3058-S Chr4 1585001 1741000 0 0 Deletion 155999 LOC_Os04g03660 expressed protein FN3058-S Chr4 1585001 1741000 0 0 Deletion 155999 LOC_Os04g03680 transposon protein, putative, CACTA, En/Spm sub-class FN3058-S Chr4 1585001 1741000 0 0 Deletion 155999 LOC_Os04g03690 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3058-S Chr4 1585001 1741000 0 0 Deletion 155999 LOC_Os04g03700 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3058-S Chr4 1585001 1741000 0 0 Deletion 155999 LOC_Os04g03710 OsSub36 - Putative Subtilisin homologue, expressed FN3058-S Chr4 1585001 1741000 0 0 Deletion 155999 LOC_Os04g03720 retrotransposon protein, putative, unclassified, expressed FN3058-S Chr4 1585001 1741000 0 0 Deletion 155999 LOC_Os04g03730 retrotransposon protein, putative, unclassified, expressed FN3058-S Chr4 1585001 1741000 0 0 Deletion 155999 LOC_Os04g03740 expressed protein FN3058-S Chr4 1585001 1741000 0 0 Deletion 155999 LOC_Os04g03760 expressed protein FN3058-S Chr4 1585001 1741000 0 0 Deletion 155999 LOC_Os04g03780 retrotransposon protein, putative, unclassified FN3058-S Chr4 1585001 1741000 0 0 Deletion 155999 LOC_Os04g03790 retrotransposon protein, putative, unclassified, expressed FN3058-S Chr4 1585001 1741000 0 0 Deletion 155999 LOC_Os04g03796 OsSub37 - Putative Subtilisin homologue, expressed FN3058-S Chr4 1585001 1741000 0 0 Deletion 155999 LOC_Os04g03810 OsSub38 - Putative Subtilisin homologue, expressed FN3058-S Chr4 1585001 1741000 0 0 Deletion 155999 LOC_Os04g03820 expressed protein FN3058-S Chr4 1585001 1741000 0 0 Deletion 155999 LOC_Os04g03830 OsWAK29 - OsWAK receptor-like protein kinase, expressed FN3058-S Chr4 1585001 1741000 0 0 Deletion 155999 LOC_Os04g03840 retrotransposon protein, putative, unclassified FN3058-S Chr4 1585001 1741000 0 0 Deletion 155999 LOC_Os04g03850 OsSub39 - Putative Subtilisin homologue, expressed FN3058-S Chr4 16876224 T-A 0 0 Single Base Substitution 0 HET FN3058-S Chr4 17196609 17196616 0 0 Deletion 7 HET FN3058-S Chr4 19447001 A-C 0 0 Single Base Substitution 0 HET FN3058-S Chr4 25850415 26147765 0 0 Inversion 0 FN3058-S Chr4 25850427 26147767 0 0 Inversion 0 FN3058-S Chr4 29025993 29026003 0 0 Deletion 10 HET FN3058-S Chr4 3276458 3276461 0 0 Deletion 3 Homo FN3058-S Chr4 3906948 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g07340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3058-S Chr4 7545558 Chr1 32129092 0 Translocation 0 LOC_Os04g13530 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed FN3058-S Chr5 10457224 G-T 0 0 Single Base Substitution 0 HET FN3058-S Chr5 15067657 C-T 0 0 Single Base Substitution 0 HET FN3058-S Chr5 19994888 20590531 0 0 Inversion 0 FN3058-S Chr5 19994888 20590531 0 0 Inversion 0 LOC_Os05g34700 GDSL-like lipase/acylhydrolase, putative, expressed FN3058-S Chr5 19994910 20590533 0 0 Inversion 0 FN3058-S Chr5 19994910 20590533 0 0 Inversion 0 LOC_Os05g34700 GDSL-like lipase/acylhydrolase, putative, expressed FN3058-S Chr5 20090488 20090490 0 0 Insertion 2 HET FN3058-S Chr5 22101000 22101010 0 0 Deletion 10 frameshift_variant Homo LOC_Os05g37750 retrotransposon protein, putative, unclassified, expressed FN3058-S Chr5 277569 277572 0 0 Insertion 3 HET FN3058-S Chr6 11195517 C-T 0 0 Single Base Substitution 0 Homo FN3058-S Chr6 15609351 15609354 0 0 Deletion 3 Homo FN3058-S Chr6 21857520 G-T 0 0 Single Base Substitution 0 HET FN3058-S Chr6 23707 Chr1 17266159 0 Translocation 0 LOC_Os01g31580 BZIP protein, putative, expressed FN3058-S Chr6 23707 Chr1 17266159 0 Translocation 0 LOC_Os06g01040 retrotransposon protein, putative, unclassified, expressed FN3058-S Chr6 23994 Chr1 17266162 0 Translocation 0 LOC_Os01g31580 BZIP protein, putative, expressed FN3058-S Chr6 23994 Chr1 17266162 0 Translocation 0 LOC_Os06g01040 retrotransposon protein, putative, unclassified, expressed FN3058-S Chr6 26937172 26937173 0 0 Deletion 1 HET FN3058-S Chr6 30052106 30052114 0 0 Deletion 8 frameshift_variant HET LOC_Os06g49660 transferase family protein, putative, expressed FN3058-S Chr7 14683540 14683542 0 0 Deletion 2 HET FN3058-S Chr7 18397932 C-T 0 0 Single Base Substitution 0 HET FN3058-S Chr7 22348439 22348441 0 0 Deletion 2 HET FN3058-S Chr7 27234228 Chr1 5361945 0 Translocation 0 LOC_Os01g10195 expressed protein FN3058-S Chr7 27234228 Chr1 5361945 0 Translocation 0 LOC_Os07g45620 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3058-S Chr7 5937469 5937476 0 0 Deletion 7 HET FN3058-S Chr8 1889224 C-T 0 0 Single Base Substitution 0 HET FN3058-S Chr8 27753338 27753339 0 0 Deletion 1 Homo FN3058-S Chr8 9329791 T-C 0 0 Single Base Substitution 0 Homo FN3058-S Chr9 15074541 Chr6 4406867 0 Translocation 0 FN3058-S Chr9 16146205 16146219 0 0 Insertion 14 HET FN3058-S Chr9 17273348 G-A 0 0 Single Base Substitution 0 HET FN3058-S Chr9 18400114 18400115 0 0 Deletion 1 Homo FN3058-S Chr9 19432261 19432274 0 0 Deletion 13 Homo FN3058-S Chr9 21618822 21618824 0 0 Insertion 2 HET