FN3092-S Chr1 10779952 10779952 0 0 Insertion 16 upstream_gene_variant HET FN3092-S Chr1 11011001 11039000 0 0 Deletion 27999 LOC_Os01g19460 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr1 11011001 11039000 0 0 Deletion 27999 LOC_Os01g19470 nodal modulator 1 precursor, putative, expressed FN3092-S Chr1 11514001 11540000 0 0 Deletion 25999 LOC_Os01g20700 hypothetical protein FN3092-S Chr1 11514001 11540000 0 0 Deletion 25999 LOC_Os01g20710 expressed protein FN3092-S Chr1 11514001 11540000 0 0 Deletion 25999 LOC_Os01g20720 CC-NBS-LRR, putative, expressed FN3092-S Chr1 11714001 11734000 0 0 Deletion 19999 LOC_Os01g20980 pectinesterase, putative, expressed FN3092-S Chr1 11714001 11734000 0 0 Deletion 19999 LOC_Os01g20990 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr1 11714001 11734000 0 0 Deletion 19999 LOC_Os01g21000 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr1 11714001 11734000 0 0 Deletion 19999 LOC_Os01g21010 expressed protein FN3092-S Chr1 11974001 12005000 0 0 Deletion 30999 LOC_Os01g21480 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr1 11974001 12005000 0 0 Deletion 30999 LOC_Os01g21490 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr1 11974001 12005000 0 0 Deletion 30999 LOC_Os01g21530 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr1 128202 128204 0 0 Deletion 2 upstream_gene_variant HET FN3092-S Chr1 13292490 13292491 0 0 Deletion 1 INTRON HOMO FN3092-S Chr1 14571001 14606000 0 0 Deletion 34999 LOC_Os01g25710 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr1 14571001 14606000 0 0 Deletion 34999 LOC_Os01g25720 disease resistance protein RGA4, putative, expressed FN3092-S Chr1 14571001 14606000 0 0 Deletion 34999 LOC_Os01g25730 retrotransposon protein, putative, unclassified FN3092-S Chr1 14571001 14606000 0 0 Deletion 34999 LOC_Os01g25740 powdery mildew resistance protein PM3F, putative, expressed FN3092-S Chr1 14571001 14606000 0 0 Deletion 34999 LOC_Os01g25760 powdery mildew resistance protein PM3F, putative, expressed FN3092-S Chr1 14571001 14606000 0 0 Deletion 34999 LOC_Os01g25770 expressed protein FN3092-S Chr1 15325001 15346000 0 0 Deletion 20999 LOC_Os01g27449 expressed protein FN3092-S Chr1 15325001 15346000 0 0 Deletion 20999 LOC_Os01g27470 ubiquitin family domain containing protein, expressed FN3092-S Chr1 15325001 15346000 0 0 Deletion 20999 LOC_Os01g27480 glutathione S-transferase, putative, expressed FN3092-S Chr1 15404001 15423000 0 0 Deletion 18999 LOC_Os01g27630 glutathione S-transferase, putative, expressed FN3092-S Chr1 15404001 15423000 0 0 Deletion 18999 LOC_Os01g27640 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr1 15404001 15423000 0 0 Deletion 18999 LOC_Os01g27650 pentatricopeptide, putative, expressed FN3092-S Chr1 15926001 15995000 0 0 Deletion 68999 LOC_Os01g28440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr1 15926001 15995000 0 0 Deletion 68999 LOC_Os01g28450 SCP-like extracellular protein, expressed FN3092-S Chr1 15926001 15995000 0 0 Deletion 68999 LOC_Os01g28474 transferase family protein, putative, expressed FN3092-S Chr1 15926001 15995000 0 0 Deletion 68999 LOC_Os01g28490 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3092-S Chr1 15926001 15995000 0 0 Deletion 68999 LOC_Os01g28500 SCP-like extracellular protein, expressed FN3092-S Chr1 15926001 15995000 0 0 Deletion 68999 LOC_Os01g28510 expressed protein FN3092-S Chr1 15926001 15995000 0 0 Deletion 68999 LOC_Os01g28520 OsFBX8 - F-box domain containing protein, expressed FN3092-S Chr1 15926001 15995000 0 0 Deletion 68999 LOC_Os01g28530 retrotransposon protein, putative, Ty3-gypsy subclass FN3092-S Chr1 15926001 15995000 0 0 Deletion 68999 LOC_Os01g28540 stress regulated protein, putative, expressed FN3092-S Chr1 15926001 15995000 0 0 Deletion 68999 LOC_Os01g28550 retrotransposon protein, putative, Ty1-copia subclass FN3092-S Chr1 15926001 15995000 0 0 Deletion 68999 LOC_Os01g28560 retrotransposon protein, putative, Ty1-copia subclass FN3092-S Chr1 15926001 15995000 0 0 Deletion 68999 LOC_Os01g28570 pentatricopeptide, putative, expressed FN3092-S Chr1 15926001 15995000 0 0 Deletion 68999 LOC_Os01g28580 expressed protein FN3092-S Chr1 15926001 15995000 0 0 Deletion 68999 LOC_Os01g28760 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3092-S Chr1 16355001 16385000 0 0 Deletion 29999 LOC_Os01g29200 transposon protein, putative, unclassified FN3092-S Chr1 16355001 16385000 0 0 Deletion 29999 LOC_Os01g29210 hypothetical protein FN3092-S Chr1 16355001 16385000 0 0 Deletion 29999 LOC_Os01g29220 expressed protein FN3092-S Chr1 16355001 16385000 0 0 Deletion 29999 LOC_Os01g29230 expressed protein FN3092-S Chr1 16355001 16385000 0 0 Deletion 29999 LOC_Os01g29270 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr1 16374821 16374822 0 0 Deletion 1 upstream_gene_variant HET FN3092-S Chr1 18357001 18378000 0 0 Deletion 20999 LOC_Os01g33350 zinc-binding protein, putative, expressed FN3092-S Chr1 18357001 18378000 0 0 Deletion 20999 LOC_Os01g33360 DnaK family protein, putative, expressed FN3092-S Chr1 18357001 18378000 0 0 Deletion 20999 LOC_Os01g33370 zinc-binding protein, putative, expressed FN3092-S Chr1 18939001 18976000 0 0 Deletion 36999 LOC_Os01g34350 RNA-dependent RNA polymerase, putative, expressed FN3092-S Chr1 18939001 18976000 0 0 Deletion 36999 LOC_Os01g34360 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr1 18939001 18976000 0 0 Deletion 36999 LOC_Os01g34374 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr1 18939001 18976000 0 0 Deletion 36999 LOC_Os01g34390 prenyltransferase, putative, expressed FN3092-S Chr1 18939001 18976000 0 0 Deletion 36999 LOC_Os01g34400 transposon protein, putative, Pong sub-class, expressed FN3092-S Chr1 18939001 18976000 0 0 Deletion 36999 LOC_Os01g34410 transposon protein, putative, Pong sub-class, expressed FN3092-S Chr1 19142001 19162000 0 0 Deletion 19999 LOC_Os01g34720 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr1 19142001 19162000 0 0 Deletion 19999 LOC_Os01g34730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr1 19142001 19162000 0 0 Deletion 19999 LOC_Os01g34890 GLUCAN SYNTHASE-LIKE protein, putative, expressed FN3092-S Chr1 19408001 19442000 0 0 Deletion 33999 LOC_Os01g35070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr1 19408001 19442000 0 0 Deletion 33999 LOC_Os01g35080 retrotransposon protein, putative, unclassified FN3092-S Chr1 19408001 19442000 0 0 Deletion 33999 LOC_Os01g35090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr1 19408001 19442000 0 0 Deletion 33999 LOC_Os01g35100 zinc finger, C3HC4 type domain containing protein, expressed FN3092-S Chr1 19408001 19442000 0 0 Deletion 33999 LOC_Os01g35110 expressed protein FN3092-S Chr1 19408001 19442000 0 0 Deletion 33999 LOC_Os01g35120 zinc finger, C3HC4 type domain containing protein, expressed FN3092-S Chr1 19698001 19730000 0 0 Deletion 31999 LOC_Os01g35600 retrotransposon protein, putative, unclassified FN3092-S Chr1 19698001 19730000 0 0 Deletion 31999 LOC_Os01g35610 expressed protein FN3092-S Chr1 19698001 19730000 0 0 Deletion 31999 LOC_Os01g35620 retrotransposon protein, putative, unclassified FN3092-S Chr1 19698001 19730000 0 0 Deletion 31999 LOC_Os01g35630 retrotransposon, putative, centromere-specific, expressed FN3092-S Chr1 19772001 19792000 0 0 Deletion 19999 LOC_Os01g35720 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr1 19772001 19792000 0 0 Deletion 19999 LOC_Os01g35730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr1 19772001 19792000 0 0 Deletion 19999 LOC_Os01g36390 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed FN3092-S Chr1 20496001 20583000 0 0 Deletion 86999 LOC_Os01g36850 transposon protein, putative, Pong sub-class, expressed FN3092-S Chr1 20496001 20583000 0 0 Deletion 86999 LOC_Os01g36860 DEAD-box ATP-dependent RNA helicase 40, putative, expressed FN3092-S Chr1 20496001 20583000 0 0 Deletion 86999 LOC_Os01g36870 phox domain-containing protein, putative, expressed FN3092-S Chr1 20496001 20583000 0 0 Deletion 86999 LOC_Os01g36880 hypothetical protein FN3092-S Chr1 20496001 20583000 0 0 Deletion 86999 LOC_Os01g36890 DEAD-box ATP-dependent RNA helicase, putative, expressed FN3092-S Chr1 20496001 20583000 0 0 Deletion 86999 LOC_Os01g36900 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr1 20496001 20583000 0 0 Deletion 86999 LOC_Os01g36910 transposon protein, putative, unclassified, expressed FN3092-S Chr1 20496001 20583000 0 0 Deletion 86999 LOC_Os01g36920 DEAD-box ATP-dependent RNA helicase, putative, expressed FN3092-S Chr1 20496001 20583000 0 0 Deletion 86999 LOC_Os01g36930 ubiquitin carboxyl-terminal hydrolase 6, putative, expressed FN3092-S Chr1 20496001 20583000 0 0 Deletion 86999 LOC_Os01g36984 expressed protein FN3092-S Chr1 20640001 20661000 0 0 Deletion 20999 LOC_Os01g37020 carboxyl-terminal peptidase, putative, expressed FN3092-S Chr1 20640001 20661000 0 0 Deletion 20999 LOC_Os01g37030 conserved hypothetical protein FN3092-S Chr1 20640001 20661000 0 0 Deletion 20999 LOC_Os01g37842 expressed protein FN3092-S Chr1 21501001 21517000 0 0 Deletion 15999 LOC_Os01g38340 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr1 21501001 21517000 0 0 Deletion 15999 LOC_Os01g39330 helix-loop-helix DNA-binding domain containing protein, expressed FN3092-S Chr1 22139001 22170000 0 0 Deletion 30999 LOC_Os01g39340 expressed protein FN3092-S Chr1 22139001 22170000 0 0 Deletion 30999 LOC_Os01g39350 protein kinase domain containing protein, expressed FN3092-S Chr1 22139001 22170000 0 0 Deletion 30999 LOC_Os01g39360 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr1 22139001 22170000 0 0 Deletion 30999 LOC_Os01g39370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr1 22139001 22170000 0 0 Deletion 30999 LOC_Os01g39380 SCD1, putative, expressed FN3092-S Chr1 23199001 23213000 0 0 Deletion 13999 LOC_Os01g41070 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr1 23675001 23690000 0 0 Deletion 14999 LOC_Os01g41820 cytochrome P450 72A1, putative, expressed FN3092-S Chr1 23675001 23690000 0 0 Deletion 14999 LOC_Os01g41834 chalcone synthase, putative, expressed FN3092-S Chr1 23675001 23690000 0 0 Deletion 14999 LOC_Os01g43720 cytochrome P450 72A1, putative, expressed FN3092-S Chr1 25892872 25892872 0 0 Insertion 1 downstream_gene_variant HET FN3092-S Chr1 26271001 26300000 0 0 Deletion 28999 LOC_Os01g46200 expressed protein FN3092-S Chr1 26271001 26300000 0 0 Deletion 28999 LOC_Os01g46210 GDSL-like lipase/acylhydrolase, putative, expressed FN3092-S Chr1 26271001 26300000 0 0 Deletion 28999 LOC_Os01g46220 GDSL-like lipase/acylhydrolase, putative, expressed FN3092-S Chr1 26271001 26300000 0 0 Deletion 28999 LOC_Os01g46230 tetratricopeptide-like helical, putative, expressed FN3092-S Chr1 26271001 26300000 0 0 Deletion 28999 LOC_Os01g46240 lipase class 3 family protein, putative, expressed FN3092-S Chr1 26271001 26300000 0 0 Deletion 28999 LOC_Os01g48640 expressed protein FN3092-S Chr1 28703001 28715000 0 0 Deletion 11999 LOC_Os01g49950 transposon protein, putative, unclassified, expressed FN3092-S Chr1 28703001 28715000 0 0 Deletion 11999 LOC_Os01g49960 expressed protein FN3092-S Chr1 28703001 28715000 0 0 Deletion 11999 LOC_Os01g49970 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr1 29395001 29418000 0 0 Deletion 22999 LOC_Os01g51154 single myb histone, putative, expressed FN3092-S Chr1 29395001 29418000 0 0 Deletion 22999 LOC_Os01g51170 glycylpeptide N-tetradecanoyltransferase 1, putative, expressed FN3092-S Chr1 29395001 29418000 0 0 Deletion 22999 LOC_Os01g51180 transposon protein, putative, unclassified, expressed FN3092-S Chr1 32220399 32220401 0 0 Deletion 2 INTERGENIC HET FN3092-S Chr1 32221001 32253000 0 0 Deletion 31999 LOC_Os01g55940 OsGH3.2 - Probable indole-3-acetic acid-amido synthetase, expressed FN3092-S Chr1 32221001 32253000 0 0 Deletion 31999 LOC_Os01g55950 acetamidase, putative, expressed FN3092-S Chr1 32221001 32253000 0 0 Deletion 31999 LOC_Os01g55960 pentatricopeptide, putative, expressed FN3092-S Chr1 32221001 32253000 0 0 Deletion 31999 LOC_Os01g55974 deoxycytidylate deaminase, putative, expressed FN3092-S Chr1 32221001 32253000 0 0 Deletion 31999 LOC_Os01g55990 expressed protein FN3092-S Chr1 32221001 32253000 0 0 Deletion 31999 LOC_Os01g56000 RNA recognition motif containing protein, expressed FN3092-S Chr1 32221001 32253000 0 0 Deletion 31999 LOC_Os01g56010 serpin domain containing protein, putative, expressed FN3092-S Chr1 32221001 32253000 0 0 Deletion 31999 LOC_Os01g56020 expressed protein FN3092-S Chr1 32371001 32395000 0 0 Deletion 23999 LOC_Os01g56210 expressed protein FN3092-S Chr1 32371001 32395000 0 0 Deletion 23999 LOC_Os01g56220 expressed protein FN3092-S Chr1 32371001 32395000 0 0 Deletion 23999 LOC_Os01g56230 transmembrane protein 56, putative, expressed FN3092-S Chr1 32371001 32395000 0 0 Deletion 23999 LOC_Os01g56235 expressed protein FN3092-S Chr1 32371001 32395000 0 0 Deletion 23999 LOC_Os01g56240 OsSAUR2 - Auxin-responsive SAUR gene family member, expressed FN3092-S Chr1 32371001 32395000 0 0 Deletion 23999 LOC_Os01g56250 transposon protein, putative, unclassified, expressed FN3092-S Chr1 32371001 32395000 0 0 Deletion 23999 LOC_Os01g56330 TKL_IRAK_CrRLK1L-1.5 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed FN3092-S Chr1 32469001 32511000 0 0 Deletion 41999 LOC_Os01g56350 PTAC12, putative, expressed FN3092-S Chr1 32469001 32511000 0 0 Deletion 41999 LOC_Os01g56360 wax synthase, putative, expressed FN3092-S Chr1 32469001 32511000 0 0 Deletion 41999 LOC_Os01g56370 wax synthase, putative, expressed FN3092-S Chr1 32469001 32511000 0 0 Deletion 41999 LOC_Os01g56380 decarboxylase, putative, expressed FN3092-S Chr1 32469001 32511000 0 0 Deletion 41999 LOC_Os01g56390 OsFBX26 - F-box domain containing protein, expressed FN3092-S Chr1 32469001 32511000 0 0 Deletion 41999 LOC_Os01g56510 periplasmic beta-glucosidase precursor, putative, expressed FN3092-S Chr1 32580001 32593000 0 0 Deletion 12999 LOC_Os01g56510 periplasmic beta-glucosidase precursor, putative, expressed FN3092-S Chr1 32580001 32593000 0 0 Deletion 12999 LOC_Os01g56520 double-stranded RNA binding motif containing protein, expressed FN3092-S Chr1 32580001 32593000 0 0 Deletion 12999 LOC_Os01g56530 DUF260 domain containing protein, putative, expressed FN3092-S Chr1 32857001 32871000 0 0 Deletion 13999 LOC_Os01g56900 expressed protein FN3092-S Chr1 32857001 32871000 0 0 Deletion 13999 LOC_Os01g56910 expressed protein FN3092-S Chr1 32857001 32871000 0 0 Deletion 13999 LOC_Os01g57590 expressed protein FN3092-S Chr1 33287001 33311000 0 0 Deletion 23999 LOC_Os01g57590 expressed protein FN3092-S Chr1 33287001 33311000 0 0 Deletion 23999 LOC_Os01g57599 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr1 33287001 33311000 0 0 Deletion 23999 LOC_Os01g57610 OsGH3.1 - Probable indole-3-acetic acid-amido synthetase, expressed FN3092-S Chr1 33900001 33915000 0 0 Deletion 14999 LOC_Os01g58640 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed FN3092-S Chr1 33900001 33915000 0 0 Deletion 14999 LOC_Os01g58650 LTPL35 - Protease inhibitor/seed storage/LTP family protein precursor, putative FN3092-S Chr1 33900001 33915000 0 0 Deletion 14999 LOC_Os01g58660 LTPL29 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3092-S Chr1 33900001 33915000 0 0 Deletion 14999 LOC_Os01g58670 expressed protein FN3092-S Chr1 34218001 34251000 0 0 Deletion 32999 LOC_Os01g59240 expressed protein FN3092-S Chr1 34218001 34251000 0 0 Deletion 32999 LOC_Os01g59250 expressed protein FN3092-S Chr1 34218001 34251000 0 0 Deletion 32999 LOC_Os01g59260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr1 34218001 34251000 0 0 Deletion 32999 LOC_Os01g60470 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr1 34972001 34992000 0 0 Deletion 19999 LOC_Os01g60480 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr1 34972001 34992000 0 0 Deletion 19999 LOC_Os01g60490 WRKY22, expressed FN3092-S Chr1 34972001 34992000 0 0 Deletion 19999 LOC_Os01g60500 hypothetical protein FN3092-S Chr1 35629001 35649000 0 0 Deletion 19999 LOC_Os01g62040 ruvB-like, putative, expressed FN3092-S Chr1 36263001 36280000 0 0 Deletion 16999 LOC_Os01g62630 aspartic proteinase nepenthesin precursor, putative, expressed FN3092-S Chr1 36263001 36280000 0 0 Deletion 16999 LOC_Os01g62640 zinc finger, C3HC4 type domain containing protein, expressed FN3092-S Chr1 36263001 36280000 0 0 Deletion 16999 LOC_Os01g62650 pumilio-family RNA binding protein, putative, expressed FN3092-S Chr1 36462144 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3092-S Chr1 36749001 36782000 0 0 Deletion 32999 LOC_Os01g63430 expressed protein FN3092-S Chr1 36749001 36782000 0 0 Deletion 32999 LOC_Os01g63444 expressed protein FN3092-S Chr1 36749001 36782000 0 0 Deletion 32999 LOC_Os01g63460 MYB family transcription factor, putative, expressed FN3092-S Chr1 36749001 36782000 0 0 Deletion 32999 LOC_Os01g63470 C2 domain containing protein, expressed FN3092-S Chr1 37096001 37140000 0 0 Deletion 43999 LOC_Os01g63940 Transcription initiation factor TFIID subunit A containing protein, expressed FN3092-S Chr1 37096001 37140000 0 0 Deletion 43999 LOC_Os01g63950 expressed protein FN3092-S Chr1 37096001 37140000 0 0 Deletion 43999 LOC_Os01g63960 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3092-S Chr1 37096001 37140000 0 0 Deletion 43999 LOC_Os01g63970 sialyltransferase family domain containing protein, expressed FN3092-S Chr1 37873882 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3092-S Chr1 39624182 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3092-S Chr1 42095001 42107000 0 0 Deletion 11999 LOC_Os01g72740 cytochrome P450, putative, expressed FN3092-S Chr1 42681420 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3092-S Chr1 6394375 6394383 0 0 Deletion 8 UTR_5_PRIME HOMO FN3092-S Chr1 8509001 8519000 0 0 Deletion 9999 LOC_Os01g15190 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr1 8509001 8519000 0 0 Deletion 9999 LOC_Os01g16500 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr1 8746158 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3092-S Chr1 9364001 9373000 0 0 Deletion 8999 LOC_Os01g16510 expressed protein FN3092-S Chr1 9364001 9373000 0 0 Deletion 8999 LOC_Os01g18250 subtilase, putative, expressed FN3092-S Chr1 9794554 9794593 0 0 Deletion 39 UTR_3_PRIME HET FN3092-S Chr10 11014226 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g21510 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr10 11122001 11180000 0 0 Deletion 57999 LOC_Os10g21700 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr10 11122001 11180000 0 0 Deletion 57999 LOC_Os10g21720 expressed protein FN3092-S Chr10 11122001 11180000 0 0 Deletion 57999 LOC_Os10g21730 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3092-S Chr10 11122001 11180000 0 0 Deletion 57999 LOC_Os10g21740 expressed protein FN3092-S Chr10 11122001 11180000 0 0 Deletion 57999 LOC_Os10g21760 retrotransposon protein, putative, unclassified FN3092-S Chr10 11122001 11180000 0 0 Deletion 57999 LOC_Os10g21770 expressed protein FN3092-S Chr10 11122001 11180000 0 0 Deletion 57999 LOC_Os10g21780 hypothetical protein FN3092-S Chr10 11122001 11180000 0 0 Deletion 57999 LOC_Os10g21784 expressed protein FN3092-S Chr10 11725001 11736000 0 0 Deletion 10999 LOC_Os10g22600 ethylene-responsive transcription factor, putative, expressed FN3092-S Chr10 11725001 11736000 0 0 Deletion 10999 LOC_Os10g22810 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr10 12688001 12713000 0 0 Deletion 24999 LOC_Os10g24690 expressed protein FN3092-S Chr10 12688001 12713000 0 0 Deletion 24999 LOC_Os10g24700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr10 12688001 12713000 0 0 Deletion 24999 LOC_Os10g24710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr10 14007456 14007456 0 0 Insertion 1 downstream_gene_variant HET FN3092-S Chr10 15546224 15546225 0 0 Deletion 1 upstream_gene_variant HET FN3092-S Chr10 17818001 17846000 0 0 Deletion 27999 LOC_Os10g33750 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr10 17818001 17846000 0 0 Deletion 27999 LOC_Os10g33770 importin-beta N-terminal domain containing protein, expressed FN3092-S Chr10 18458001 18498000 0 0 Deletion 39999 LOC_Os10g34640 retrotransposon protein, putative, unclassified FN3092-S Chr10 18458001 18498000 0 0 Deletion 39999 LOC_Os10g34650 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr10 18458001 18498000 0 0 Deletion 39999 LOC_Os10g34660 expressed protein FN3092-S Chr10 18458001 18498000 0 0 Deletion 39999 LOC_Os10g34670 prefoldin, putative, expressed FN3092-S Chr10 18458001 18498000 0 0 Deletion 39999 LOC_Os10g34680 vacuolar protein sorting-associated protein 52, putative, expressed FN3092-S Chr10 20301001 20330000 0 0 Deletion 28999 LOC_Os10g37940 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr10 20301001 20330000 0 0 Deletion 28999 LOC_Os10g37950 conserved hypothetical protein FN3092-S Chr10 20301001 20330000 0 0 Deletion 28999 LOC_Os10g39560 OsSCP47 - Putative Serine Carboxypeptidase homologue, expressed FN3092-S Chr10 3060001 3102000 0 0 Deletion 41999 LOC_Os10g06050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr10 3060001 3102000 0 0 Deletion 41999 LOC_Os10g06070 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr10 3060001 3102000 0 0 Deletion 41999 LOC_Os10g06080 hypothetical protein FN3092-S Chr10 3060001 3102000 0 0 Deletion 41999 LOC_Os10g06090 OsWAK104 - OsWAK receptor-like protein kinase, expressed FN3092-S Chr10 3060001 3102000 0 0 Deletion 41999 LOC_Os10g06340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr10 3642001 3659000 0 0 Deletion 16999 LOC_Os10g07010 3-ketoacyl-CoA synthase, putative, expressed FN3092-S Chr10 3642001 3659000 0 0 Deletion 16999 LOC_Os10g07030 expressed protein FN3092-S Chr10 3680001 3696000 0 0 Deletion 15999 LOC_Os10g07030 expressed protein FN3092-S Chr10 5443001 5465000 0 0 Deletion 21999 LOC_Os10g10030 OsWAK111 - OsWAK receptor-like protein kinase, expressed FN3092-S Chr10 5443001 5465000 0 0 Deletion 21999 LOC_Os10g10040 cytochrome P450, putative, expressed FN3092-S Chr10 5718001 5736000 0 0 Deletion 17999 LOC_Os10g10420 OsFBX378 - F-box domain containing protein, expressed FN3092-S Chr10 5718001 5736000 0 0 Deletion 17999 LOC_Os10g10434 dimethyladenosine transferase, putative, expressed FN3092-S Chr10 5718001 5736000 0 0 Deletion 17999 LOC_Os10g10720 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr10 582001 640000 0 0 Deletion 57999 LOC_Os10g01930 transferase family protein, putative, expressed FN3092-S Chr10 582001 640000 0 0 Deletion 57999 LOC_Os10g01940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr10 582001 640000 0 0 Deletion 57999 LOC_Os10g01950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr10 582001 640000 0 0 Deletion 57999 LOC_Os10g01960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr10 582001 640000 0 0 Deletion 57999 LOC_Os10g01970 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr10 582001 640000 0 0 Deletion 57999 LOC_Os10g01984 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr10 582001 640000 0 0 Deletion 57999 LOC_Os10g02000 transferase family protein, putative, expressed FN3092-S Chr10 582001 640000 0 0 Deletion 57999 LOC_Os10g02010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr10 6092001 6104000 0 0 Deletion 11999 LOC_Os10g11022 expressed protein FN3092-S Chr10 6092001 6104000 0 0 Deletion 11999 LOC_Os10g11150 retrotransposon protein, putative, unclassified FN3092-S Chr10 6181001 6219000 0 0 Deletion 37999 LOC_Os10g11160 retrotransposon protein, putative, unclassified FN3092-S Chr10 6181001 6219000 0 0 Deletion 37999 LOC_Os10g11170 expressed protein FN3092-S Chr10 6181001 6219000 0 0 Deletion 37999 LOC_Os10g11180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr10 6181001 6219000 0 0 Deletion 37999 LOC_Os10g11190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr10 6181001 6219000 0 0 Deletion 37999 LOC_Os10g11200 aminotransferase, classes I and II, domain containing protein, expressed FN3092-S Chr10 6181001 6219000 0 0 Deletion 37999 LOC_Os10g11210 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr10 6286001 6321000 0 0 Deletion 34999 LOC_Os10g11340 nitroreductase family protein, putative, expressed FN3092-S Chr10 6286001 6321000 0 0 Deletion 34999 LOC_Os10g11354 MATE efflux family protein, putative, expressed FN3092-S Chr10 6286001 6321000 0 0 Deletion 34999 LOC_Os10g11370 LTPL87 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed FN3092-S Chr10 6286001 6321000 0 0 Deletion 34999 LOC_Os10g11384 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr10 6286001 6321000 0 0 Deletion 34999 LOC_Os10g11400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr10 6286001 6321000 0 0 Deletion 34999 LOC_Os10g11910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr10 6617205 Chr6 13455586 0 Translocation 0 FN3092-S Chr10 6921967 6921967 0 0 Insertion 1 downstream_gene_variant HET FN3092-S Chr10 6987654 6987657 0 0 Deletion 3 upstream_gene_variant HET FN3092-S Chr10 702001 712000 0 0 Deletion 9999 LOC_Os10g02120 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr10 9048001 9133000 0 0 Deletion 84999 LOC_Os10g17900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr10 9048001 9133000 0 0 Deletion 84999 LOC_Os10g17910 OsWAK114 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed FN3092-S Chr10 9048001 9133000 0 0 Deletion 84999 LOC_Os10g17920 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr10 9048001 9133000 0 0 Deletion 84999 LOC_Os10g17930 OsFBX381 - F-box domain containing protein, expressed FN3092-S Chr10 9048001 9133000 0 0 Deletion 84999 LOC_Os10g17940 OsFBX382 - F-box domain containing protein, expressed FN3092-S Chr10 9048001 9133000 0 0 Deletion 84999 LOC_Os10g17950 TKL_IRAK_DUF26-lc.5 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3092-S Chr10 9048001 9133000 0 0 Deletion 84999 LOC_Os10g17960 TKL_IRAK_DUF26-lc.26 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3092-S Chr10 9048001 9133000 0 0 Deletion 84999 LOC_Os10g17970 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr10 9048001 9133000 0 0 Deletion 84999 LOC_Os10g17980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr10 9048001 9133000 0 0 Deletion 84999 LOC_Os10g17990 phosphatidate cytidylyltransferase, putative, expressed FN3092-S Chr10 9956105 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3092-S Chr11 10145001 10163000 0 0 Deletion 17999 LOC_Os11g18070 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 1020001 1051000 0 0 Deletion 30999 LOC_Os11g02950 auxin efflux carrier component, putative, expressed FN3092-S Chr11 1020001 1051000 0 0 Deletion 30999 LOC_Os11g02964 FAR1 family protein, expressed FN3092-S Chr11 1020001 1051000 0 0 Deletion 30999 LOC_Os11g02980 expressed protein FN3092-S Chr11 1020001 1051000 0 0 Deletion 30999 LOC_Os11g02990 conserved hypothetical protein FN3092-S Chr11 1020001 1051000 0 0 Deletion 30999 LOC_Os11g03000 retrotransposon protein, putative, unclassified FN3092-S Chr11 1020001 1051000 0 0 Deletion 30999 LOC_Os11g03010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr11 1020001 1051000 0 0 Deletion 30999 LOC_Os11g03020 retrotransposon protein, putative, Ty3-gypsy subclass FN3092-S Chr11 10527001 10610000 0 0 Deletion 82999 LOC_Os11g18660 expressed protein FN3092-S Chr11 10527001 10610000 0 0 Deletion 82999 LOC_Os11g18670 ubiquitin family protein, putative, expressed FN3092-S Chr11 10527001 10610000 0 0 Deletion 82999 LOC_Os11g18680 hypothetical protein FN3092-S Chr11 10527001 10610000 0 0 Deletion 82999 LOC_Os11g18690 glycosyl hydrolase family 3 protein, putative, expressed FN3092-S Chr11 10527001 10610000 0 0 Deletion 82999 LOC_Os11g18700 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 10527001 10610000 0 0 Deletion 82999 LOC_Os11g18710 expressed protein FN3092-S Chr11 10527001 10610000 0 0 Deletion 82999 LOC_Os11g18720 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 10527001 10610000 0 0 Deletion 82999 LOC_Os11g18730 glycosyl hydrolase family 3 protein, putative, expressed FN3092-S Chr11 10665001 10691000 0 0 Deletion 25999 LOC_Os11g18800 retrotransposon protein, putative, unclassified FN3092-S Chr11 10665001 10691000 0 0 Deletion 25999 LOC_Os11g18810 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr11 10665001 10691000 0 0 Deletion 25999 LOC_Os11g18820 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr11 10665001 10691000 0 0 Deletion 25999 LOC_Os11g19010 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr11 11073001 11104000 0 0 Deletion 30999 LOC_Os11g19610 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 11422001 11435000 0 0 Deletion 12999 LOC_Os11g19840 O-methyltransferase, putative, expressed FN3092-S Chr11 11422001 11435000 0 0 Deletion 12999 LOC_Os11g19850 expressed protein FN3092-S Chr11 11422001 11435000 0 0 Deletion 12999 LOC_Os11g19930 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 11474001 11540000 0 0 Deletion 65999 LOC_Os11g19940 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 11474001 11540000 0 0 Deletion 65999 LOC_Os11g19950 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 11474001 11540000 0 0 Deletion 65999 LOC_Os11g19960 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 11474001 11540000 0 0 Deletion 65999 LOC_Os11g19970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr11 11474001 11540000 0 0 Deletion 65999 LOC_Os11g19980 hypothetical protein FN3092-S Chr11 11474001 11540000 0 0 Deletion 65999 LOC_Os11g19990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr11 11474001 11540000 0 0 Deletion 65999 LOC_Os11g20000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr11 11474001 11540000 0 0 Deletion 65999 LOC_Os11g20010 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 11474001 11540000 0 0 Deletion 65999 LOC_Os11g20020 expressed protein FN3092-S Chr11 11474001 11540000 0 0 Deletion 65999 LOC_Os11g20030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr11 11474001 11540000 0 0 Deletion 65999 LOC_Os11g20040 O-methyltransferase, putative, expressed FN3092-S Chr11 11642319 G-A 0 0 Single Base Substitution 0 STOP_GAINED HOMO LOC_Os11g20150 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr11 12712001 12735000 0 0 Deletion 22999 LOC_Os11g22160 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 12712001 12735000 0 0 Deletion 22999 LOC_Os11g22170 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 12712001 12735000 0 0 Deletion 22999 LOC_Os11g22180 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 12712001 12735000 0 0 Deletion 22999 LOC_Os11g22190 transposon protein, putative, unclassified FN3092-S Chr11 12926001 12964000 0 0 Deletion 37999 LOC_Os11g22490 hypothetical protein FN3092-S Chr11 12926001 12964000 0 0 Deletion 37999 LOC_Os11g22500 retrotransposon, putative, centromere-specific, expressed FN3092-S Chr11 12926001 12964000 0 0 Deletion 37999 LOC_Os11g22510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr11 12926001 12964000 0 0 Deletion 37999 LOC_Os11g22530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr11 12926001 12964000 0 0 Deletion 37999 LOC_Os11g22540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr11 13412001 13454000 0 0 Deletion 41999 LOC_Os11g23740 retrotransposon protein, putative, Ty1-copia subclass FN3092-S Chr11 13412001 13454000 0 0 Deletion 41999 LOC_Os11g23750 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3092-S Chr11 13412001 13454000 0 0 Deletion 41999 LOC_Os11g23760 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr11 13412001 13454000 0 0 Deletion 41999 LOC_Os11g23770 cysteine protease, putative, expressed FN3092-S Chr11 13412001 13454000 0 0 Deletion 41999 LOC_Os11g23780 expressed protein FN3092-S Chr11 13412001 13454000 0 0 Deletion 41999 LOC_Os11g23890 peptide transporter PTR2, putative, expressed FN3092-S Chr11 13534001 13558000 0 0 Deletion 23999 LOC_Os11g23900 retrotransposon protein, putative, unclassified FN3092-S Chr11 13534001 13558000 0 0 Deletion 23999 LOC_Os11g23910 retrotransposon protein, putative, unclassified FN3092-S Chr11 13534001 13558000 0 0 Deletion 23999 LOC_Os11g23920 expressed protein FN3092-S Chr11 13534001 13558000 0 0 Deletion 23999 LOC_Os11g24150 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr11 14142001 14248000 0 0 Deletion 105999 LOC_Os11g24824 expressed protein FN3092-S Chr11 14142001 14248000 0 0 Deletion 105999 LOC_Os11g24840 ankyrin repeat family protein, putative, expressed FN3092-S Chr11 14142001 14248000 0 0 Deletion 105999 LOC_Os11g24850 ankyrin repeat domain containing protein, expressed FN3092-S Chr11 14142001 14248000 0 0 Deletion 105999 LOC_Os11g24860 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr11 14142001 14248000 0 0 Deletion 105999 LOC_Os11g24870 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr11 14142001 14248000 0 0 Deletion 105999 LOC_Os11g24880 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr11 14142001 14248000 0 0 Deletion 105999 LOC_Os11g24890 expressed protein FN3092-S Chr11 14142001 14248000 0 0 Deletion 105999 LOC_Os11g24900 expressed protein FN3092-S Chr11 14142001 14248000 0 0 Deletion 105999 LOC_Os11g24910 hypothetical protein FN3092-S Chr11 14142001 14248000 0 0 Deletion 105999 LOC_Os11g24920 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 14142001 14248000 0 0 Deletion 105999 LOC_Os11g24930 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr11 14142001 14248000 0 0 Deletion 105999 LOC_Os11g24940 expressed protein FN3092-S Chr11 14142001 14248000 0 0 Deletion 105999 LOC_Os11g24950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr11 14142001 14248000 0 0 Deletion 105999 LOC_Os11g24964 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr11 14142001 14248000 0 0 Deletion 105999 LOC_Os11g24980 hypothetical protein FN3092-S Chr11 14142001 14248000 0 0 Deletion 105999 LOC_Os11g24990 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 14142001 14248000 0 0 Deletion 105999 LOC_Os11g25000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr11 14142001 14248000 0 0 Deletion 105999 LOC_Os11g25010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr11 14142001 14248000 0 0 Deletion 105999 LOC_Os11g25050 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 14284001 14303000 0 0 Deletion 18999 LOC_Os11g25070 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 14284001 14303000 0 0 Deletion 18999 LOC_Os11g25080 expressed protein FN3092-S Chr11 14284001 14303000 0 0 Deletion 18999 LOC_Os11g25090 expressed protein FN3092-S Chr11 14284001 14303000 0 0 Deletion 18999 LOC_Os11g25650 retrotransposon protein, putative, unclassified FN3092-S Chr11 14639001 14665000 0 0 Deletion 25999 LOC_Os11g25660 retrotransposon protein, putative, Ty3-gypsy subclass FN3092-S Chr11 14639001 14665000 0 0 Deletion 25999 LOC_Os11g25670 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr11 14639001 14665000 0 0 Deletion 25999 LOC_Os11g25680 retrotransposon protein, putative, unclassified FN3092-S Chr11 14639001 14665000 0 0 Deletion 25999 LOC_Os11g25690 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 14639001 14665000 0 0 Deletion 25999 LOC_Os11g25700 tropinone reductase, putative, expressed FN3092-S Chr11 14639001 14665000 0 0 Deletion 25999 LOC_Os11g25720 cytokinin-N-glucosyltransferase 1, putative, expressed FN3092-S Chr11 15406909 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3092-S Chr11 15643001 15704000 0 0 Deletion 60999 LOC_Os11g27210 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 15643001 15704000 0 0 Deletion 60999 LOC_Os11g27220 hypothetical protein FN3092-S Chr11 15643001 15704000 0 0 Deletion 60999 LOC_Os11g27240 pentatricopeptide repeat domain containing protein, putative, expressed FN3092-S Chr11 15643001 15704000 0 0 Deletion 60999 LOC_Os11g27250 expressed protein FN3092-S Chr11 15643001 15704000 0 0 Deletion 60999 LOC_Os11g27264 OsSCP60 - Putative Serine Carboxypeptidase homologue, expressed FN3092-S Chr11 15643001 15704000 0 0 Deletion 60999 LOC_Os11g27280 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr11 15643001 15704000 0 0 Deletion 60999 LOC_Os11g27290 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr11 15643001 15704000 0 0 Deletion 60999 LOC_Os11g27300 expressed protein FN3092-S Chr11 15643001 15704000 0 0 Deletion 60999 LOC_Os11g27430 NB-ARC domain containing protein, expressed FN3092-S Chr11 16615001 16627000 0 0 Deletion 11999 LOC_Os11g28730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr11 16615001 16627000 0 0 Deletion 11999 LOC_Os11g28950 pollen signalling protein with adenylyl cyclase activity, putative, expressed FN3092-S Chr11 16620192 Chr6 18374055 0 Translocation 0 LOC_Os06g31600 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr11 16620192 Chr6 18374055 0 Translocation 0 LOC_Os11g28730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr11 1679239 Chr8 4115452 0 Translocation 0 FN3092-S Chr11 18680363 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3092-S Chr11 20897001 20933000 0 0 Deletion 35999 LOC_Os11g35660 leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed FN3092-S Chr11 20897001 20933000 0 0 Deletion 35999 LOC_Os11g35670 expressed protein FN3092-S Chr11 20897001 20933000 0 0 Deletion 35999 LOC_Os11g35680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr11 20897001 20933000 0 0 Deletion 35999 LOC_Os11g35690 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 20897001 20933000 0 0 Deletion 35999 LOC_Os11g35700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr11 21076001 21115000 0 0 Deletion 38999 LOC_Os11g35880 transposon protein, putative, unclassified, expressed FN3092-S Chr11 21076001 21115000 0 0 Deletion 38999 LOC_Os11g35890 leucine rich repeat protein, putative, expressed FN3092-S Chr11 21076001 21115000 0 0 Deletion 38999 LOC_Os11g35900 hypothetical protein FN3092-S Chr11 21076001 21115000 0 0 Deletion 38999 LOC_Os11g35910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr11 21076001 21115000 0 0 Deletion 38999 LOC_Os11g35920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr11 21076001 21115000 0 0 Deletion 38999 LOC_Os11g35930 chalcone synthase, putative, expressed FN3092-S Chr11 21076001 21115000 0 0 Deletion 38999 LOC_Os11g35940 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr11 23267001 23312000 0 0 Deletion 44999 LOC_Os11g39100 expressed protein FN3092-S Chr11 23267001 23312000 0 0 Deletion 44999 LOC_Os11g39110 expressed protein FN3092-S Chr11 23267001 23312000 0 0 Deletion 44999 LOC_Os11g39120 expressed protein FN3092-S Chr11 23267001 23312000 0 0 Deletion 44999 LOC_Os11g39130 zinc finger, C3HC4 type family protein, expressed FN3092-S Chr11 23267001 23312000 0 0 Deletion 44999 LOC_Os11g39140 thioredoxin domain-containing protein 9, putative, expressed FN3092-S Chr11 23267001 23312000 0 0 Deletion 44999 LOC_Os11g39150 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 23267001 23312000 0 0 Deletion 44999 LOC_Os11g39160 NBS-LRR disease resistance protein, putative, expressed FN3092-S Chr11 24566533 Chr1 14049322 0 Translocation 0 FN3092-S Chr11 24661001 24698000 0 0 Deletion 36999 LOC_Os11g41170 disease resistance protein RPM1, putative, expressed FN3092-S Chr11 24661001 24698000 0 0 Deletion 36999 LOC_Os11g41180 expressed protein FN3092-S Chr11 24661001 24698000 0 0 Deletion 36999 LOC_Os11g41190 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 24718001 24771000 0 0 Deletion 52999 LOC_Os11g41230 ATBPM6, putative, expressed FN3092-S Chr11 24718001 24771000 0 0 Deletion 52999 LOC_Os11g41240 ATBPM6, putative FN3092-S Chr11 24718001 24771000 0 0 Deletion 52999 LOC_Os11g41250 expressed protein FN3092-S Chr11 24718001 24771000 0 0 Deletion 52999 LOC_Os11g41260 snRNP protein, putative, expressed FN3092-S Chr11 24718001 24771000 0 0 Deletion 52999 LOC_Os11g41270 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 24718001 24771000 0 0 Deletion 52999 LOC_Os11g41280 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 24718001 24771000 0 0 Deletion 52999 LOC_Os11g41290 MrBTB5 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH-related domain, expressed FN3092-S Chr11 24718001 24771000 0 0 Deletion 52999 LOC_Os11g41300 MBTB65 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3092-S Chr11 24718001 24771000 0 0 Deletion 52999 LOC_Os11g41310 MBTB66 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3092-S Chr11 24769295 Chr8 20145821 0 Translocation 0 FN3092-S Chr11 26586001 26600000 0 0 Deletion 13999 LOC_Os11g44014 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 26586001 26600000 0 0 Deletion 13999 LOC_Os11g44040 hypothetical protein FN3092-S Chr11 26627001 26646000 0 0 Deletion 18999 LOC_Os11g44070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr11 26627001 26646000 0 0 Deletion 18999 LOC_Os11g44084 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr11 26627001 26646000 0 0 Deletion 18999 LOC_Os11g44100 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr11 26627001 26646000 0 0 Deletion 18999 LOC_Os11g44110 expressed protein FN3092-S Chr11 26627001 26646000 0 0 Deletion 18999 LOC_Os11g44120 hypothetical protein FN3092-S Chr11 26627001 26646000 0 0 Deletion 18999 LOC_Os11g44130 retrotransposon protein, putative, unclassified FN3092-S Chr11 26627001 26646000 0 0 Deletion 18999 LOC_Os11g47430 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 28765260 Chr9 1675441 0 Translocation 0 FN3092-S Chr11 3543001 3589000 0 0 Deletion 45999 LOC_Os11g07124 EFR, putative, expressed FN3092-S Chr11 3543001 3589000 0 0 Deletion 45999 LOC_Os11g07130 receptor kinase, putative, expressed FN3092-S Chr11 3543001 3589000 0 0 Deletion 45999 LOC_Os11g07140 receptor kinase, putative, expressed FN3092-S Chr11 3543001 3589000 0 0 Deletion 45999 LOC_Os11g07150 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 3543001 3589000 0 0 Deletion 45999 LOC_Os11g07160 receptor protein kinase CLAVATA1 precursor, putative, expressed FN3092-S Chr11 3543001 3589000 0 0 Deletion 45999 LOC_Os11g07170 receptor kinase, putative, expressed FN3092-S Chr11 3543001 3589000 0 0 Deletion 45999 LOC_Os11g07180 receptor protein kinase CLAVATA1 precursor, putative, expressed FN3092-S Chr11 5548782 5549201 0 0 Deletion 419 upstream_gene_variant HET FN3092-S Chr11 5668001 5700000 0 0 Deletion 31999 LOC_Os11g10434 expressed protein FN3092-S Chr11 5668001 5700000 0 0 Deletion 31999 LOC_Os11g10440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr11 5668001 5700000 0 0 Deletion 31999 LOC_Os11g10450 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr11 5668001 5700000 0 0 Deletion 31999 LOC_Os11g10460 peroxidase precursor, putative, expressed FN3092-S Chr11 7131664 Chr3 19437692 0 Translocation 0 FN3092-S Chr11 7668001 7692000 0 0 Deletion 23999 LOC_Os11g13910 expressed protein FN3092-S Chr11 7668001 7692000 0 0 Deletion 23999 LOC_Os11g13920 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 7668001 7692000 0 0 Deletion 23999 LOC_Os11g13940 NBS-LRR disease resistance protein, putative, expressed FN3092-S Chr11 8474001 8503000 0 0 Deletion 28999 LOC_Os11g15060 SAM dependent carboxyl methyltransferase, putative, expressed FN3092-S Chr11 8474001 8503000 0 0 Deletion 28999 LOC_Os11g15070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr11 8474001 8503000 0 0 Deletion 28999 LOC_Os11g15080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr11 8474001 8503000 0 0 Deletion 28999 LOC_Os11g15090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr11 8474001 8503000 0 0 Deletion 28999 LOC_Os11g15100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr11 9234001 9322000 0 0 Deletion 87999 LOC_Os11g16660 hypothetical protein FN3092-S Chr11 9234001 9322000 0 0 Deletion 87999 LOC_Os11g16670 expressed protein FN3092-S Chr11 9234001 9322000 0 0 Deletion 87999 LOC_Os11g16680 transferase family protein, putative, expressed FN3092-S Chr11 9234001 9322000 0 0 Deletion 87999 LOC_Os11g16690 retrotransposon protein, putative, unclassified FN3092-S Chr11 9234001 9322000 0 0 Deletion 87999 LOC_Os11g16710 expressed protein FN3092-S Chr11 9234001 9322000 0 0 Deletion 87999 LOC_Os11g16720 expressed protein FN3092-S Chr11 9234001 9322000 0 0 Deletion 87999 LOC_Os11g16730 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr11 9234001 9322000 0 0 Deletion 87999 LOC_Os11g16740 transposon protein, putative, unclassified, expressed FN3092-S Chr11 9234001 9322000 0 0 Deletion 87999 LOC_Os11g16750 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr11 9234001 9322000 0 0 Deletion 87999 LOC_Os11g16760 hypothetical protein FN3092-S Chr11 9234001 9322000 0 0 Deletion 87999 LOC_Os11g16770 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed FN3092-S Chr11 9234001 9322000 0 0 Deletion 87999 LOC_Os11g16780 expressed protein FN3092-S Chr11 9234001 9322000 0 0 Deletion 87999 LOC_Os11g16790 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr11 9234001 9322000 0 0 Deletion 87999 LOC_Os11g17110 disease resistance protein RPM1, putative FN3092-S Chr11 9504001 9550000 0 0 Deletion 45999 LOC_Os11g17120 disease resistance protein RPM1, putative FN3092-S Chr11 9504001 9550000 0 0 Deletion 45999 LOC_Os11g17130 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 9504001 9550000 0 0 Deletion 45999 LOC_Os11g17150 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 9504001 9550000 0 0 Deletion 45999 LOC_Os11g17160 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 9709001 9722000 0 0 Deletion 12999 LOC_Os11g17420 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 9709001 9722000 0 0 Deletion 12999 LOC_Os11g17430 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr11 9709001 9722000 0 0 Deletion 12999 LOC_Os11g17440 enoyl-CoA hydratase/isomerase family protein, expressed FN3092-S Chr11 9981486 9981486 0 0 Insertion 1 intron_variant HET FN3092-S Chr11 9983001 10017000 0 0 Deletion 33999 LOC_Os11g17840 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr11 9983001 10017000 0 0 Deletion 33999 LOC_Os11g17850 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr11 9983001 10017000 0 0 Deletion 33999 LOC_Os11g17870 expressed protein FN3092-S Chr11 9983001 10017000 0 0 Deletion 33999 LOC_Os11g17880 expressed protein FN3092-S Chr12 10965001 10999000 0 0 Deletion 33999 LOC_Os12g18910 transposon protein, putative, unclassified, expressed FN3092-S Chr12 10965001 10999000 0 0 Deletion 33999 LOC_Os12g18920 expressed protein FN3092-S Chr12 10965001 10999000 0 0 Deletion 33999 LOC_Os12g18930 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr12 10965001 10999000 0 0 Deletion 33999 LOC_Os12g18940 retrotransposon protein, putative, Ty3-gypsy subclass FN3092-S Chr12 10965001 10999000 0 0 Deletion 33999 LOC_Os12g18950 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr12 10965001 10999000 0 0 Deletion 33999 LOC_Os12g18960 integral membrane protein DUF6 containing protein, expressed FN3092-S Chr12 10965001 10999000 0 0 Deletion 33999 LOC_Os12g19250 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr12 11764001 11792000 0 0 Deletion 27999 LOC_Os12g20200 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr12 11764001 11792000 0 0 Deletion 27999 LOC_Os12g20210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr12 11764001 11792000 0 0 Deletion 27999 LOC_Os12g20270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr12 11826001 11861000 0 0 Deletion 34999 LOC_Os12g20270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr12 11826001 11861000 0 0 Deletion 34999 LOC_Os12g20280 expressed protein FN3092-S Chr12 11826001 11861000 0 0 Deletion 34999 LOC_Os12g20290 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr12 11826001 11861000 0 0 Deletion 34999 LOC_Os12g20300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr12 11875001 11892000 0 0 Deletion 16999 LOC_Os12g20350 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr12 11875001 11892000 0 0 Deletion 16999 LOC_Os12g20360 hypothetical protein FN3092-S Chr12 12050462 12050626 0 0 Deletion 164 intergenic_region HET FN3092-S Chr12 14135001 14165000 0 0 Deletion 29999 LOC_Os12g24680 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr12 14135001 14165000 0 0 Deletion 29999 LOC_Os12g24690 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3092-S Chr12 14135001 14165000 0 0 Deletion 29999 LOC_Os12g24700 retrotransposon protein, putative, Ty1-copia subclass FN3092-S Chr12 14199001 14210000 0 0 Deletion 10999 LOC_Os12g24750 retrotransposon protein, putative, Ty3-gypsy subclass FN3092-S Chr12 14199001 14210000 0 0 Deletion 10999 LOC_Os12g24760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr12 14199001 14210000 0 0 Deletion 10999 LOC_Os12g24770 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr12 143516 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3092-S Chr12 14414105 14414106 0 0 Deletion 1 upstream_gene_variant HET FN3092-S Chr12 15330001 15378000 0 0 Deletion 47999 LOC_Os12g26290 alpha-DOX2, putative, expressed FN3092-S Chr12 15330001 15378000 0 0 Deletion 47999 LOC_Os12g26300 expressed protein FN3092-S Chr12 15330001 15378000 0 0 Deletion 47999 LOC_Os12g26310 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr12 15330001 15378000 0 0 Deletion 47999 LOC_Os12g26320 retrotransposon, putative, centromere-specific, expressed FN3092-S Chr12 15330001 15378000 0 0 Deletion 47999 LOC_Os12g26330 expressed protein FN3092-S Chr12 15530001 15543000 0 0 Deletion 12999 FN3092-S Chr12 15574001 15597000 0 0 Deletion 22999 LOC_Os12g26600 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr12 15574001 15597000 0 0 Deletion 22999 LOC_Os12g26610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr12 15574001 15597000 0 0 Deletion 22999 LOC_Os12g26620 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr12 15574001 15597000 0 0 Deletion 22999 LOC_Os12g26630 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr12 15618001 15637000 0 0 Deletion 18999 LOC_Os12g26670 hypothetical protein FN3092-S Chr12 15618001 15637000 0 0 Deletion 18999 LOC_Os12g26680 expressed protein FN3092-S Chr12 15618001 15637000 0 0 Deletion 18999 LOC_Os12g26830 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr12 15862001 15892000 0 0 Deletion 29999 LOC_Os12g27096 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3092-S Chr12 15862001 15892000 0 0 Deletion 29999 LOC_Os12g27180 retrotransposon protein, putative, Ty3-gypsy subclass FN3092-S Chr12 16336001 16382000 0 0 Deletion 45999 LOC_Os12g27710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr12 16336001 16382000 0 0 Deletion 45999 LOC_Os12g27720 hypothetical protein FN3092-S Chr12 16336001 16382000 0 0 Deletion 45999 LOC_Os12g27730 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3092-S Chr12 16336001 16382000 0 0 Deletion 45999 LOC_Os12g27740 expressed protein FN3092-S Chr12 16336001 16382000 0 0 Deletion 45999 LOC_Os12g27750 OsFBX441 - F-box domain containing protein, expressed FN3092-S Chr12 16336001 16382000 0 0 Deletion 45999 LOC_Os12g27760 OsFBX442 - F-box domain containing protein, expressed FN3092-S Chr12 16336001 16382000 0 0 Deletion 45999 LOC_Os12g27770 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr12 16336001 16382000 0 0 Deletion 45999 LOC_Os12g27780 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr12 16336001 16382000 0 0 Deletion 45999 LOC_Os12g27910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr12 16855001 16878000 0 0 Deletion 22999 LOC_Os12g28550 ATPase, AAA family domain containing protein, expressed FN3092-S Chr12 16855001 16878000 0 0 Deletion 22999 LOC_Os12g28560 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr12 16855001 16878000 0 0 Deletion 22999 LOC_Os12g30270 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr12 1706001 1735000 0 0 Deletion 28999 LOC_Os12g04060 transcription initiation factor, putative, expressed FN3092-S Chr12 1706001 1735000 0 0 Deletion 28999 LOC_Os12g04070 expressed protein FN3092-S Chr12 1706001 1735000 0 0 Deletion 28999 LOC_Os12g04080 transferase family protein, putative, expressed FN3092-S Chr12 1706001 1735000 0 0 Deletion 28999 LOC_Os12g04090 zinc finger, C3HC4 type domain containing protein FN3092-S Chr12 1706001 1735000 0 0 Deletion 28999 LOC_Os12g04100 cytochrome P450, putative, expressed FN3092-S Chr12 1706001 1735000 0 0 Deletion 28999 LOC_Os12g04110 pentatricopeptide, putative, expressed FN3092-S Chr12 1706001 1735000 0 0 Deletion 28999 LOC_Os12g04120 phosphoglycerate mutase, putative, expressed FN3092-S Chr12 1706001 1735000 0 0 Deletion 28999 LOC_Os12g04130 OsFBO23 - F-box and other domain containing protein, expressed FN3092-S Chr12 17142796 17142796 0 0 Insertion 1 upstream_gene_variant HET FN3092-S Chr12 18698736 Chr5 6216827 0 Translocation 0 FN3092-S Chr12 19268001 19287000 0 0 Deletion 18999 LOC_Os12g31980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr12 19268001 19287000 0 0 Deletion 18999 LOC_Os12g31990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr12 19268001 19287000 0 0 Deletion 18999 LOC_Os12g32000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr12 19337001 19418000 0 0 Deletion 80999 LOC_Os12g32060 expressed protein FN3092-S Chr12 19337001 19418000 0 0 Deletion 80999 LOC_Os12g32080 expressed protein FN3092-S Chr12 19337001 19418000 0 0 Deletion 80999 LOC_Os12g32090 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr12 19337001 19418000 0 0 Deletion 80999 LOC_Os12g32110 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr12 19337001 19418000 0 0 Deletion 80999 LOC_Os12g32120 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr12 19337001 19418000 0 0 Deletion 80999 LOC_Os12g32130 trehalose phosphatase, putative, expressed FN3092-S Chr12 19337001 19418000 0 0 Deletion 80999 LOC_Os12g32140 transposon protein, putative, unclassified, expressed FN3092-S Chr12 19337001 19418000 0 0 Deletion 80999 LOC_Os12g32150 expressed protein FN3092-S Chr12 19337001 19418000 0 0 Deletion 80999 LOC_Os12g32160 expressed protein FN3092-S Chr12 19337001 19418000 0 0 Deletion 80999 LOC_Os12g32170 expressed protein FN3092-S Chr12 19337001 19418000 0 0 Deletion 80999 LOC_Os12g32410 retrotransposon protein, putative, unclassified FN3092-S Chr12 19500808 19501223 0 0 Inversion 415 LOC_Os12g32300 expressed protein FN3092-S Chr12 19572221 Chr6 18237117 0 Translocation 0 FN3092-S Chr12 20045001 20069000 0 0 Deletion 23999 LOC_Os12g33140 expressed protein FN3092-S Chr12 20045001 20069000 0 0 Deletion 23999 LOC_Os12g33150 expressed protein FN3092-S Chr12 20045001 20069000 0 0 Deletion 23999 LOC_Os12g33160 RGH1A, putative, expressed FN3092-S Chr12 20045001 20069000 0 0 Deletion 23999 LOC_Os12g33165 expressed protein FN3092-S Chr12 20187001 20204000 0 0 Deletion 16999 LOC_Os12g33415 expressed protein FN3092-S Chr12 20187001 20204000 0 0 Deletion 16999 LOC_Os12g33420 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr12 20187001 20204000 0 0 Deletion 16999 LOC_Os12g33434 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr12 20187001 20204000 0 0 Deletion 16999 LOC_Os12g33620 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr12 20296001 20313000 0 0 Deletion 16999 LOC_Os12g33630 retrotransposon, putative, centromere-specific, expressed FN3092-S Chr12 20296001 20313000 0 0 Deletion 16999 LOC_Os12g33640 retrotransposon, putative, centromere-specific, expressed FN3092-S Chr12 20296001 20313000 0 0 Deletion 16999 LOC_Os12g33650 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr12 20296001 20313000 0 0 Deletion 16999 LOC_Os12g34780 expressed protein FN3092-S Chr12 20325124 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3092-S Chr12 21735001 21766000 0 0 Deletion 30999 LOC_Os12g35730 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr12 21735001 21766000 0 0 Deletion 30999 LOC_Os12g35740 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3092-S Chr12 21735001 21766000 0 0 Deletion 30999 LOC_Os12g35790 expressed protein FN3092-S Chr12 21962545 Chr1 11341431 0 Translocation 0 FN3092-S Chr12 22489001 22503000 0 0 Deletion 13999 LOC_Os12g36730 stripe rust resistance protein Yr10, putative, expressed FN3092-S Chr12 22489001 22503000 0 0 Deletion 13999 LOC_Os12g37010 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr12 24331808 24331928 0 0 Deletion 120 upstream_gene_variant HET FN3092-S Chr12 24924001 24942000 0 0 Deletion 17999 LOC_Os12g41980 lipase class 3 family protein, putative, expressed FN3092-S Chr12 26028001 26042000 0 0 Deletion 13999 LOC_Os12g41980 lipase class 3 family protein, putative, expressed FN3092-S Chr12 26028001 26042000 0 0 Deletion 13999 LOC_Os12g41990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr12 26238001 26264000 0 0 Deletion 25999 FN3092-S Chr12 2690001 2705000 0 0 Deletion 14999 LOC_Os12g05870 Cupin domain containing protein, expressed FN3092-S Chr12 2690001 2705000 0 0 Deletion 14999 LOC_Os12g05880 Cupin domain containing protein, expressed FN3092-S Chr12 2690001 2705000 0 0 Deletion 14999 LOC_Os12g06480 PHD-finger family protein, expressed FN3092-S Chr12 3131001 3145000 0 0 Deletion 13999 LOC_Os12g06500 expressed protein FN3092-S Chr12 3366001 3387000 0 0 Deletion 20999 LOC_Os12g06910 nucleolar protein family 6, putative, expressed FN3092-S Chr12 3366001 3387000 0 0 Deletion 20999 LOC_Os12g06920 NBS-LRR disease resistance protein, putative, expressed FN3092-S Chr12 3366001 3387000 0 0 Deletion 20999 LOC_Os12g06930 expressed protein FN3092-S Chr12 4130308 Chr2 22709073 0 Translocation 0 LOC_Os02g37630 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr12 4130308 Chr2 22709073 0 Translocation 0 LOC_Os12g08100 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr12 4292001 4330000 0 0 Deletion 37999 LOC_Os12g08450 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr12 4292001 4330000 0 0 Deletion 37999 LOC_Os12g08460 retrotransposon protein, putative, unclassified FN3092-S Chr12 4292001 4330000 0 0 Deletion 37999 LOC_Os12g08470 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr12 4292001 4330000 0 0 Deletion 37999 LOC_Os12g08480 expressed protein FN3092-S Chr12 4292001 4330000 0 0 Deletion 37999 LOC_Os12g08490 transposon protein, putative, unclassified, expressed FN3092-S Chr12 4292001 4330000 0 0 Deletion 37999 LOC_Os12g08500 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr12 4292001 4330000 0 0 Deletion 37999 LOC_Os12g08510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr12 4292001 4330000 0 0 Deletion 37999 LOC_Os12g08530 expressed protein FN3092-S Chr12 4292001 4330000 0 0 Deletion 37999 LOC_Os12g08820 growth regulator related protein, putative, expressed FN3092-S Chr12 4551001 4565000 0 0 Deletion 13999 LOC_Os12g08830 thylakoid lumenal 29.8 kDa protein, putative, expressed FN3092-S Chr12 4551001 4565000 0 0 Deletion 13999 LOC_Os12g08840 hypothetical protein FN3092-S Chr12 4551001 4565000 0 0 Deletion 13999 LOC_Os12g08970 hypothetical protein FN3092-S Chr12 5011740 5011833 0 0 Deletion 93 upstream_gene_variant HET FN3092-S Chr12 5126001 5151000 0 0 Deletion 24999 LOC_Os12g09720 dirigent, putative, expressed FN3092-S Chr12 5126001 5151000 0 0 Deletion 24999 LOC_Os12g09739 pollen signalling protein with adenylyl cyclase activity, putative, expressed FN3092-S Chr12 5126001 5151000 0 0 Deletion 24999 LOC_Os12g09990 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr12 5286001 5313000 0 0 Deletion 26999 LOC_Os12g10000 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr12 5286001 5313000 0 0 Deletion 26999 LOC_Os12g10010 expressed protein FN3092-S Chr12 5286001 5313000 0 0 Deletion 26999 LOC_Os12g10020 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr12 5286001 5313000 0 0 Deletion 26999 LOC_Os12g10030 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr12 5286001 5313000 0 0 Deletion 26999 LOC_Os12g12460 hypothetical protein FN3092-S Chr12 8116001 8204000 0 0 Deletion 87999 LOC_Os12g14260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr12 8116001 8204000 0 0 Deletion 87999 LOC_Os12g14270 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr12 8116001 8204000 0 0 Deletion 87999 LOC_Os12g14280 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr12 8116001 8204000 0 0 Deletion 87999 LOC_Os12g14290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr12 8116001 8204000 0 0 Deletion 87999 LOC_Os12g14310 expressed protein FN3092-S Chr12 8116001 8204000 0 0 Deletion 87999 LOC_Os12g14320 expressed protein FN3092-S Chr12 8116001 8204000 0 0 Deletion 87999 LOC_Os12g14330 disease resistance protein RPM1, putative, expressed FN3092-S Chr12 8116001 8204000 0 0 Deletion 87999 LOC_Os12g14340 hypothetical protein FN3092-S Chr12 8116001 8204000 0 0 Deletion 87999 LOC_Os12g14350 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr12 8116001 8204000 0 0 Deletion 87999 LOC_Os12g14360 transposon protein, putative, unclassified, expressed FN3092-S Chr12 8116001 8204000 0 0 Deletion 87999 LOC_Os12g14374 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr12 8357001 8376000 0 0 Deletion 18999 LOC_Os12g14640 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr12 8357001 8376000 0 0 Deletion 18999 LOC_Os12g14650 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr12 8357001 8376000 0 0 Deletion 18999 LOC_Os12g14720 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr12 9894001 9914000 0 0 Deletion 19999 LOC_Os12g17290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr12 9894001 9914000 0 0 Deletion 19999 LOC_Os12g17300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr12 9894001 9914000 0 0 Deletion 19999 LOC_Os12g17310 prefoldin, putative, expressed FN3092-S Chr2 11239001 11292000 0 0 Deletion 52999 LOC_Os02g19270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr2 11239001 11292000 0 0 Deletion 52999 LOC_Os02g19280 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr2 11239001 11292000 0 0 Deletion 52999 LOC_Os02g19290 expressed protein FN3092-S Chr2 11239001 11292000 0 0 Deletion 52999 LOC_Os02g19300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr2 11239001 11292000 0 0 Deletion 52999 LOC_Os02g19310 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr2 11239001 11292000 0 0 Deletion 52999 LOC_Os02g19320 hypothetical protein FN3092-S Chr2 11239001 11292000 0 0 Deletion 52999 LOC_Os02g19850 hAT dimerisation domain-containing protein, putative, expressed FN3092-S Chr2 12159001 12182000 0 0 Deletion 22999 LOC_Os02g20640 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr2 12159001 12182000 0 0 Deletion 22999 LOC_Os02g20650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr2 12159001 12182000 0 0 Deletion 22999 LOC_Os02g20660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr2 12159001 12182000 0 0 Deletion 22999 LOC_Os02g20670 retrotransposon protein, putative, unclassified FN3092-S Chr2 12763001 12783000 0 0 Deletion 19999 LOC_Os02g21530 expressed protein FN3092-S Chr2 12763001 12783000 0 0 Deletion 19999 LOC_Os02g21540 expressed protein FN3092-S Chr2 12763001 12783000 0 0 Deletion 19999 LOC_Os02g22570 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr2 13529001 13565000 0 0 Deletion 35999 LOC_Os02g22710 expressed protein FN3092-S Chr2 13529001 13565000 0 0 Deletion 35999 LOC_Os02g22720 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr2 13529001 13565000 0 0 Deletion 35999 LOC_Os02g22730 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr2 13529001 13565000 0 0 Deletion 35999 LOC_Os02g22740 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr2 13529001 13565000 0 0 Deletion 35999 LOC_Os02g22750 expressed protein FN3092-S Chr2 13529001 13565000 0 0 Deletion 35999 LOC_Os02g22760 retrotransposon protein, putative, LINE subclass, expressed FN3092-S Chr2 13529001 13565000 0 0 Deletion 35999 LOC_Os02g22770 expressed protein FN3092-S Chr2 13529001 13565000 0 0 Deletion 35999 LOC_Os02g22780 T-complex protein, putative, expressed FN3092-S Chr2 13991001 14007000 0 0 Deletion 15999 LOC_Os02g24155 retrotransposon protein, putative, unclassified FN3092-S Chr2 13991001 14007000 0 0 Deletion 15999 LOC_Os02g24170 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr2 13991001 14007000 0 0 Deletion 15999 LOC_Os02g24190 cyclin-T1-2, putative, expressed FN3092-S Chr2 13991001 14007000 0 0 Deletion 15999 LOC_Os02g24770 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3092-S Chr2 14345689 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g24730 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr2 14368001 14421000 0 0 Deletion 52999 LOC_Os02g24770 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3092-S Chr2 14368001 14421000 0 0 Deletion 52999 LOC_Os02g24780 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr2 14368001 14421000 0 0 Deletion 52999 LOC_Os02g24790 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr2 14368001 14421000 0 0 Deletion 52999 LOC_Os02g24800 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr2 14368001 14421000 0 0 Deletion 52999 LOC_Os02g24810 expressed protein FN3092-S Chr2 14368001 14421000 0 0 Deletion 52999 LOC_Os02g24820 hypothetical protein FN3092-S Chr2 14368001 14421000 0 0 Deletion 52999 LOC_Os02g24830 expressed protein FN3092-S Chr2 14368001 14421000 0 0 Deletion 52999 LOC_Os02g24840 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr2 14368001 14421000 0 0 Deletion 52999 LOC_Os02g24850 retrotransposon protein, putative, Ty3-gypsy subclass FN3092-S Chr2 14368001 14421000 0 0 Deletion 52999 LOC_Os02g24860 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr2 14368001 14421000 0 0 Deletion 52999 LOC_Os02g24870 retrotransposon protein, putative, Ty3-gypsy subclass FN3092-S Chr2 14699001 14731000 0 0 Deletion 31999 LOC_Os02g25250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr2 14699001 14731000 0 0 Deletion 31999 LOC_Os02g25260 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr2 14699001 14731000 0 0 Deletion 31999 LOC_Os02g25270 expressed protein FN3092-S Chr2 14699001 14731000 0 0 Deletion 31999 LOC_Os02g25280 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3092-S Chr2 14767637 14767637 0 0 Insertion 1 frameshift_variant HET LOC_Os02g25330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr2 15060295 15060296 0 0 Deletion 1 downstream_gene_variant HET FN3092-S Chr2 15833001 15853000 0 0 Deletion 19999 LOC_Os02g26970 hypothetical protein FN3092-S Chr2 15833001 15853000 0 0 Deletion 19999 LOC_Os02g26984 expressed protein FN3092-S Chr2 15932001 15947000 0 0 Deletion 14999 LOC_Os02g27440 DNA topoisomerase 1, putative, expressed FN3092-S Chr2 16169001 16212000 0 0 Deletion 42999 LOC_Os02g27450 expressed protein FN3092-S Chr2 16169001 16212000 0 0 Deletion 42999 LOC_Os02g27460 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr2 16169001 16212000 0 0 Deletion 42999 LOC_Os02g27470 importin-7, putative, expressed FN3092-S Chr2 16169001 16212000 0 0 Deletion 42999 LOC_Os02g27540 NB-ARC domain containing protein, expressed FN3092-S Chr2 16316001 16336000 0 0 Deletion 19999 LOC_Os02g27560 expressed protein FN3092-S Chr2 16316001 16336000 0 0 Deletion 19999 LOC_Os02g27570 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr2 16316001 16336000 0 0 Deletion 19999 LOC_Os02g27580 hypothetical protein FN3092-S Chr2 16316001 16336000 0 0 Deletion 19999 LOC_Os02g28470 transferase family protein, putative, expressed FN3092-S Chr2 17150001 17185000 0 0 Deletion 34999 LOC_Os02g28980 peptidyl-prolyl isomerase, putative, expressed FN3092-S Chr2 17150001 17185000 0 0 Deletion 34999 LOC_Os02g28990 expressed protein FN3092-S Chr2 17150001 17185000 0 0 Deletion 34999 LOC_Os02g29000 Cupin domain containing protein, expressed FN3092-S Chr2 17150001 17185000 0 0 Deletion 34999 LOC_Os02g29010 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr2 17150001 17185000 0 0 Deletion 34999 LOC_Os02g29020 Cupin domain containing protein, expressed FN3092-S Chr2 17150001 17185000 0 0 Deletion 34999 LOC_Os02g29030 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr2 17638001 17662000 0 0 Deletion 23999 LOC_Os02g29660 retrotransposon protein, putative, Ty3-gypsy subclass FN3092-S Chr2 17638001 17662000 0 0 Deletion 23999 LOC_Os02g29670 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr2 17638001 17662000 0 0 Deletion 23999 LOC_Os02g31920 expressed protein FN3092-S Chr2 19529001 19564000 0 0 Deletion 34999 LOC_Os02g32890 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr2 19529001 19564000 0 0 Deletion 34999 LOC_Os02g32900 expressed protein FN3092-S Chr2 19529001 19564000 0 0 Deletion 34999 LOC_Os02g32910 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr2 19529001 19564000 0 0 Deletion 34999 LOC_Os02g32920 expressed protein FN3092-S Chr2 19529001 19564000 0 0 Deletion 34999 LOC_Os02g32930 bile acid sodium symporter, putative, expressed FN3092-S Chr2 19529001 19564000 0 0 Deletion 34999 LOC_Os02g32940 expressed protein FN3092-S Chr2 19529001 19564000 0 0 Deletion 34999 LOC_Os02g33110 glycosyl hydrolases, putative, expressed FN3092-S Chr2 21199001 21221000 0 0 Deletion 21999 LOC_Os02g35280 retrotransposon protein, putative, unclassified FN3092-S Chr2 21199001 21221000 0 0 Deletion 21999 LOC_Os02g35290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr2 22108001 22142000 0 0 Deletion 33999 LOC_Os02g36619 exo70 exocyst complex subunit, putative, expressed FN3092-S Chr2 22108001 22142000 0 0 Deletion 33999 LOC_Os02g36640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr2 22108001 22142000 0 0 Deletion 33999 LOC_Os02g36650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr2 22108001 22142000 0 0 Deletion 33999 LOC_Os02g36660 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr2 22108001 22142000 0 0 Deletion 33999 LOC_Os02g36670 expressed protein FN3092-S Chr2 22108001 22142000 0 0 Deletion 33999 LOC_Os02g36680 expressed protein FN3092-S Chr2 22703382 22703418 0 0 Deletion 36 frameshift_variant&splice_acceptor_variant&splice_region_variant&intron_variant HET LOC_Os02g37620 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr2 25365968 25365970 0 0 Deletion 2 upstream_gene_variant HET FN3092-S Chr2 26898001 26912000 0 0 Deletion 13999 LOC_Os02g44420 conserved hypothetical protein FN3092-S Chr2 26898001 26912000 0 0 Deletion 13999 LOC_Os02g44430 transposon protein, putative, unclassified, expressed FN3092-S Chr2 26898001 26912000 0 0 Deletion 13999 LOC_Os02g44440 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr2 26898001 26912000 0 0 Deletion 13999 LOC_Os02g45054 ZOS2-15 - C2H2 zinc finger protein, expressed FN3092-S Chr2 2791140 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3092-S Chr2 28628308 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g46920 expressed protein FN3092-S Chr2 28913001 28939000 0 0 Deletion 25999 LOC_Os02g47350 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed FN3092-S Chr2 28913001 28939000 0 0 Deletion 25999 LOC_Os02g47360 PPR repeat domain containing protein, putative, expressed FN3092-S Chr2 28913001 28939000 0 0 Deletion 25999 LOC_Os02g47370 transcription factor TF2, putative, expressed FN3092-S Chr2 28913001 28939000 0 0 Deletion 25999 LOC_Os02g47380 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr2 28913001 28939000 0 0 Deletion 25999 LOC_Os02g47390 expressed protein FN3092-S Chr2 28913001 28939000 0 0 Deletion 25999 LOC_Os02g47400 pectinacetylesterase domain containing protein, expressed FN3092-S Chr2 29301001 29319000 0 0 Deletion 17999 LOC_Os02g47910 hypothetical protein FN3092-S Chr2 29301001 29319000 0 0 Deletion 17999 LOC_Os02g47920 ZOS2-16 - C2H2 zinc finger protein, expressed FN3092-S Chr2 29301001 29319000 0 0 Deletion 17999 LOC_Os02g48610 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed FN3092-S Chr2 29668049 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g48450 xylem cysteine proteinase 2 precursor, putative, expressed FN3092-S Chr2 29954001 29972000 0 0 Deletion 17999 LOC_Os02g48990 phosphatidylinositol transfer, putative, expressed FN3092-S Chr2 30931001 30972000 0 0 Deletion 40999 LOC_Os02g50650 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr2 30931001 30972000 0 0 Deletion 40999 LOC_Os02g50660 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr2 30931001 30972000 0 0 Deletion 40999 LOC_Os02g50670 expressed protein FN3092-S Chr2 30931001 30972000 0 0 Deletion 40999 LOC_Os02g50680 AAA-type ATPase family protein, putative, expressed FN3092-S Chr2 30931001 30972000 0 0 Deletion 40999 LOC_Os02g50690 GDSL-like lipase/acylhydrolase, putative, expressed FN3092-S Chr2 30931001 30972000 0 0 Deletion 40999 LOC_Os02g50700 expressed protein FN3092-S Chr2 32720960 32720960 0 0 Insertion 9 upstream_gene_variant HET FN3092-S Chr2 3598467 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3092-S Chr2 3911846 3911846 0 0 Insertion 1 upstream_gene_variant HET FN3092-S Chr2 4676477 4676493 0 0 Deletion 16 downstream_gene_variant HET FN3092-S Chr2 6353001 6363000 0 0 Deletion 9999 FN3092-S Chr3 11096001 11125000 0 0 Deletion 28999 LOC_Os03g19750 transposon protein, putative, unclassified, expressed FN3092-S Chr3 11096001 11125000 0 0 Deletion 28999 LOC_Os03g19760 HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed FN3092-S Chr3 12001001 12019000 0 0 Deletion 17999 LOC_Os03g21080 guanine nucleotide exchange factor, putative, expressed FN3092-S Chr3 12001001 12019000 0 0 Deletion 17999 LOC_Os03g21090 auxin-independent growth promoter protein, putative, expressed FN3092-S Chr3 12001001 12019000 0 0 Deletion 17999 LOC_Os03g21100 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr3 12048311 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g21140 RNA-binding zinc finger protein, putative, expressed FN3092-S Chr3 12168001 12190000 0 0 Deletion 21999 LOC_Os03g21290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr3 12168001 12190000 0 0 Deletion 21999 LOC_Os03g21300 expressed protein FN3092-S Chr3 12168001 12190000 0 0 Deletion 21999 LOC_Os03g22450 auxin response factor 75, putative, expressed FN3092-S Chr3 12868001 12889000 0 0 Deletion 20999 LOC_Os03g22460 expressed protein FN3092-S Chr3 12868001 12889000 0 0 Deletion 20999 LOC_Os03g22470 desiccation-related protein PCC13-62 precursor, putative, expressed FN3092-S Chr3 12868001 12889000 0 0 Deletion 20999 LOC_Os03g22480 transposon protein, putative, unclassified, expressed FN3092-S Chr3 14480001 14504000 0 0 Deletion 23999 LOC_Os03g25350 LTPL36 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3092-S Chr3 14480001 14504000 0 0 Deletion 23999 LOC_Os03g25360 peroxidase precursor, putative, expressed FN3092-S Chr3 14480001 14504000 0 0 Deletion 23999 LOC_Os03g25364 expressed protein FN3092-S Chr3 14480001 14504000 0 0 Deletion 23999 LOC_Os03g26880 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr3 15346001 15354000 0 0 Deletion 7999 LOC_Os03g26890 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr3 15346001 15354000 0 0 Deletion 7999 LOC_Os03g27190 ICE-like protease p20 domain containing protein, putative, expressed FN3092-S Chr3 17148001 17170000 0 0 Deletion 21999 LOC_Os03g30080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr3 17148001 17170000 0 0 Deletion 21999 LOC_Os03g30084 expressed protein FN3092-S Chr3 17148001 17170000 0 0 Deletion 21999 LOC_Os03g30088 retrotransposon protein, putative, unclassified FN3092-S Chr3 17148001 17170000 0 0 Deletion 21999 LOC_Os03g30350 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr3 17311001 17330000 0 0 Deletion 18999 LOC_Os03g30360 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr3 17311001 17330000 0 0 Deletion 18999 LOC_Os03g30370 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr3 17311001 17330000 0 0 Deletion 18999 LOC_Os03g30390 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr3 17849001 17870000 0 0 Deletion 20999 LOC_Os03g31340 protein transport protein SEC61 subunit gamma, putative FN3092-S Chr3 17849001 17870000 0 0 Deletion 20999 LOC_Os03g31360 glutelin, putative, expressed FN3092-S Chr3 17849001 17870000 0 0 Deletion 20999 LOC_Os03g31594 jmjC domain containing protein, expressed FN3092-S Chr3 18608704 18608712 0 0 Deletion 8 upstream_gene_variant HET FN3092-S Chr3 1878001 1898000 0 0 Deletion 19999 LOC_Os03g04110 lysM domain-containing GPI-anchored protein precursor, putative, expressed FN3092-S Chr3 1878001 1898000 0 0 Deletion 19999 LOC_Os03g04120 AMP-binding enzyme, putative, expressed FN3092-S Chr3 1878001 1898000 0 0 Deletion 19999 LOC_Os03g04130 AMP-binding domain containing protein, expressed FN3092-S Chr3 1878001 1898000 0 0 Deletion 19999 LOC_Os03g04140 serine acetyltransferase protein, putative, expressed FN3092-S Chr3 1878001 1898000 0 0 Deletion 19999 LOC_Os03g05520 nicotiana lesion-inducing like, putative, expressed FN3092-S Chr3 19004001 19050000 0 0 Deletion 45999 LOC_Os03g33240 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr3 19004001 19050000 0 0 Deletion 45999 LOC_Os03g33250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr3 19004001 19050000 0 0 Deletion 45999 LOC_Os03g33260 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr3 19004001 19050000 0 0 Deletion 45999 LOC_Os03g33270 retrotransposon protein, putative, unclassified FN3092-S Chr3 19004001 19050000 0 0 Deletion 45999 LOC_Os03g33280 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr3 19004001 19050000 0 0 Deletion 45999 LOC_Os03g33290 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr3 19004001 19050000 0 0 Deletion 45999 LOC_Os03g33300 retrotransposon, putative, centromere-specific, expressed FN3092-S Chr3 20699001 20737000 0 0 Deletion 37999 LOC_Os03g37360 expressed protein FN3092-S Chr3 20699001 20737000 0 0 Deletion 37999 LOC_Os03g37377 retrotransposon protein, putative, unclassified FN3092-S Chr3 20699001 20737000 0 0 Deletion 37999 LOC_Os03g37394 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr3 20699001 20737000 0 0 Deletion 37999 LOC_Os03g37411 MATE efflux family protein, putative, expressed FN3092-S Chr3 22347001 22375000 0 0 Deletion 27999 LOC_Os03g40194 disease resistance RPP13-like protein 1, putative, expressed FN3092-S Chr3 22347001 22375000 0 0 Deletion 27999 LOC_Os03g40210 expressed protein FN3092-S Chr3 22347001 22375000 0 0 Deletion 27999 LOC_Os03g40220 retrotransposon protein, putative, unclassified FN3092-S Chr3 22347001 22375000 0 0 Deletion 27999 LOC_Os03g40230 expressed protein FN3092-S Chr3 22347001 22375000 0 0 Deletion 27999 LOC_Os03g40240 hypothetical protein FN3092-S Chr3 22347001 22375000 0 0 Deletion 27999 LOC_Os03g40250 Leucine Rich Repeat family protein, expressed FN3092-S Chr3 22347001 22375000 0 0 Deletion 27999 LOC_Os03g40260 Regulator of chromosome condensation domain containing protein, expressed FN3092-S Chr3 22725001 22758000 0 0 Deletion 32999 LOC_Os03g40870 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr3 22725001 22758000 0 0 Deletion 32999 LOC_Os03g40880 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr3 22725001 22758000 0 0 Deletion 32999 LOC_Os03g40900 expressed protein FN3092-S Chr3 22725001 22758000 0 0 Deletion 32999 LOC_Os03g40910 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr3 22725001 22758000 0 0 Deletion 32999 LOC_Os03g40920 expressed protein FN3092-S Chr3 22725001 22758000 0 0 Deletion 32999 LOC_Os03g40930 expressed protein FN3092-S Chr3 23123639 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3092-S Chr3 23148001 23166000 0 0 Deletion 17999 LOC_Os03g41650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr3 23148001 23166000 0 0 Deletion 17999 LOC_Os03g41662 expressed protein FN3092-S Chr3 23148001 23166000 0 0 Deletion 17999 LOC_Os03g41675 expressed protein FN3092-S Chr3 23148001 23166000 0 0 Deletion 17999 LOC_Os03g41690 expressed protein FN3092-S Chr3 23300001 23323000 0 0 Deletion 22999 LOC_Os03g41960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr3 23300001 23323000 0 0 Deletion 22999 LOC_Os03g41970 retrotransposon protein, putative, unclassified FN3092-S Chr3 23300001 23323000 0 0 Deletion 22999 LOC_Os03g41980 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr3 24079001 24111000 0 0 Deletion 31999 LOC_Os03g43160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr3 24079001 24111000 0 0 Deletion 31999 LOC_Os03g43169 retrotransposon protein, putative, Ty3-gypsy subclass FN3092-S Chr3 24079001 24111000 0 0 Deletion 31999 LOC_Os03g43180 transposon protein, putative, unclassified, expressed FN3092-S Chr3 24079001 24111000 0 0 Deletion 31999 LOC_Os03g43190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr3 24079001 24111000 0 0 Deletion 31999 LOC_Os03g43200 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr3 24079001 24111000 0 0 Deletion 31999 LOC_Os03g43210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr3 24079001 24111000 0 0 Deletion 31999 LOC_Os03g43220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr3 24079001 24111000 0 0 Deletion 31999 LOC_Os03g43230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr3 24079001 24111000 0 0 Deletion 31999 LOC_Os03g43235 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr3 26496561 26496565 0 0 Deletion 4 upstream_gene_variant HET FN3092-S Chr3 2733001 2764000 0 0 Deletion 30999 LOC_Os03g05530 nodulin, putative, expressed FN3092-S Chr3 2733001 2764000 0 0 Deletion 30999 LOC_Os03g05540 tetratricopeptide repeat containing protein, putative, expressed FN3092-S Chr3 2733001 2764000 0 0 Deletion 30999 LOC_Os03g05550 expressed protein FN3092-S Chr3 2733001 2764000 0 0 Deletion 30999 LOC_Os03g05580 expressed protein FN3092-S Chr3 28035001 28059000 0 0 Deletion 23999 LOC_Os03g49220 adenylosuccinate synthetase, chloroplast precursor, putative, expressed FN3092-S Chr3 28035001 28059000 0 0 Deletion 23999 LOC_Os03g49230 acetyltransferase, GNAT family, putative, expressed FN3092-S Chr3 28035001 28059000 0 0 Deletion 23999 LOC_Os03g49240 expressed protein FN3092-S Chr3 28035001 28059000 0 0 Deletion 23999 LOC_Os03g49250 OsFBO16 - F-box and other domain containing protein, expressed FN3092-S Chr3 28035001 28059000 0 0 Deletion 23999 LOC_Os03g49260 lipoxygenase, putative, expressed FN3092-S Chr3 28035001 28059000 0 0 Deletion 23999 LOC_Os03g49270 THION36 - Plant thionin family protein precursor, expressed FN3092-S Chr3 28035001 28059000 0 0 Deletion 23999 LOC_Os03g49280 THION37 - Plant thionin family protein precursor, putative, expressed FN3092-S Chr3 28043010 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3092-S Chr3 30115001 30174000 0 0 Deletion 58999 LOC_Os03g52490 nucleic acid binding protein, putative, expressed FN3092-S Chr3 30115001 30174000 0 0 Deletion 58999 LOC_Os03g52500 expressed protein FN3092-S Chr3 30115001 30174000 0 0 Deletion 58999 LOC_Os03g52510 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr3 30115001 30174000 0 0 Deletion 58999 LOC_Os03g52520 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr3 30115001 30174000 0 0 Deletion 58999 LOC_Os03g52530 retrotransposon protein, putative, Ty3-gypsy subclass FN3092-S Chr3 30115001 30174000 0 0 Deletion 58999 LOC_Os03g52540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr3 30115001 30174000 0 0 Deletion 58999 LOC_Os03g52550 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr3 30115001 30174000 0 0 Deletion 58999 LOC_Os03g52560 glycosyl hydrolases, putative, expressed FN3092-S Chr3 30115001 30174000 0 0 Deletion 58999 LOC_Os03g52570 glycerol-3-phosphate acyltransferase, putative, expressed FN3092-S Chr3 30115001 30174000 0 0 Deletion 58999 LOC_Os03g52594 CCR4-NOT transcription factor, putative, expressed FN3092-S Chr3 30788001 30801000 0 0 Deletion 12999 LOC_Os03g53700 PHD-finger domain containing protein, putative, expressed FN3092-S Chr3 30788001 30801000 0 0 Deletion 12999 LOC_Os03g53710 aldose 1-epimerase, putative, expressed FN3092-S Chr3 30788001 30801000 0 0 Deletion 12999 LOC_Os03g53990 expressed protein FN3092-S Chr3 32216001 32233000 0 0 Deletion 16999 LOC_Os03g56560 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr3 32216001 32233000 0 0 Deletion 16999 LOC_Os03g56566 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr3 32216001 32233000 0 0 Deletion 16999 LOC_Os03g56572 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr3 34681001 34698000 0 0 Deletion 16999 LOC_Os03g61060 protein kinase domain containing protein, expressed FN3092-S Chr3 34681001 34698000 0 0 Deletion 16999 LOC_Os03g61070 expressed protein FN3092-S Chr3 34681001 34698000 0 0 Deletion 16999 LOC_Os03g62100 MYB family transcription factor, putative, expressed FN3092-S Chr3 35190001 35219000 0 0 Deletion 28999 LOC_Os03g62110 nicotinate phosphoribosyltransferase family domain containing protein, expressed FN3092-S Chr3 35190001 35219000 0 0 Deletion 28999 LOC_Os03g62120 heat shock protein DnaJ, putative, expressed FN3092-S Chr3 35190001 35219000 0 0 Deletion 28999 LOC_Os03g62130 heat shock protein DnaJ, putative, expressed FN3092-S Chr3 35190001 35219000 0 0 Deletion 28999 LOC_Os03g62140 heat shock protein DnaJ, putative, expressed FN3092-S Chr3 35190001 35219000 0 0 Deletion 28999 LOC_Os03g62150 heat shock protein DnaJ, putative, expressed FN3092-S Chr3 35190001 35219000 0 0 Deletion 28999 LOC_Os03g62160 expressed protein FN3092-S Chr3 35190001 35219000 0 0 Deletion 28999 LOC_Os03g62170 cyclase/dehydrase family protein, expressed FN3092-S Chr3 35190001 35219000 0 0 Deletion 28999 LOC_Os03g62180 lectin protein kinase family protein, putative, expressed FN3092-S Chr3 6276001 6294000 0 0 Deletion 17999 LOC_Os03g11980 beta-hexosaminidase precursor, putative, expressed FN3092-S Chr3 6276001 6294000 0 0 Deletion 17999 LOC_Os03g11990 bolA, putative, expressed FN3092-S Chr3 6276001 6294000 0 0 Deletion 17999 LOC_Os03g12000 DEAD-box ATP-dependent RNA helicase, putative, expressed FN3092-S Chr3 6276001 6294000 0 0 Deletion 17999 LOC_Os03g12010 expressed protein FN3092-S Chr3 6276001 6294000 0 0 Deletion 17999 LOC_Os03g13830 pentatricopeptide, putative, expressed FN3092-S Chr4 10587001 10616000 0 0 Deletion 28999 LOC_Os04g19080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr4 10587001 10616000 0 0 Deletion 28999 LOC_Os04g19090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr4 10587001 10616000 0 0 Deletion 28999 LOC_Os04g19100 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr4 10587001 10616000 0 0 Deletion 28999 LOC_Os04g19114 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr4 10728001 10778000 0 0 Deletion 49999 LOC_Os04g19290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr4 10728001 10778000 0 0 Deletion 49999 LOC_Os04g19300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr4 10728001 10778000 0 0 Deletion 49999 LOC_Os04g19310 expressed protein FN3092-S Chr4 10728001 10778000 0 0 Deletion 49999 LOC_Os04g19320 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr4 10728001 10778000 0 0 Deletion 49999 LOC_Os04g19330 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr4 10728001 10778000 0 0 Deletion 49999 LOC_Os04g19340 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr4 10728001 10778000 0 0 Deletion 49999 LOC_Os04g19350 retrotransposon protein, putative, Ty3-gypsy subclass FN3092-S Chr4 10728001 10778000 0 0 Deletion 49999 LOC_Os04g19360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr4 11700805 11700805 0 0 Insertion 1 downstream_gene_variant HET FN3092-S Chr4 12068001 12094000 0 0 Deletion 25999 LOC_Os04g21370 expressed protein FN3092-S Chr4 12068001 12094000 0 0 Deletion 25999 LOC_Os04g21380 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr4 12068001 12094000 0 0 Deletion 25999 LOC_Os04g21390 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr4 12068001 12094000 0 0 Deletion 25999 LOC_Os04g21400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr4 12299001 12322000 0 0 Deletion 22999 LOC_Os04g21750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr4 12299001 12322000 0 0 Deletion 22999 LOC_Os04g21760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr4 12299001 12322000 0 0 Deletion 22999 LOC_Os04g21770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr4 13129001 13164000 0 0 Deletion 34999 LOC_Os04g23120 hypothetical protein FN3092-S Chr4 13129001 13164000 0 0 Deletion 34999 LOC_Os04g23130 expressed protein FN3092-S Chr4 13129001 13164000 0 0 Deletion 34999 LOC_Os04g23140 expressed protein FN3092-S Chr4 13257001 13296000 0 0 Deletion 38999 LOC_Os04g23250 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr4 13257001 13296000 0 0 Deletion 38999 LOC_Os04g23260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr4 13257001 13296000 0 0 Deletion 38999 LOC_Os04g23270 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr4 13257001 13296000 0 0 Deletion 38999 LOC_Os04g23280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr4 13257001 13296000 0 0 Deletion 38999 LOC_Os04g23290 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr4 13257001 13296000 0 0 Deletion 38999 LOC_Os04g23530 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr4 135001 163000 0 0 Deletion 27999 LOC_Os04g01190 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr4 135001 163000 0 0 Deletion 27999 LOC_Os04g01200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr4 135001 163000 0 0 Deletion 27999 LOC_Os04g01210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr4 14237001 14257000 0 0 Deletion 19999 LOC_Os04g24790 OsMADS81 - MADS-box family gene with M-gamma type-box, expressed FN3092-S Chr4 14237001 14257000 0 0 Deletion 19999 LOC_Os04g24800 OsMADS82 - MADS-box family gene with M-gamma type-box, expressed FN3092-S Chr4 14237001 14257000 0 0 Deletion 19999 LOC_Os04g24804 expressed protein FN3092-S Chr4 1439001 1456000 0 0 Deletion 16999 LOC_Os04g03360 jacalin-like lectin domain containing protein, expressed FN3092-S Chr4 1439001 1456000 0 0 Deletion 16999 LOC_Os04g03370 cysteine-rich receptor-like protein kinase 41 precursor, putative, expressed FN3092-S Chr4 1439001 1456000 0 0 Deletion 16999 LOC_Os04g03380 legume lectins beta domain containing protein, putative, expressed FN3092-S Chr4 1439001 1456000 0 0 Deletion 16999 LOC_Os04g03390 expressed protein FN3092-S Chr4 1439001 1456000 0 0 Deletion 16999 LOC_Os04g03400 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr4 1439001 1456000 0 0 Deletion 16999 LOC_Os04g03440 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr4 1477001 1506000 0 0 Deletion 28999 LOC_Os04g03450 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr4 1477001 1506000 0 0 Deletion 28999 LOC_Os04g03460 retrotransposon protein, putative, unclassified FN3092-S Chr4 1477001 1506000 0 0 Deletion 28999 LOC_Os04g03470 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr4 1477001 1506000 0 0 Deletion 28999 LOC_Os04g03480 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr4 15053001 15090000 0 0 Deletion 36999 LOC_Os04g25900 go35 NBS-LRR, putative, expressed FN3092-S Chr4 15053001 15090000 0 0 Deletion 36999 LOC_Os04g25910 hypothetical protein FN3092-S Chr4 15053001 15090000 0 0 Deletion 36999 LOC_Os04g25920 OsMADS85 - MADS-box family gene with M-gamma type-box, expressed FN3092-S Chr4 15053001 15090000 0 0 Deletion 36999 LOC_Os04g25930 OsMADS99 - MADS-box family gene with M-gamma type-box FN3092-S Chr4 15053001 15090000 0 0 Deletion 36999 LOC_Os04g25940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr4 15053001 15090000 0 0 Deletion 36999 LOC_Os04g26950 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr4 15254471 15254488 0 0 Deletion 17 upstream_gene_variant HET FN3092-S Chr4 15896339 15896340 0 0 Deletion 1 downstream_gene_variant HET FN3092-S Chr4 15943001 15981000 0 0 Deletion 37999 LOC_Os04g26970 retrotransposon protein, putative, unclassified FN3092-S Chr4 15943001 15981000 0 0 Deletion 37999 LOC_Os04g26980 terpene synthase, putative, expressed FN3092-S Chr4 15943001 15981000 0 0 Deletion 37999 LOC_Os04g26994 retrotransposon protein, putative, unclassified FN3092-S Chr4 15943001 15981000 0 0 Deletion 37999 LOC_Os04g27060 oxidoreductase, aldo/keto reductase family protein, putative, expressed FN3092-S Chr4 16002001 16020000 0 0 Deletion 17999 LOC_Os04g27070 terpene synthase, putative, expressed FN3092-S Chr4 16002001 16020000 0 0 Deletion 17999 LOC_Os04g27080 hypothetical protein FN3092-S Chr4 16002001 16020000 0 0 Deletion 17999 LOC_Os04g27090 expressed protein FN3092-S Chr4 16002001 16020000 0 0 Deletion 17999 LOC_Os04g27092 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr4 16598001 16632000 0 0 Deletion 33999 LOC_Os04g28130 two-component response regulator, putative, expressed FN3092-S Chr4 16598001 16632000 0 0 Deletion 33999 LOC_Os04g28140 conserved hypothetical protein FN3092-S Chr4 16598001 16632000 0 0 Deletion 33999 LOC_Os04g28150 expressed protein FN3092-S Chr4 16598001 16632000 0 0 Deletion 33999 LOC_Os04g28160 response regulator receiver domain containing protein, expressed FN3092-S Chr4 16598001 16632000 0 0 Deletion 33999 LOC_Os04g28650 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr4 16993001 17017000 0 0 Deletion 23999 LOC_Os04g28690 fatty acyl coA reductase, putative, expressed FN3092-S Chr4 16993001 17017000 0 0 Deletion 23999 LOC_Os04g28700 retrotransposon protein, putative, unclassified FN3092-S Chr4 16993001 17017000 0 0 Deletion 23999 LOC_Os04g28710 hypothetical protein FN3092-S Chr4 16993001 17017000 0 0 Deletion 23999 LOC_Os04g28720 RALFL32 - Rapid ALkalinization Factor RALF family protein precursor, putative, expressed FN3092-S Chr4 17316001 17329000 0 0 Deletion 12999 LOC_Os04g29224 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr4 17316001 17329000 0 0 Deletion 12999 LOC_Os04g29290 retrotransposon protein, putative, unclassified FN3092-S Chr4 17369099 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3092-S Chr4 20149389 20149414 0 0 Deletion 25 INTERGENIC HOMO FN3092-S Chr4 21699001 21717000 0 0 Deletion 17999 LOC_Os04g35610 pentatricopeptide, putative, expressed FN3092-S Chr4 21699001 21717000 0 0 Deletion 17999 LOC_Os04g35620 expressed protein FN3092-S Chr4 21699001 21717000 0 0 Deletion 17999 LOC_Os04g35630 expressed protein FN3092-S Chr4 21699001 21717000 0 0 Deletion 17999 LOC_Os04g35640 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr4 21699001 21717000 0 0 Deletion 17999 LOC_Os04g37950 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed FN3092-S Chr4 23242585 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g39110 GASR4 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed FN3092-S Chr4 25083265 Chr1 18542519 0 Translocation 0 LOC_Os04g42399 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3092-S Chr4 25287148 25287149 0 0 Deletion 1 upstream_gene_variant HET FN3092-S Chr4 25697001 25743000 0 0 Deletion 45999 LOC_Os04g43420 PTAC5, putative, expressed FN3092-S Chr4 25697001 25743000 0 0 Deletion 45999 LOC_Os04g43430 pentatricopeptide, putative, expressed FN3092-S Chr4 25697001 25743000 0 0 Deletion 45999 LOC_Os04g43440 NB-ARC/LRR disease resistance protein, putative, expressed FN3092-S Chr4 25697001 25743000 0 0 Deletion 45999 LOC_Os04g43450 expressed protein FN3092-S Chr4 25697001 25743000 0 0 Deletion 45999 LOC_Os04g43464 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr4 25697001 25743000 0 0 Deletion 45999 LOC_Os04g43480 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr4 25697001 25743000 0 0 Deletion 45999 LOC_Os04g43490 CK1_CaseinKinase_1.7 - CK1 includes the casein kinase 1 kinases, expressed FN3092-S Chr4 25697001 25743000 0 0 Deletion 45999 LOC_Os04g43500 transposon protein, putative, unclassified FN3092-S Chr4 26074001 26113000 0 0 Deletion 38999 LOC_Os04g44000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr4 26074001 26113000 0 0 Deletion 38999 LOC_Os04g44010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr4 26074001 26113000 0 0 Deletion 38999 LOC_Os04g44020 expressed protein FN3092-S Chr4 26074001 26113000 0 0 Deletion 38999 LOC_Os04g44030 PPR repeat domain containing protein, putative, expressed FN3092-S Chr4 26074001 26113000 0 0 Deletion 38999 LOC_Os04g44050 expressed protein FN3092-S Chr4 26074001 26113000 0 0 Deletion 38999 LOC_Os04g44060 aquaporin protein, putative, expressed FN3092-S Chr4 26074001 26113000 0 0 Deletion 38999 LOC_Os04g44070 expressed protein FN3092-S Chr4 26074001 26113000 0 0 Deletion 38999 LOC_Os04g44080 expressed protein FN3092-S Chr4 26074001 26113000 0 0 Deletion 38999 LOC_Os04g44090 expressed protein FN3092-S Chr4 26074001 26113000 0 0 Deletion 38999 LOC_Os04g44100 expressed protein FN3092-S Chr4 27157086 27157086 0 0 Insertion 1 INTRON HOMO FN3092-S Chr4 27598001 27617000 0 0 Deletion 18999 LOC_Os04g46550 hypothetical protein FN3092-S Chr4 27598001 27617000 0 0 Deletion 18999 LOC_Os04g46560 lactate/malate dehydrogenase, putative, expressed FN3092-S Chr4 27598001 27617000 0 0 Deletion 18999 LOC_Os04g46570 growth regulator related protein, putative, expressed FN3092-S Chr4 27598001 27617000 0 0 Deletion 18999 LOC_Os04g46580 OsSPL7 - SBP-box gene family member, expressed FN3092-S Chr4 27689001 27710000 0 0 Deletion 20999 LOC_Os04g46700 ABC family transporter: toluene tolerance, putative, expressed FN3092-S Chr4 27689001 27710000 0 0 Deletion 20999 LOC_Os04g46710 thioesterase family protein, putative, expressed FN3092-S Chr4 27689001 27710000 0 0 Deletion 20999 LOC_Os04g46720 transposon protein, putative, unclassified FN3092-S Chr4 27689001 27710000 0 0 Deletion 20999 LOC_Os04g46730 thioesterase family protein, putative, expressed FN3092-S Chr4 27689001 27710000 0 0 Deletion 20999 LOC_Os04g46740 pectinesterase, putative, expressed FN3092-S Chr4 29166001 29180000 0 0 Deletion 13999 LOC_Os04g48910 retrotransposon protein, putative, Ty3-gypsy subclass FN3092-S Chr4 29166001 29180000 0 0 Deletion 13999 LOC_Os04g48920 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr4 29166001 29180000 0 0 Deletion 13999 LOC_Os04g48930 ferric-chelate reductase, putative, expressed FN3092-S Chr4 29166001 29180000 0 0 Deletion 13999 LOC_Os04g49260 heavy metal-associated domain containing protein, expressed FN3092-S Chr4 29346930 29346931 0 0 Deletion 1 INTERGENIC HOMO FN3092-S Chr4 29411001 29431000 0 0 Deletion 19999 LOC_Os04g49270 tRNA-splicing endonuclease positive effector-related, putative, expressed FN3092-S Chr4 29411001 29431000 0 0 Deletion 19999 LOC_Os04g49280 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr4 29411001 29431000 0 0 Deletion 19999 LOC_Os04g49290 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr4 29411001 29431000 0 0 Deletion 19999 LOC_Os04g49300 retrotransposon protein, putative, LINE subclass, expressed FN3092-S Chr4 30058001 30085000 0 0 Deletion 26999 LOC_Os04g50820 oligopeptide transporter, putative, expressed FN3092-S Chr4 30058001 30085000 0 0 Deletion 26999 LOC_Os04g50830 retrotransposon protein, putative, LINE subclass, expressed FN3092-S Chr4 30058001 30085000 0 0 Deletion 26999 LOC_Os04g50840 expressed protein FN3092-S Chr4 30058001 30085000 0 0 Deletion 26999 LOC_Os04g50850 aspartyl protease family, putative, expressed FN3092-S Chr4 30058001 30085000 0 0 Deletion 26999 LOC_Os04g50860 expressed protein FN3092-S Chr4 30058001 30085000 0 0 Deletion 26999 LOC_Os04g50864 expressed protein FN3092-S Chr4 30740001 30758000 0 0 Deletion 17999 LOC_Os04g51850 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr4 30740001 30758000 0 0 Deletion 17999 LOC_Os04g51860 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr4 30740001 30758000 0 0 Deletion 17999 LOC_Os04g51870 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr4 30740001 30758000 0 0 Deletion 17999 LOC_Os04g53370 acyltransferase, putative, expressed FN3092-S Chr4 3095001 3152000 0 0 Deletion 56999 LOC_Os04g05990 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr4 3095001 3152000 0 0 Deletion 56999 LOC_Os04g06000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr4 3095001 3152000 0 0 Deletion 56999 LOC_Os04g06010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr4 3095001 3152000 0 0 Deletion 56999 LOC_Os04g06020 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr4 3095001 3152000 0 0 Deletion 56999 LOC_Os04g06030 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr4 3095001 3152000 0 0 Deletion 56999 LOC_Os04g06050 expressed protein FN3092-S Chr4 3095001 3152000 0 0 Deletion 56999 LOC_Os04g06070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr4 3095001 3152000 0 0 Deletion 56999 LOC_Os04g06260 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr4 31483662 31483664 0 0 Deletion 2 upstream_gene_variant HET FN3092-S Chr4 34014887 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3092-S Chr4 34475001 34492000 0 0 Deletion 16999 LOC_Os04g57890 oligosaccharyl transferase, putative, expressed FN3092-S Chr4 34475001 34492000 0 0 Deletion 16999 LOC_Os04g58130 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed FN3092-S Chr4 34614001 34633000 0 0 Deletion 18999 LOC_Os04g58130 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed FN3092-S Chr4 34614001 34633000 0 0 Deletion 18999 LOC_Os04g58140 elongation factor Tu, putative, expressed FN3092-S Chr4 34614001 34633000 0 0 Deletion 18999 LOC_Os04g58150 transposon protein, putative, unclassified, expressed FN3092-S Chr4 3491447 3491447 0 0 Insertion 1 upstream_gene_variant HET FN3092-S Chr4 4052847 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3092-S Chr4 4981001 5007000 0 0 Deletion 25999 LOC_Os04g09360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr4 4981001 5007000 0 0 Deletion 25999 LOC_Os04g09370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr4 4981001 5007000 0 0 Deletion 25999 LOC_Os04g09380 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3092-S Chr4 4981001 5007000 0 0 Deletion 25999 LOC_Os04g09390 HEV3 - Hevein family protein precursor, expressed FN3092-S Chr4 5182001 5210000 0 0 Deletion 27999 LOC_Os04g09670 O-methyltransferase, putative, expressed FN3092-S Chr4 5182001 5210000 0 0 Deletion 27999 LOC_Os04g09680 caffeic acid 3-O-methyltransferase, putative, expressed FN3092-S Chr4 5182001 5210000 0 0 Deletion 27999 LOC_Os04g09690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr4 5182001 5210000 0 0 Deletion 27999 LOC_Os04g09700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr4 5182001 5210000 0 0 Deletion 27999 LOC_Os04g09710 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr4 5182001 5210000 0 0 Deletion 27999 LOC_Os04g09720 OsSCP22 - Putative Serine Carboxypeptidase homologue, expressed FN3092-S Chr4 6014303 6014306 0 0 Deletion 3 upstream_gene_variant HET FN3092-S Chr4 6531001 6551000 0 0 Deletion 19999 LOC_Os04g11930 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr4 6531001 6551000 0 0 Deletion 19999 LOC_Os04g12690 N-hydroxythioamide S-beta-glucosyltransferase, putative, expressed FN3092-S Chr4 7025001 7042000 0 0 Deletion 16999 LOC_Os04g12690 N-hydroxythioamide S-beta-glucosyltransferase, putative, expressed FN3092-S Chr4 7025001 7042000 0 0 Deletion 16999 LOC_Os04g12700 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr4 7025001 7042000 0 0 Deletion 16999 LOC_Os04g12710 indole-3-acetate beta-glucosyltransferase, putative, expressed FN3092-S Chr4 7025001 7042000 0 0 Deletion 16999 LOC_Os04g12720 indole-3-acetate beta-glucosyltransferase, putative, expressed FN3092-S Chr4 7025001 7042000 0 0 Deletion 16999 LOC_Os04g12730 expressed protein FN3092-S Chr4 7025001 7042000 0 0 Deletion 16999 LOC_Os04g12880 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr4 7472624 7472624 0 0 Insertion 2 upstream_gene_variant HET FN3092-S Chr4 7487955 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3092-S Chr4 8179604 8179605 0 0 Deletion 1 intron_variant HET FN3092-S Chr4 8604691 8604703 0 0 Deletion 12 disruptive_inframe_deletion HET LOC_Os04g15850 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr4 8769001 8817000 0 0 Deletion 47999 LOC_Os04g16150 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr4 8769001 8817000 0 0 Deletion 47999 LOC_Os04g16160 expressed protein FN3092-S Chr4 8769001 8817000 0 0 Deletion 47999 LOC_Os04g16170 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr4 8769001 8817000 0 0 Deletion 47999 LOC_Os04g16180 retrotransposon protein, putative, unclassified FN3092-S Chr4 8769001 8817000 0 0 Deletion 47999 LOC_Os04g16190 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr4 8769001 8817000 0 0 Deletion 47999 LOC_Os04g16200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr4 8769001 8817000 0 0 Deletion 47999 LOC_Os04g16220 retrotransposon protein, putative, Ty3-gypsy subclass FN3092-S Chr4 8769001 8817000 0 0 Deletion 47999 LOC_Os04g16230 expressed protein FN3092-S Chr4 8954973 8954973 0 0 Insertion 1 upstream_gene_variant HET FN3092-S Chr5 1031001 1063000 0 0 Deletion 31999 LOC_Os05g02860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr5 1031001 1063000 0 0 Deletion 31999 LOC_Os05g02870 white-brown complex homolog protein, putative, expressed FN3092-S Chr5 1031001 1063000 0 0 Deletion 31999 LOC_Os05g02880 splicing factor, arginine/serine-rich 7, putative, expressed FN3092-S Chr5 1031001 1063000 0 0 Deletion 31999 LOC_Os05g02890 white-brown complex homolog protein 16, putative, expressed FN3092-S Chr5 1031001 1063000 0 0 Deletion 31999 LOC_Os05g02900 expressed protein FN3092-S Chr5 10322001 10359000 0 0 Deletion 36999 LOC_Os05g17960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr5 10322001 10359000 0 0 Deletion 36999 LOC_Os05g17970 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr5 10322001 10359000 0 0 Deletion 36999 LOC_Os05g17980 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr5 10322001 10359000 0 0 Deletion 36999 LOC_Os05g17990 expressed protein FN3092-S Chr5 10322001 10359000 0 0 Deletion 36999 LOC_Os05g18000 retrotransposon protein, putative, LINE subclass, expressed FN3092-S Chr5 10626476 10626480 0 0 Deletion 4 intergenic_region HET FN3092-S Chr5 11098820 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3092-S Chr5 11639001 11654000 0 0 Deletion 14999 LOC_Os05g20320 expressed protein FN3092-S Chr5 12631001 12682000 0 0 Deletion 50999 LOC_Os05g22330 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr5 12631001 12682000 0 0 Deletion 50999 LOC_Os05g22340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr5 12631001 12682000 0 0 Deletion 50999 LOC_Os05g22350 retrotransposon, putative, centromere-specific, expressed FN3092-S Chr5 12631001 12682000 0 0 Deletion 50999 LOC_Os05g22360 hypothetical protein FN3092-S Chr5 12631001 12682000 0 0 Deletion 50999 LOC_Os05g22370 N-acetylglucosaminyl transferase component, putative, expressed FN3092-S Chr5 12952156 12952156 0 0 Insertion 1 upstream_gene_variant HET FN3092-S Chr5 13040001 13076000 0 0 Deletion 35999 LOC_Os05g22920 digestive organ expansion factor, putative, expressed FN3092-S Chr5 13040001 13076000 0 0 Deletion 35999 LOC_Os05g22930 CAAX amino terminal protease family protein, putative, expressed FN3092-S Chr5 13040001 13076000 0 0 Deletion 35999 LOC_Os05g22940 acetyl-CoA carboxylase, putative, expressed FN3092-S Chr5 14100001 14117000 0 0 Deletion 16999 LOC_Os05g24420 retrotransposon, putative, centromere-specific, expressed FN3092-S Chr5 14100001 14117000 0 0 Deletion 16999 LOC_Os05g24430 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3092-S Chr5 14100001 14117000 0 0 Deletion 16999 LOC_Os05g24440 retrotransposon protein, putative, unclassified FN3092-S Chr5 14100001 14117000 0 0 Deletion 16999 LOC_Os05g24450 hypothetical protein FN3092-S Chr5 14189204 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3092-S Chr5 14491001 14518000 0 0 Deletion 26999 LOC_Os05g25030 expressed protein FN3092-S Chr5 14491001 14518000 0 0 Deletion 26999 LOC_Os05g25050 expressed protein FN3092-S Chr5 14491001 14518000 0 0 Deletion 26999 LOC_Os05g25060 PPR repeat domain containing protein, putative, expressed FN3092-S Chr5 14491001 14518000 0 0 Deletion 26999 LOC_Os05g25070 expressed protein FN3092-S Chr5 14491001 14518000 0 0 Deletion 26999 LOC_Os05g25075 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr5 14491001 14518000 0 0 Deletion 26999 LOC_Os05g25390 tyrosine protein kinase domain containing protein, putative, expressed FN3092-S Chr5 14752001 14765000 0 0 Deletion 12999 LOC_Os05g25850 superoxide dismutase, mitochondrial precursor, putative, expressed FN3092-S Chr5 15319001 15350000 0 0 Deletion 30999 LOC_Os05g26340 retrotransposon protein, putative, Ty3-gypsy subclass FN3092-S Chr5 15319001 15350000 0 0 Deletion 30999 LOC_Os05g26350 PROLM4 - Prolamin precursor, expressed FN3092-S Chr5 15319001 15350000 0 0 Deletion 30999 LOC_Os05g26368 prolamin precursor, putative, expressed FN3092-S Chr5 15319001 15350000 0 0 Deletion 30999 LOC_Os05g26377 PROLM9 - Prolamin precursor, expressed FN3092-S Chr5 15319001 15350000 0 0 Deletion 30999 LOC_Os05g26386 prolamin precursor, putative, expressed FN3092-S Chr5 15319001 15350000 0 0 Deletion 30999 LOC_Os05g26410 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr5 15513001 15535000 0 0 Deletion 21999 LOC_Os05g26730 retrotransposon protein, putative, LINE subclass, expressed FN3092-S Chr5 15513001 15535000 0 0 Deletion 21999 LOC_Os05g26740 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr5 15513001 15535000 0 0 Deletion 21999 LOC_Os05g26750 PROLM17 - Prolamin precursor, expressed FN3092-S Chr5 15513001 15535000 0 0 Deletion 21999 LOC_Os05g26760 expressed protein FN3092-S Chr5 15513001 15535000 0 0 Deletion 21999 LOC_Os05g26770 PROLM18 - Prolamin precursor, expressed FN3092-S Chr5 15513001 15535000 0 0 Deletion 21999 LOC_Os05g26890 G-protein alpha subunit, putative, expressed FN3092-S Chr5 17404001 17426000 0 0 Deletion 21999 LOC_Os05g30090 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr5 17404001 17426000 0 0 Deletion 21999 LOC_Os05g30100 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr5 17562409 17562439 0 0 Deletion 30 upstream_gene_variant HET FN3092-S Chr5 19550001 19573000 0 0 Deletion 22999 LOC_Os05g33340 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr5 19550001 19573000 0 0 Deletion 22999 LOC_Os05g33620 expressed protein FN3092-S Chr5 20879001 20893000 0 0 Deletion 13999 LOC_Os05g35170 no apical meristem protein, putative, expressed FN3092-S Chr5 20879001 20893000 0 0 Deletion 13999 LOC_Os05g35180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr5 21831001 21901000 0 0 Deletion 69999 LOC_Os05g37330 60S acidic ribosomal protein, putative, expressed FN3092-S Chr5 21831001 21901000 0 0 Deletion 69999 LOC_Os05g37340 expressed protein FN3092-S Chr5 21831001 21901000 0 0 Deletion 69999 LOC_Os05g37350 hhH-GPD superfamily base excision DNA repair protein, expressed FN3092-S Chr5 21831001 21901000 0 0 Deletion 69999 LOC_Os05g37360 hypothetical protein FN3092-S Chr5 21831001 21901000 0 0 Deletion 69999 LOC_Os05g37370 retrotransposon protein, putative, unclassified FN3092-S Chr5 21831001 21901000 0 0 Deletion 69999 LOC_Os05g37380 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr5 21831001 21901000 0 0 Deletion 69999 LOC_Os05g37390 G10 protein, putative, expressed FN3092-S Chr5 21831001 21901000 0 0 Deletion 69999 LOC_Os05g37400 expressed protein FN3092-S Chr5 21831001 21901000 0 0 Deletion 69999 LOC_Os05g37410 hhH-GPD superfamily base excision DNA repair protein, expressed FN3092-S Chr5 21831001 21901000 0 0 Deletion 69999 LOC_Os05g37420 expressed protein FN3092-S Chr5 21831001 21901000 0 0 Deletion 69999 LOC_Os05g37590 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr5 22926001 22950000 0 0 Deletion 23999 LOC_Os05g39110 selT-like protein precursor, putative, expressed FN3092-S Chr5 22926001 22950000 0 0 Deletion 23999 LOC_Os05g39120 expressed protein FN3092-S Chr5 22926001 22950000 0 0 Deletion 23999 LOC_Os05g39130 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr5 23700001 23717000 0 0 Deletion 16999 LOC_Os05g40340 expressed protein FN3092-S Chr5 23700001 23717000 0 0 Deletion 16999 LOC_Os05g40350 expressed protein FN3092-S Chr5 23700001 23717000 0 0 Deletion 16999 LOC_Os05g40360 expressed protein FN3092-S Chr5 24506001 24524000 0 0 Deletion 17999 LOC_Os05g41860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr5 24506001 24524000 0 0 Deletion 17999 LOC_Os05g41870 glycine-rich cell wall protein, putative, expressed FN3092-S Chr5 24506001 24524000 0 0 Deletion 17999 LOC_Os05g41880 mutS domain V family protein, expressed FN3092-S Chr5 24506001 24524000 0 0 Deletion 17999 LOC_Os05g42930 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr5 26832001 26858000 0 0 Deletion 25999 LOC_Os05g46280 expressed protein FN3092-S Chr5 26832001 26858000 0 0 Deletion 25999 LOC_Os05g46290 T-complex protein, putative, expressed FN3092-S Chr5 26832001 26858000 0 0 Deletion 25999 LOC_Os05g46300 OsFBX172 - F-box domain containing protein, expressed FN3092-S Chr5 26832001 26858000 0 0 Deletion 25999 LOC_Os05g46310 expressed protein FN3092-S Chr5 26832001 26858000 0 0 Deletion 25999 LOC_Os05g46320 OsFBX173 - F-box domain containing protein, expressed FN3092-S Chr5 26832001 26858000 0 0 Deletion 25999 LOC_Os05g46330 MYB family transcription factor, putative, expressed FN3092-S Chr5 26832001 26858000 0 0 Deletion 25999 LOC_Os05g47580 expressed protein FN3092-S Chr5 28620650 28620651 0 0 Deletion 1 INTRON HET FN3092-S Chr5 3469001 3476000 0 0 Deletion 6999 LOC_Os05g07070 zinc finger, C3HC4 type domain containing protein, expressed FN3092-S Chr5 5830001 5841000 0 0 Deletion 10999 LOC_Os05g10770 transcription factor jumonji, putative, expressed FN3092-S Chr5 6558001 6570000 0 0 Deletion 11999 LOC_Os05g11590 expressed protein FN3092-S Chr5 6558001 6570000 0 0 Deletion 11999 LOC_Os05g11740 hypothetical protein FN3092-S Chr5 6668001 6696000 0 0 Deletion 27999 LOC_Os05g11760 hypothetical protein FN3092-S Chr5 6668001 6696000 0 0 Deletion 27999 LOC_Os05g11770 ulp1 protease family protein, putative, expressed FN3092-S Chr5 6668001 6696000 0 0 Deletion 27999 LOC_Os05g11910 GDSL-like lipase/acylhydrolase, putative, expressed FN3092-S Chr5 7860001 7894000 0 0 Deletion 33999 LOC_Os05g14080 expressed protein FN3092-S Chr5 7860001 7894000 0 0 Deletion 33999 LOC_Os05g14090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr5 7860001 7894000 0 0 Deletion 33999 LOC_Os05g14100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr5 7860001 7894000 0 0 Deletion 33999 LOC_Os05g14110 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr5 7860001 7894000 0 0 Deletion 33999 LOC_Os05g14120 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr5 7860001 7894000 0 0 Deletion 33999 LOC_Os05g14130 ZOS5-05 - C2H2 zinc finger protein, expressed FN3092-S Chr5 8229001 8251000 0 0 Deletion 21999 LOC_Os05g14540 hypothetical protein FN3092-S Chr5 8381001 8420000 0 0 Deletion 38999 LOC_Os05g14760 expressed protein FN3092-S Chr5 8381001 8420000 0 0 Deletion 38999 LOC_Os05g14770 expressed protein FN3092-S Chr5 8381001 8420000 0 0 Deletion 38999 LOC_Os05g14780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr5 8381001 8420000 0 0 Deletion 38999 LOC_Os05g14790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr5 8381001 8420000 0 0 Deletion 38999 LOC_Os05g14800 cycloartenol synthase, putative, expressed FN3092-S Chr5 8381001 8420000 0 0 Deletion 38999 LOC_Os05g14810 retrotransposon protein, putative, Ty1-copia subclass FN3092-S Chr5 9010001 9033000 0 0 Deletion 22999 LOC_Os05g15970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr5 9010001 9033000 0 0 Deletion 22999 LOC_Os05g15980 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr5 9010001 9033000 0 0 Deletion 22999 LOC_Os05g15990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr5 9010001 9033000 0 0 Deletion 22999 LOC_Os05g16240 expressed protein FN3092-S Chr5 9195001 9222000 0 0 Deletion 26999 LOC_Os05g16260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr5 9195001 9222000 0 0 Deletion 26999 LOC_Os05g16270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr5 9195001 9222000 0 0 Deletion 26999 LOC_Os05g16280 transposon protein, putative, unclassified, expressed FN3092-S Chr5 9518001 9530000 0 0 Deletion 11999 LOC_Os05g16860 retrotransposon protein, putative, Ty3-gypsy subclass FN3092-S Chr5 9713001 9744000 0 0 Deletion 30999 LOC_Os05g17030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr5 9713001 9744000 0 0 Deletion 30999 LOC_Os05g17040 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr5 9713001 9744000 0 0 Deletion 30999 LOC_Os05g17050 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr5 9713001 9744000 0 0 Deletion 30999 LOC_Os05g17120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr6 11998001 12026000 0 0 Deletion 27999 LOC_Os06g20810 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr6 11998001 12026000 0 0 Deletion 27999 LOC_Os06g20820 expressed protein FN3092-S Chr6 11998001 12026000 0 0 Deletion 27999 LOC_Os06g20830 hypothetical protein FN3092-S Chr6 11998001 12026000 0 0 Deletion 27999 LOC_Os06g20860 paramyosin, putative, expressed FN3092-S Chr6 12046001 12073000 0 0 Deletion 26999 LOC_Os06g20860 paramyosin, putative, expressed FN3092-S Chr6 12046001 12073000 0 0 Deletion 26999 LOC_Os06g20870 pentatricopeptide repeat protein PPR1106-17, putative, expressed FN3092-S Chr6 12046001 12073000 0 0 Deletion 26999 LOC_Os06g20879 expressed protein FN3092-S Chr6 12116001 12155000 0 0 Deletion 38999 LOC_Os06g20970 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr6 12116001 12155000 0 0 Deletion 38999 LOC_Os06g20980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr6 12116001 12155000 0 0 Deletion 38999 LOC_Os06g20990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr6 12116001 12155000 0 0 Deletion 38999 LOC_Os06g21000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr6 12116001 12155000 0 0 Deletion 38999 LOC_Os06g21010 transposon protein, putative, unclassified, expressed FN3092-S Chr6 12116001 12155000 0 0 Deletion 38999 LOC_Os06g21020 methyltransferase, putative, expressed FN3092-S Chr6 12116001 12155000 0 0 Deletion 38999 LOC_Os06g21030 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr6 12116001 12155000 0 0 Deletion 38999 LOC_Os06g21040 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr6 12281001 12318000 0 0 Deletion 36999 LOC_Os06g21250 glycine rich protein family protein, putative, expressed FN3092-S Chr6 12281001 12318000 0 0 Deletion 36999 LOC_Os06g21260 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr6 12281001 12318000 0 0 Deletion 36999 LOC_Os06g21270 glycine rich protein family protein, putative, expressed FN3092-S Chr6 12281001 12318000 0 0 Deletion 36999 LOC_Os06g21280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr6 12281001 12318000 0 0 Deletion 36999 LOC_Os06g21290 expressed protein FN3092-S Chr6 12281001 12318000 0 0 Deletion 36999 LOC_Os06g21300 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr6 12281001 12318000 0 0 Deletion 36999 LOC_Os06g21310 glycine-rich cell wall structural protein precursor, putative, expressed FN3092-S Chr6 12281001 12318000 0 0 Deletion 36999 LOC_Os06g21320 hypothetical protein FN3092-S Chr6 13063001 13086000 0 0 Deletion 22999 LOC_Os06g22490 sphingolipid C4-hydroxylase SUR2, putative, expressed FN3092-S Chr6 13063001 13086000 0 0 Deletion 22999 LOC_Os06g22500 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr6 13063001 13086000 0 0 Deletion 22999 LOC_Os06g22510 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr6 13063001 13086000 0 0 Deletion 22999 LOC_Os06g22520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr6 13063001 13086000 0 0 Deletion 22999 LOC_Os06g22650 VHS and GAT domain containing protein, expressed FN3092-S Chr6 15100001 15118000 0 0 Deletion 17999 LOC_Os06g25860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr6 15100001 15118000 0 0 Deletion 17999 LOC_Os06g25890 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr6 15147001 15156000 0 0 Deletion 8999 LOC_Os06g27800 tm-1GCR237 protein, putative, expressed FN3092-S Chr6 16076001 16095000 0 0 Deletion 18999 LOC_Os06g28310 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr6 16076001 16095000 0 0 Deletion 18999 LOC_Os06g28320 retrotransposon, putative, centromere-specific FN3092-S Chr6 16076001 16095000 0 0 Deletion 18999 LOC_Os06g28330 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr6 17317001 17335000 0 0 Deletion 17999 LOC_Os06g30070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr6 17317001 17335000 0 0 Deletion 17999 LOC_Os06g30080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr6 19875001 19898000 0 0 Deletion 22999 LOC_Os06g34150 retrotransposon protein, putative, Ty3-gypsy subclass FN3092-S Chr6 19875001 19898000 0 0 Deletion 22999 LOC_Os06g34160 hypothetical protein FN3092-S Chr6 19875001 19898000 0 0 Deletion 22999 LOC_Os06g34230 retrotransposon protein, putative, unclassified FN3092-S Chr6 21256001 21297000 0 0 Deletion 40999 LOC_Os06g36270 receptor-like protein kinase 5 precursor, putative, expressed FN3092-S Chr6 21256001 21297000 0 0 Deletion 40999 LOC_Os06g36280 retrotransposon protein, putative, Ty1-copia subclass FN3092-S Chr6 21256001 21297000 0 0 Deletion 40999 LOC_Os06g36290 retrotransposon protein, putative, Ty1-copia subclass FN3092-S Chr6 21256001 21297000 0 0 Deletion 40999 LOC_Os06g36310 receptor-like protein kinase 5 precursor, putative, expressed FN3092-S Chr6 21256001 21297000 0 0 Deletion 40999 LOC_Os06g36320 receptor-like protein kinase 5 precursor, putative, expressed FN3092-S Chr6 21908762 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g37090 transposon protein, putative, unclassified, expressed FN3092-S Chr6 23321001 23333000 0 0 Deletion 11999 LOC_Os06g39310 retrotransposon protein, putative, unclassified FN3092-S Chr6 23321001 23333000 0 0 Deletion 11999 LOC_Os06g39320 retrotransposon protein, putative, unclassified FN3092-S Chr6 23321001 23333000 0 0 Deletion 11999 LOC_Os06g40180 phospholipase D, putative, expressed FN3092-S Chr6 24414001 24436000 0 0 Deletion 21999 LOC_Os06g40950 DNA-directed RNA polymerase I subunit RPA1, putative, expressed FN3092-S Chr6 24620001 24671000 0 0 Deletion 50999 LOC_Os06g41150 expressed protein FN3092-S Chr6 24620001 24671000 0 0 Deletion 50999 LOC_Os06g41160 expressed protein FN3092-S Chr6 24620001 24671000 0 0 Deletion 50999 LOC_Os06g41170 retrotransposon protein, putative, unclassified FN3092-S Chr6 24620001 24671000 0 0 Deletion 50999 LOC_Os06g41180 retrotransposon protein, putative, unclassified FN3092-S Chr6 24620001 24671000 0 0 Deletion 50999 LOC_Os06g41190 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3092-S Chr6 24620001 24671000 0 0 Deletion 50999 LOC_Os06g41200 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3092-S Chr6 24620001 24671000 0 0 Deletion 50999 LOC_Os06g41210 hypothetical protein FN3092-S Chr6 25113001 25123000 0 0 Deletion 9999 LOC_Os06g42350 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr6 25891354 25891354 0 0 Insertion 10 upstream_gene_variant HET FN3092-S Chr6 25891357 25891357 0 0 Insertion 8 upstream_gene_variant HET FN3092-S Chr6 27299001 27318000 0 0 Deletion 18999 LOC_Os06g45150 pollen allergen, putative, expressed FN3092-S Chr6 27299001 27318000 0 0 Deletion 18999 LOC_Os06g45160 pollen allergen, putative, expressed FN3092-S Chr6 27299001 27318000 0 0 Deletion 18999 LOC_Os06g45170 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr6 27299001 27318000 0 0 Deletion 18999 LOC_Os06g45180 pollen allergen, putative, expressed FN3092-S Chr6 2745001 2756000 0 0 Deletion 10999 LOC_Os06g05990 zinc finger family protein, putative, expressed FN3092-S Chr6 2745001 2756000 0 0 Deletion 10999 LOC_Os06g06850 resistance protein LR10, putative, expressed FN3092-S Chr6 3234001 3256000 0 0 Deletion 21999 LOC_Os06g06860 MLA1, putative, expressed FN3092-S Chr6 3234001 3256000 0 0 Deletion 21999 LOC_Os06g06870 zinc finger protein, putative, expressed FN3092-S Chr6 4465001 4483000 0 0 Deletion 17999 LOC_Os06g08890 glutamate receptor 3.4 precursor, putative, expressed FN3092-S Chr6 4465001 4483000 0 0 Deletion 17999 LOC_Os06g08900 glutamate receptor 2.6 precursor, putative, expressed FN3092-S Chr6 4465001 4483000 0 0 Deletion 17999 LOC_Os06g10460 expressed protein FN3092-S Chr6 6029001 6048000 0 0 Deletion 18999 LOC_Os06g11430 GRAM domain containing protein, expressed FN3092-S Chr6 6029001 6048000 0 0 Deletion 18999 LOC_Os06g11440 transposon protein, putative, Mutator sub-class, expressed FN3092-S Chr6 9115001 9162000 0 0 Deletion 46999 LOC_Os06g16030 amidase family protein, putative, expressed FN3092-S Chr6 9115001 9162000 0 0 Deletion 46999 LOC_Os06g16040 expressed protein FN3092-S Chr6 9115001 9162000 0 0 Deletion 46999 LOC_Os06g16050 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr6 9115001 9162000 0 0 Deletion 46999 LOC_Os06g16060 zinc finger, C3HC4 type domain containing protein, expressed FN3092-S Chr6 9115001 9162000 0 0 Deletion 46999 LOC_Os06g16070 receptor-like protein kinase 2 precursor, putative, expressed FN3092-S Chr6 9115001 9162000 0 0 Deletion 46999 LOC_Os06g16080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr6 9115001 9162000 0 0 Deletion 46999 LOC_Os06g16090 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr6 9115001 9162000 0 0 Deletion 46999 LOC_Os06g16260 OsSigP5 - Putative Type I Signal Peptidase homologue; employs a putative Ser/His catalytic dyad, expressed FN3092-S Chr6 9713001 9744000 0 0 Deletion 30999 LOC_Os06g16790 go35 NBS-LRR, putative, expressed FN3092-S Chr6 9713001 9744000 0 0 Deletion 30999 LOC_Os06g16810 polygalacturonase precursor, putative, expressed FN3092-S Chr6 9713001 9744000 0 0 Deletion 30999 LOC_Os06g16820 expressed protein FN3092-S Chr6 9713001 9744000 0 0 Deletion 30999 LOC_Os06g16950 expressed protein FN3092-S Chr7 10876001 10897000 0 0 Deletion 20999 LOC_Os07g18370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr7 10876001 10897000 0 0 Deletion 20999 LOC_Os07g18380 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr7 10876001 10897000 0 0 Deletion 20999 LOC_Os07g18390 retrotransposon protein, putative, unclassified FN3092-S Chr7 10876001 10897000 0 0 Deletion 20999 LOC_Os07g18400 retrotransposon protein, putative, unclassified FN3092-S Chr7 10876001 10897000 0 0 Deletion 20999 LOC_Os07g18500 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr7 13346001 13370000 0 0 Deletion 23999 LOC_Os07g23610 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr7 13346001 13370000 0 0 Deletion 23999 LOC_Os07g23620 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr7 13346001 13370000 0 0 Deletion 23999 LOC_Os07g23630 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr7 13346001 13370000 0 0 Deletion 23999 LOC_Os07g23640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr7 13346001 13370000 0 0 Deletion 23999 LOC_Os07g23660 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr7 13346001 13370000 0 0 Deletion 23999 LOC_Os07g23670 expressed protein FN3092-S Chr7 13598001 13611000 0 0 Deletion 12999 LOC_Os07g24000 AWPM-19-like membrane family protein, putative, expressed FN3092-S Chr7 13598001 13611000 0 0 Deletion 12999 LOC_Os07g24290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr7 14428494 14428496 0 0 Deletion 2 upstream_gene_variant HET FN3092-S Chr7 14673001 14706000 0 0 Deletion 32999 LOC_Os07g25600 expressed protein FN3092-S Chr7 14673001 14706000 0 0 Deletion 32999 LOC_Os07g25620 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr7 14673001 14706000 0 0 Deletion 32999 LOC_Os07g25630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr7 14673001 14706000 0 0 Deletion 32999 LOC_Os07g25640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr7 14673001 14706000 0 0 Deletion 32999 LOC_Os07g25650 expressed protein FN3092-S Chr7 15036001 15043000 0 0 Deletion 6999 LOC_Os07g27120 expressed protein FN3092-S Chr7 15970001 15990000 0 0 Deletion 19999 LOC_Os07g27420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr7 15970001 15990000 0 0 Deletion 19999 LOC_Os07g27430 expressed protein FN3092-S Chr7 17293001 17315000 0 0 Deletion 21999 LOC_Os07g29460 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3092-S Chr7 17293001 17315000 0 0 Deletion 21999 LOC_Os07g29470 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr7 17293001 17315000 0 0 Deletion 21999 LOC_Os07g29480 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr7 17354001 17382000 0 0 Deletion 27999 LOC_Os07g29570 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr7 17354001 17382000 0 0 Deletion 27999 LOC_Os07g29580 expressed protein FN3092-S Chr7 17354001 17382000 0 0 Deletion 27999 LOC_Os07g29590 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr7 17354001 17382000 0 0 Deletion 27999 LOC_Os07g29850 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr7 17697001 17738000 0 0 Deletion 40999 LOC_Os07g30030 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr7 17697001 17738000 0 0 Deletion 40999 LOC_Os07g30040 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr7 17697001 17738000 0 0 Deletion 40999 LOC_Os07g30050 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr7 17697001 17738000 0 0 Deletion 40999 LOC_Os07g30060 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr7 17697001 17738000 0 0 Deletion 40999 LOC_Os07g30070 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr7 17697001 17738000 0 0 Deletion 40999 LOC_Os07g30080 retrotransposon protein, putative, unclassified FN3092-S Chr7 21738001 21754000 0 0 Deletion 15999 LOC_Os07g36370 OsFBX247 - F-box domain containing protein, expressed FN3092-S Chr7 21738001 21754000 0 0 Deletion 15999 LOC_Os07g36390 PPR repeat containing protein, expressed FN3092-S Chr7 21738001 21754000 0 0 Deletion 15999 LOC_Os07g36750 CSLF3 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase, expressed FN3092-S Chr7 22015001 22045000 0 0 Deletion 29999 LOC_Os07g36750 CSLF3 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase, expressed FN3092-S Chr7 22015001 22045000 0 0 Deletion 29999 LOC_Os07g36760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr7 22015001 22045000 0 0 Deletion 29999 LOC_Os07g36770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr7 22015001 22045000 0 0 Deletion 29999 LOC_Os07g36780 S-domain receptor-like protein kinase, putative, expressed FN3092-S Chr7 22015001 22045000 0 0 Deletion 29999 LOC_Os07g36790 hypothetical protein FN3092-S Chr7 22207889 22207890 0 0 Deletion 1 upstream_gene_variant HET FN3092-S Chr7 22683001 22767000 0 0 Deletion 83999 LOC_Os07g37820 expressed protein FN3092-S Chr7 22683001 22767000 0 0 Deletion 83999 LOC_Os07g37830 peptidyl-prolyl cis-trans isomerase CYP37, chloroplast precursor, putative, expressed FN3092-S Chr7 22683001 22767000 0 0 Deletion 83999 LOC_Os07g37840 lipase, putative, expressed FN3092-S Chr7 22683001 22767000 0 0 Deletion 83999 LOC_Os07g37850 expressed protein FN3092-S Chr7 22683001 22767000 0 0 Deletion 83999 LOC_Os07g37860 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr7 22683001 22767000 0 0 Deletion 83999 LOC_Os07g37870 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr7 22683001 22767000 0 0 Deletion 83999 LOC_Os07g37880 hypothetical protein FN3092-S Chr7 22683001 22767000 0 0 Deletion 83999 LOC_Os07g37890 protein phosphatase 2C, putative, expressed FN3092-S Chr7 22683001 22767000 0 0 Deletion 83999 LOC_Os07g37900 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr7 22683001 22767000 0 0 Deletion 83999 LOC_Os07g37910 expressed protein FN3092-S Chr7 22683001 22767000 0 0 Deletion 83999 LOC_Os07g37920 no apical meristem protein, putative, expressed FN3092-S Chr7 22683001 22767000 0 0 Deletion 83999 LOC_Os07g37930 expressed protein FN3092-S Chr7 22683001 22767000 0 0 Deletion 83999 LOC_Os07g37940 retrotransposon protein, putative, unclassified FN3092-S Chr7 23644001 23654000 0 0 Deletion 9999 LOC_Os07g39730 ZCW7, putative, expressed FN3092-S Chr7 25833001 25851000 0 0 Deletion 17999 LOC_Os07g43110 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr7 25833001 25851000 0 0 Deletion 17999 LOC_Os07g43120 transposon protein, putative, unclassified, expressed FN3092-S Chr7 25833001 25851000 0 0 Deletion 17999 LOC_Os07g43130 expressed protein FN3092-S Chr7 25833001 25851000 0 0 Deletion 17999 LOC_Os07g43140 VQ domain containing protein, putative, expressed FN3092-S Chr7 25833001 25851000 0 0 Deletion 17999 LOC_Os07g43150 hypothetical protein FN3092-S Chr7 27380801 27380802 0 0 Deletion 1 downstream_gene_variant HET FN3092-S Chr7 4827001 4889000 0 0 Deletion 61999 LOC_Os07g09210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr7 4827001 4889000 0 0 Deletion 61999 LOC_Os07g09220 IPP transferase, putative, expressed FN3092-S Chr7 4827001 4889000 0 0 Deletion 61999 LOC_Os07g09230 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr7 4827001 4889000 0 0 Deletion 61999 LOC_Os07g09240 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr7 4827001 4889000 0 0 Deletion 61999 LOC_Os07g09250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr7 4827001 4889000 0 0 Deletion 61999 LOC_Os07g09270 expressed protein FN3092-S Chr7 4827001 4889000 0 0 Deletion 61999 LOC_Os07g09280 expressed protein FN3092-S Chr7 4827001 4889000 0 0 Deletion 61999 LOC_Os07g09290 hypothetical protein FN3092-S Chr7 4827001 4889000 0 0 Deletion 61999 LOC_Os07g09310 thioredoxin, putative, expressed FN3092-S Chr7 4827001 4889000 0 0 Deletion 61999 LOC_Os07g09320 FHA domain containing protein, putative, expressed FN3092-S Chr7 5020001 5070000 0 0 Deletion 49999 LOC_Os07g09520 expressed protein FN3092-S Chr7 5020001 5070000 0 0 Deletion 49999 LOC_Os07g09530 ankyrin repeat family protein, putative, expressed FN3092-S Chr7 5020001 5070000 0 0 Deletion 49999 LOC_Os07g09540 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr7 5020001 5070000 0 0 Deletion 49999 LOC_Os07g09560 ankyrin repeat family protein, putative, expressed FN3092-S Chr7 5020001 5070000 0 0 Deletion 49999 LOC_Os07g09570 hypothetical protein FN3092-S Chr7 6508001 6535000 0 0 Deletion 26999 LOC_Os07g11780 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr7 6508001 6535000 0 0 Deletion 26999 LOC_Os07g11790 terpene synthase, putative, expressed FN3092-S Chr7 6508001 6535000 0 0 Deletion 26999 LOC_Os07g11800 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr7 6508001 6535000 0 0 Deletion 26999 LOC_Os07g11810 retrotransposon protein, putative, Ty3-gypsy subclass FN3092-S Chr7 6760001 6822000 0 0 Deletion 61999 LOC_Os07g12110 eukaryotic translation initiation factor 3 subunit E, putative, expressed FN3092-S Chr7 6760001 6822000 0 0 Deletion 61999 LOC_Os07g12120 hypothetical protein FN3092-S Chr7 6760001 6822000 0 0 Deletion 61999 LOC_Os07g12130 MYB family transcription factor, putative, expressed FN3092-S Chr7 6760001 6822000 0 0 Deletion 61999 LOC_Os07g12140 PPR repeat domain containing protein, putative, expressed FN3092-S Chr7 6760001 6822000 0 0 Deletion 61999 LOC_Os07g12150 acyl carrier protein, putative, expressed FN3092-S Chr7 6760001 6822000 0 0 Deletion 61999 LOC_Os07g12160 KHG/KDPG aldolase, putative, expressed FN3092-S Chr7 6760001 6822000 0 0 Deletion 61999 LOC_Os07g12170 ADP-ribosylation factor, putative, expressed FN3092-S Chr7 6760001 6822000 0 0 Deletion 61999 LOC_Os07g12180 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr7 6760001 6822000 0 0 Deletion 61999 LOC_Os07g12190 retrotransposon protein, putative, unclassified FN3092-S Chr7 6983001 7008000 0 0 Deletion 24999 LOC_Os07g12450 expressed protein FN3092-S Chr7 7096001 7114000 0 0 Deletion 17999 LOC_Os07g12460 expressed protein FN3092-S Chr7 7096001 7114000 0 0 Deletion 17999 LOC_Os07g12470 expressed protein FN3092-S Chr7 7096001 7114000 0 0 Deletion 17999 LOC_Os07g12480 receptor protein kinase, putative, expressed FN3092-S Chr7 7096001 7114000 0 0 Deletion 17999 LOC_Os07g12750 retrotransposon protein, putative, unclassified FN3092-S Chr7 7862001 7876000 0 0 Deletion 13999 LOC_Os07g13700 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr7 7862001 7876000 0 0 Deletion 13999 LOC_Os07g13710 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr7 7862001 7876000 0 0 Deletion 13999 LOC_Os07g13719 hypothetical protein FN3092-S Chr7 7890001 7915000 0 0 Deletion 24999 LOC_Os07g13770 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed FN3092-S Chr7 7890001 7915000 0 0 Deletion 24999 LOC_Os07g13780 cytokinin-O-glucosyltransferase 2, putative, expressed FN3092-S Chr7 7890001 7915000 0 0 Deletion 24999 LOC_Os07g13790 hypothetical protein FN3092-S Chr7 7890001 7915000 0 0 Deletion 24999 LOC_Os07g13800 cytokinin-N-glucosyltransferase, putative, expressed FN3092-S Chr7 7890001 7915000 0 0 Deletion 24999 LOC_Os07g13810 cytokinin-N-glucosyltransferase 1, putative, expressed FN3092-S Chr7 7890001 7915000 0 0 Deletion 24999 LOC_Os07g14190 retrotransposon protein, putative, unclassified FN3092-S Chr7 8386001 8408000 0 0 Deletion 21999 LOC_Os07g14710 transposon protein, putative, Mariner sub-class, expressed FN3092-S Chr7 8386001 8408000 0 0 Deletion 21999 LOC_Os07g14720 expressed protein FN3092-S Chr7 8386001 8408000 0 0 Deletion 21999 LOC_Os07g14740 harpin-induced protein 1 domain containing protein, expressed FN3092-S Chr7 8589001 8620000 0 0 Deletion 30999 LOC_Os07g14970 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr7 8589001 8620000 0 0 Deletion 30999 LOC_Os07g14980 retrotransposon protein, putative, unclassified FN3092-S Chr7 8589001 8620000 0 0 Deletion 30999 LOC_Os07g14990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr7 8589001 8620000 0 0 Deletion 30999 LOC_Os07g15000 expressed protein FN3092-S Chr7 8589001 8620000 0 0 Deletion 30999 LOC_Os07g15010 hypothetical protein FN3092-S Chr7 8589001 8620000 0 0 Deletion 30999 LOC_Os07g15020 expressed protein FN3092-S Chr7 8589001 8620000 0 0 Deletion 30999 LOC_Os07g15030 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr7 8792001 8810000 0 0 Deletion 17999 LOC_Os07g15250 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr7 8792001 8810000 0 0 Deletion 17999 LOC_Os07g15260 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3092-S Chr7 8792001 8810000 0 0 Deletion 17999 LOC_Os07g15270 RNA-binding region RNP-1, putative, expressed FN3092-S Chr7 928001 949000 0 0 Deletion 20999 LOC_Os07g02590 expressed protein FN3092-S Chr7 928001 949000 0 0 Deletion 20999 LOC_Os07g02600 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3092-S Chr7 928001 949000 0 0 Deletion 20999 LOC_Os07g02610 expressed protein FN3092-S Chr7 928001 949000 0 0 Deletion 20999 LOC_Os07g02620 NB-ARC domain containing protein, expressed FN3092-S Chr7 928001 949000 0 0 Deletion 20999 LOC_Os07g02624 expressed protein FN3092-S Chr7 928001 949000 0 0 Deletion 20999 LOC_Os07g05140 transposon protein, putative, unclassified, expressed FN3092-S Chr7 9372001 9392000 0 0 Deletion 19999 LOC_Os07g16080 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr7 9372001 9392000 0 0 Deletion 19999 LOC_Os07g16090 retrotransposon protein, putative, unclassified FN3092-S Chr7 9372001 9392000 0 0 Deletion 19999 LOC_Os07g16100 retrotransposon protein, putative, unclassified FN3092-S Chr7 9372001 9392000 0 0 Deletion 19999 LOC_Os07g16110 retrotransposon protein, putative, Ty3-gypsy subclass FN3092-S Chr7 9372001 9392000 0 0 Deletion 19999 LOC_Os07g16120 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr8 10024209 10024260 0 0 Deletion 51 downstream_gene_variant HET FN3092-S Chr8 10404001 10463000 0 0 Deletion 58999 LOC_Os08g16990 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3092-S Chr8 10404001 10463000 0 0 Deletion 58999 LOC_Os08g17000 expressed protein FN3092-S Chr8 10404001 10463000 0 0 Deletion 58999 LOC_Os08g17010 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr8 10404001 10463000 0 0 Deletion 58999 LOC_Os08g17020 expressed protein FN3092-S Chr8 10404001 10463000 0 0 Deletion 58999 LOC_Os08g17030 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr8 10404001 10463000 0 0 Deletion 58999 LOC_Os08g17040 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr8 10404001 10463000 0 0 Deletion 58999 LOC_Os08g17050 expressed protein FN3092-S Chr8 10404001 10463000 0 0 Deletion 58999 LOC_Os08g17060 expressed protein FN3092-S Chr8 10404001 10463000 0 0 Deletion 58999 LOC_Os08g17070 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr8 10404001 10463000 0 0 Deletion 58999 LOC_Os08g17080 PPR repeat domain containing protein, putative, expressed FN3092-S Chr8 10404001 10463000 0 0 Deletion 58999 LOC_Os08g17090 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr8 10523790 Chr6 27322816 0 Translocation 0 FN3092-S Chr8 10979001 10995000 0 0 Deletion 15999 LOC_Os08g17890 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr8 10979001 10995000 0 0 Deletion 15999 LOC_Os08g17900 retrotransposon protein, putative, Ty3-gypsy subclass FN3092-S Chr8 10979001 10995000 0 0 Deletion 15999 LOC_Os08g17910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr8 10979001 10995000 0 0 Deletion 15999 LOC_Os08g17920 retrotransposon, putative, centromere-specific FN3092-S Chr8 11807001 11831000 0 0 Deletion 23999 LOC_Os08g19730 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr8 11807001 11831000 0 0 Deletion 23999 LOC_Os08g19740 retrotransposon protein, putative, Ty1-copia subclass FN3092-S Chr8 11807001 11831000 0 0 Deletion 23999 LOC_Os08g19750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr8 11807001 11831000 0 0 Deletion 23999 LOC_Os08g19760 retrotransposon protein, putative, Ty3-gypsy subclass FN3092-S Chr8 11807001 11831000 0 0 Deletion 23999 LOC_Os08g21100 retrotransposon protein, putative, unclassified FN3092-S Chr8 12324413 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3092-S Chr8 12612001 12634000 0 0 Deletion 21999 LOC_Os08g21124 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr8 12612001 12634000 0 0 Deletion 21999 LOC_Os08g21700 DCL, chloroplast precursor, putative, expressed FN3092-S Chr8 16009001 16031000 0 0 Deletion 21999 LOC_Os08g26270 expressed protein FN3092-S Chr8 16009001 16031000 0 0 Deletion 21999 LOC_Os08g26280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr8 16009001 16031000 0 0 Deletion 21999 LOC_Os08g26290 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr8 16009001 16031000 0 0 Deletion 21999 LOC_Os08g26400 retrotransposon, putative, centromere-specific, expressed FN3092-S Chr8 16084001 16102000 0 0 Deletion 17999 LOC_Os08g26409 hypothetical protein FN3092-S Chr8 16084001 16102000 0 0 Deletion 17999 LOC_Os08g26420 expressed protein FN3092-S Chr8 17587001 17604000 0 0 Deletion 16999 LOC_Os08g28750 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr8 17587001 17604000 0 0 Deletion 16999 LOC_Os08g28760 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr8 17587001 17604000 0 0 Deletion 16999 LOC_Os08g28770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr8 17777001 17837000 0 0 Deletion 59999 LOC_Os08g29040 protein kinase domain containing protein, expressed FN3092-S Chr8 17777001 17837000 0 0 Deletion 59999 LOC_Os08g29050 retrotransposon protein, putative, unclassified FN3092-S Chr8 17777001 17837000 0 0 Deletion 59999 LOC_Os08g29060 retrotransposon protein, putative, unclassified FN3092-S Chr8 17777001 17837000 0 0 Deletion 59999 LOC_Os08g29070 retrotransposon protein, putative, unclassified FN3092-S Chr8 17777001 17837000 0 0 Deletion 59999 LOC_Os08g29080 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr8 17777001 17837000 0 0 Deletion 59999 LOC_Os08g29090 hypothetical protein FN3092-S Chr8 17777001 17837000 0 0 Deletion 59999 LOC_Os08g29100 SAM domain family protein, expressed FN3092-S Chr8 17777001 17837000 0 0 Deletion 59999 LOC_Os08g29110 thioredoxin, putative, expressed FN3092-S Chr8 17777001 17837000 0 0 Deletion 59999 LOC_Os08g29124 expressed protein FN3092-S Chr8 18107001 18121000 0 0 Deletion 13999 LOC_Os08g29540 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr8 18107001 18121000 0 0 Deletion 13999 LOC_Os08g29550 retrotransposon protein, putative, unclassified FN3092-S Chr8 18107001 18121000 0 0 Deletion 13999 LOC_Os08g30310 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr8 18647001 18673000 0 0 Deletion 25999 LOC_Os08g30310 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr8 18647001 18673000 0 0 Deletion 25999 LOC_Os08g30320 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr8 18647001 18673000 0 0 Deletion 25999 LOC_Os08g30330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr8 21190001 21226000 0 0 Deletion 35999 LOC_Os08g33860 zinc finger, C3HC4 type, putative, expressed FN3092-S Chr8 21190001 21226000 0 0 Deletion 35999 LOC_Os08g33870 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr8 21190001 21226000 0 0 Deletion 35999 LOC_Os08g33880 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed FN3092-S Chr8 21190001 21226000 0 0 Deletion 35999 LOC_Os08g33890 expressed protein FN3092-S Chr8 21190001 21226000 0 0 Deletion 35999 LOC_Os08g33900 CAAX amino terminal protease family protein, putative, expressed FN3092-S Chr8 21190001 21226000 0 0 Deletion 35999 LOC_Os08g33910 no apical meristem protein, putative, expressed FN3092-S Chr8 21190001 21226000 0 0 Deletion 35999 LOC_Os08g33920 60S ribosomal protein L34, putative, expressed FN3092-S Chr8 22534632 Chr4 5916788 0 Translocation 0 FN3092-S Chr8 22942001 22957000 0 0 Deletion 14999 FN3092-S Chr8 23053001 23075000 0 0 Deletion 21999 LOC_Os08g36510 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr8 23053001 23075000 0 0 Deletion 21999 LOC_Os08g36520 peptidase aspartic family protein, putative, expressed FN3092-S Chr8 23053001 23075000 0 0 Deletion 21999 LOC_Os08g36530 aspartic proteinase nepenthesin precursor, putative, expressed FN3092-S Chr8 23053001 23075000 0 0 Deletion 21999 LOC_Os08g36540 aspartic proteinase nepenthesin-1 precursor, putative, expressed FN3092-S Chr8 23053001 23075000 0 0 Deletion 21999 LOC_Os08g36550 salt tolerant protein, putative, expressed FN3092-S Chr8 24732001 24755000 0 0 Deletion 22999 LOC_Os08g39170 expressed protein FN3092-S Chr8 24732001 24755000 0 0 Deletion 22999 LOC_Os08g39174 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3092-S Chr8 24732001 24755000 0 0 Deletion 22999 LOC_Os08g39180 OsWAK73 - OsWAK receptor-like protein kinase, expressed FN3092-S Chr8 24732001 24755000 0 0 Deletion 22999 LOC_Os08g40340 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr8 26456001 26481000 0 0 Deletion 24999 LOC_Os08g41910 Sua5/YciO/YrdC/YwlC family protein, putative, expressed FN3092-S Chr8 26456001 26481000 0 0 Deletion 24999 LOC_Os08g43120 Plant PDR ABC transporter associated domain containing protein, expressed FN3092-S Chr8 3055001 3095000 0 0 Deletion 39999 LOC_Os08g05700 expressed protein FN3092-S Chr8 3055001 3095000 0 0 Deletion 39999 LOC_Os08g05710 ABC transporter, ATP-binding protein, putative, expressed FN3092-S Chr8 3055001 3095000 0 0 Deletion 39999 LOC_Os08g05720 integral membrane protein, putative, expressed FN3092-S Chr8 3055001 3095000 0 0 Deletion 39999 LOC_Os08g05750 pentatricopeptide, putative, expressed FN3092-S Chr8 3055001 3095000 0 0 Deletion 39999 LOC_Os08g05770 expressed protein FN3092-S Chr8 3055001 3095000 0 0 Deletion 39999 LOC_Os08g05780 expressed protein FN3092-S Chr8 3055001 3095000 0 0 Deletion 39999 LOC_Os08g06330 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed FN3092-S Chr8 4484001 4499000 0 0 Deletion 14999 LOC_Os08g07950 NB-ARC domain containing protein, expressed FN3092-S Chr8 4484001 4499000 0 0 Deletion 14999 LOC_Os08g07960 mitotic checkpoint protein, putative, expressed FN3092-S Chr8 4484001 4499000 0 0 Deletion 14999 LOC_Os08g08750 expressed protein FN3092-S Chr8 5076001 5096000 0 0 Deletion 19999 LOC_Os08g08760 ubiquitin family protein, putative, expressed FN3092-S Chr8 5076001 5096000 0 0 Deletion 19999 LOC_Os08g08770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr8 5076001 5096000 0 0 Deletion 19999 LOC_Os08g08780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr8 5076001 5096000 0 0 Deletion 19999 LOC_Os08g08790 ubiquitin family protein, putative, expressed FN3092-S Chr8 5278001 5301000 0 0 Deletion 22999 LOC_Os08g09120 expressed protein FN3092-S Chr8 5278001 5301000 0 0 Deletion 22999 LOC_Os08g09130 conserved hypothetical protein FN3092-S Chr8 5278001 5301000 0 0 Deletion 22999 LOC_Os08g09140 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr8 5278001 5301000 0 0 Deletion 22999 LOC_Os08g09750 OsFBL44 - F-box domain and LRR containing protein, expressed FN3092-S Chr8 5634001 5658000 0 0 Deletion 23999 LOC_Os08g09760 OsFBX275 - F-box domain containing protein, expressed FN3092-S Chr8 5634001 5658000 0 0 Deletion 23999 LOC_Os08g09770 DnaK family protein, putative, expressed FN3092-S Chr8 5634001 5658000 0 0 Deletion 23999 LOC_Os08g09780 expressed protein FN3092-S Chr8 7059001 7088000 0 0 Deletion 28999 LOC_Os08g12020 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr8 7059001 7088000 0 0 Deletion 28999 LOC_Os08g12040 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr8 8369001 8380000 0 0 Deletion 10999 LOC_Os08g13970 transposon protein, putative, unclassified, expressed FN3092-S Chr8 8369001 8380000 0 0 Deletion 10999 LOC_Os08g14990 receptor-like protein kinase 2 precursor, putative, expressed FN3092-S Chr8 903001 922000 0 0 Deletion 18999 LOC_Os08g02350 expressed protein FN3092-S Chr8 9037001 9048000 0 0 Deletion 10999 LOC_Os08g14990 receptor-like protein kinase 2 precursor, putative, expressed FN3092-S Chr8 9534001 9566000 0 0 Deletion 31999 LOC_Os08g15720 retrotransposon protein, putative, LINE subclass, expressed FN3092-S Chr8 9534001 9566000 0 0 Deletion 31999 LOC_Os08g15730 hypothetical protein FN3092-S Chr8 9534001 9566000 0 0 Deletion 31999 LOC_Os08g15740 conserved hypothetical protein FN3092-S Chr8 9534001 9566000 0 0 Deletion 31999 LOC_Os08g15750 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr8 9534001 9566000 0 0 Deletion 31999 LOC_Os08g15760 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr8 9534001 9566000 0 0 Deletion 31999 LOC_Os08g15770 expressed protein FN3092-S Chr8 9534001 9566000 0 0 Deletion 31999 LOC_Os08g15780 DC1 domain, putative, expressed FN3092-S Chr8 9534001 9566000 0 0 Deletion 31999 LOC_Os08g15800 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr8 9624432 Chr7 8806232 0 Translocation 0 LOC_Os08g15830 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr9 1060504 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3092-S Chr9 11015001 11054000 0 0 Deletion 38999 LOC_Os09g18000 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN3092-S Chr9 11015001 11054000 0 0 Deletion 38999 LOC_Os09g18010 expressed protein FN3092-S Chr9 11015001 11054000 0 0 Deletion 38999 LOC_Os09g18020 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN3092-S Chr9 11268001 11301000 0 0 Deletion 32999 LOC_Os09g18370 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr9 11268001 11301000 0 0 Deletion 32999 LOC_Os09g18380 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr9 11268001 11301000 0 0 Deletion 32999 LOC_Os09g18390 flavonol synthase/flavanone 3-hydroxylase, putative, expressed FN3092-S Chr9 11268001 11301000 0 0 Deletion 32999 LOC_Os09g18400 expressed protein FN3092-S Chr9 11268001 11301000 0 0 Deletion 32999 LOC_Os09g18410 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr9 11268001 11301000 0 0 Deletion 32999 LOC_Os09g18420 hypothetical protein FN3092-S Chr9 11299730 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g18420 hypothetical protein FN3092-S Chr9 1188001 1213000 0 0 Deletion 24999 LOC_Os09g02680 retrotransposon protein, putative, unclassified FN3092-S Chr9 1188001 1213000 0 0 Deletion 24999 LOC_Os09g02690 expressed protein FN3092-S Chr9 1188001 1213000 0 0 Deletion 24999 LOC_Os09g02700 polyadenylate-binding protein, putative, expressed FN3092-S Chr9 13322001 13343000 0 0 Deletion 20999 LOC_Os09g22010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr9 13322001 13343000 0 0 Deletion 20999 LOC_Os09g22020 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr9 13322001 13343000 0 0 Deletion 20999 LOC_Os09g22030 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr9 13322001 13343000 0 0 Deletion 20999 LOC_Os09g22100 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr9 13387001 13451000 0 0 Deletion 63999 LOC_Os09g22100 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr9 13387001 13451000 0 0 Deletion 63999 LOC_Os09g22110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr9 13387001 13451000 0 0 Deletion 63999 LOC_Os09g22120 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr9 13387001 13451000 0 0 Deletion 63999 LOC_Os09g22130 expressed protein FN3092-S Chr9 13387001 13451000 0 0 Deletion 63999 LOC_Os09g22140 expressed protein FN3092-S Chr9 13387001 13451000 0 0 Deletion 63999 LOC_Os09g22150 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr9 13387001 13451000 0 0 Deletion 63999 LOC_Os09g22160 expressed protein FN3092-S Chr9 13387001 13451000 0 0 Deletion 63999 LOC_Os09g22170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr9 13387001 13451000 0 0 Deletion 63999 LOC_Os09g22190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr9 13387001 13451000 0 0 Deletion 63999 LOC_Os09g22200 transposon protein, putative, CACTA, En/Spm sub-class FN3092-S Chr9 13387001 13451000 0 0 Deletion 63999 LOC_Os09g22210 retrotransposon, putative, centromere-specific, expressed FN3092-S Chr9 13387001 13451000 0 0 Deletion 63999 LOC_Os09g22220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr9 13387001 13451000 0 0 Deletion 63999 LOC_Os09g22230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr9 13387001 13451000 0 0 Deletion 63999 LOC_Os09g22240 hypothetical protein FN3092-S Chr9 20914001 20950000 0 0 Deletion 35999 LOC_Os09g36260 expressed protein FN3092-S Chr9 20914001 20950000 0 0 Deletion 35999 LOC_Os09g36270 pantothenate kinase, putative, expressed FN3092-S Chr9 20914001 20950000 0 0 Deletion 35999 LOC_Os09g36280 glycosyl hydrolases family 17, putative, expressed FN3092-S Chr9 20914001 20950000 0 0 Deletion 35999 LOC_Os09g36290 Ser/Thr protein phosphatase family protein, putative, expressed FN3092-S Chr9 20914001 20950000 0 0 Deletion 35999 LOC_Os09g36300 OsLonP4 - Putative Lon protease homologue, expressed FN3092-S Chr9 20914001 20950000 0 0 Deletion 35999 LOC_Os09g37230 protein kinase family protein, putative, expressed FN3092-S Chr9 2171232 Chr2 10775902 0 Translocation 0 FN3092-S Chr9 22455001 22497000 0 0 Deletion 41999 LOC_Os09g39130 expressed protein FN3092-S Chr9 22455001 22497000 0 0 Deletion 41999 LOC_Os09g39140 vignain precursor, putative, expressed FN3092-S Chr9 22455001 22497000 0 0 Deletion 41999 LOC_Os09g39150 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr9 22455001 22497000 0 0 Deletion 41999 LOC_Os09g39160 thiol protease SEN102 precursor, putative, expressed FN3092-S Chr9 22455001 22497000 0 0 Deletion 41999 LOC_Os09g39170 cysteine proteinase COT44 precursor, putative, expressed FN3092-S Chr9 22455001 22497000 0 0 Deletion 41999 LOC_Os10g01790 transposon protein, putative, unclassified, expressed FN3092-S Chr9 225551 225551 0 0 Insertion 1 downstream_gene_variant HET FN3092-S Chr9 2820208 2820209 0 0 Deletion 1 intergenic_region HET FN3092-S Chr9 2823796 2823796 0 0 Insertion 1 intergenic_region HET FN3092-S Chr9 3302001 3336000 0 0 Deletion 33999 LOC_Os09g06900 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr9 3302001 3336000 0 0 Deletion 33999 LOC_Os09g06910 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr9 3302001 3336000 0 0 Deletion 33999 LOC_Os09g06920 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr9 3302001 3336000 0 0 Deletion 33999 LOC_Os09g07290 GDSL-like lipase/acylhydrolase, putative, expressed FN3092-S Chr9 3648509 3648511 0 0 Deletion 2 downstream_gene_variant HET FN3092-S Chr9 3937001 3947000 0 0 Deletion 9999 LOC_Os09g07790 hypothetical protein FN3092-S Chr9 3937001 3947000 0 0 Deletion 9999 LOC_Os09g07860 retrotransposon protein, putative, unclassified FN3092-S Chr9 3998001 4033000 0 0 Deletion 34999 LOC_Os09g07870 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr9 3998001 4033000 0 0 Deletion 34999 LOC_Os09g07880 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr9 3998001 4033000 0 0 Deletion 34999 LOC_Os09g07890 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr9 3998001 4033000 0 0 Deletion 34999 LOC_Os09g07900 ubiquitin-protein ligase 1, putative, expressed FN3092-S Chr9 4076001 4095000 0 0 Deletion 18999 LOC_Os09g07950 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr9 4076001 4095000 0 0 Deletion 18999 LOC_Os09g07960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr9 4076001 4095000 0 0 Deletion 18999 LOC_Os09g08100 cysteine proteinase inhibitor precursor, putative, expressed FN3092-S Chr9 4173001 4189000 0 0 Deletion 15999 LOC_Os09g08110 hypothetical protein FN3092-S Chr9 4173001 4189000 0 0 Deletion 15999 LOC_Os09g08170 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr9 4231001 4254000 0 0 Deletion 22999 LOC_Os09g08170 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr9 4231001 4254000 0 0 Deletion 22999 LOC_Os09g08180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr9 4231001 4254000 0 0 Deletion 22999 LOC_Os09g08190 sulfotransferase domain containing protein, expressed FN3092-S Chr9 4753001 4797000 0 0 Deletion 43999 LOC_Os09g08950 expressed protein FN3092-S Chr9 4753001 4797000 0 0 Deletion 43999 LOC_Os09g08960 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr9 4753001 4797000 0 0 Deletion 43999 LOC_Os09g08970 expressed protein FN3092-S Chr9 4753001 4797000 0 0 Deletion 43999 LOC_Os09g08980 retrotransposon protein, putative, unclassified FN3092-S Chr9 4753001 4797000 0 0 Deletion 43999 LOC_Os09g08990 cytochrome P450, putative, expressed FN3092-S Chr9 4753001 4797000 0 0 Deletion 43999 LOC_Os09g09000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr9 4893445 4893446 0 0 Deletion 1 upstream_gene_variant HET FN3092-S Chr9 603001 627000 0 0 Deletion 23999 LOC_Os09g01910 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr9 603001 627000 0 0 Deletion 23999 LOC_Os09g01930 expressed protein FN3092-S Chr9 6117001 6171000 0 0 Deletion 53999 LOC_Os09g11020 NBS-LRR disease resistance protein, putative, expressed FN3092-S Chr9 6117001 6171000 0 0 Deletion 53999 LOC_Os09g11030 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr9 6117001 6171000 0 0 Deletion 53999 LOC_Os09g11040 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr9 6117001 6171000 0 0 Deletion 53999 LOC_Os09g11050 expressed protein FN3092-S Chr9 6117001 6171000 0 0 Deletion 53999 LOC_Os09g11060 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr9 6117001 6171000 0 0 Deletion 53999 LOC_Os09g11070 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr9 6117001 6171000 0 0 Deletion 53999 LOC_Os09g11080 retrotransposon protein, putative, Ty3-gypsy subclass FN3092-S Chr9 6117001 6171000 0 0 Deletion 53999 LOC_Os09g11090 expressed protein FN3092-S Chr9 6117001 6171000 0 0 Deletion 53999 LOC_Os09g11100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr9 6117001 6171000 0 0 Deletion 53999 LOC_Os09g11110 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr9 6117001 6171000 0 0 Deletion 53999 LOC_Os09g11120 expressed protein FN3092-S Chr9 6117001 6171000 0 0 Deletion 53999 LOC_Os09g11130 hypothetical protein FN3092-S Chr9 6646001 6734000 0 0 Deletion 87999 LOC_Os09g11860 ulp1 protease family, C-terminal catalytic domain containing protein, expressed FN3092-S Chr9 6646001 6734000 0 0 Deletion 87999 LOC_Os09g11870 transposon protein, putative, unclassified, expressed FN3092-S Chr9 6646001 6734000 0 0 Deletion 87999 LOC_Os09g11880 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr9 6646001 6734000 0 0 Deletion 87999 LOC_Os09g11890 expressed protein FN3092-S Chr9 6646001 6734000 0 0 Deletion 87999 LOC_Os09g11900 expressed protein FN3092-S Chr9 6646001 6734000 0 0 Deletion 87999 LOC_Os09g11910 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3092-S Chr9 6646001 6734000 0 0 Deletion 87999 LOC_Os09g11920 transposon protein, putative, unclassified, expressed FN3092-S Chr9 6646001 6734000 0 0 Deletion 87999 LOC_Os09g11930 expressed protein FN3092-S Chr9 6646001 6734000 0 0 Deletion 87999 LOC_Os09g11940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3092-S Chr9 6646001 6734000 0 0 Deletion 87999 LOC_Os09g11950 retrotransposon protein, putative, unclassified, expressed FN3092-S Chr9 6687649 6687650 0 0 Deletion 1 downstream_gene_variant HET FN3092-S Chr9 7156001 7170000 0 0 Deletion 13999 LOC_Os09g12500 EMB1381, putative, expressed FN3092-S Chr9 7412797 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3092-S Chr9 7607388 7607390 0 0 Deletion 2 upstream_gene_variant HET