FN3067-S Chr1 14028969 14028970 0 0 Deletion 1 upstream_gene_variant HET FN3067-S Chr1 14939001 14949000 0 0 Deletion 9999 LOC_Os01g26350 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr1 14939001 14949000 0 0 Deletion 9999 LOC_Os01g27449 expressed protein FN3067-S Chr1 15894423 15894424 0 0 Deletion 1 intron_variant HET FN3067-S Chr1 18899009 18899010 0 0 Deletion 1 upstream_gene_variant HET FN3067-S Chr1 20636001 20659000 0 0 Deletion 22999 LOC_Os01g37000 carboxyl-terminal peptidase, putative, expressed FN3067-S Chr1 20636001 20659000 0 0 Deletion 22999 LOC_Os01g37020 carboxyl-terminal peptidase, putative, expressed FN3067-S Chr1 20636001 20659000 0 0 Deletion 22999 LOC_Os01g37030 conserved hypothetical protein FN3067-S Chr1 21005996 21005996 0 0 Insertion 1 upstream_gene_variant HET FN3067-S Chr1 32342484 32342485 0 0 Deletion 1 INTERGENIC HOMO FN3067-S Chr1 38652064 38652072 0 0 Deletion 8 INTRON HOMO FN3067-S Chr1 40346001 40366000 0 0 Deletion 19999 LOC_Os01g70940 potassium transporter, putative, expressed FN3067-S Chr1 5189001 5201000 0 0 Deletion 11999 LOC_Os01g09980 expressed protein FN3067-S Chr1 5189001 5201000 0 0 Deletion 11999 LOC_Os01g10700 D-mannose binding lectin family protein, expressed FN3067-S Chr1 9548001 9560000 0 0 Deletion 11999 FN3067-S Chr10 1022001 1039000 0 0 Deletion 16999 LOC_Os10g02650 PPR repeat containing protein, expressed FN3067-S Chr10 1022001 1039000 0 0 Deletion 16999 LOC_Os10g04674 disease resistance protein RPM1, putative, expressed FN3067-S Chr10 13223458 13223469 0 0 Deletion 11 INTRON HOMO FN3067-S Chr10 15151363 Chr5 26317302 0 Translocation 0 LOC_Os10g29090 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr10 15151378 Chr1 3134836 0 Translocation 0 LOC_Os01g06650 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr10 15151378 Chr1 3134836 0 Translocation 0 LOC_Os10g29090 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr10 17340129 17340139 0 0 Deletion 10 INTERGENIC HOMO FN3067-S Chr10 21537399 21537407 0 0 Deletion 8 INTRON HOMO FN3067-S Chr10 4486016 4486016 0 0 Insertion 1 downstream_gene_variant HET FN3067-S Chr10 5513261 5513262 0 0 Deletion 1 upstream_gene_variant HET FN3067-S Chr10 6198001 6221000 0 0 Deletion 22999 LOC_Os10g11190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr10 6198001 6221000 0 0 Deletion 22999 LOC_Os10g11200 aminotransferase, classes I and II, domain containing protein, expressed FN3067-S Chr10 6198001 6221000 0 0 Deletion 22999 LOC_Os10g11210 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3067-S Chr10 6198001 6221000 0 0 Deletion 22999 LOC_Os10g11330 transposon protein, putative, unclassified FN3067-S Chr10 8778262 Chr9 10566383 0 Translocation 0 LOC_Os09g17210 retrotransposon protein, putative, unclassified FN3067-S Chr10 8778262 Chr9 10566383 0 Translocation 0 LOC_Os10g17410 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr11 1203001 1227000 0 0 Deletion 23999 LOC_Os11g03280 transposon protein, putative, unclassified, expressed FN3067-S Chr11 1203001 1227000 0 0 Deletion 23999 LOC_Os11g03290 nucleoside-triphosphatase, putative, expressed FN3067-S Chr11 1203001 1227000 0 0 Deletion 23999 LOC_Os11g05200 zinc finger, C3HC4 type domain containing protein, expressed FN3067-S Chr11 14641001 14664000 0 0 Deletion 22999 LOC_Os11g25670 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr11 14641001 14664000 0 0 Deletion 22999 LOC_Os11g25680 retrotransposon protein, putative, unclassified FN3067-S Chr11 14641001 14664000 0 0 Deletion 22999 LOC_Os11g25690 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr11 14641001 14664000 0 0 Deletion 22999 LOC_Os11g25700 tropinone reductase, putative, expressed FN3067-S Chr11 14641001 14664000 0 0 Deletion 22999 LOC_Os11g25720 cytokinin-N-glucosyltransferase 1, putative, expressed FN3067-S Chr11 14641001 14664000 0 0 Deletion 22999 LOC_Os11g26240 transposon protein, putative, CACTA, En/Spm sub-class FN3067-S Chr11 14801621 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3067-S Chr11 15897955 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3067-S Chr11 20488457 20488460 0 0 Deletion 3 INTERGENIC HOMO FN3067-S Chr11 24593816 Chr6 26017510 0 Translocation 0 FN3067-S Chr11 24677001 24698000 0 0 Deletion 20999 LOC_Os11g41190 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr11 24677001 24698000 0 0 Deletion 20999 LOC_Os11g41210 disease resistance protein RPM1, putative, expressed FN3067-S Chr11 25740024 25740027 0 0 Deletion 3 upstream_gene_variant HET FN3067-S Chr11 4650373 4650373 0 0 Insertion 10 upstream_gene_variant HET FN3067-S Chr11 516904 Chr7 11770274 0 Translocation 0 FN3067-S Chr11 7599001 7612000 0 0 Deletion 12999 LOC_Os11g13900 expressed protein FN3067-S Chr11 8196161 Chr7 11141499 0 Translocation 0 FN3067-S Chr11 9656001 9669000 0 0 Deletion 12999 LOC_Os11g17320 hypothetical protein FN3067-S Chr11 9656001 9669000 0 0 Deletion 12999 LOC_Os11g17330 stripe rust resistance protein Yr10, putative, expressed FN3067-S Chr11 9712001 9726000 0 0 Deletion 13999 LOC_Os11g17430 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr11 9712001 9726000 0 0 Deletion 13999 LOC_Os11g17440 enoyl-CoA hydratase/isomerase family protein, expressed FN3067-S Chr11 9712001 9726000 0 0 Deletion 13999 LOC_Os11g17830 transposon protein, putative, unclassified, expressed FN3067-S Chr12 12616516 12616516 0 0 Insertion 1 upstream_gene_variant HET FN3067-S Chr12 13377146 13377231 0 0 Deletion 85 upstream_gene_variant HET FN3067-S Chr12 17347650 Chr4 2085444 0 Translocation 0 FN3067-S Chr12 179001 190000 0 0 Deletion 10999 LOC_Os12g01330 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr12 179001 190000 0 0 Deletion 10999 LOC_Os12g02094 saposin-like type B, region 1 family protein, putative, expressed FN3067-S Chr12 2005847 Chr2 19681000 0 Translocation 0 FN3067-S Chr12 22116317 22116317 0 0 Insertion 4 intergenic_region HET FN3067-S Chr12 26032001 26047000 0 0 Deletion 14999 LOC_Os12g41990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3067-S Chr12 26032001 26047000 0 0 Deletion 14999 LOC_Os12g42000 expressed protein FN3067-S Chr12 26032001 26047000 0 0 Deletion 14999 LOC_Os12g42010 lipase class 3 family protein, putative, expressed FN3067-S Chr12 26032001 26047000 0 0 Deletion 14999 LOC_Os12g44030 purple acid phosphatase precursor, putative, expressed FN3067-S Chr12 6229548 Chr2 27057759 0 Translocation 0 FN3067-S Chr12 7626001 7637000 0 0 Deletion 10999 LOC_Os12g14260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr2 1418001 1429000 0 0 Deletion 10999 LOC_Os02g03500 expressed protein FN3067-S Chr2 1418001 1429000 0 0 Deletion 10999 LOC_Os02g03510 fibroin heavy chain precursor, putative, expressed FN3067-S Chr2 1418001 1429000 0 0 Deletion 10999 LOC_Os02g03850 glycosyltransferase, putative, expressed FN3067-S Chr2 14391395 14391397 0 0 Deletion 2 FRAME_SHIFT HOMO LOC_Os02g24800 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr2 14700001 14731000 0 0 Deletion 30999 LOC_Os02g25260 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr2 14700001 14731000 0 0 Deletion 30999 LOC_Os02g25270 expressed protein FN3067-S Chr2 14700001 14731000 0 0 Deletion 30999 LOC_Os02g25280 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3067-S Chr2 14700001 14731000 0 0 Deletion 30999 LOC_Os02g25430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr2 21204001 21214000 0 0 Deletion 9999 LOC_Os02g35290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr2 21204001 21214000 0 0 Deletion 9999 LOC_Os02g36619 exo70 exocyst complex subunit, putative, expressed FN3067-S Chr2 22118001 22141000 0 0 Deletion 22999 LOC_Os02g36650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr2 22118001 22141000 0 0 Deletion 22999 LOC_Os02g36660 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr2 22118001 22141000 0 0 Deletion 22999 LOC_Os02g36670 expressed protein FN3067-S Chr2 22118001 22141000 0 0 Deletion 22999 LOC_Os02g36680 expressed protein FN3067-S Chr2 22118001 22141000 0 0 Deletion 22999 LOC_Os02g36924 OsMADS27 - MADS-box family gene with MIKCc type-box, expressed FN3067-S Chr3 11485531 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3067-S Chr3 15805001 15824000 0 0 Deletion 18999 LOC_Os03g27570 expressed protein FN3067-S Chr3 15805001 15824000 0 0 Deletion 18999 LOC_Os03g27580 expressed protein FN3067-S Chr3 15805001 15824000 0 0 Deletion 18999 LOC_Os03g27590 OsSCP18 - Putative Serine Carboxypeptidase homologue, expressed FN3067-S Chr3 15805001 15824000 0 0 Deletion 18999 LOC_Os03g27690 expressed protein FN3067-S Chr3 18069001 18079000 0 0 Deletion 9999 LOC_Os03g31650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr3 18069001 18079000 0 0 Deletion 9999 LOC_Os03g33012 WRKY81, expressed FN3067-S Chr3 1959977 1959980 0 0 Deletion 3 INTERGENIC HET FN3067-S Chr3 19722859 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3067-S Chr3 22018408 C-A 0 0 Single Base Substitution 0 INTRON HET FN3067-S Chr3 22353001 22366000 0 0 Deletion 12999 LOC_Os03g40220 retrotransposon protein, putative, unclassified FN3067-S Chr3 22353001 22366000 0 0 Deletion 12999 LOC_Os03g40230 expressed protein FN3067-S Chr3 22353001 22366000 0 0 Deletion 12999 LOC_Os03g40240 hypothetical protein FN3067-S Chr3 22353001 22366000 0 0 Deletion 12999 LOC_Os03g40630 transposon protein, putative, unclassified FN3067-S Chr3 22753954 Chr1 37534642 0 Translocation 0 FN3067-S Chr3 22753970 Chr1 38541764 0 Translocation 0 FN3067-S Chr3 25084805 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3067-S Chr3 26243809 26243811 0 0 Deletion 2 UTR_5_PRIME HOMO FN3067-S Chr3 27994527 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3067-S Chr3 30647832 30647838 0 0 Deletion 6 INTERGENIC HET FN3067-S Chr3 30647846 30647852 0 0 Deletion 6 INTERGENIC HET FN3067-S Chr3 34494609 A-G 0 0 Single Base Substitution 0 INTRON HET FN3067-S Chr3 34597026 35113061 0 0 Inversion 516035 FN3067-S Chr3 7911689 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3067-S Chr4 10244001 10266000 0 0 Deletion 21999 LOC_Os04g18550 expressed protein FN3067-S Chr4 10244001 10266000 0 0 Deletion 21999 LOC_Os04g18559 retrotransposon protein, putative, unclassified FN3067-S Chr4 10244001 10266000 0 0 Deletion 21999 LOC_Os04g18570 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr4 10244001 10266000 0 0 Deletion 21999 LOC_Os04g18580 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3067-S Chr4 10244001 10266000 0 0 Deletion 21999 LOC_Os04g18860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr4 10862001 10878000 0 0 Deletion 15999 LOC_Os04g19520 retrotransposon protein, putative, Ty3-gypsy subclass FN3067-S Chr4 10862001 10878000 0 0 Deletion 15999 LOC_Os04g19530 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr4 10862001 10878000 0 0 Deletion 15999 LOC_Os04g19540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr4 10862001 10878000 0 0 Deletion 15999 LOC_Os04g19940 retrotransposon protein, putative, Ty1-copia subclass FN3067-S Chr4 12071001 12092000 0 0 Deletion 20999 LOC_Os04g21380 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr4 12071001 12092000 0 0 Deletion 20999 LOC_Os04g21390 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr4 12071001 12092000 0 0 Deletion 20999 LOC_Os04g21400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr4 12071001 12092000 0 0 Deletion 20999 LOC_Os04g21740 expressed protein FN3067-S Chr4 14679624 14679624 0 0 Insertion 2 INTERGENIC HET FN3067-S Chr4 16597001 16626000 0 0 Deletion 28999 LOC_Os04g28120 response regulator receiver domain containing protein, expressed FN3067-S Chr4 16597001 16626000 0 0 Deletion 28999 LOC_Os04g28130 two-component response regulator, putative, expressed FN3067-S Chr4 16597001 16626000 0 0 Deletion 28999 LOC_Os04g28140 conserved hypothetical protein FN3067-S Chr4 16597001 16626000 0 0 Deletion 28999 LOC_Os04g28150 expressed protein FN3067-S Chr4 17451027 17451091 0 0 Deletion 64 upstream_gene_variant HET FN3067-S Chr4 19608791 19608795 0 0 Deletion 4 FRAME_SHIFT HET LOC_Os04g32570 MYB protein, putative, expressed FN3067-S Chr4 21721511 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3067-S Chr4 2863397 2863412 0 0 Deletion 15 intergenic_region HET FN3067-S Chr4 30952304 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3067-S Chr4 33293328 33293370 0 0 Deletion 42 upstream_gene_variant HET FN3067-S Chr4 4021831 4021831 0 0 Insertion 1 upstream_gene_variant HET FN3067-S Chr4 5615001 5629000 0 0 Deletion 13999 LOC_Os04g11165 gamma-thionin family domain containing protein, expressed FN3067-S Chr4 8953683 8953738 0 0 Deletion 55 upstream_gene_variant HET FN3067-S Chr5 10021001 10044000 0 0 Deletion 22999 LOC_Os05g17470 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 10021001 10044000 0 0 Deletion 22999 LOC_Os05g17520 retrotransposon protein, putative, Ty3-gypsy subclass FN3067-S Chr5 10058001 10189000 0 0 Deletion 130999 LOC_Os05g17530 retrotransposon protein, putative, unclassified FN3067-S Chr5 10058001 10189000 0 0 Deletion 130999 LOC_Os05g17540 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr5 10058001 10189000 0 0 Deletion 130999 LOC_Os05g17550 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr5 10058001 10189000 0 0 Deletion 130999 LOC_Os05g17560 retrotransposon protein, putative, Ty3-gypsy subclass FN3067-S Chr5 10058001 10189000 0 0 Deletion 130999 LOC_Os05g17570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 10058001 10189000 0 0 Deletion 130999 LOC_Os05g17580 retrotransposon protein, putative, unclassified FN3067-S Chr5 10058001 10189000 0 0 Deletion 130999 LOC_Os05g17590 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr5 10058001 10189000 0 0 Deletion 130999 LOC_Os05g17604 SHR5-receptor-like kinase, putative, expressed FN3067-S Chr5 10058001 10189000 0 0 Deletion 130999 LOC_Os05g17630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 10058001 10189000 0 0 Deletion 130999 LOC_Os05g17640 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr5 10058001 10189000 0 0 Deletion 130999 LOC_Os05g17650 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr5 10058001 10189000 0 0 Deletion 130999 LOC_Os05g17670 retrotransposon protein, putative, Ty1-copia subclass FN3067-S Chr5 10058001 10189000 0 0 Deletion 130999 LOC_Os05g17680 conserved hypothetical protein FN3067-S Chr5 10058001 10189000 0 0 Deletion 130999 LOC_Os05g17690 expressed protein FN3067-S Chr5 10058001 10189000 0 0 Deletion 130999 LOC_Os05g17700 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr5 10058001 10189000 0 0 Deletion 130999 LOC_Os05g17710 hypothetical protein FN3067-S Chr5 10058001 10189000 0 0 Deletion 130999 LOC_Os05g17750 retrotransposon protein, putative, Ty1-copia subclass FN3067-S Chr5 10201001 10373000 0 0 Deletion 171999 LOC_Os05g17760 retrotransposon protein, putative, Ty3-gypsy subclass FN3067-S Chr5 10201001 10373000 0 0 Deletion 171999 LOC_Os05g17770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 10201001 10373000 0 0 Deletion 171999 LOC_Os05g17780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 10201001 10373000 0 0 Deletion 171999 LOC_Os05g17790 retrotransposon protein, putative, Ty3-gypsy subclass FN3067-S Chr5 10201001 10373000 0 0 Deletion 171999 LOC_Os05g17800 SHR5-receptor-like kinase, putative, expressed FN3067-S Chr5 10201001 10373000 0 0 Deletion 171999 LOC_Os05g17810 SHR5-receptor-like kinase, putative, expressed FN3067-S Chr5 10201001 10373000 0 0 Deletion 171999 LOC_Os05g17820 retrotransposon protein, putative, Ty3-gypsy subclass FN3067-S Chr5 10201001 10373000 0 0 Deletion 171999 LOC_Os05g17830 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr5 10201001 10373000 0 0 Deletion 171999 LOC_Os05g17840 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 10201001 10373000 0 0 Deletion 171999 LOC_Os05g17849 expressed protein FN3067-S Chr5 10201001 10373000 0 0 Deletion 171999 LOC_Os05g17860 retrotransposon protein, putative, unclassified FN3067-S Chr5 10201001 10373000 0 0 Deletion 171999 LOC_Os05g17870 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr5 10201001 10373000 0 0 Deletion 171999 LOC_Os05g17880 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr5 10201001 10373000 0 0 Deletion 171999 LOC_Os05g17890 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr5 10201001 10373000 0 0 Deletion 171999 LOC_Os05g17900 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr5 10201001 10373000 0 0 Deletion 171999 LOC_Os05g17910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 10201001 10373000 0 0 Deletion 171999 LOC_Os05g17920 retrotransposon protein, putative, unclassified FN3067-S Chr5 10201001 10373000 0 0 Deletion 171999 LOC_Os05g17930 retrotransposon protein, putative, unclassified FN3067-S Chr5 10201001 10373000 0 0 Deletion 171999 LOC_Os05g17940 retrotransposon protein, putative, unclassified FN3067-S Chr5 10201001 10373000 0 0 Deletion 171999 LOC_Os05g17950 retrotransposon protein, putative, unclassified FN3067-S Chr5 10201001 10373000 0 0 Deletion 171999 LOC_Os05g17960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 10201001 10373000 0 0 Deletion 171999 LOC_Os05g17970 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr5 10201001 10373000 0 0 Deletion 171999 LOC_Os05g17980 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr5 10201001 10373000 0 0 Deletion 171999 LOC_Os05g17990 expressed protein FN3067-S Chr5 10201001 10373000 0 0 Deletion 171999 LOC_Os05g18000 retrotransposon protein, putative, LINE subclass, expressed FN3067-S Chr5 10201001 10373000 0 0 Deletion 171999 LOC_Os05g18010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 10201001 10373000 0 0 Deletion 171999 LOC_Os05g18030 retrotransposon protein, putative, unclassified FN3067-S Chr5 10292886 10292886 0 0 Insertion 1 downstream_gene_variant HET FN3067-S Chr5 10300460 10300461 0 0 Deletion 1 upstream_gene_variant HET FN3067-S Chr5 10317626 10317626 0 0 Insertion 1 upstream_gene_variant HET FN3067-S Chr5 10317829 10317829 0 0 Insertion 1 upstream_gene_variant HET FN3067-S Chr5 10371168 10371169 0 0 Deletion 1 downstream_gene_variant HET FN3067-S Chr5 10376001 10526000 0 0 Deletion 149999 LOC_Os05g18050 retrotransposon protein, putative, unclassified FN3067-S Chr5 10376001 10526000 0 0 Deletion 149999 LOC_Os05g18060 retrotransposon protein, putative, unclassified FN3067-S Chr5 10376001 10526000 0 0 Deletion 149999 LOC_Os05g18070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 10376001 10526000 0 0 Deletion 149999 LOC_Os05g18080 retrotransposon protein, putative, Ty3-gypsy subclass FN3067-S Chr5 10376001 10526000 0 0 Deletion 149999 LOC_Os05g18090 SHR5-receptor-like kinase, putative, expressed FN3067-S Chr5 10376001 10526000 0 0 Deletion 149999 LOC_Os05g18100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 10376001 10526000 0 0 Deletion 149999 LOC_Os05g18120 expressed protein FN3067-S Chr5 10376001 10526000 0 0 Deletion 149999 LOC_Os05g18130 expressed protein FN3067-S Chr5 10376001 10526000 0 0 Deletion 149999 LOC_Os05g18140 retrotransposon, putative, centromere-specific FN3067-S Chr5 10376001 10526000 0 0 Deletion 149999 LOC_Os05g18150 expressed protein FN3067-S Chr5 10376001 10526000 0 0 Deletion 149999 LOC_Os05g18160 retrotransposon protein, putative, unclassified FN3067-S Chr5 10376001 10526000 0 0 Deletion 149999 LOC_Os05g18170 retrotransposon, putative, centromere-specific, expressed FN3067-S Chr5 10376001 10526000 0 0 Deletion 149999 LOC_Os05g18180 retrotransposon, putative, centromere-specific, expressed FN3067-S Chr5 10376001 10526000 0 0 Deletion 149999 LOC_Os05g18190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 10376001 10526000 0 0 Deletion 149999 LOC_Os05g18200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 10376001 10526000 0 0 Deletion 149999 LOC_Os05g18210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 10376001 10526000 0 0 Deletion 149999 LOC_Os05g18220 retrotransposon protein, putative, unclassified FN3067-S Chr5 10376001 10526000 0 0 Deletion 149999 LOC_Os05g18230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 10376001 10526000 0 0 Deletion 149999 LOC_Os05g18240 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 10376001 10526000 0 0 Deletion 149999 LOC_Os05g18250 retrotransposon, putative, centromere-specific FN3067-S Chr5 10376001 10526000 0 0 Deletion 149999 LOC_Os05g18260 retrotransposon protein, putative, unclassified FN3067-S Chr5 10376001 10526000 0 0 Deletion 149999 LOC_Os05g18270 retrotransposon protein, putative, unclassified FN3067-S Chr5 10376001 10526000 0 0 Deletion 149999 LOC_Os05g18274 expressed protein FN3067-S Chr5 10376001 10526000 0 0 Deletion 149999 LOC_Os05g18400 retrotransposon protein, putative, unclassified FN3067-S Chr5 10431881 10431881 0 0 Insertion 1 downstream_gene_variant HET FN3067-S Chr5 10480302 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3067-S Chr5 10630001 10679000 0 0 Deletion 48999 LOC_Os05g18400 retrotransposon protein, putative, unclassified FN3067-S Chr5 10630001 10679000 0 0 Deletion 48999 LOC_Os05g18410 retrotransposon protein, putative, Ty1-copia subclass FN3067-S Chr5 10630001 10679000 0 0 Deletion 48999 LOC_Os05g18419 retrotransposon, putative, centromere-specific FN3067-S Chr5 10630001 10679000 0 0 Deletion 48999 LOC_Os05g18446 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 10630001 10679000 0 0 Deletion 48999 LOC_Os05g18470 CRAL/TRIO domain containing protein, expressed FN3067-S Chr5 10630001 10679000 0 0 Deletion 48999 LOC_Os05g18480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 10649631 10649632 0 0 Deletion 1 upstream_gene_variant HET FN3067-S Chr5 12628001 12660000 0 0 Deletion 31999 LOC_Os05g22330 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 12628001 12660000 0 0 Deletion 31999 LOC_Os05g22340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 12628001 12660000 0 0 Deletion 31999 LOC_Os05g22350 retrotransposon, putative, centromere-specific, expressed FN3067-S Chr5 12663001 12679000 0 0 Deletion 15999 LOC_Os05g22370 N-acetylglucosaminyl transferase component, putative, expressed FN3067-S Chr5 12663001 12679000 0 0 Deletion 15999 LOC_Os05g22600 expressed protein FN3067-S Chr5 133468 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3067-S Chr5 16690296 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g28500 ubiquitin family protein, putative, expressed FN3067-S Chr5 24451797 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3067-S Chr5 24608300 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3067-S Chr5 5082164 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3067-S Chr5 7229018 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3067-S Chr5 7873001 7888000 0 0 Deletion 14999 LOC_Os05g14110 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr5 7873001 7888000 0 0 Deletion 14999 LOC_Os05g14540 hypothetical protein FN3067-S Chr5 9197001 9214000 0 0 Deletion 16999 LOC_Os05g16270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 9197001 9214000 0 0 Deletion 16999 LOC_Os05g16670 SHR5-receptor-like kinase, putative, expressed FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17130 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17140 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17150 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17170 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17180 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17190 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17200 transposon protein, putative, unclassified FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17210 expressed protein FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17220 retrotransposon protein, putative, unclassified FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17230 conserved hypothetical protein FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17240 retrotransposon protein, putative, unclassified FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17250 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17280 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17290 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17300 expressed protein FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17310 retrotransposon protein, putative, unclassified FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17320 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17330 retrotransposon protein, putative, Ty3-gypsy subclass FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17340 retrotransposon protein, putative, unclassified FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17350 retrotransposon protein, putative, unclassified FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17380 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17390 expressed protein FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17400 retrotransposon, putative, centromere-specific FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17410 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17440 transposon protein, putative, unclassified FN3067-S Chr5 9786001 10016000 0 0 Deletion 229999 LOC_Os05g17460 retrotransposon protein, putative, Ty3-gypsy subclass FN3067-S Chr6 11245776 11245777 0 0 Deletion 1 upstream_gene_variant HET FN3067-S Chr6 12287001 12303000 0 0 Deletion 15999 LOC_Os06g21260 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr6 12287001 12303000 0 0 Deletion 15999 LOC_Os06g21270 glycine rich protein family protein, putative, expressed FN3067-S Chr6 12287001 12303000 0 0 Deletion 15999 LOC_Os06g21280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3067-S Chr6 12287001 12303000 0 0 Deletion 15999 LOC_Os06g22410 expressed protein FN3067-S Chr6 14229001 14241000 0 0 Deletion 11999 FN3067-S Chr6 14781485 14781486 0 0 Deletion 1 frameshift_variant HET LOC_Os06g25270 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3067-S Chr6 24415001 24429000 0 0 Deletion 13999 LOC_Os06g40950 DNA-directed RNA polymerase I subunit RPA1, putative, expressed FN3067-S Chr6 28707105 28707105 0 0 Insertion 1 upstream_gene_variant HET FN3067-S Chr6 29461484 29461487 0 0 Deletion 3 upstream_gene_variant HET FN3067-S Chr7 17734106 17734106 0 0 Insertion 1 downstream_gene_variant HET FN3067-S Chr7 20326483 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3067-S Chr7 20691261 T-C 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3067-S Chr7 23619309 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3067-S Chr7 26891001 26904000 0 0 Deletion 12999 LOC_Os07g45070 FAT domain-containing protein, putative, expressed FN3067-S Chr7 26891001 26904000 0 0 Deletion 12999 LOC_Os07g45074 FAT domain-containing protein, putative, expressed FN3067-S Chr7 26891001 26904000 0 0 Deletion 12999 LOC_Os07g45740 expressed protein FN3067-S Chr7 6160026 6160027 0 0 Deletion 1 upstream_gene_variant HET FN3067-S Chr7 8387001 8402000 0 0 Deletion 14999 LOC_Os07g14710 transposon protein, putative, Mariner sub-class, expressed FN3067-S Chr7 8387001 8402000 0 0 Deletion 14999 LOC_Os07g14720 expressed protein FN3067-S Chr7 8766718 8766718 0 0 Insertion 1 frameshift_variant HET LOC_Os07g15210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr7 9086001 9100000 0 0 Deletion 13999 LOC_Os07g15660 retrotransposon protein, putative, LINE subclass FN3067-S Chr7 9086001 9100000 0 0 Deletion 13999 LOC_Os07g15670 peroxiredoxin, putative, expressed FN3067-S Chr7 9167236 9167237 0 0 Deletion 1 upstream_gene_variant HET FN3067-S Chr7 9892461 9892461 0 0 Insertion 1 intergenic_region HET FN3067-S Chr8 12442705 12442705 0 0 Insertion 1 upstream_gene_variant HET FN3067-S Chr8 14757240 Chr2 31803319 0 Translocation 0 FN3067-S Chr8 14757409 Chr2 31803320 0 Translocation 0 FN3067-S Chr8 14927390 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g24700 expressed protein FN3067-S Chr8 19434238 Chr6 494463 0 Translocation 0 FN3067-S Chr8 22727921 22727923 0 0 Deletion 2 downstream_gene_variant HET FN3067-S Chr8 24923957 24923962 0 0 Deletion 5 upstream_gene_variant HET FN3067-S Chr8 28282533 28282537 0 0 Deletion 4 intergenic_region HET FN3067-S Chr8 5194750 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3067-S Chr8 5529014 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3067-S Chr8 6625934 6625934 0 0 Insertion 1 downstream_gene_variant HET FN3067-S Chr8 8547102 8547102 0 0 Insertion 1 upstream_gene_variant HET FN3067-S Chr9 10294710 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3067-S Chr9 11026001 11053000 0 0 Deletion 26999 LOC_Os09g18010 expressed protein FN3067-S Chr9 11026001 11053000 0 0 Deletion 26999 LOC_Os09g18020 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN3067-S Chr9 12056059 12056059 0 0 Insertion 1 upstream_gene_variant HET FN3067-S Chr9 13930097 13930102 0 0 Deletion 5 INTERGENIC HOMO FN3067-S Chr9 14504962 14504967 0 0 Deletion 5 upstream_gene_variant HET FN3067-S Chr9 2203001 2217000 0 0 Deletion 13999 LOC_Os09g04200 transposon protein, putative, CACTA, En/Spm sub-class FN3067-S Chr9 2203001 2217000 0 0 Deletion 13999 LOC_Os09g04210 hydrolase/ zinc ion binding protein, putative, expressed FN3067-S Chr9 2203001 2217000 0 0 Deletion 13999 LOC_Os09g04600 expressed protein FN3067-S Chr9 2582478 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3067-S Chr9 3297420 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3067-S Chr9 4311001 4327000 0 0 Deletion 15999 LOC_Os09g08350 retrotransposon protein, putative, unclassified, expressed FN3067-S Chr9 4311001 4327000 0 0 Deletion 15999 LOC_Os09g08790 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3067-S Chr9 5260299 5260300 0 0 Deletion 1 frameshift_variant HET LOC_Os09g09720 retrotransposon protein, putative, unclassified FN3067-S Chr9 5480001 5493000 0 0 Deletion 12999 LOC_Os09g10080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3067-S Chr9 5480001 5493000 0 0 Deletion 12999 LOC_Os09g10220 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3067-S Chr9 5768749 5768767 0 0 Deletion 18 upstream_gene_variant HET FN3067-S Chr9 5903001 5912000 0 0 Deletion 8999 LOC_Os09g10830 hypothetical protein FN3067-S Chr9 5903001 5912000 0 0 Deletion 8999 LOC_Os09g11020 NBS-LRR disease resistance protein, putative, expressed FN3067-S Chr9 5920546 5920546 0 0 Insertion 2 SPLICE_SITE_REGION HET FN3067-S Chr9 7607268 7607269 0 0 Deletion 1 upstream_gene_variant HET