FN3085-S Chr1 11539312 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3085-S Chr1 1313385 1313386 0 0 Deletion 1 frameshift_variant HET LOC_Os01g03240 conserved hypothetical protein FN3085-S Chr1 14574548 14574550 0 0 Deletion 2 frameshift_variant HET LOC_Os01g25710 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3085-S Chr1 15369181 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3085-S Chr1 17407415 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3085-S Chr1 18189720 C-T 0 0 Single Base Substitution 0 INTRON HET FN3085-S Chr1 19077681 19077681 0 0 Insertion 4 upstream_gene_variant HET FN3085-S Chr1 27387406 28045183 0 0 Inversion 657777 LOC_Os01g47840 S-locus-like receptor protein kinase, putative, expressed FN3085-S Chr1 28155487 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3085-S Chr1 4555197 4555198 0 0 Deletion 1 upstream_gene_variant HET FN3085-S Chr1 706908 706925 0 0 Deletion 17 upstream_gene_variant HET FN3085-S Chr10 15560826 15560826 0 0 Insertion 1 upstream_gene_variant HET FN3085-S Chr10 15981375 Chr3 6178645 0 Translocation 0 FN3085-S Chr10 164450 164450 0 0 Insertion 1 upstream_gene_variant HET FN3085-S Chr10 18506666 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3085-S Chr10 19991248 20556602 0 0 Inversion 565354 FN3085-S Chr10 19992001 20015000 0 0 Deletion 22999 LOC_Os10g37330 oxidoreductase, aldo/keto reductase family protein, putative, expressed FN3085-S Chr10 19992001 20015000 0 0 Deletion 22999 LOC_Os10g37340 cystathionine gamma-synthase, putative, expressed FN3085-S Chr10 19992001 20015000 0 0 Deletion 22999 LOC_Os10g37350 expressed protein FN3085-S Chr10 19992001 20015000 0 0 Deletion 22999 LOC_Os10g37370 retrotransposon protein, putative, unclassified, expressed FN3085-S Chr10 19992001 20015000 0 0 Deletion 22999 LOC_Os10g37400 DUF538 domain containing protein, putative, expressed FN3085-S Chr10 20017001 20041000 0 0 Deletion 23999 LOC_Os10g37410 TBC domain containing protein, expressed FN3085-S Chr10 20017001 20041000 0 0 Deletion 23999 LOC_Os10g37420 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed FN3085-S Chr10 20017001 20041000 0 0 Deletion 23999 LOC_Os10g37430 expressed protein FN3085-S Chr10 20017001 20041000 0 0 Deletion 23999 LOC_Os10g37440 expressed protein FN3085-S Chr10 20017001 20041000 0 0 Deletion 23999 LOC_Os10g37899 transposon protein, putative, unclassified, expressed FN3085-S Chr10 20040369 Chr1 27384011 0 Translocation 0 FN3085-S Chr10 20041311 Chr1 28045169 0 Translocation 0 FN3085-S Chr10 20041324 20556605 0 0 Inversion 515281 FN3085-S Chr10 202799 Chr1 18687435 0 Translocation 0 FN3085-S Chr10 20738738 20738741 0 0 Deletion 3 upstream_gene_variant HET FN3085-S Chr10 21086097 21086097 0 0 Insertion 1 downstream_gene_variant HET FN3085-S Chr10 21451968 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3085-S Chr10 5092294 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g09440 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3085-S Chr10 6931474 6931474 0 0 Insertion 1 upstream_gene_variant HET FN3085-S Chr11 12039799 12039802 0 0 Deletion 3 downstream_gene_variant HET FN3085-S Chr11 13710945 Chr8 11690102 0 Translocation 0 FN3085-S Chr11 18674820 18674826 0 0 Deletion 6 downstream_gene_variant HET FN3085-S Chr11 25683696 25683696 0 0 Insertion 1 intron_variant HET FN3085-S Chr11 26207283 Chr2 30805327 0 Translocation 0 FN3085-S Chr11 27810238 27810239 0 0 Deletion 1 downstream_gene_variant HET FN3085-S Chr11 357797 357803 0 0 Deletion 6 INTERGENIC HOMO FN3085-S Chr11 3984043 3984044 0 0 Deletion 1 upstream_gene_variant HET FN3085-S Chr11 7587452 G-A 0 0 Single Base Substitution 0 START_GAINED HOMO FN3085-S Chr11 9365055 9365057 0 0 Deletion 2 downstream_gene_variant HET FN3085-S Chr12 10482998 Chr7 29118623 0 Translocation 0 LOC_Os07g48630 ethylene-insensitive 3, putative, expressed FN3085-S Chr12 12289064 12981062 0 0 Inversion 691998 FN3085-S Chr12 12298326 12981254 0 0 Inversion 682928 FN3085-S Chr12 13966775 Chr1 19217178 0 Translocation 0 FN3085-S Chr12 14626560 Chr4 13431729 0 Translocation 0 FN3085-S Chr12 17230069 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3085-S Chr12 17855807 G-A 0 0 Single Base Substitution 0 INTRON HET FN3085-S Chr12 19768863 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3085-S Chr12 19859914 Chr1 29752298 0 Translocation 0 FN3085-S Chr12 2801822 Chr1 18684100 0 Translocation 0 LOC_Os01g33960 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3085-S Chr12 4434650 4434654 0 0 Deletion 4 INTERGENIC HET FN3085-S Chr12 4929122 4929122 0 0 Insertion 1 frameshift_variant HET LOC_Os12g09400 retrotransposon protein, putative, Ty1-copia subclass FN3085-S Chr2 13406045 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3085-S Chr2 14199096 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3085-S Chr2 20265711 20265715 0 0 Deletion 4 intergenic_region HET FN3085-S Chr2 23340124 23340125 0 0 Deletion 1 upstream_gene_variant HET FN3085-S Chr2 23417320 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3085-S Chr2 29764591 29764640 0 0 Deletion 49 intron_variant HET FN3085-S Chr2 30483741 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g49890 retrotransposon protein, putative, unclassified, expressed FN3085-S Chr3 17141312 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os03g30050 protein kinase family protein, putative, expressed FN3085-S Chr3 18777009 18777029 0 0 Deletion 20 INTERGENIC HOMO FN3085-S Chr3 19325980 19325994 0 0 Deletion 14 upstream_gene_variant HET FN3085-S Chr3 20829848 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3085-S Chr3 21936411 Chr2 18250504 0 Translocation 0 FN3085-S Chr3 25435031 25435035 0 0 Deletion 4 upstream_gene_variant HET FN3085-S Chr3 29970735 29970736 0 0 Deletion 1 upstream_gene_variant HET FN3085-S Chr3 29972224 29972224 0 0 Insertion 2 upstream_gene_variant HET FN3085-S Chr3 7417100 7417100 0 0 Insertion 1 downstream_gene_variant HET FN3085-S Chr4 11295488 11295488 0 0 Insertion 2 upstream_gene_variant HET FN3085-S Chr4 20755470 20755488 0 0 Deletion 18 upstream_gene_variant HET FN3085-S Chr4 22939446 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN3085-S Chr4 22939447 T-A 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN3085-S Chr4 2373369 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3085-S Chr4 29698443 29698457 0 0 Deletion 14 upstream_gene_variant HET FN3085-S Chr4 30104735 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3085-S Chr4 3934780 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3085-S Chr4 8286305 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3085-S Chr4 9253948 9253949 0 0 Deletion 1 upstream_gene_variant HET FN3085-S Chr5 12204265 12204265 0 0 Insertion 1 upstream_gene_variant HET FN3085-S Chr5 13211172 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3085-S Chr5 14394164 Chr4 26106842 0 Translocation 0 FN3085-S Chr5 16402269 16402283 0 0 Deletion 14 upstream_gene_variant HET FN3085-S Chr5 18792768 18792768 0 0 Insertion 1 upstream_gene_variant HET FN3085-S Chr5 22662982 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3085-S Chr5 6370657 Chr4 16080158 0 Translocation 0 FN3085-S Chr5 8021556 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3085-S Chr6 10294224 10294224 0 0 Insertion 1 downstream_gene_variant HET FN3085-S Chr6 12006873 12006889 0 0 Deletion 16 upstream_gene_variant HET FN3085-S Chr6 1282373 1282373 0 0 Insertion 1 upstream_gene_variant HET FN3085-S Chr6 14478543 14478543 0 0 Insertion 1 downstream_gene_variant HET FN3085-S Chr6 15553271 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g27470 retrotransposon, putative, centromere-specific FN3085-S Chr6 16048427 16048428 0 0 Deletion 1 downstream_gene_variant HET FN3085-S Chr6 16700991 17471924 0 0 Inversion 770933 FN3085-S Chr6 16917794 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3085-S Chr6 17403001 17466000 0 0 Deletion 62999 LOC_Os06g30179 cytochrome P450, putative, expressed FN3085-S Chr6 17403001 17466000 0 0 Deletion 62999 LOC_Os06g30200 transposon protein, putative, CACTA, En/Spm sub-class FN3085-S Chr6 17403001 17466000 0 0 Deletion 62999 LOC_Os06g30210 expressed protein FN3085-S Chr6 17403001 17466000 0 0 Deletion 62999 LOC_Os06g30230 expressed protein FN3085-S Chr6 17403001 17466000 0 0 Deletion 62999 LOC_Os06g30240 hypothetical protein FN3085-S Chr6 17403001 17466000 0 0 Deletion 62999 LOC_Os06g30250 expressed protein FN3085-S Chr6 17403001 17466000 0 0 Deletion 62999 LOC_Os06g30260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3085-S Chr6 17403001 17466000 0 0 Deletion 62999 LOC_Os06g33990 expressed protein FN3085-S Chr6 19955894 19955894 0 0 Insertion 1 upstream_gene_variant HET FN3085-S Chr6 20074118 20074161 0 0 Deletion 43 upstream_gene_variant HET FN3085-S Chr6 22952548 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g38650 receptor-like protein kinase precursor, putative, expressed FN3085-S Chr6 2421030 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN3085-S Chr6 25823610 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os06g42980 retrotransposon protein, putative, unclassified, expressed FN3085-S Chr7 1795177 1795177 0 0 Insertion 2 upstream_gene_variant HET FN3085-S Chr7 22531321 22531322 0 0 Deletion 1 upstream_gene_variant HET FN3085-S Chr7 4613352 4613396 0 0 Deletion 44 downstream_gene_variant HET FN3085-S Chr7 8437630 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3085-S Chr7 9373552 9373567 0 0 Deletion 15 upstream_gene_variant HET FN3085-S Chr8 1441924 1441925 0 0 Deletion 1 downstream_gene_variant HET FN3085-S Chr8 22256365 22256365 0 0 Insertion 1 downstream_gene_variant HET FN3085-S Chr8 24027564 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3085-S Chr8 9908968 Chr4 14224738 0 Translocation 0 FN3085-S Chr9 14289240 14653159 0 0 Inversion 363919 FN3085-S Chr9 14696441 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os09g24700 expressed protein FN3085-S Chr9 14696442 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3085-S Chr9 1487674 Chr8 23352813 0 Translocation 0 LOC_Os09g03110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3085-S Chr9 16994292 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3085-S Chr9 3770059 Chr4 5840894 0 Translocation 0