FN3094-S Chr1 11010001 11038000 0 0 Deletion 27999 LOC_Os01g19460 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr1 11010001 11038000 0 0 Deletion 27999 LOC_Os01g19470 nodal modulator 1 precursor, putative, expressed FN3094-S Chr1 11138001 11152000 0 0 Deletion 13999 LOC_Os01g19650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr1 11138001 11152000 0 0 Deletion 13999 LOC_Os01g19660 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr1 11138001 11152000 0 0 Deletion 13999 LOC_Os01g19970 MYB family transcription factor, putative, expressed FN3094-S Chr1 11517001 11539000 0 0 Deletion 21999 LOC_Os01g20710 expressed protein FN3094-S Chr1 11517001 11539000 0 0 Deletion 21999 LOC_Os01g20720 CC-NBS-LRR, putative, expressed FN3094-S Chr1 11517001 11539000 0 0 Deletion 21999 LOC_Os01g20970 invertase/pectin methylesterase inhibitor family protein, putative, expressed FN3094-S Chr1 11718001 11735000 0 0 Deletion 16999 LOC_Os01g21000 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr1 11718001 11735000 0 0 Deletion 16999 LOC_Os01g21010 expressed protein FN3094-S Chr1 11718001 11735000 0 0 Deletion 16999 LOC_Os01g21450 expressed protein FN3094-S Chr1 15326001 15340000 0 0 Deletion 13999 LOC_Os01g27470 ubiquitin family domain containing protein, expressed FN3094-S Chr1 15326001 15340000 0 0 Deletion 13999 LOC_Os01g27620 hypothetical protein FN3094-S Chr1 15890001 16020000 0 0 Deletion 129999 LOC_Os01g28380 retrotransposon, putative, centromere-specific FN3094-S Chr1 15890001 16020000 0 0 Deletion 129999 LOC_Os01g28390 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr1 15890001 16020000 0 0 Deletion 129999 LOC_Os01g28400 transposon protein, putative, unclassified, expressed FN3094-S Chr1 15890001 16020000 0 0 Deletion 129999 LOC_Os01g28410 expressed protein FN3094-S Chr1 15890001 16020000 0 0 Deletion 129999 LOC_Os01g28420 transposon protein, putative, CACTA, En/Spm sub-class FN3094-S Chr1 15890001 16020000 0 0 Deletion 129999 LOC_Os01g28440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr1 15890001 16020000 0 0 Deletion 129999 LOC_Os01g28450 SCP-like extracellular protein, expressed FN3094-S Chr1 15890001 16020000 0 0 Deletion 129999 LOC_Os01g28474 transferase family protein, putative, expressed FN3094-S Chr1 15890001 16020000 0 0 Deletion 129999 LOC_Os01g28490 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr1 15890001 16020000 0 0 Deletion 129999 LOC_Os01g28500 SCP-like extracellular protein, expressed FN3094-S Chr1 15890001 16020000 0 0 Deletion 129999 LOC_Os01g28510 expressed protein FN3094-S Chr1 15890001 16020000 0 0 Deletion 129999 LOC_Os01g28520 OsFBX8 - F-box domain containing protein, expressed FN3094-S Chr1 15890001 16020000 0 0 Deletion 129999 LOC_Os01g28530 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr1 15890001 16020000 0 0 Deletion 129999 LOC_Os01g28540 stress regulated protein, putative, expressed FN3094-S Chr1 15890001 16020000 0 0 Deletion 129999 LOC_Os01g28550 retrotransposon protein, putative, Ty1-copia subclass FN3094-S Chr1 15890001 16020000 0 0 Deletion 129999 LOC_Os01g28560 retrotransposon protein, putative, Ty1-copia subclass FN3094-S Chr1 15890001 16020000 0 0 Deletion 129999 LOC_Os01g28570 pentatricopeptide, putative, expressed FN3094-S Chr1 15890001 16020000 0 0 Deletion 129999 LOC_Os01g28580 expressed protein FN3094-S Chr1 15890001 16020000 0 0 Deletion 129999 LOC_Os01g28590 expressed protein FN3094-S Chr1 15890001 16020000 0 0 Deletion 129999 LOC_Os01g28600 exo70 exocyst complex subunit family protein, putative, expressed FN3094-S Chr1 15890001 16020000 0 0 Deletion 129999 LOC_Os01g28610 expressed protein FN3094-S Chr1 16349001 16387000 0 0 Deletion 37999 LOC_Os01g29190 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr1 16349001 16387000 0 0 Deletion 37999 LOC_Os01g29200 transposon protein, putative, unclassified FN3094-S Chr1 16349001 16387000 0 0 Deletion 37999 LOC_Os01g29210 hypothetical protein FN3094-S Chr1 16349001 16387000 0 0 Deletion 37999 LOC_Os01g29220 expressed protein FN3094-S Chr1 16349001 16387000 0 0 Deletion 37999 LOC_Os01g29230 expressed protein FN3094-S Chr1 16495001 16512000 0 0 Deletion 16999 LOC_Os01g29450 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr1 16495001 16512000 0 0 Deletion 16999 LOC_Os01g29469 dual specificity protein phosphatase, putative, expressed FN3094-S Chr1 16495001 16512000 0 0 Deletion 16999 LOC_Os01g29610 expressed protein FN3094-S Chr1 16593001 16696000 0 0 Deletion 102999 LOC_Os01g29620 retrotransposon protein, putative, Ty1-copia subclass FN3094-S Chr1 16593001 16696000 0 0 Deletion 102999 LOC_Os01g29640 expressed protein FN3094-S Chr1 16593001 16696000 0 0 Deletion 102999 LOC_Os01g29650 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr1 16593001 16696000 0 0 Deletion 102999 LOC_Os01g29660 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr1 16593001 16696000 0 0 Deletion 102999 LOC_Os01g29670 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr1 16593001 16696000 0 0 Deletion 102999 LOC_Os01g29680 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr1 16593001 16696000 0 0 Deletion 102999 LOC_Os01g29690 expressed protein FN3094-S Chr1 16593001 16696000 0 0 Deletion 102999 LOC_Os01g29700 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr1 16593001 16696000 0 0 Deletion 102999 LOC_Os01g29710 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr1 16593001 16696000 0 0 Deletion 102999 LOC_Os01g29720 expressed protein FN3094-S Chr1 16593001 16696000 0 0 Deletion 102999 LOC_Os01g29730 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr1 16593001 16696000 0 0 Deletion 102999 LOC_Os01g29740 expressed protein FN3094-S Chr1 16593001 16696000 0 0 Deletion 102999 LOC_Os01g29750 transposon protein, putative, unclassified, expressed FN3094-S Chr1 16593001 16696000 0 0 Deletion 102999 LOC_Os01g29760 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr1 16593001 16696000 0 0 Deletion 102999 LOC_Os01g29780 expressed protein FN3094-S Chr1 16593001 16696000 0 0 Deletion 102999 LOC_Os01g29790 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr1 16593001 16696000 0 0 Deletion 102999 LOC_Os01g29804 expressed protein FN3094-S Chr1 17203001 17217000 0 0 Deletion 13999 LOC_Os01g31470 mov34/MPN/PAD-1 family protein, expressed FN3094-S Chr1 17359001 17417000 0 0 Deletion 57999 LOC_Os01g31714 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr1 17359001 17417000 0 0 Deletion 57999 LOC_Os01g31730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr1 17359001 17417000 0 0 Deletion 57999 LOC_Os01g31740 retrotransposon protein, putative, unclassified FN3094-S Chr1 17359001 17417000 0 0 Deletion 57999 LOC_Os01g31750 transposon protein, putative, unclassified, expressed FN3094-S Chr1 17359001 17417000 0 0 Deletion 57999 LOC_Os01g31760 acyl-ACP thioesterase, putative, expressed FN3094-S Chr1 17359001 17417000 0 0 Deletion 57999 LOC_Os01g31770 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed FN3094-S Chr1 17359001 17417000 0 0 Deletion 57999 LOC_Os01g31780 expressed protein FN3094-S Chr1 18366001 18374000 0 0 Deletion 7999 LOC_Os01g33360 DnaK family protein, putative, expressed FN3094-S Chr1 18366001 18374000 0 0 Deletion 7999 LOC_Os01g34330 BAH domain containing protein, expressed FN3094-S Chr1 18944001 18974000 0 0 Deletion 29999 LOC_Os01g34360 transposon protein, putative, CACTA, En/Spm sub-class FN3094-S Chr1 18944001 18974000 0 0 Deletion 29999 LOC_Os01g34374 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr1 18944001 18974000 0 0 Deletion 29999 LOC_Os01g34390 prenyltransferase, putative, expressed FN3094-S Chr1 18944001 18974000 0 0 Deletion 29999 LOC_Os01g34400 transposon protein, putative, Pong sub-class, expressed FN3094-S Chr1 19140001 19164000 0 0 Deletion 23999 LOC_Os01g34710 transposon protein, putative, unclassified, expressed FN3094-S Chr1 19140001 19164000 0 0 Deletion 23999 LOC_Os01g34720 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr1 19140001 19164000 0 0 Deletion 23999 LOC_Os01g34730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr1 19628001 19646000 0 0 Deletion 17999 LOC_Os01g35480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr1 19628001 19646000 0 0 Deletion 17999 LOC_Os01g35490 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr1 19628001 19646000 0 0 Deletion 17999 LOC_Os01g35504 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr1 19628001 19646000 0 0 Deletion 17999 LOC_Os01g35600 retrotransposon protein, putative, unclassified FN3094-S Chr1 19699001 19729000 0 0 Deletion 29999 LOC_Os01g35600 retrotransposon protein, putative, unclassified FN3094-S Chr1 19699001 19729000 0 0 Deletion 29999 LOC_Os01g35610 expressed protein FN3094-S Chr1 19699001 19729000 0 0 Deletion 29999 LOC_Os01g35620 retrotransposon protein, putative, unclassified FN3094-S Chr1 19699001 19729000 0 0 Deletion 29999 LOC_Os01g35630 retrotransposon, putative, centromere-specific, expressed FN3094-S Chr1 19821323 19821333 0 0 Deletion 10 upstream_gene_variant HET FN3094-S Chr1 20196001 20233000 0 0 Deletion 36999 LOC_Os01g36400 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr1 20196001 20233000 0 0 Deletion 36999 LOC_Os01g36410 expressed protein FN3094-S Chr1 20196001 20233000 0 0 Deletion 36999 LOC_Os01g36420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr1 20196001 20233000 0 0 Deletion 36999 LOC_Os01g36430 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr1 20196001 20233000 0 0 Deletion 36999 LOC_Os01g36440 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr1 20196001 20233000 0 0 Deletion 36999 LOC_Os01g36766 transposon protein, putative, CACTA, En/Spm sub-class FN3094-S Chr1 20418001 20434000 0 0 Deletion 15999 LOC_Os01g36766 transposon protein, putative, CACTA, En/Spm sub-class FN3094-S Chr1 20418001 20434000 0 0 Deletion 15999 LOC_Os01g36772 transposon protein, putative, CACTA, En/Spm sub-class FN3094-S Chr1 20418001 20434000 0 0 Deletion 15999 LOC_Os01g36780 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr1 20493001 20578000 0 0 Deletion 84999 LOC_Os01g36840 ATP-binding region, ATPase-like domain containing protein, expressed FN3094-S Chr1 20493001 20578000 0 0 Deletion 84999 LOC_Os01g36850 transposon protein, putative, Pong sub-class, expressed FN3094-S Chr1 20493001 20578000 0 0 Deletion 84999 LOC_Os01g36860 DEAD-box ATP-dependent RNA helicase 40, putative, expressed FN3094-S Chr1 20493001 20578000 0 0 Deletion 84999 LOC_Os01g36870 phox domain-containing protein, putative, expressed FN3094-S Chr1 20493001 20578000 0 0 Deletion 84999 LOC_Os01g36880 hypothetical protein FN3094-S Chr1 20493001 20578000 0 0 Deletion 84999 LOC_Os01g36890 DEAD-box ATP-dependent RNA helicase, putative, expressed FN3094-S Chr1 20493001 20578000 0 0 Deletion 84999 LOC_Os01g36900 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr1 20493001 20578000 0 0 Deletion 84999 LOC_Os01g36910 transposon protein, putative, unclassified, expressed FN3094-S Chr1 20493001 20578000 0 0 Deletion 84999 LOC_Os01g36920 DEAD-box ATP-dependent RNA helicase, putative, expressed FN3094-S Chr1 21187001 21206000 0 0 Deletion 18999 LOC_Os01g37860 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr1 21187001 21206000 0 0 Deletion 18999 LOC_Os01g37870 PPR repeat domain containing protein, putative, expressed FN3094-S Chr1 21187001 21206000 0 0 Deletion 18999 LOC_Os01g38330 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr1 22138001 22173000 0 0 Deletion 34999 LOC_Os01g39330 helix-loop-helix DNA-binding domain containing protein, expressed FN3094-S Chr1 22138001 22173000 0 0 Deletion 34999 LOC_Os01g39340 expressed protein FN3094-S Chr1 22138001 22173000 0 0 Deletion 34999 LOC_Os01g39350 protein kinase domain containing protein, expressed FN3094-S Chr1 22138001 22173000 0 0 Deletion 34999 LOC_Os01g39360 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr1 22138001 22173000 0 0 Deletion 34999 LOC_Os01g39370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr1 22138001 22173000 0 0 Deletion 34999 LOC_Os01g39380 SCD1, putative, expressed FN3094-S Chr1 23880044 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g42110 nodulin MtN3 family protein, putative, expressed FN3094-S Chr1 23880046 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g42110 nodulin MtN3 family protein, putative, expressed FN3094-S Chr1 28535001 28558000 0 0 Deletion 22999 LOC_Os01g49640 LTPL149 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3094-S Chr1 28535001 28558000 0 0 Deletion 22999 LOC_Os01g49650 LTPL150 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3094-S Chr1 28535001 28558000 0 0 Deletion 22999 LOC_Os01g49660 reticulon domain containing protein, putative, expressed FN3094-S Chr1 28535001 28558000 0 0 Deletion 22999 LOC_Os01g49670 cytidylyltransferase domain containing protein, expressed FN3094-S Chr1 28535001 28558000 0 0 Deletion 22999 LOC_Os01g49680 DNA repair helicase XPB2, putative, expressed FN3094-S Chr1 28535001 28558000 0 0 Deletion 22999 LOC_Os01g49690 Ser/Thr protein phosphatase family protein, putative, expressed FN3094-S Chr1 28535001 28558000 0 0 Deletion 22999 LOC_Os01g49950 transposon protein, putative, unclassified, expressed FN3094-S Chr1 28704001 28721000 0 0 Deletion 16999 LOC_Os01g49960 expressed protein FN3094-S Chr1 28704001 28721000 0 0 Deletion 16999 LOC_Os01g49970 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr1 28704001 28721000 0 0 Deletion 16999 LOC_Os01g49980 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr1 28704001 28721000 0 0 Deletion 16999 LOC_Os01g51154 single myb histone, putative, expressed FN3094-S Chr1 30028001 30048000 0 0 Deletion 19999 LOC_Os01g52240 chlorophyll A-B binding protein, putative, expressed FN3094-S Chr1 30028001 30048000 0 0 Deletion 19999 LOC_Os01g52250 starch synthase, putative, expressed FN3094-S Chr1 30028001 30048000 0 0 Deletion 19999 LOC_Os01g52260 serine acetyltransferase protein, putative, expressed FN3094-S Chr1 30028001 30048000 0 0 Deletion 19999 LOC_Os01g52320 NB-ARC domain containing protein, expressed FN3094-S Chr1 30988001 31015000 0 0 Deletion 26999 LOC_Os01g53910 dehydrogenase, putative, expressed FN3094-S Chr1 30988001 31015000 0 0 Deletion 26999 LOC_Os01g53920 receptor-like protein kinase 5 precursor, putative, expressed FN3094-S Chr1 30988001 31015000 0 0 Deletion 26999 LOC_Os01g53930 hexokinase, putative, expressed FN3094-S Chr1 30988001 31015000 0 0 Deletion 26999 LOC_Os01g54220 transposon protein, putative, unclassified, expressed FN3094-S Chr1 32060001 32092000 0 0 Deletion 31999 LOC_Os01g55660 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr1 32060001 32092000 0 0 Deletion 31999 LOC_Os01g55670 expressed protein FN3094-S Chr1 32060001 32092000 0 0 Deletion 31999 LOC_Os01g55690 glutelin, putative, expressed FN3094-S Chr1 32060001 32092000 0 0 Deletion 31999 LOC_Os01g55700 NLI interacting factor-like phosphatase, putative, expressed FN3094-S Chr1 32060001 32092000 0 0 Deletion 31999 LOC_Os01g55710 DNA-binding protein, putative, expressed FN3094-S Chr1 32060001 32092000 0 0 Deletion 31999 LOC_Os01g55720 expressed protein FN3094-S Chr1 32060001 32092000 0 0 Deletion 31999 LOC_Os01g55730 AGAP003732-PA, putative, expressed FN3094-S Chr1 32218001 32253000 0 0 Deletion 34999 LOC_Os01g55940 OsGH3.2 - Probable indole-3-acetic acid-amido synthetase, expressed FN3094-S Chr1 32218001 32253000 0 0 Deletion 34999 LOC_Os01g55950 acetamidase, putative, expressed FN3094-S Chr1 32218001 32253000 0 0 Deletion 34999 LOC_Os01g55960 pentatricopeptide, putative, expressed FN3094-S Chr1 32218001 32253000 0 0 Deletion 34999 LOC_Os01g55974 deoxycytidylate deaminase, putative, expressed FN3094-S Chr1 32218001 32253000 0 0 Deletion 34999 LOC_Os01g55990 expressed protein FN3094-S Chr1 32218001 32253000 0 0 Deletion 34999 LOC_Os01g56000 RNA recognition motif containing protein, expressed FN3094-S Chr1 32218001 32253000 0 0 Deletion 34999 LOC_Os01g56010 serpin domain containing protein, putative, expressed FN3094-S Chr1 32218001 32253000 0 0 Deletion 34999 LOC_Os01g56020 expressed protein FN3094-S Chr1 32462001 32511000 0 0 Deletion 48999 LOC_Os01g56330 TKL_IRAK_CrRLK1L-1.5 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed FN3094-S Chr1 32462001 32511000 0 0 Deletion 48999 LOC_Os01g56340 transposon protein, putative, unclassified, expressed FN3094-S Chr1 32462001 32511000 0 0 Deletion 48999 LOC_Os01g56350 PTAC12, putative, expressed FN3094-S Chr1 32462001 32511000 0 0 Deletion 48999 LOC_Os01g56360 wax synthase, putative, expressed FN3094-S Chr1 32462001 32511000 0 0 Deletion 48999 LOC_Os01g56370 wax synthase, putative, expressed FN3094-S Chr1 32462001 32511000 0 0 Deletion 48999 LOC_Os01g56380 decarboxylase, putative, expressed FN3094-S Chr1 32462001 32511000 0 0 Deletion 48999 LOC_Os01g56390 OsFBX26 - F-box domain containing protein, expressed FN3094-S Chr1 32581001 32601000 0 0 Deletion 19999 LOC_Os01g56520 double-stranded RNA binding motif containing protein, expressed FN3094-S Chr1 32581001 32601000 0 0 Deletion 19999 LOC_Os01g56530 DUF260 domain containing protein, putative, expressed FN3094-S Chr1 32581001 32601000 0 0 Deletion 19999 LOC_Os01g56540 histone-lysine N-methyltransferase SUVR3, putative, expressed FN3094-S Chr1 32581001 32601000 0 0 Deletion 19999 LOC_Os01g56550 transcription initiation factor IIF beta subunit, putative, expressed FN3094-S Chr1 32581001 32601000 0 0 Deletion 19999 LOC_Os01g56590 guanine nucleotide exchange family protein, putative, expressed FN3094-S Chr1 32849001 32878000 0 0 Deletion 28999 LOC_Os01g56890 expressed protein FN3094-S Chr1 32849001 32878000 0 0 Deletion 28999 LOC_Os01g56900 expressed protein FN3094-S Chr1 32849001 32878000 0 0 Deletion 28999 LOC_Os01g56910 expressed protein FN3094-S Chr1 33286001 33313000 0 0 Deletion 26999 LOC_Os01g57590 expressed protein FN3094-S Chr1 33286001 33313000 0 0 Deletion 26999 LOC_Os01g57599 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr1 33286001 33313000 0 0 Deletion 26999 LOC_Os01g57610 OsGH3.1 - Probable indole-3-acetic acid-amido synthetase, expressed FN3094-S Chr1 33720741 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3094-S Chr1 345001 369000 0 0 Deletion 23999 LOC_Os01g02884 ATP-dependent RNA helicase DHX36, putative, expressed FN3094-S Chr1 34970001 34988000 0 0 Deletion 17999 LOC_Os01g60480 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr1 34970001 34988000 0 0 Deletion 17999 LOC_Os01g60490 WRKY22, expressed FN3094-S Chr1 34970001 34988000 0 0 Deletion 17999 LOC_Os01g60500 hypothetical protein FN3094-S Chr1 35622001 35644000 0 0 Deletion 21999 LOC_Os01g61610 flavonol synthase/flavanone 3-hydroxylase, putative, expressed FN3094-S Chr1 35837030 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3094-S Chr1 36751001 36779000 0 0 Deletion 27999 LOC_Os01g63444 expressed protein FN3094-S Chr1 36751001 36779000 0 0 Deletion 27999 LOC_Os01g63460 MYB family transcription factor, putative, expressed FN3094-S Chr1 36751001 36779000 0 0 Deletion 27999 LOC_Os01g63470 C2 domain containing protein, expressed FN3094-S Chr1 37100001 37140000 0 0 Deletion 39999 LOC_Os01g63940 Transcription initiation factor TFIID subunit A containing protein, expressed FN3094-S Chr1 37100001 37140000 0 0 Deletion 39999 LOC_Os01g63950 expressed protein FN3094-S Chr1 37100001 37140000 0 0 Deletion 39999 LOC_Os01g63960 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr1 37100001 37140000 0 0 Deletion 39999 LOC_Os01g63970 sialyltransferase family domain containing protein, expressed FN3094-S Chr1 3755001 3775000 0 0 Deletion 19999 LOC_Os01g07840 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr1 3755001 3775000 0 0 Deletion 19999 LOC_Os01g09370 ankyrin repeat domain-containing protein 28, putative, expressed FN3094-S Chr1 38705001 38747000 0 0 Deletion 41999 LOC_Os01g66650 expressed protein FN3094-S Chr1 38705001 38747000 0 0 Deletion 41999 LOC_Os01g66660 expressed protein FN3094-S Chr1 38705001 38747000 0 0 Deletion 41999 LOC_Os01g66670 expressed protein FN3094-S Chr1 38705001 38747000 0 0 Deletion 41999 LOC_Os01g66680 S-domain receptor-like protein kinase, putative, expressed FN3094-S Chr1 38705001 38747000 0 0 Deletion 41999 LOC_Os01g66690 ZIP4/SPO22, putative, expressed FN3094-S Chr1 38705001 38747000 0 0 Deletion 41999 LOC_Os01g66700 beta-hexosaminidase precursor, putative, expressed FN3094-S Chr1 38705001 38747000 0 0 Deletion 41999 LOC_Os01g67740 chromosome segregation protein, putative, expressed FN3094-S Chr1 39306982 39306983 0 0 Deletion 1 upstream_gene_variant HET FN3094-S Chr1 39372001 39391000 0 0 Deletion 18999 LOC_Os01g67750 expressed protein FN3094-S Chr1 39372001 39391000 0 0 Deletion 18999 LOC_Os01g67760 expressed protein FN3094-S Chr1 39372001 39391000 0 0 Deletion 18999 LOC_Os01g67770 two-component response regulator, putative, expressed FN3094-S Chr1 39372001 39391000 0 0 Deletion 18999 LOC_Os01g69850 OsMADS65 - MADS-box family gene with MIKC* type-box, expressed FN3094-S Chr1 41152001 41179000 0 0 Deletion 26999 LOC_Os01g71106 NBS-LRR disease resistance protein, putative, expressed FN3094-S Chr1 41152001 41179000 0 0 Deletion 26999 LOC_Os01g71114 disease resistance protein RGA4, putative, expressed FN3094-S Chr1 41152001 41179000 0 0 Deletion 26999 LOC_Os01g71130 xylanase inhibitor 725OS, putative, expressed FN3094-S Chr1 41152001 41179000 0 0 Deletion 26999 LOC_Os01g71140 xylanase inhibitor, putative, expressed FN3094-S Chr1 41152001 41179000 0 0 Deletion 26999 LOC_Os01g71150 expressed protein FN3094-S Chr1 41152001 41179000 0 0 Deletion 26999 LOC_Os01g71160 xylanase inhibitor, putative, expressed FN3094-S Chr1 41152001 41179000 0 0 Deletion 26999 LOC_Os01g71270 eukaryotic peptide chain release factor subunit 1-1, putative, expressed FN3094-S Chr1 41240001 41296000 0 0 Deletion 55999 LOC_Os01g71280 glycerol-3-phosphate dehydrogenase, putative, expressed FN3094-S Chr1 41240001 41296000 0 0 Deletion 55999 LOC_Os01g71300 S-formylglutathione hydrolase, putative, expressed FN3094-S Chr1 41240001 41296000 0 0 Deletion 55999 LOC_Os01g72380 expressed protein FN3094-S Chr1 41664447 41664455 0 0 Deletion 8 upstream_gene_variant HET FN3094-S Chr1 42210001 42226000 0 0 Deletion 15999 LOC_Os01g72780 expressed protein FN3094-S Chr1 42210001 42226000 0 0 Deletion 15999 LOC_Os01g72860 MAC/Perforin domain containing protein, putative, expressed FN3094-S Chr1 42259050 42259063 0 0 Deletion 13 INTERGENIC HET FN3094-S Chr1 42264001 42283000 0 0 Deletion 18999 LOC_Os01g72870 BAS1, putative, expressed FN3094-S Chr1 42264001 42283000 0 0 Deletion 18999 LOC_Os01g72880 DNA mismatch repair protein Mlh1, putative, expressed FN3094-S Chr1 42264001 42283000 0 0 Deletion 18999 LOC_Os01g72890 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr1 42264001 42283000 0 0 Deletion 18999 LOC_Os01g72900 abscisic stress-ripening, putative, expressed FN3094-S Chr1 42264001 42283000 0 0 Deletion 18999 LOC_Os01g72910 abscisic stress-ripening, putative, expressed FN3094-S Chr1 7051001 7067000 0 0 Deletion 15999 LOC_Os01g12760 cytochrome P450, putative, expressed FN3094-S Chr1 7051001 7067000 0 0 Deletion 15999 LOC_Os01g12860 MYB family transcription factor, putative, expressed FN3094-S Chr1 7128001 7145000 0 0 Deletion 16999 LOC_Os01g12880 VHS and GAT domain containing protein, expressed FN3094-S Chr1 7128001 7145000 0 0 Deletion 16999 LOC_Os01g14580 dehydrogenase, putative, expressed FN3094-S Chr10 1010001 1049000 0 0 Deletion 38999 LOC_Os10g02640 expressed protein FN3094-S Chr10 1010001 1049000 0 0 Deletion 38999 LOC_Os10g02644 hypothetical protein FN3094-S Chr10 1010001 1049000 0 0 Deletion 38999 LOC_Os10g02650 PPR repeat containing protein, expressed FN3094-S Chr10 1010001 1049000 0 0 Deletion 38999 LOC_Os10g02660 transposon protein, putative, unclassified, expressed FN3094-S Chr10 1010001 1049000 0 0 Deletion 38999 LOC_Os10g02670 expressed protein FN3094-S Chr10 10361574 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3094-S Chr10 10631051 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3094-S Chr10 11123001 11188000 0 0 Deletion 64999 LOC_Os10g21700 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr10 11123001 11188000 0 0 Deletion 64999 LOC_Os10g21720 expressed protein FN3094-S Chr10 11123001 11188000 0 0 Deletion 64999 LOC_Os10g21730 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr10 11123001 11188000 0 0 Deletion 64999 LOC_Os10g21740 expressed protein FN3094-S Chr10 11123001 11188000 0 0 Deletion 64999 LOC_Os10g21760 retrotransposon protein, putative, unclassified FN3094-S Chr10 11123001 11188000 0 0 Deletion 64999 LOC_Os10g21770 expressed protein FN3094-S Chr10 11123001 11188000 0 0 Deletion 64999 LOC_Os10g21780 hypothetical protein FN3094-S Chr10 11123001 11188000 0 0 Deletion 64999 LOC_Os10g21784 expressed protein FN3094-S Chr10 11123001 11188000 0 0 Deletion 64999 LOC_Os10g21790 dehydration stress-induced protein, putative, expressed FN3094-S Chr10 11123001 11188000 0 0 Deletion 64999 LOC_Os10g21800 leucine-rich repeat family protein, putative, expressed FN3094-S Chr10 11282001 11301000 0 0 Deletion 18999 LOC_Os10g21920 PPR repeat containing protein, expressed FN3094-S Chr10 11282001 11301000 0 0 Deletion 18999 LOC_Os10g21930 OsFBK21 - F-box domain and kelch repeat containing protein, expressed FN3094-S Chr10 11680001 11704000 0 0 Deletion 23999 LOC_Os10g22550 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr10 11680001 11704000 0 0 Deletion 23999 LOC_Os10g22560 peptide transporter PTR2, putative, expressed FN3094-S Chr10 11680001 11704000 0 0 Deletion 23999 LOC_Os10g22570 cellulase, putative, expressed FN3094-S Chr10 11680001 11704000 0 0 Deletion 23999 LOC_Os10g22590 POEI24 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN3094-S Chr10 11853001 11872000 0 0 Deletion 18999 LOC_Os10g22820 expressed protein FN3094-S Chr10 11853001 11872000 0 0 Deletion 18999 LOC_Os10g22830 expressed protein FN3094-S Chr10 11853001 11872000 0 0 Deletion 18999 LOC_Os10g22840 retrotransposon protein, putative, unclassified FN3094-S Chr10 11853001 11872000 0 0 Deletion 18999 LOC_Os10g23100 ras-related protein, putative, expressed FN3094-S Chr10 12010476 12010476 0 0 Insertion 2 INTERGENIC HET FN3094-S Chr10 12052001 12067000 0 0 Deletion 14999 LOC_Os10g23110 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr10 12052001 12067000 0 0 Deletion 14999 LOC_Os10g23250 expressed protein FN3094-S Chr10 12690001 12712000 0 0 Deletion 21999 LOC_Os10g24700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr10 12690001 12712000 0 0 Deletion 21999 LOC_Os10g24710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr10 12690001 12712000 0 0 Deletion 21999 LOC_Os10g24740 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr10 12727001 12755000 0 0 Deletion 27999 LOC_Os10g24750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr10 12727001 12755000 0 0 Deletion 27999 LOC_Os10g24760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr10 12727001 12755000 0 0 Deletion 27999 LOC_Os10g24770 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr10 12727001 12755000 0 0 Deletion 27999 LOC_Os10g24780 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr10 12727001 12755000 0 0 Deletion 27999 LOC_Os10g24790 transposon protein, putative, unclassified, expressed FN3094-S Chr10 12727001 12755000 0 0 Deletion 27999 LOC_Os10g24800 hypothetical protein FN3094-S Chr10 12727001 12755000 0 0 Deletion 27999 LOC_Os10g24940 expressed protein FN3094-S Chr10 12833001 12852000 0 0 Deletion 18999 LOC_Os10g24954 ulp1 protease family, C-terminal catalytic domain containing protein, expressed FN3094-S Chr10 12833001 12852000 0 0 Deletion 18999 LOC_Os10g25080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr10 13122922 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3094-S Chr10 13259935 13480297 0 0 Inversion 220362 FN3094-S Chr10 13958990 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3094-S Chr10 15504001 15517000 0 0 Deletion 12999 LOC_Os10g29840 MBTB59 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain FN3094-S Chr10 15504001 15517000 0 0 Deletion 12999 LOC_Os10g29850 MBTB60 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3094-S Chr10 15504001 15517000 0 0 Deletion 12999 LOC_Os10g30410 cytochrome P450 71D7, putative, expressed FN3094-S Chr10 16505001 16525000 0 0 Deletion 19999 LOC_Os10g31520 ribosomal RNA assembly protein mis3, putative, expressed FN3094-S Chr10 16505001 16525000 0 0 Deletion 19999 LOC_Os10g31530 glycine-rich cell wall protein, putative, expressed FN3094-S Chr10 16505001 16525000 0 0 Deletion 19999 LOC_Os10g31540 glycine-rich cell wall structural protein 2 precursor, putative, expressed FN3094-S Chr10 16505001 16525000 0 0 Deletion 19999 LOC_Os10g31550 hypothetical protein FN3094-S Chr10 16505001 16525000 0 0 Deletion 19999 LOC_Os10g31600 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr10 17430001 17450000 0 0 Deletion 19999 LOC_Os10g33230 RNA recognition motif containing protein, putative, expressed FN3094-S Chr10 17430001 17450000 0 0 Deletion 19999 LOC_Os10g33240 expressed protein FN3094-S Chr10 17430001 17450000 0 0 Deletion 19999 LOC_Os10g33250 WAX2, putative, expressed FN3094-S Chr10 17430001 17450000 0 0 Deletion 19999 LOC_Os10g33740 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr10 18456001 18500000 0 0 Deletion 43999 LOC_Os10g34630 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr10 18456001 18500000 0 0 Deletion 43999 LOC_Os10g34640 retrotransposon protein, putative, unclassified FN3094-S Chr10 18456001 18500000 0 0 Deletion 43999 LOC_Os10g34650 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr10 18456001 18500000 0 0 Deletion 43999 LOC_Os10g34660 expressed protein FN3094-S Chr10 18456001 18500000 0 0 Deletion 43999 LOC_Os10g34670 prefoldin, putative, expressed FN3094-S Chr10 18456001 18500000 0 0 Deletion 43999 LOC_Os10g34680 vacuolar protein sorting-associated protein 52, putative, expressed FN3094-S Chr10 18456001 18500000 0 0 Deletion 43999 LOC_Os10g34694 hypothetical protein FN3094-S Chr10 18713820 18713821 0 0 Deletion 1 downstream_gene_variant HET FN3094-S Chr10 18869929 Chr7 4132495 0 Translocation 0 LOC_Os10g35294 fiber protein Fb34, putative, expressed FN3094-S Chr10 18870304 19349060 0 0 Inversion 478756 LOC_Os10g35294 fiber protein Fb34, putative, expressed FN3094-S Chr10 19281237 Chr7 4132523 0 Translocation 0 LOC_Os10g36060 protein transport protein-related, putative, expressed FN3094-S Chr10 2237001 2268000 0 0 Deletion 30999 LOC_Os10g04690 expressed protein FN3094-S Chr10 2237001 2268000 0 0 Deletion 30999 LOC_Os10g04700 OsFBX361 - F-box domain containing protein, expressed FN3094-S Chr10 2237001 2268000 0 0 Deletion 30999 LOC_Os10g04710 expressed protein FN3094-S Chr10 2237001 2268000 0 0 Deletion 30999 LOC_Os10g04720 TKL_IRAK_DUF26-la.5 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3094-S Chr10 2237001 2268000 0 0 Deletion 30999 LOC_Os10g04730 TKL_IRAK_DUF26-la.6 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3094-S Chr10 2237001 2268000 0 0 Deletion 30999 LOC_Os10g04740 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr10 2237001 2268000 0 0 Deletion 30999 LOC_Os10g04780 OsFBX363 - F-box domain containing protein, expressed FN3094-S Chr10 3059001 3094000 0 0 Deletion 34999 LOC_Os10g06030 OsWAK103 - OsWAK receptor-like protein kinase, expressed FN3094-S Chr10 3059001 3094000 0 0 Deletion 34999 LOC_Os10g06050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr10 3059001 3094000 0 0 Deletion 34999 LOC_Os10g06070 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr10 3059001 3094000 0 0 Deletion 34999 LOC_Os10g06080 hypothetical protein FN3094-S Chr10 3059001 3094000 0 0 Deletion 34999 LOC_Os10g06090 OsWAK104 - OsWAK receptor-like protein kinase, expressed FN3094-S Chr10 348650 348650 0 0 Insertion 2 INTERGENIC HET FN3094-S Chr10 3819001 3837000 0 0 Deletion 17999 LOC_Os10g07270 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed FN3094-S Chr10 4676001 4735000 0 0 Deletion 58999 LOC_Os10g08620 chalcone and stilbene synthases, putative, expressed FN3094-S Chr10 4676001 4735000 0 0 Deletion 58999 LOC_Os10g08630 expressed protein FN3094-S Chr10 4676001 4735000 0 0 Deletion 58999 LOC_Os10g08640 expressed protein FN3094-S Chr10 4676001 4735000 0 0 Deletion 58999 LOC_Os10g08650 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr10 4676001 4735000 0 0 Deletion 58999 LOC_Os10g08660 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr10 4676001 4735000 0 0 Deletion 58999 LOC_Os10g08670 chalcone synthase, putative, expressed FN3094-S Chr10 4676001 4735000 0 0 Deletion 58999 LOC_Os10g08680 conserved hypothetical protein FN3094-S Chr10 4676001 4735000 0 0 Deletion 58999 LOC_Os10g08690 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr10 4676001 4735000 0 0 Deletion 58999 LOC_Os10g08696 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr10 4676001 4735000 0 0 Deletion 58999 LOC_Os10g08702 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr10 4676001 4735000 0 0 Deletion 58999 LOC_Os10g08710 chalcone synthase, putative, expressed FN3094-S Chr10 4676001 4735000 0 0 Deletion 58999 LOC_Os10g08720 hypothetical protein FN3094-S Chr10 534001 552000 0 0 Deletion 17999 LOC_Os10g01840 hypothetical protein FN3094-S Chr10 534001 552000 0 0 Deletion 17999 LOC_Os10g01844 expressed protein FN3094-S Chr10 534001 552000 0 0 Deletion 17999 LOC_Os10g01850 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr10 534001 552000 0 0 Deletion 17999 LOC_Os10g01920 transferase family protein, putative, expressed FN3094-S Chr10 5444001 5464000 0 0 Deletion 19999 LOC_Os10g10040 cytochrome P450, putative, expressed FN3094-S Chr10 5444001 5464000 0 0 Deletion 19999 LOC_Os10g10130 OsWAK112d - OsWAK receptor-like protein kinase, expressed FN3094-S Chr10 587001 641000 0 0 Deletion 53999 LOC_Os10g01930 transferase family protein, putative, expressed FN3094-S Chr10 587001 641000 0 0 Deletion 53999 LOC_Os10g01940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr10 587001 641000 0 0 Deletion 53999 LOC_Os10g01950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr10 587001 641000 0 0 Deletion 53999 LOC_Os10g01960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr10 587001 641000 0 0 Deletion 53999 LOC_Os10g01970 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr10 587001 641000 0 0 Deletion 53999 LOC_Os10g01984 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr10 587001 641000 0 0 Deletion 53999 LOC_Os10g02000 transferase family protein, putative, expressed FN3094-S Chr10 587001 641000 0 0 Deletion 53999 LOC_Os10g02010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr10 6175001 6224000 0 0 Deletion 48999 LOC_Os10g11160 retrotransposon protein, putative, unclassified FN3094-S Chr10 6175001 6224000 0 0 Deletion 48999 LOC_Os10g11170 expressed protein FN3094-S Chr10 6175001 6224000 0 0 Deletion 48999 LOC_Os10g11180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr10 6175001 6224000 0 0 Deletion 48999 LOC_Os10g11190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr10 6175001 6224000 0 0 Deletion 48999 LOC_Os10g11200 aminotransferase, classes I and II, domain containing protein, expressed FN3094-S Chr10 6175001 6224000 0 0 Deletion 48999 LOC_Os10g11210 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr10 6175001 6224000 0 0 Deletion 48999 LOC_Os10g11220 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr10 703001 715000 0 0 Deletion 11999 LOC_Os10g02130 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr10 7228481 7228482 0 0 Deletion 1 upstream_gene_variant HET FN3094-S Chr10 755001 772000 0 0 Deletion 16999 LOC_Os10g02210 peptide transporter PTR2, putative, expressed FN3094-S Chr10 755001 772000 0 0 Deletion 16999 LOC_Os10g02220 peptide transporter PTR2, putative, expressed FN3094-S Chr10 8410001 8425000 0 0 Deletion 14999 LOC_Os10g16890 expressed protein FN3094-S Chr10 8410001 8425000 0 0 Deletion 14999 LOC_Os10g17900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr10 8748131 8748142 0 0 Deletion 11 FRAME_SHIFT HET LOC_Os10g17360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr10 9049001 9131000 0 0 Deletion 81999 LOC_Os10g17900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr10 9049001 9131000 0 0 Deletion 81999 LOC_Os10g17910 OsWAK114 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed FN3094-S Chr10 9049001 9131000 0 0 Deletion 81999 LOC_Os10g17920 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr10 9049001 9131000 0 0 Deletion 81999 LOC_Os10g17930 OsFBX381 - F-box domain containing protein, expressed FN3094-S Chr10 9049001 9131000 0 0 Deletion 81999 LOC_Os10g17940 OsFBX382 - F-box domain containing protein, expressed FN3094-S Chr10 9049001 9131000 0 0 Deletion 81999 LOC_Os10g17950 TKL_IRAK_DUF26-lc.5 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3094-S Chr10 9049001 9131000 0 0 Deletion 81999 LOC_Os10g17960 TKL_IRAK_DUF26-lc.26 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3094-S Chr10 9049001 9131000 0 0 Deletion 81999 LOC_Os10g17970 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr10 9049001 9131000 0 0 Deletion 81999 LOC_Os10g17980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr10 9049001 9131000 0 0 Deletion 81999 LOC_Os10g17990 phosphatidate cytidylyltransferase, putative, expressed FN3094-S Chr11 1022001 1049000 0 0 Deletion 26999 LOC_Os11g02950 auxin efflux carrier component, putative, expressed FN3094-S Chr11 1022001 1049000 0 0 Deletion 26999 LOC_Os11g02964 FAR1 family protein, expressed FN3094-S Chr11 1022001 1049000 0 0 Deletion 26999 LOC_Os11g02980 expressed protein FN3094-S Chr11 1022001 1049000 0 0 Deletion 26999 LOC_Os11g02990 conserved hypothetical protein FN3094-S Chr11 1022001 1049000 0 0 Deletion 26999 LOC_Os11g03000 retrotransposon protein, putative, unclassified FN3094-S Chr11 1022001 1049000 0 0 Deletion 26999 LOC_Os11g03010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 10243001 10373000 0 0 Deletion 129999 LOC_Os11g18220 hypothetical protein FN3094-S Chr11 10243001 10373000 0 0 Deletion 129999 LOC_Os11g18230 expressed protein FN3094-S Chr11 10243001 10373000 0 0 Deletion 129999 LOC_Os11g18240 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 10243001 10373000 0 0 Deletion 129999 LOC_Os11g18250 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr11 10243001 10373000 0 0 Deletion 129999 LOC_Os11g18260 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr11 10243001 10373000 0 0 Deletion 129999 LOC_Os11g18270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 10243001 10373000 0 0 Deletion 129999 LOC_Os11g18280 retrotransposon protein, putative, unclassified FN3094-S Chr11 10243001 10373000 0 0 Deletion 129999 LOC_Os11g18290 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 10243001 10373000 0 0 Deletion 129999 LOC_Os11g18300 expressed protein FN3094-S Chr11 10243001 10373000 0 0 Deletion 129999 LOC_Os11g18310 cycloartenol synthase, putative FN3094-S Chr11 10243001 10373000 0 0 Deletion 129999 LOC_Os11g18320 expressed protein FN3094-S Chr11 10243001 10373000 0 0 Deletion 129999 LOC_Os11g18340 cycloartenol synthase, putative, expressed FN3094-S Chr11 10243001 10373000 0 0 Deletion 129999 LOC_Os11g18366 cycloartenol synthase, putative, expressed FN3094-S Chr11 10534001 10609000 0 0 Deletion 74999 LOC_Os11g18670 ubiquitin family protein, putative, expressed FN3094-S Chr11 10534001 10609000 0 0 Deletion 74999 LOC_Os11g18680 hypothetical protein FN3094-S Chr11 10534001 10609000 0 0 Deletion 74999 LOC_Os11g18690 glycosyl hydrolase family 3 protein, putative, expressed FN3094-S Chr11 10534001 10609000 0 0 Deletion 74999 LOC_Os11g18700 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 10534001 10609000 0 0 Deletion 74999 LOC_Os11g18710 expressed protein FN3094-S Chr11 10534001 10609000 0 0 Deletion 74999 LOC_Os11g18720 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 10664001 10688000 0 0 Deletion 23999 LOC_Os11g18790 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 10664001 10688000 0 0 Deletion 23999 LOC_Os11g18800 retrotransposon protein, putative, unclassified FN3094-S Chr11 10664001 10688000 0 0 Deletion 23999 LOC_Os11g18810 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 10664001 10688000 0 0 Deletion 23999 LOC_Os11g18820 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 11412001 11436000 0 0 Deletion 23999 LOC_Os11g19820 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 11412001 11436000 0 0 Deletion 23999 LOC_Os11g19830 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 11412001 11436000 0 0 Deletion 23999 LOC_Os11g19840 O-methyltransferase, putative, expressed FN3094-S Chr11 11412001 11436000 0 0 Deletion 23999 LOC_Os11g19850 expressed protein FN3094-S Chr11 11475001 11536000 0 0 Deletion 60999 LOC_Os11g19950 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 11475001 11536000 0 0 Deletion 60999 LOC_Os11g19960 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 11475001 11536000 0 0 Deletion 60999 LOC_Os11g19970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 11475001 11536000 0 0 Deletion 60999 LOC_Os11g19980 hypothetical protein FN3094-S Chr11 11475001 11536000 0 0 Deletion 60999 LOC_Os11g19990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 11475001 11536000 0 0 Deletion 60999 LOC_Os11g20000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 11475001 11536000 0 0 Deletion 60999 LOC_Os11g20010 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 11475001 11536000 0 0 Deletion 60999 LOC_Os11g20020 expressed protein FN3094-S Chr11 11475001 11536000 0 0 Deletion 60999 LOC_Os11g20030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 11526809 11526857 0 0 Deletion 48 disruptive_inframe_deletion HET LOC_Os11g20030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 1198001 1227000 0 0 Deletion 28999 LOC_Os11g03270 nucleoside-triphosphatase, putative, expressed FN3094-S Chr11 1198001 1227000 0 0 Deletion 28999 LOC_Os11g03280 transposon protein, putative, unclassified, expressed FN3094-S Chr11 1198001 1227000 0 0 Deletion 28999 LOC_Os11g03290 nucleoside-triphosphatase, putative, expressed FN3094-S Chr11 12716001 12728000 0 0 Deletion 11999 LOC_Os11g22170 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 12716001 12728000 0 0 Deletion 11999 LOC_Os11g22180 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 12716001 12728000 0 0 Deletion 11999 LOC_Os11g22230 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 12920001 12963000 0 0 Deletion 42999 LOC_Os11g22480 retrotransposon, putative, centromere-specific, expressed FN3094-S Chr11 12920001 12963000 0 0 Deletion 42999 LOC_Os11g22490 hypothetical protein FN3094-S Chr11 12920001 12963000 0 0 Deletion 42999 LOC_Os11g22500 retrotransposon, putative, centromere-specific, expressed FN3094-S Chr11 12920001 12963000 0 0 Deletion 42999 LOC_Os11g22510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 12920001 12963000 0 0 Deletion 42999 LOC_Os11g22530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 12920001 12963000 0 0 Deletion 42999 LOC_Os11g22540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 13726001 13754000 0 0 Deletion 27999 LOC_Os11g24150 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 13726001 13754000 0 0 Deletion 27999 LOC_Os11g24170 CC-NBS-LRR protein, putative, expressed FN3094-S Chr11 14139001 14245000 0 0 Deletion 105999 LOC_Os11g24810 transposon protein, putative, unclassified, expressed FN3094-S Chr11 14139001 14245000 0 0 Deletion 105999 LOC_Os11g24824 expressed protein FN3094-S Chr11 14139001 14245000 0 0 Deletion 105999 LOC_Os11g24840 ankyrin repeat family protein, putative, expressed FN3094-S Chr11 14139001 14245000 0 0 Deletion 105999 LOC_Os11g24850 ankyrin repeat domain containing protein, expressed FN3094-S Chr11 14139001 14245000 0 0 Deletion 105999 LOC_Os11g24860 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr11 14139001 14245000 0 0 Deletion 105999 LOC_Os11g24870 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr11 14139001 14245000 0 0 Deletion 105999 LOC_Os11g24880 transposon protein, putative, CACTA, En/Spm sub-class FN3094-S Chr11 14139001 14245000 0 0 Deletion 105999 LOC_Os11g24890 expressed protein FN3094-S Chr11 14139001 14245000 0 0 Deletion 105999 LOC_Os11g24900 expressed protein FN3094-S Chr11 14139001 14245000 0 0 Deletion 105999 LOC_Os11g24910 hypothetical protein FN3094-S Chr11 14139001 14245000 0 0 Deletion 105999 LOC_Os11g24920 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 14139001 14245000 0 0 Deletion 105999 LOC_Os11g24930 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 14139001 14245000 0 0 Deletion 105999 LOC_Os11g24940 expressed protein FN3094-S Chr11 14139001 14245000 0 0 Deletion 105999 LOC_Os11g24950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 14139001 14245000 0 0 Deletion 105999 LOC_Os11g24964 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr11 14139001 14245000 0 0 Deletion 105999 LOC_Os11g24980 hypothetical protein FN3094-S Chr11 14139001 14245000 0 0 Deletion 105999 LOC_Os11g24990 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 14139001 14245000 0 0 Deletion 105999 LOC_Os11g25000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr11 14139001 14245000 0 0 Deletion 105999 LOC_Os11g25010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr11 14637001 14670000 0 0 Deletion 32999 LOC_Os11g25660 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr11 14637001 14670000 0 0 Deletion 32999 LOC_Os11g25670 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 14637001 14670000 0 0 Deletion 32999 LOC_Os11g25680 retrotransposon protein, putative, unclassified FN3094-S Chr11 14637001 14670000 0 0 Deletion 32999 LOC_Os11g25690 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 14637001 14670000 0 0 Deletion 32999 LOC_Os11g25700 tropinone reductase, putative, expressed FN3094-S Chr11 14637001 14670000 0 0 Deletion 32999 LOC_Os11g25720 cytokinin-N-glucosyltransferase 1, putative, expressed FN3094-S Chr11 15613259 Chr9 749691 0 Translocation 0 FN3094-S Chr11 1577623 1577625 0 0 Deletion 2 frameshift_variant HET LOC_Os11g03940 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr11 15982154 Chr9 13448483 0 Translocation 0 LOC_Os11g27760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 16014001 16033000 0 0 Deletion 18999 LOC_Os11g27830 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 16014001 16033000 0 0 Deletion 18999 LOC_Os11g27840 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr11 16014001 16033000 0 0 Deletion 18999 LOC_Os11g27850 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 16014001 16033000 0 0 Deletion 18999 LOC_Os11g28550 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr11 16593001 16632000 0 0 Deletion 38999 LOC_Os11g28710 expressed protein FN3094-S Chr11 16593001 16632000 0 0 Deletion 38999 LOC_Os11g28720 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 16593001 16632000 0 0 Deletion 38999 LOC_Os11g28730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 16917001 16937000 0 0 Deletion 19999 LOC_Os11g29200 protein transport protein, putative, expressed FN3094-S Chr11 17125001 17158000 0 0 Deletion 32999 LOC_Os11g29520 NBS-LRR disease resistance protein, putative, expressed FN3094-S Chr11 17125001 17158000 0 0 Deletion 32999 LOC_Os11g29530 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 17125001 17158000 0 0 Deletion 32999 LOC_Os11g29540 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 17125001 17158000 0 0 Deletion 32999 LOC_Os11g29550 retrotransposon protein, putative, unclassified FN3094-S Chr11 17125001 17158000 0 0 Deletion 32999 LOC_Os11g29560 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 17125001 17158000 0 0 Deletion 32999 LOC_Os11g29570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 18215661 18215673 0 0 Deletion 12 upstream_gene_variant HET FN3094-S Chr11 19095001 19108000 0 0 Deletion 12999 LOC_Os11g32330 retrotransposon protein, putative, unclassified FN3094-S Chr11 19095001 19108000 0 0 Deletion 12999 LOC_Os11g32340 hypothetical protein FN3094-S Chr11 19095001 19108000 0 0 Deletion 12999 LOC_Os11g32660 transposon protein, putative, unclassified, expressed FN3094-S Chr11 19185810 19185829 0 0 Deletion 19 INTERGENIC HET FN3094-S Chr11 21077001 21114000 0 0 Deletion 36999 LOC_Os11g35890 leucine rich repeat protein, putative, expressed FN3094-S Chr11 21077001 21114000 0 0 Deletion 36999 LOC_Os11g35900 hypothetical protein FN3094-S Chr11 21077001 21114000 0 0 Deletion 36999 LOC_Os11g35910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 21077001 21114000 0 0 Deletion 36999 LOC_Os11g35920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 21077001 21114000 0 0 Deletion 36999 LOC_Os11g35930 chalcone synthase, putative, expressed FN3094-S Chr11 21077001 21114000 0 0 Deletion 36999 LOC_Os11g35940 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr11 21355001 21371000 0 0 Deletion 15999 LOC_Os11g36960 dnaJ domain containing protein, expressed FN3094-S Chr11 21644881 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3094-S Chr11 23270001 23313000 0 0 Deletion 42999 LOC_Os11g39100 expressed protein FN3094-S Chr11 23270001 23313000 0 0 Deletion 42999 LOC_Os11g39110 expressed protein FN3094-S Chr11 23270001 23313000 0 0 Deletion 42999 LOC_Os11g39120 expressed protein FN3094-S Chr11 23270001 23313000 0 0 Deletion 42999 LOC_Os11g39130 zinc finger, C3HC4 type family protein, expressed FN3094-S Chr11 23270001 23313000 0 0 Deletion 42999 LOC_Os11g39140 thioredoxin domain-containing protein 9, putative, expressed FN3094-S Chr11 23270001 23313000 0 0 Deletion 42999 LOC_Os11g39150 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 23270001 23313000 0 0 Deletion 42999 LOC_Os11g39160 NBS-LRR disease resistance protein, putative, expressed FN3094-S Chr11 24237317 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3094-S Chr11 24659001 24699000 0 0 Deletion 39999 LOC_Os11g41170 disease resistance protein RPM1, putative, expressed FN3094-S Chr11 24659001 24699000 0 0 Deletion 39999 LOC_Os11g41180 expressed protein FN3094-S Chr11 24659001 24699000 0 0 Deletion 39999 LOC_Os11g41190 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 24724001 24766000 0 0 Deletion 41999 LOC_Os11g41240 ATBPM6, putative FN3094-S Chr11 24724001 24766000 0 0 Deletion 41999 LOC_Os11g41250 expressed protein FN3094-S Chr11 24724001 24766000 0 0 Deletion 41999 LOC_Os11g41260 snRNP protein, putative, expressed FN3094-S Chr11 24724001 24766000 0 0 Deletion 41999 LOC_Os11g41270 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 24724001 24766000 0 0 Deletion 41999 LOC_Os11g41280 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 24724001 24766000 0 0 Deletion 41999 LOC_Os11g41290 MrBTB5 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH-related domain, expressed FN3094-S Chr11 24724001 24766000 0 0 Deletion 41999 LOC_Os11g41300 MBTB65 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3094-S Chr11 24724001 24766000 0 0 Deletion 41999 LOC_Os11g41310 MBTB66 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3094-S Chr11 24871001 24937000 0 0 Deletion 65999 LOC_Os11g41470 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 24871001 24937000 0 0 Deletion 65999 LOC_Os11g41480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 24871001 24937000 0 0 Deletion 65999 LOC_Os11g41490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 24871001 24937000 0 0 Deletion 65999 LOC_Os11g41500 NC domain-containing protein, putative, expressed FN3094-S Chr11 24871001 24937000 0 0 Deletion 65999 LOC_Os11g41510 expressed protein FN3094-S Chr11 24871001 24937000 0 0 Deletion 65999 LOC_Os11g41520 hypothetical protein FN3094-S Chr11 24871001 24937000 0 0 Deletion 65999 LOC_Os11g41530 expressed protein FN3094-S Chr11 24871001 24937000 0 0 Deletion 65999 LOC_Os11g41540 disease resistance RPP8-like protein 3, putative, expressed FN3094-S Chr11 24871001 24937000 0 0 Deletion 65999 LOC_Os11g41550 expressed protein FN3094-S Chr11 24871001 24937000 0 0 Deletion 65999 LOC_Os11g41560 OsFBX427 - F-box domain containing protein, expressed FN3094-S Chr11 24871001 24937000 0 0 Deletion 65999 LOC_Os11g41570 OsFBX428 - F-box domain containing protein, expressed FN3094-S Chr11 25376001 25394000 0 0 Deletion 17999 LOC_Os11g42150 hypothetical protein FN3094-S Chr11 25376001 25394000 0 0 Deletion 17999 LOC_Os11g42180 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr11 25462001 25485000 0 0 Deletion 22999 LOC_Os11g42280 OsFBX433 - F-box domain containing protein, expressed FN3094-S Chr11 25462001 25485000 0 0 Deletion 22999 LOC_Os11g42290 transferase family protein, putative, expressed FN3094-S Chr11 25462001 25485000 0 0 Deletion 22999 LOC_Os11g42300 OsFBX434 - F-box domain containing protein, expressed FN3094-S Chr11 25462001 25485000 0 0 Deletion 22999 LOC_Os11g42310 OsFBL58 - F-box domain and LRR containing protein, expressed FN3094-S Chr11 25462001 25485000 0 0 Deletion 22999 LOC_Os11g42320 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 25462001 25485000 0 0 Deletion 22999 LOC_Os11g42630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 26428001 26448000 0 0 Deletion 19999 LOC_Os11g43760 lipase class 3 family protein, putative, expressed FN3094-S Chr11 26428001 26448000 0 0 Deletion 19999 LOC_Os11g43770 Leucine Rich Repeat family protein, expressed FN3094-S Chr11 26428001 26448000 0 0 Deletion 19999 LOC_Os11g43780 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 26585001 26602000 0 0 Deletion 16999 LOC_Os11g44000 expressed protein FN3094-S Chr11 26585001 26602000 0 0 Deletion 16999 LOC_Os11g44014 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 26624001 26645000 0 0 Deletion 20999 LOC_Os11g44060 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr11 26624001 26645000 0 0 Deletion 20999 LOC_Os11g44070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 26624001 26645000 0 0 Deletion 20999 LOC_Os11g44084 transposon protein, putative, CACTA, En/Spm sub-class FN3094-S Chr11 26624001 26645000 0 0 Deletion 20999 LOC_Os11g44100 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr11 26624001 26645000 0 0 Deletion 20999 LOC_Os11g44110 expressed protein FN3094-S Chr11 26624001 26645000 0 0 Deletion 20999 LOC_Os11g44120 hypothetical protein FN3094-S Chr11 27044991 27044991 0 0 Insertion 1 intron_variant HET FN3094-S Chr11 27420981 Chr7 17149932 0 Translocation 0 FN3094-S Chr11 28526001 28534000 0 0 Deletion 7999 LOC_Os12g01320 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 3552001 3587000 0 0 Deletion 34999 LOC_Os11g07130 receptor kinase, putative, expressed FN3094-S Chr11 3552001 3587000 0 0 Deletion 34999 LOC_Os11g07140 receptor kinase, putative, expressed FN3094-S Chr11 3552001 3587000 0 0 Deletion 34999 LOC_Os11g07150 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 3552001 3587000 0 0 Deletion 34999 LOC_Os11g07160 receptor protein kinase CLAVATA1 precursor, putative, expressed FN3094-S Chr11 3552001 3587000 0 0 Deletion 34999 LOC_Os11g07170 receptor kinase, putative, expressed FN3094-S Chr11 3552001 3587000 0 0 Deletion 34999 LOC_Os11g07180 receptor protein kinase CLAVATA1 precursor, putative, expressed FN3094-S Chr11 3552001 3587000 0 0 Deletion 34999 LOC_Os11g07225 expressed protein FN3094-S Chr11 5563001 5588000 0 0 Deletion 24999 LOC_Os11g10250 expressed protein FN3094-S Chr11 5563001 5588000 0 0 Deletion 24999 LOC_Os11g10260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 5563001 5588000 0 0 Deletion 24999 LOC_Os11g10270 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr11 5563001 5588000 0 0 Deletion 24999 LOC_Os11g10280 receptor-like protein kinase, putative, expressed FN3094-S Chr11 5563001 5588000 0 0 Deletion 24999 LOC_Os11g10290 S-domain receptor-like protein kinase, putative, expressed FN3094-S Chr11 5678001 5696000 0 0 Deletion 17999 LOC_Os11g10440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr11 5678001 5696000 0 0 Deletion 17999 LOC_Os11g10450 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr11 5678001 5696000 0 0 Deletion 17999 LOC_Os11g10560 transposon protein, putative, unclassified, expressed FN3094-S Chr11 8475001 8503000 0 0 Deletion 27999 LOC_Os11g15070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 8475001 8503000 0 0 Deletion 27999 LOC_Os11g15080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 8475001 8503000 0 0 Deletion 27999 LOC_Os11g15090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 8475001 8503000 0 0 Deletion 27999 LOC_Os11g15100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr11 9229001 9328000 0 0 Deletion 98999 LOC_Os11g16640 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr11 9229001 9328000 0 0 Deletion 98999 LOC_Os11g16650 hypothetical protein FN3094-S Chr11 9229001 9328000 0 0 Deletion 98999 LOC_Os11g16660 hypothetical protein FN3094-S Chr11 9229001 9328000 0 0 Deletion 98999 LOC_Os11g16670 expressed protein FN3094-S Chr11 9229001 9328000 0 0 Deletion 98999 LOC_Os11g16680 transferase family protein, putative, expressed FN3094-S Chr11 9229001 9328000 0 0 Deletion 98999 LOC_Os11g16690 retrotransposon protein, putative, unclassified FN3094-S Chr11 9229001 9328000 0 0 Deletion 98999 LOC_Os11g16710 expressed protein FN3094-S Chr11 9229001 9328000 0 0 Deletion 98999 LOC_Os11g16720 expressed protein FN3094-S Chr11 9229001 9328000 0 0 Deletion 98999 LOC_Os11g16730 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr11 9229001 9328000 0 0 Deletion 98999 LOC_Os11g16740 transposon protein, putative, unclassified, expressed FN3094-S Chr11 9229001 9328000 0 0 Deletion 98999 LOC_Os11g16750 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr11 9229001 9328000 0 0 Deletion 98999 LOC_Os11g16760 hypothetical protein FN3094-S Chr11 9229001 9328000 0 0 Deletion 98999 LOC_Os11g16770 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed FN3094-S Chr11 9229001 9328000 0 0 Deletion 98999 LOC_Os11g16780 expressed protein FN3094-S Chr11 9229001 9328000 0 0 Deletion 98999 LOC_Os11g16790 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr11 9510001 9554000 0 0 Deletion 43999 LOC_Os11g17150 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 9510001 9554000 0 0 Deletion 43999 LOC_Os11g17160 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 9510001 9554000 0 0 Deletion 43999 LOC_Os11g17320 hypothetical protein FN3094-S Chr11 9707001 9758000 0 0 Deletion 50999 LOC_Os11g17410 transposon protein, putative, CACTA, En/Spm sub-class FN3094-S Chr11 9707001 9758000 0 0 Deletion 50999 LOC_Os11g17420 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 9707001 9758000 0 0 Deletion 50999 LOC_Os11g17430 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 9707001 9758000 0 0 Deletion 50999 LOC_Os11g17440 enoyl-CoA hydratase/isomerase family protein, expressed FN3094-S Chr11 9707001 9758000 0 0 Deletion 50999 LOC_Os11g17450 expressed protein FN3094-S Chr11 9707001 9758000 0 0 Deletion 50999 LOC_Os11g17460 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr11 9707001 9758000 0 0 Deletion 50999 LOC_Os11g17480 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr11 9707001 9758000 0 0 Deletion 50999 LOC_Os11g17490 expressed protein FN3094-S Chr11 9707001 9758000 0 0 Deletion 50999 LOC_Os11g17504 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr11 9982001 10014000 0 0 Deletion 31999 LOC_Os11g17830 transposon protein, putative, unclassified, expressed FN3094-S Chr11 9982001 10014000 0 0 Deletion 31999 LOC_Os11g17840 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr11 9982001 10014000 0 0 Deletion 31999 LOC_Os11g17850 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr11 9982001 10014000 0 0 Deletion 31999 LOC_Os11g17870 expressed protein FN3094-S Chr11 9982001 10014000 0 0 Deletion 31999 LOC_Os11g17880 expressed protein FN3094-S Chr12 11211001 11231000 0 0 Deletion 19999 LOC_Os12g19350 expressed protein FN3094-S Chr12 11755001 11791000 0 0 Deletion 35999 LOC_Os12g20169 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr12 11755001 11791000 0 0 Deletion 35999 LOC_Os12g20190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr12 11755001 11791000 0 0 Deletion 35999 LOC_Os12g20200 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr12 11755001 11791000 0 0 Deletion 35999 LOC_Os12g20210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr12 11825001 11856000 0 0 Deletion 30999 LOC_Os12g20270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr12 11825001 11856000 0 0 Deletion 30999 LOC_Os12g20280 expressed protein FN3094-S Chr12 11825001 11856000 0 0 Deletion 30999 LOC_Os12g20290 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr12 11825001 11856000 0 0 Deletion 30999 LOC_Os12g20300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr12 11881001 11893000 0 0 Deletion 11999 LOC_Os12g20360 hypothetical protein FN3094-S Chr12 11881001 11893000 0 0 Deletion 11999 LOC_Os12g20370 expressed protein FN3094-S Chr12 11881001 11893000 0 0 Deletion 11999 LOC_Os12g21660 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr12 12242001 12264000 0 0 Deletion 21999 LOC_Os12g21770 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr12 12242001 12264000 0 0 Deletion 21999 LOC_Os12g21780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr12 12242001 12264000 0 0 Deletion 21999 LOC_Os12g21784 expressed protein FN3094-S Chr12 12242001 12264000 0 0 Deletion 21999 LOC_Os12g21990 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr12 13116732 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3094-S Chr12 14133001 14165000 0 0 Deletion 31999 LOC_Os12g24680 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr12 14133001 14165000 0 0 Deletion 31999 LOC_Os12g24690 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr12 14133001 14165000 0 0 Deletion 31999 LOC_Os12g24700 retrotransposon protein, putative, Ty1-copia subclass FN3094-S Chr12 14200001 14208000 0 0 Deletion 7999 LOC_Os12g24760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr12 14200001 14208000 0 0 Deletion 7999 LOC_Os12g24770 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr12 14200001 14208000 0 0 Deletion 7999 LOC_Os12g24800 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed FN3094-S Chr12 1426001 1437000 0 0 Deletion 10999 LOC_Os12g03580 expressed protein FN3094-S Chr12 1426001 1437000 0 0 Deletion 10999 LOC_Os12g03594 OsFBX437 - F-box domain containing protein, expressed FN3094-S Chr12 1426001 1437000 0 0 Deletion 10999 LOC_Os12g03750 Leucine Rich Repeat family protein, expressed FN3094-S Chr12 14538001 14557000 0 0 Deletion 18999 LOC_Os12g25290 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr12 14538001 14557000 0 0 Deletion 18999 LOC_Os12g26160 expressed protein FN3094-S Chr12 15329001 15384000 0 0 Deletion 54999 LOC_Os12g26290 alpha-DOX2, putative, expressed FN3094-S Chr12 15329001 15384000 0 0 Deletion 54999 LOC_Os12g26300 expressed protein FN3094-S Chr12 15329001 15384000 0 0 Deletion 54999 LOC_Os12g26310 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr12 15329001 15384000 0 0 Deletion 54999 LOC_Os12g26320 retrotransposon, putative, centromere-specific, expressed FN3094-S Chr12 15329001 15384000 0 0 Deletion 54999 LOC_Os12g26330 expressed protein FN3094-S Chr12 15540968 15540969 0 0 Deletion 1 intergenic_region HET FN3094-S Chr12 16106001 16142000 0 0 Deletion 35999 LOC_Os12g27400 transposon protein, putative, CACTA, En/Spm sub-class FN3094-S Chr12 16106001 16142000 0 0 Deletion 35999 LOC_Os12g27410 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr12 16106001 16142000 0 0 Deletion 35999 LOC_Os12g27420 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr12 16106001 16142000 0 0 Deletion 35999 LOC_Os12g27700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr12 16335001 16382000 0 0 Deletion 46999 LOC_Os12g27700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr12 16335001 16382000 0 0 Deletion 46999 LOC_Os12g27710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr12 16335001 16382000 0 0 Deletion 46999 LOC_Os12g27720 hypothetical protein FN3094-S Chr12 16335001 16382000 0 0 Deletion 46999 LOC_Os12g27730 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr12 16335001 16382000 0 0 Deletion 46999 LOC_Os12g27740 expressed protein FN3094-S Chr12 16335001 16382000 0 0 Deletion 46999 LOC_Os12g27750 OsFBX441 - F-box domain containing protein, expressed FN3094-S Chr12 16335001 16382000 0 0 Deletion 46999 LOC_Os12g27760 OsFBX442 - F-box domain containing protein, expressed FN3094-S Chr12 16335001 16382000 0 0 Deletion 46999 LOC_Os12g27770 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr12 16335001 16382000 0 0 Deletion 46999 LOC_Os12g27780 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr12 16456001 16472000 0 0 Deletion 15999 LOC_Os12g27920 expressed protein FN3094-S Chr12 16456001 16472000 0 0 Deletion 15999 LOC_Os12g27930 expressed protein FN3094-S Chr12 16456001 16472000 0 0 Deletion 15999 LOC_Os12g27940 expressed protein FN3094-S Chr12 16456001 16472000 0 0 Deletion 15999 LOC_Os12g28020 hypothetical protein FN3094-S Chr12 16709001 16725000 0 0 Deletion 15999 LOC_Os12g28280 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr12 1708001 1721000 0 0 Deletion 12999 LOC_Os12g04060 transcription initiation factor, putative, expressed FN3094-S Chr12 1708001 1721000 0 0 Deletion 12999 LOC_Os12g04070 expressed protein FN3094-S Chr12 1708001 1721000 0 0 Deletion 12999 LOC_Os12g04080 transferase family protein, putative, expressed FN3094-S Chr12 1708001 1721000 0 0 Deletion 12999 LOC_Os12g04090 zinc finger, C3HC4 type domain containing protein FN3094-S Chr12 1708001 1721000 0 0 Deletion 12999 LOC_Os12g04100 cytochrome P450, putative, expressed FN3094-S Chr12 1708001 1721000 0 0 Deletion 12999 LOC_Os12g04110 pentatricopeptide, putative, expressed FN3094-S Chr12 17186372 17186375 0 0 Deletion 3 downstream_gene_variant HET FN3094-S Chr12 19270001 19287000 0 0 Deletion 16999 LOC_Os12g31990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr12 19270001 19287000 0 0 Deletion 16999 LOC_Os12g32000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr12 19270001 19287000 0 0 Deletion 16999 LOC_Os12g32040 ZmEBE-1 protein, putative, expressed FN3094-S Chr12 19330001 19421000 0 0 Deletion 90999 LOC_Os12g32050 expressed protein FN3094-S Chr12 19330001 19421000 0 0 Deletion 90999 LOC_Os12g32060 expressed protein FN3094-S Chr12 19330001 19421000 0 0 Deletion 90999 LOC_Os12g32080 expressed protein FN3094-S Chr12 19330001 19421000 0 0 Deletion 90999 LOC_Os12g32090 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr12 19330001 19421000 0 0 Deletion 90999 LOC_Os12g32110 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr12 19330001 19421000 0 0 Deletion 90999 LOC_Os12g32120 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr12 19330001 19421000 0 0 Deletion 90999 LOC_Os12g32130 trehalose phosphatase, putative, expressed FN3094-S Chr12 19330001 19421000 0 0 Deletion 90999 LOC_Os12g32140 transposon protein, putative, unclassified, expressed FN3094-S Chr12 19330001 19421000 0 0 Deletion 90999 LOC_Os12g32150 expressed protein FN3094-S Chr12 19330001 19421000 0 0 Deletion 90999 LOC_Os12g32160 expressed protein FN3094-S Chr12 19330001 19421000 0 0 Deletion 90999 LOC_Os12g32170 expressed protein FN3094-S Chr12 19428808 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3094-S Chr12 21110001 21128000 0 0 Deletion 17999 LOC_Os12g34790 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr12 21110001 21128000 0 0 Deletion 17999 LOC_Os12g35720 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr12 2508001 2522000 0 0 Deletion 13999 LOC_Os12g05490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr12 2508001 2522000 0 0 Deletion 13999 LOC_Os12g05500 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr12 2508001 2522000 0 0 Deletion 13999 LOC_Os12g05510 expressed protein FN3094-S Chr12 2508001 2522000 0 0 Deletion 13999 LOC_Os12g05840 Cupin domain containing protein, expressed FN3094-S Chr12 2798497 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3094-S Chr12 3132001 3150000 0 0 Deletion 17999 LOC_Os12g06510 calcineurin B, putative, expressed FN3094-S Chr12 3132001 3150000 0 0 Deletion 17999 LOC_Os12g06910 nucleolar protein family 6, putative, expressed FN3094-S Chr12 3460001 3477000 0 0 Deletion 16999 LOC_Os12g07070 hypothetical protein FN3094-S Chr12 3460001 3477000 0 0 Deletion 16999 LOC_Os12g07080 transposon protein, putative, Mutator sub-class, expressed FN3094-S Chr12 3460001 3477000 0 0 Deletion 16999 LOC_Os12g08110 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr12 4138001 4152000 0 0 Deletion 13999 LOC_Os12g08130 amino acid transporter, putative, expressed FN3094-S Chr12 4138001 4152000 0 0 Deletion 13999 LOC_Os12g08430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr12 4291001 4334000 0 0 Deletion 42999 LOC_Os12g08440 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr12 4291001 4334000 0 0 Deletion 42999 LOC_Os12g08450 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr12 4291001 4334000 0 0 Deletion 42999 LOC_Os12g08460 retrotransposon protein, putative, unclassified FN3094-S Chr12 4291001 4334000 0 0 Deletion 42999 LOC_Os12g08470 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr12 4291001 4334000 0 0 Deletion 42999 LOC_Os12g08480 expressed protein FN3094-S Chr12 4291001 4334000 0 0 Deletion 42999 LOC_Os12g08490 transposon protein, putative, unclassified, expressed FN3094-S Chr12 4291001 4334000 0 0 Deletion 42999 LOC_Os12g08500 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr12 4291001 4334000 0 0 Deletion 42999 LOC_Os12g08510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr12 4291001 4334000 0 0 Deletion 42999 LOC_Os12g08530 expressed protein FN3094-S Chr12 4291001 4334000 0 0 Deletion 42999 LOC_Os12g08540 retrotransposon protein, putative, unclassified FN3094-S Chr12 4468598 4468856 0 0 Inversion 258 FN3094-S Chr12 4687001 4774000 0 0 Deletion 86999 LOC_Os12g08980 syntaxin-related protein KNOLLE, putative, expressed FN3094-S Chr12 4687001 4774000 0 0 Deletion 86999 LOC_Os12g08990 hypothetical protein FN3094-S Chr12 4687001 4774000 0 0 Deletion 86999 LOC_Os12g09000 phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase, putative, expressed FN3094-S Chr12 4687001 4774000 0 0 Deletion 86999 LOC_Os12g09010 expressed protein FN3094-S Chr12 4687001 4774000 0 0 Deletion 86999 LOC_Os12g09020 retrotransposon protein, putative, unclassified FN3094-S Chr12 4687001 4774000 0 0 Deletion 86999 LOC_Os12g09030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr12 4687001 4774000 0 0 Deletion 86999 LOC_Os12g09050 hypothetical protein FN3094-S Chr12 4687001 4774000 0 0 Deletion 86999 LOC_Os12g09060 trehalose phosphatase, putative FN3094-S Chr12 4687001 4774000 0 0 Deletion 86999 LOC_Os12g09070 expressed protein FN3094-S Chr12 4687001 4774000 0 0 Deletion 86999 LOC_Os12g09080 brevis radix, putative, expressed FN3094-S Chr12 4687001 4774000 0 0 Deletion 86999 LOC_Os12g09089 protein kinase PKN/PRK1, effector, putative, expressed FN3094-S Chr12 4687001 4774000 0 0 Deletion 86999 LOC_Os12g09120 mRNA-capping enzyme, putative, expressed FN3094-S Chr12 4687001 4774000 0 0 Deletion 86999 LOC_Os12g09710 NBS-LRR disease resistance protein, putative, expressed FN3094-S Chr12 5119001 5149000 0 0 Deletion 29999 LOC_Os12g09710 NBS-LRR disease resistance protein, putative, expressed FN3094-S Chr12 5119001 5149000 0 0 Deletion 29999 LOC_Os12g09720 dirigent, putative, expressed FN3094-S Chr12 5119001 5149000 0 0 Deletion 29999 LOC_Os12g09739 pollen signalling protein with adenylyl cyclase activity, putative, expressed FN3094-S Chr12 5282001 5310000 0 0 Deletion 27999 LOC_Os12g09990 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr12 5282001 5310000 0 0 Deletion 27999 LOC_Os12g10000 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr12 5282001 5310000 0 0 Deletion 27999 LOC_Os12g10010 expressed protein FN3094-S Chr12 5282001 5310000 0 0 Deletion 27999 LOC_Os12g10020 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr12 8118001 8144000 0 0 Deletion 25999 LOC_Os12g14270 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr12 8118001 8144000 0 0 Deletion 25999 LOC_Os12g14280 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr12 8118001 8144000 0 0 Deletion 25999 LOC_Os12g14290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr12 8118001 8144000 0 0 Deletion 25999 LOC_Os12g14630 retrotransposon protein, putative, LINE subclass, expressed FN3094-S Chr12 8352001 8378000 0 0 Deletion 25999 LOC_Os12g14630 retrotransposon protein, putative, LINE subclass, expressed FN3094-S Chr12 8352001 8378000 0 0 Deletion 25999 LOC_Os12g14640 transposon protein, putative, CACTA, En/Spm sub-class FN3094-S Chr12 8352001 8378000 0 0 Deletion 25999 LOC_Os12g14650 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr12 9896001 9917000 0 0 Deletion 20999 LOC_Os12g17290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr12 9896001 9917000 0 0 Deletion 20999 LOC_Os12g17300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr12 9896001 9917000 0 0 Deletion 20999 LOC_Os12g17310 prefoldin, putative, expressed FN3094-S Chr12 9896001 9917000 0 0 Deletion 20999 LOC_Os12g17320 polyprenyl synthetase, putative, expressed FN3094-S Chr2 13534001 13559000 0 0 Deletion 24999 LOC_Os02g22730 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr2 13534001 13559000 0 0 Deletion 24999 LOC_Os02g22740 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr2 13534001 13559000 0 0 Deletion 24999 LOC_Os02g22750 expressed protein FN3094-S Chr2 13534001 13559000 0 0 Deletion 24999 LOC_Os02g22760 retrotransposon protein, putative, LINE subclass, expressed FN3094-S Chr2 13534001 13559000 0 0 Deletion 24999 LOC_Os02g22770 expressed protein FN3094-S Chr2 13534001 13559000 0 0 Deletion 24999 LOC_Os02g24150 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr2 14370001 14421000 0 0 Deletion 50999 LOC_Os02g24780 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr2 14370001 14421000 0 0 Deletion 50999 LOC_Os02g24790 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr2 14370001 14421000 0 0 Deletion 50999 LOC_Os02g24800 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr2 14370001 14421000 0 0 Deletion 50999 LOC_Os02g24810 expressed protein FN3094-S Chr2 14370001 14421000 0 0 Deletion 50999 LOC_Os02g24820 hypothetical protein FN3094-S Chr2 14370001 14421000 0 0 Deletion 50999 LOC_Os02g24830 expressed protein FN3094-S Chr2 14370001 14421000 0 0 Deletion 50999 LOC_Os02g24840 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr2 14370001 14421000 0 0 Deletion 50999 LOC_Os02g24850 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr2 14370001 14421000 0 0 Deletion 50999 LOC_Os02g24860 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr2 14370001 14421000 0 0 Deletion 50999 LOC_Os02g24870 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr2 14695001 14798000 0 0 Deletion 102999 LOC_Os02g25250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr2 14695001 14798000 0 0 Deletion 102999 LOC_Os02g25260 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr2 14695001 14798000 0 0 Deletion 102999 LOC_Os02g25270 expressed protein FN3094-S Chr2 14695001 14798000 0 0 Deletion 102999 LOC_Os02g25280 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr2 14695001 14798000 0 0 Deletion 102999 LOC_Os02g25290 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr2 14695001 14798000 0 0 Deletion 102999 LOC_Os02g25300 expressed protein FN3094-S Chr2 14695001 14798000 0 0 Deletion 102999 LOC_Os02g25310 zinc knuckle family protein, expressed FN3094-S Chr2 14695001 14798000 0 0 Deletion 102999 LOC_Os02g25320 transposon protein, putative, CACTA, En/Spm sub-class FN3094-S Chr2 14695001 14798000 0 0 Deletion 102999 LOC_Os02g25330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr2 14695001 14798000 0 0 Deletion 102999 LOC_Os02g25340 retrotransposon, putative, centromere-specific FN3094-S Chr2 14695001 14798000 0 0 Deletion 102999 LOC_Os02g25350 retrotransposon, putative, centromere-specific FN3094-S Chr2 14695001 14798000 0 0 Deletion 102999 LOC_Os02g25360 hypothetical protein FN3094-S Chr2 14695001 14798000 0 0 Deletion 102999 LOC_Os02g25370 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr2 14695001 14798000 0 0 Deletion 102999 LOC_Os02g25380 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr2 15931001 15953000 0 0 Deletion 21999 LOC_Os02g27110 expressed protein FN3094-S Chr2 15931001 15953000 0 0 Deletion 21999 LOC_Os02g27120 retrotransposon protein, putative, LINE subclass, expressed FN3094-S Chr2 1616462 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3094-S Chr2 16202560 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3094-S Chr2 16202587 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3094-S Chr2 16202593 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3094-S Chr2 16313001 16330000 0 0 Deletion 16999 LOC_Os02g27550 hypothetical protein FN3094-S Chr2 16313001 16330000 0 0 Deletion 16999 LOC_Os02g27560 expressed protein FN3094-S Chr2 16313001 16330000 0 0 Deletion 16999 LOC_Os02g27570 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr2 17164001 17181000 0 0 Deletion 16999 LOC_Os02g29000 Cupin domain containing protein, expressed FN3094-S Chr2 17164001 17181000 0 0 Deletion 16999 LOC_Os02g29010 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr2 17164001 17181000 0 0 Deletion 16999 LOC_Os02g29020 Cupin domain containing protein, expressed FN3094-S Chr2 17164001 17181000 0 0 Deletion 16999 LOC_Os02g29030 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr2 17164001 17181000 0 0 Deletion 16999 LOC_Os02g29070 protein kinase domain containing protein, expressed FN3094-S Chr2 19524001 19570000 0 0 Deletion 45999 LOC_Os02g32880 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr2 19524001 19570000 0 0 Deletion 45999 LOC_Os02g32890 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr2 19524001 19570000 0 0 Deletion 45999 LOC_Os02g32900 expressed protein FN3094-S Chr2 19524001 19570000 0 0 Deletion 45999 LOC_Os02g32910 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr2 19524001 19570000 0 0 Deletion 45999 LOC_Os02g32920 expressed protein FN3094-S Chr2 19524001 19570000 0 0 Deletion 45999 LOC_Os02g32930 bile acid sodium symporter, putative, expressed FN3094-S Chr2 19524001 19570000 0 0 Deletion 45999 LOC_Os02g32940 expressed protein FN3094-S Chr2 19524001 19570000 0 0 Deletion 45999 LOC_Os02g32950 RCN2 Centroradialis-like1 homologous to TFL1 gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed FN3094-S Chr2 19673811 19673814 0 0 Deletion 3 INTERGENIC HOMO FN3094-S Chr2 19691604 19691606 0 0 Deletion 2 INTERGENIC HOMO FN3094-S Chr2 19809001 19854000 0 0 Deletion 44999 LOC_Os02g33360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr2 19809001 19854000 0 0 Deletion 44999 LOC_Os02g33370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr2 19809001 19854000 0 0 Deletion 44999 LOC_Os02g33380 pectinesterase inhibitor domain containing protein, putative, expressed FN3094-S Chr2 19809001 19854000 0 0 Deletion 44999 LOC_Os02g33390 pectinesterase inhibitor domain containing protein, putative, expressed FN3094-S Chr2 19809001 19854000 0 0 Deletion 44999 LOC_Os02g33400 OsFBL9 - F-box domain and LRR containing protein, expressed FN3094-S Chr2 19809001 19854000 0 0 Deletion 44999 LOC_Os02g33410 expressed protein FN3094-S Chr2 19809001 19854000 0 0 Deletion 44999 LOC_Os02g33910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr2 21196001 21222000 0 0 Deletion 25999 LOC_Os02g35280 retrotransposon protein, putative, unclassified FN3094-S Chr2 21196001 21222000 0 0 Deletion 25999 LOC_Os02g35290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr2 22109001 22138000 0 0 Deletion 28999 LOC_Os02g36619 exo70 exocyst complex subunit, putative, expressed FN3094-S Chr2 22109001 22138000 0 0 Deletion 28999 LOC_Os02g36640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr2 22109001 22138000 0 0 Deletion 28999 LOC_Os02g36650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr2 22109001 22138000 0 0 Deletion 28999 LOC_Os02g36660 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr2 22109001 22138000 0 0 Deletion 28999 LOC_Os02g36670 expressed protein FN3094-S Chr2 23655001 23692000 0 0 Deletion 36999 LOC_Os02g39170 GDSL-like lipase/acylhydrolase, putative, expressed FN3094-S Chr2 23655001 23692000 0 0 Deletion 36999 LOC_Os02g39180 expressed protein FN3094-S Chr2 23655001 23692000 0 0 Deletion 36999 LOC_Os02g39190 expressed protein FN3094-S Chr2 23655001 23692000 0 0 Deletion 36999 LOC_Os02g39200 nucleotide-sugar transporter family protein, putative, expressed FN3094-S Chr2 23655001 23692000 0 0 Deletion 36999 LOC_Os02g39210 expressed protein FN3094-S Chr2 23655001 23692000 0 0 Deletion 36999 LOC_Os02g39220 transposon protein, putative, unclassified, expressed FN3094-S Chr2 23655001 23692000 0 0 Deletion 36999 LOC_Os02g41470 tRNA synthetases class II domain containing protein, expressed FN3094-S Chr2 23919001 23938000 0 0 Deletion 18999 FN3094-S Chr2 26810001 26832000 0 0 Deletion 21999 LOC_Os02g44330 rho guanine nucleotide exchange factor, putative, expressed FN3094-S Chr2 26810001 26832000 0 0 Deletion 21999 LOC_Os02g44340 expressed protein FN3094-S Chr2 26810001 26832000 0 0 Deletion 21999 LOC_Os02g44350 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr2 26810001 26832000 0 0 Deletion 21999 LOC_Os02g44410 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr2 28915001 28938000 0 0 Deletion 22999 LOC_Os02g47360 PPR repeat domain containing protein, putative, expressed FN3094-S Chr2 28915001 28938000 0 0 Deletion 22999 LOC_Os02g47370 transcription factor TF2, putative, expressed FN3094-S Chr2 28915001 28938000 0 0 Deletion 22999 LOC_Os02g47380 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr2 28915001 28938000 0 0 Deletion 22999 LOC_Os02g47390 expressed protein FN3094-S Chr2 28915001 28938000 0 0 Deletion 22999 LOC_Os02g47400 pectinacetylesterase domain containing protein, expressed FN3094-S Chr2 28915001 28938000 0 0 Deletion 22999 LOC_Os02g47480 expressed protein FN3094-S Chr2 29014001 29041000 0 0 Deletion 26999 LOC_Os02g47480 expressed protein FN3094-S Chr2 29014001 29041000 0 0 Deletion 26999 LOC_Os02g47490 expressed protein FN3094-S Chr2 29014001 29041000 0 0 Deletion 26999 LOC_Os02g47500 nodulin, putative, expressed FN3094-S Chr2 29014001 29041000 0 0 Deletion 26999 LOC_Os02g47510 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed FN3094-S Chr2 29014001 29041000 0 0 Deletion 26999 LOC_Os02g47520 expressed protein FN3094-S Chr2 29014001 29041000 0 0 Deletion 26999 LOC_Os02g47530 expressed protein FN3094-S Chr2 29756001 29773000 0 0 Deletion 16999 LOC_Os02g48620 tetratricopeptide repeat, putative, expressed FN3094-S Chr2 30944001 30968000 0 0 Deletion 23999 LOC_Os02g50670 expressed protein FN3094-S Chr2 30944001 30968000 0 0 Deletion 23999 LOC_Os02g50680 AAA-type ATPase family protein, putative, expressed FN3094-S Chr2 30944001 30968000 0 0 Deletion 23999 LOC_Os02g50690 GDSL-like lipase/acylhydrolase, putative, expressed FN3094-S Chr2 30944001 30968000 0 0 Deletion 23999 LOC_Os02g51380 expressed protein FN3094-S Chr2 32499001 32514000 0 0 Deletion 14999 LOC_Os02g53120 Peptidase family C50, putative, expressed FN3094-S Chr2 32499001 32514000 0 0 Deletion 14999 LOC_Os02g53130 nitrate reductase, putative, expressed FN3094-S Chr2 3316001 3334000 0 0 Deletion 17999 LOC_Os02g06600 receptor-like protein kinase 2 precursor, putative, expressed FN3094-S Chr2 3316001 3334000 0 0 Deletion 17999 LOC_Os02g06605 expressed protein FN3094-S Chr2 3316001 3334000 0 0 Deletion 17999 LOC_Os02g06610 expressed protein FN3094-S Chr2 3316001 3334000 0 0 Deletion 17999 LOC_Os02g06700 ribosomal protein, putative, expressed FN3094-S Chr2 34141028 34141028 0 0 Insertion 2 downstream_gene_variant HET FN3094-S Chr2 34287786 34287786 0 0 Insertion 4 INTERGENIC HET FN3094-S Chr2 6345001 6364000 0 0 Deletion 18999 LOC_Os02g12550 cytochrome P450, putative, expressed FN3094-S Chr2 6562001 6574000 0 0 Deletion 11999 LOC_Os02g12560 expressed protein FN3094-S Chr2 6562001 6574000 0 0 Deletion 11999 LOC_Os02g12570 pre-mRNA cleavage complex II protein Clp1, putative, expressed FN3094-S Chr2 6562001 6574000 0 0 Deletion 11999 LOC_Os02g12580 OsPP2Ac-3 - Phosphatase 2A isoform 3 belonging to family 1, expressed FN3094-S Chr2 6562001 6574000 0 0 Deletion 11999 LOC_Os02g13430 receptor-like protein kinase 5 precursor, putative, expressed FN3094-S Chr2 7169001 7188000 0 0 Deletion 18999 LOC_Os02g13440 expressed protein FN3094-S Chr2 7169001 7188000 0 0 Deletion 18999 LOC_Os02g13450 MEGL7 - Maternally expressed gene MEG family protein precursor, putative, expressed FN3094-S Chr2 7169001 7188000 0 0 Deletion 18999 LOC_Os02g13460 receptor-like protein kinase 2 precursor, putative, expressed FN3094-S Chr2 7169001 7188000 0 0 Deletion 18999 LOC_Os02g14240 hypothetical protein FN3094-S Chr2 8408001 8441000 0 0 Deletion 32999 LOC_Os02g15100 zinc finger, C3HC4 type domain containing protein, expressed FN3094-S Chr2 8408001 8441000 0 0 Deletion 32999 LOC_Os02g15110 zinc finger, C3HC4 type domain containing protein, expressed FN3094-S Chr2 8408001 8441000 0 0 Deletion 32999 LOC_Os02g15120 RING-H2 finger protein, putative, expressed FN3094-S Chr2 8408001 8441000 0 0 Deletion 32999 LOC_Os02g15130 expressed protein FN3094-S Chr2 8408001 8441000 0 0 Deletion 32999 LOC_Os02g15140 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr2 8408001 8441000 0 0 Deletion 32999 LOC_Os02g16800 expansin precursor, putative, expressed FN3094-S Chr3 11169112 Chr2 34566126 0 Translocation 0 FN3094-S Chr3 11544001 11582000 0 0 Deletion 37999 LOC_Os03g20410 aquaporin SIP2-1, putative, expressed FN3094-S Chr3 11544001 11582000 0 0 Deletion 37999 LOC_Os03g20420 alpha-N-arabinofuranosidase A, putative, expressed FN3094-S Chr3 11544001 11582000 0 0 Deletion 37999 LOC_Os03g20430 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH8, putative, expressed FN3094-S Chr3 11544001 11582000 0 0 Deletion 37999 LOC_Os03g20440 VQ domain containing protein, putative, expressed FN3094-S Chr3 12728030 12728030 0 0 Insertion 2 INTERGENIC HET FN3094-S Chr3 12973001 13005000 0 0 Deletion 31999 LOC_Os03g22580 CW-type Zinc Finger, putative, expressed FN3094-S Chr3 12973001 13005000 0 0 Deletion 31999 LOC_Os03g22590 nodulin MtN3 family protein, putative, expressed FN3094-S Chr3 12973001 13005000 0 0 Deletion 31999 LOC_Os03g25180 retrotransposon protein, putative, unclassified FN3094-S Chr3 1370001 1392000 0 0 Deletion 21999 LOC_Os03g03230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr3 1370001 1392000 0 0 Deletion 21999 LOC_Os03g03240 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr3 1370001 1392000 0 0 Deletion 21999 LOC_Os03g03250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr3 1370001 1392000 0 0 Deletion 21999 LOC_Os03g04080 expressed protein FN3094-S Chr3 14413091 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3094-S Chr3 16905173 16905205 0 0 Deletion 32 intron_variant HET FN3094-S Chr3 17159701 17159971 0 0 Inversion 270 LOC_Os03g30084 expressed protein FN3094-S Chr3 17308001 17329000 0 0 Deletion 20999 LOC_Os03g30350 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 17308001 17329000 0 0 Deletion 20999 LOC_Os03g30360 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 17308001 17329000 0 0 Deletion 20999 LOC_Os03g30370 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr3 17308001 17329000 0 0 Deletion 20999 LOC_Os03g30390 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr3 18036001 18084000 0 0 Deletion 47999 LOC_Os03g31594 jmjC domain containing protein, expressed FN3094-S Chr3 18036001 18084000 0 0 Deletion 47999 LOC_Os03g31620 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr3 18036001 18084000 0 0 Deletion 47999 LOC_Os03g31630 OsSub29 - Putative Subtilisin homologue, expressed FN3094-S Chr3 18036001 18084000 0 0 Deletion 47999 LOC_Os03g31634 expressed protein FN3094-S Chr3 18036001 18084000 0 0 Deletion 47999 LOC_Os03g31640 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 18036001 18084000 0 0 Deletion 47999 LOC_Os03g31650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr3 18036001 18084000 0 0 Deletion 47999 LOC_Os03g31660 transposon protein, putative, unclassified, expressed FN3094-S Chr3 18036001 18084000 0 0 Deletion 47999 LOC_Os03g31670 hypothetical protein FN3094-S Chr3 1867001 1903000 0 0 Deletion 35999 LOC_Os03g04100 expressed protein FN3094-S Chr3 1867001 1903000 0 0 Deletion 35999 LOC_Os03g04110 lysM domain-containing GPI-anchored protein precursor, putative, expressed FN3094-S Chr3 1867001 1903000 0 0 Deletion 35999 LOC_Os03g04120 AMP-binding enzyme, putative, expressed FN3094-S Chr3 1867001 1903000 0 0 Deletion 35999 LOC_Os03g04130 AMP-binding domain containing protein, expressed FN3094-S Chr3 1867001 1903000 0 0 Deletion 35999 LOC_Os03g04140 serine acetyltransferase protein, putative, expressed FN3094-S Chr3 1867001 1903000 0 0 Deletion 35999 LOC_Os03g04150 transposon protein, putative, Mutator sub-class, expressed FN3094-S Chr3 19002001 19050000 0 0 Deletion 47999 LOC_Os03g33230 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 19002001 19050000 0 0 Deletion 47999 LOC_Os03g33240 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 19002001 19050000 0 0 Deletion 47999 LOC_Os03g33250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr3 19002001 19050000 0 0 Deletion 47999 LOC_Os03g33260 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 19002001 19050000 0 0 Deletion 47999 LOC_Os03g33270 retrotransposon protein, putative, unclassified FN3094-S Chr3 19002001 19050000 0 0 Deletion 47999 LOC_Os03g33280 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr3 19002001 19050000 0 0 Deletion 47999 LOC_Os03g33290 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 19002001 19050000 0 0 Deletion 47999 LOC_Os03g33300 retrotransposon, putative, centromere-specific, expressed FN3094-S Chr3 19564324 19564479 0 0 Deletion 155 downstream_gene_variant HET FN3094-S Chr3 19645001 19664000 0 0 Deletion 18999 LOC_Os03g35440 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr3 19645001 19664000 0 0 Deletion 18999 LOC_Os03g35454 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 20003001 20016000 0 0 Deletion 12999 LOC_Os03g36070 retrotransposon protein, putative, unclassified FN3094-S Chr3 20003001 20016000 0 0 Deletion 12999 LOC_Os03g36239 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr3 20104001 20144000 0 0 Deletion 39999 LOC_Os03g36260 expressed protein FN3094-S Chr3 20104001 20144000 0 0 Deletion 39999 LOC_Os03g36270 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 20104001 20144000 0 0 Deletion 39999 LOC_Os03g36279 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr3 20104001 20144000 0 0 Deletion 39999 LOC_Os03g36290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr3 20104001 20144000 0 0 Deletion 39999 LOC_Os03g36300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr3 20104001 20144000 0 0 Deletion 39999 LOC_Os03g36310 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 20104001 20144000 0 0 Deletion 39999 LOC_Os03g36570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr3 20277001 20315000 0 0 Deletion 37999 LOC_Os03g36580 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr3 20277001 20315000 0 0 Deletion 37999 LOC_Os03g36590 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 20277001 20315000 0 0 Deletion 37999 LOC_Os03g36600 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 20277001 20315000 0 0 Deletion 37999 LOC_Os03g36610 retrotransposon protein, putative, unclassified FN3094-S Chr3 20277001 20315000 0 0 Deletion 37999 LOC_Os03g36620 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 20277001 20315000 0 0 Deletion 37999 LOC_Os03g36630 expressed protein FN3094-S Chr3 20277001 20315000 0 0 Deletion 37999 LOC_Os03g36684 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 20342001 20372000 0 0 Deletion 29999 LOC_Os03g36684 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 20342001 20372000 0 0 Deletion 29999 LOC_Os03g36700 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 20342001 20372000 0 0 Deletion 29999 LOC_Os03g36710 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 20342001 20372000 0 0 Deletion 29999 LOC_Os03g36720 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr3 20342001 20372000 0 0 Deletion 29999 LOC_Os03g36730 OST3/OST6 family protein, putative, expressed FN3094-S Chr3 20700001 20740000 0 0 Deletion 39999 LOC_Os03g37377 retrotransposon protein, putative, unclassified FN3094-S Chr3 20700001 20740000 0 0 Deletion 39999 LOC_Os03g37394 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 20700001 20740000 0 0 Deletion 39999 LOC_Os03g37411 MATE efflux family protein, putative, expressed FN3094-S Chr3 20700001 20740000 0 0 Deletion 39999 LOC_Os03g37830 potassium transporter, putative, expressed FN3094-S Chr3 21130001 21140000 0 0 Deletion 9999 LOC_Os03g38076 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr3 21130001 21140000 0 0 Deletion 9999 LOC_Os03g38082 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr3 21130001 21140000 0 0 Deletion 9999 LOC_Os03g38250 disease resistance RPP13-like protein 1, putative, expressed FN3094-S Chr3 21486001 21532000 0 0 Deletion 45999 LOC_Os03g38720 proteasome maturation factor UMP1 family protein, expressed FN3094-S Chr3 21486001 21532000 0 0 Deletion 45999 LOC_Os03g38730 peroxisomal membrane protein, putative, expressed FN3094-S Chr3 21486001 21532000 0 0 Deletion 45999 LOC_Os03g38740 Dicer, putative, expressed FN3094-S Chr3 21486001 21532000 0 0 Deletion 45999 LOC_Os03g38745 serine/arginine repetitive matrix protein 1, putative, expressed FN3094-S Chr3 21486001 21532000 0 0 Deletion 45999 LOC_Os03g38750 expressed protein FN3094-S Chr3 21486001 21532000 0 0 Deletion 45999 LOC_Os03g38764 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 21486001 21532000 0 0 Deletion 45999 LOC_Os03g39460 retrotransposon, putative, centromere-specific FN3094-S Chr3 22346001 22381000 0 0 Deletion 34999 LOC_Os03g40194 disease resistance RPP13-like protein 1, putative, expressed FN3094-S Chr3 22346001 22381000 0 0 Deletion 34999 LOC_Os03g40210 expressed protein FN3094-S Chr3 22346001 22381000 0 0 Deletion 34999 LOC_Os03g40220 retrotransposon protein, putative, unclassified FN3094-S Chr3 22346001 22381000 0 0 Deletion 34999 LOC_Os03g40230 expressed protein FN3094-S Chr3 22346001 22381000 0 0 Deletion 34999 LOC_Os03g40240 hypothetical protein FN3094-S Chr3 22346001 22381000 0 0 Deletion 34999 LOC_Os03g40250 Leucine Rich Repeat family protein, expressed FN3094-S Chr3 22346001 22381000 0 0 Deletion 34999 LOC_Os03g40260 Regulator of chromosome condensation domain containing protein, expressed FN3094-S Chr3 22726001 22760000 0 0 Deletion 33999 LOC_Os03g40880 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 22726001 22760000 0 0 Deletion 33999 LOC_Os03g40900 expressed protein FN3094-S Chr3 22726001 22760000 0 0 Deletion 33999 LOC_Os03g40910 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 22726001 22760000 0 0 Deletion 33999 LOC_Os03g40920 expressed protein FN3094-S Chr3 22726001 22760000 0 0 Deletion 33999 LOC_Os03g40930 expressed protein FN3094-S Chr3 22726001 22760000 0 0 Deletion 33999 LOC_Os03g40950 expressed protein FN3094-S Chr3 22726001 22760000 0 0 Deletion 33999 LOC_Os03g41640 GRF zinc finger family protein, expressed FN3094-S Chr3 23302001 23327000 0 0 Deletion 24999 LOC_Os03g41960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr3 23302001 23327000 0 0 Deletion 24999 LOC_Os03g41970 retrotransposon protein, putative, unclassified FN3094-S Chr3 23302001 23327000 0 0 Deletion 24999 LOC_Os03g41980 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 23951001 23966000 0 0 Deletion 14999 LOC_Os03g42954 conserved hypothetical protein FN3094-S Chr3 23951001 23966000 0 0 Deletion 14999 LOC_Os03g42960 expressed protein FN3094-S Chr3 23951001 23966000 0 0 Deletion 14999 LOC_Os03g42970 transposon protein, putative, unclassified, expressed FN3094-S Chr3 23951001 23966000 0 0 Deletion 14999 LOC_Os03g43160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr3 24080001 24110000 0 0 Deletion 29999 LOC_Os03g43160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr3 24080001 24110000 0 0 Deletion 29999 LOC_Os03g43169 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr3 24080001 24110000 0 0 Deletion 29999 LOC_Os03g43180 transposon protein, putative, unclassified, expressed FN3094-S Chr3 24080001 24110000 0 0 Deletion 29999 LOC_Os03g43190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr3 24080001 24110000 0 0 Deletion 29999 LOC_Os03g43200 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 24080001 24110000 0 0 Deletion 29999 LOC_Os03g43210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr3 24080001 24110000 0 0 Deletion 29999 LOC_Os03g43220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr3 24080001 24110000 0 0 Deletion 29999 LOC_Os03g43230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr3 2425653 2425653 0 0 Insertion 1 downstream_gene_variant HET FN3094-S Chr3 24566015 24566547 0 0 Inversion 532 FN3094-S Chr3 27665001 27678000 0 0 Deletion 12999 LOC_Os03g48550 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr3 27665001 27678000 0 0 Deletion 12999 LOC_Os03g49110 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 2793001 2820000 0 0 Deletion 26999 LOC_Os03g05590 AP2 domain containing protein, expressed FN3094-S Chr3 2793001 2820000 0 0 Deletion 26999 LOC_Os03g05600 hypothetical protein FN3094-S Chr3 2793001 2820000 0 0 Deletion 26999 LOC_Os03g05610 inorganic phosphate transporter, putative, expressed FN3094-S Chr3 2793001 2820000 0 0 Deletion 26999 LOC_Os03g05620 inorganic phosphate transporter, putative, expressed FN3094-S Chr3 2793001 2820000 0 0 Deletion 26999 LOC_Os03g05630 expressed protein FN3094-S Chr3 2793001 2820000 0 0 Deletion 26999 LOC_Os03g05640 inorganic phosphate transporter, putative, expressed FN3094-S Chr3 2793001 2820000 0 0 Deletion 26999 LOC_Os03g05650 expressed protein FN3094-S Chr3 2793001 2820000 0 0 Deletion 26999 LOC_Os03g05790 transposon protein, putative, unclassified, expressed FN3094-S Chr3 28039001 28059000 0 0 Deletion 19999 LOC_Os03g49240 expressed protein FN3094-S Chr3 28039001 28059000 0 0 Deletion 19999 LOC_Os03g49250 OsFBO16 - F-box and other domain containing protein, expressed FN3094-S Chr3 28039001 28059000 0 0 Deletion 19999 LOC_Os03g49260 lipoxygenase, putative, expressed FN3094-S Chr3 28039001 28059000 0 0 Deletion 19999 LOC_Os03g49270 THION36 - Plant thionin family protein precursor, expressed FN3094-S Chr3 28039001 28059000 0 0 Deletion 19999 LOC_Os03g49280 THION37 - Plant thionin family protein precursor, putative, expressed FN3094-S Chr3 28224001 28243000 0 0 Deletion 18999 LOC_Os03g49560 expressed protein FN3094-S Chr3 28224001 28243000 0 0 Deletion 18999 LOC_Os03g49570 domain of unknown function, DUF250 domain containing protein, expressed FN3094-S Chr3 28224001 28243000 0 0 Deletion 18999 LOC_Os03g49580 eukaryotic peptide chain release factor subunit 1-1, putative, expressed FN3094-S Chr3 28224001 28243000 0 0 Deletion 18999 LOC_Os03g49590 expressed protein FN3094-S Chr3 28224001 28243000 0 0 Deletion 18999 LOC_Os03g49600 Os3bglu7 - beta-glucosidase, exo-beta-glucanse, expressed FN3094-S Chr3 28269001 28284000 0 0 Deletion 14999 LOC_Os03g49650 retrotransposon protein, putative, Ty1-copia subclass FN3094-S Chr3 28269001 28284000 0 0 Deletion 14999 LOC_Os03g49660 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr3 28269001 28284000 0 0 Deletion 14999 LOC_Os03g50340 coatomer alpha subunit, putative, expressed FN3094-S Chr3 28724001 28734000 0 0 Deletion 9999 LOC_Os03g50350 coatomer alpha subunit, putative, expressed FN3094-S Chr3 28724001 28734000 0 0 Deletion 9999 LOC_Os03g51140 HEAT repeat family protein, putative, expressed FN3094-S Chr3 29245001 29278000 0 0 Deletion 32999 LOC_Os03g51140 HEAT repeat family protein, putative, expressed FN3094-S Chr3 29245001 29278000 0 0 Deletion 32999 LOC_Os03g51150 expressed protein FN3094-S Chr3 29245001 29278000 0 0 Deletion 32999 LOC_Os03g51160 fb27, putative, expressed FN3094-S Chr3 30117001 30175000 0 0 Deletion 57999 LOC_Os03g52490 nucleic acid binding protein, putative, expressed FN3094-S Chr3 30117001 30175000 0 0 Deletion 57999 LOC_Os03g52500 expressed protein FN3094-S Chr3 30117001 30175000 0 0 Deletion 57999 LOC_Os03g52510 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 30117001 30175000 0 0 Deletion 57999 LOC_Os03g52520 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 30117001 30175000 0 0 Deletion 57999 LOC_Os03g52530 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr3 30117001 30175000 0 0 Deletion 57999 LOC_Os03g52540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr3 30117001 30175000 0 0 Deletion 57999 LOC_Os03g52550 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 30117001 30175000 0 0 Deletion 57999 LOC_Os03g52560 glycosyl hydrolases, putative, expressed FN3094-S Chr3 30117001 30175000 0 0 Deletion 57999 LOC_Os03g52570 glycerol-3-phosphate acyltransferase, putative, expressed FN3094-S Chr3 30117001 30175000 0 0 Deletion 57999 LOC_Os03g52594 CCR4-NOT transcription factor, putative, expressed FN3094-S Chr3 30954001 30973000 0 0 Deletion 18999 LOC_Os03g53990 expressed protein FN3094-S Chr3 30954001 30973000 0 0 Deletion 18999 LOC_Os03g54000 oligopeptide transporter, putative, expressed FN3094-S Chr3 30954001 30973000 0 0 Deletion 18999 LOC_Os03g54010 retrotransposon protein, putative, unclassified FN3094-S Chr3 30954001 30973000 0 0 Deletion 18999 LOC_Os03g54020 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr3 32217001 32239000 0 0 Deletion 21999 LOC_Os03g56560 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 32217001 32239000 0 0 Deletion 21999 LOC_Os03g56566 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 32217001 32239000 0 0 Deletion 21999 LOC_Os03g56572 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr3 32217001 32239000 0 0 Deletion 21999 LOC_Os03g56580 no apical meristem protein, putative, expressed FN3094-S Chr3 32217001 32239000 0 0 Deletion 21999 LOC_Os03g56590 expressed protein FN3094-S Chr3 33137936 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3094-S Chr3 34361001 34386000 0 0 Deletion 24999 LOC_Os03g60430 AP2 domain containing protein, expressed FN3094-S Chr3 34361001 34386000 0 0 Deletion 24999 LOC_Os03g60440 expressed protein FN3094-S Chr3 34361001 34386000 0 0 Deletion 24999 LOC_Os03g60449 hypothetical protein FN3094-S Chr3 34361001 34386000 0 0 Deletion 24999 LOC_Os03g60460 aminopeptidase, putative, expressed FN3094-S Chr3 34361001 34386000 0 0 Deletion 24999 LOC_Os03g60470 glycine-rich protein A3, putative, expressed FN3094-S Chr3 34361001 34386000 0 0 Deletion 24999 LOC_Os03g60480 heavy metal-associated domain containing protein, expressed FN3094-S Chr3 34492001 34531000 0 0 Deletion 38999 LOC_Os03g60690 pentatricopeptide, putative, expressed FN3094-S Chr3 34492001 34531000 0 0 Deletion 38999 LOC_Os03g60700 dolichyl-phosphate beta-glycosyltransferase, putative, expressed FN3094-S Chr3 34492001 34531000 0 0 Deletion 38999 LOC_Os03g60710 protein kinase domain containing protein, expressed FN3094-S Chr3 34492001 34531000 0 0 Deletion 38999 LOC_Os03g60720 expansin precursor, putative, expressed FN3094-S Chr3 34492001 34531000 0 0 Deletion 38999 LOC_Os03g60730 transposon protein, putative, unclassified, expressed FN3094-S Chr3 34492001 34531000 0 0 Deletion 38999 LOC_Os03g60740 expressed protein FN3094-S Chr3 34492001 34531000 0 0 Deletion 38999 LOC_Os03g60750 ribosomal RNA large subunit methyltransferase J, putative, expressed FN3094-S Chr3 34492001 34531000 0 0 Deletion 38999 LOC_Os03g61050 FG-GAP repeat-containing protein, putative, expressed FN3094-S Chr3 35191001 35211000 0 0 Deletion 19999 LOC_Os03g62120 heat shock protein DnaJ, putative, expressed FN3094-S Chr3 35191001 35211000 0 0 Deletion 19999 LOC_Os03g62130 heat shock protein DnaJ, putative, expressed FN3094-S Chr3 35191001 35211000 0 0 Deletion 19999 LOC_Os03g62140 heat shock protein DnaJ, putative, expressed FN3094-S Chr3 35191001 35211000 0 0 Deletion 19999 LOC_Os03g62150 heat shock protein DnaJ, putative, expressed FN3094-S Chr3 35191001 35211000 0 0 Deletion 19999 LOC_Os03g62160 expressed protein FN3094-S Chr3 35191001 35211000 0 0 Deletion 19999 LOC_Os03g63820 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 400388 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3094-S Chr3 7492001 7518000 0 0 Deletion 25999 LOC_Os03g13840 senescence-associated protein, putative, expressed FN3094-S Chr3 7492001 7518000 0 0 Deletion 25999 LOC_Os03g13850 cell cycle checkpoint protein RAD17, putative, expressed FN3094-S Chr3 7492001 7518000 0 0 Deletion 25999 LOC_Os03g13860 ras-related protein, putative, expressed FN3094-S Chr3 7492001 7518000 0 0 Deletion 25999 LOC_Os03g14410 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 7836001 7868000 0 0 Deletion 31999 LOC_Os03g14410 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr3 7836001 7868000 0 0 Deletion 31999 LOC_Os03g14420 cytochrome P450, putative, expressed FN3094-S Chr3 7836001 7868000 0 0 Deletion 31999 LOC_Os03g14430 expressed protein FN3094-S Chr3 7836001 7868000 0 0 Deletion 31999 LOC_Os03g14440 expressed protein FN3094-S Chr3 7836001 7868000 0 0 Deletion 31999 LOC_Os03g14450 enolase, putative, expressed FN3094-S Chr3 7836001 7868000 0 0 Deletion 31999 LOC_Os03g14460 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr3 7836001 7868000 0 0 Deletion 31999 LOC_Os03g14470 transposon protein, putative, CACTA, En/Spm sub-class FN3094-S Chr3 7836001 7868000 0 0 Deletion 31999 LOC_Os03g14480 hypothetical protein FN3094-S Chr3 7836001 7868000 0 0 Deletion 31999 LOC_Os03g14490 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr3 8777001 8790000 0 0 Deletion 12999 LOC_Os03g15910 membrane protein, putative, expressed FN3094-S Chr3 8777001 8790000 0 0 Deletion 12999 LOC_Os03g15920 expressed protein FN3094-S Chr3 8777001 8790000 0 0 Deletion 12999 LOC_Os03g16900 rab GDP dissociation inhibitor alpha, putative, expressed FN3094-S Chr3 9390001 9407000 0 0 Deletion 16999 LOC_Os03g16910 SLT1 protein, putative, expressed FN3094-S Chr3 9390001 9407000 0 0 Deletion 16999 LOC_Os03g17580 ribosomal protein L10, putative, expressed FN3094-S Chr4 10592001 10615000 0 0 Deletion 22999 LOC_Os04g19100 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr4 10592001 10615000 0 0 Deletion 22999 LOC_Os04g19114 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr4 10592001 10615000 0 0 Deletion 22999 LOC_Os04g19170 hypothetical protein FN3094-S Chr4 10751001 10779000 0 0 Deletion 27999 LOC_Os04g19330 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr4 10751001 10779000 0 0 Deletion 27999 LOC_Os04g19340 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr4 10751001 10779000 0 0 Deletion 27999 LOC_Os04g19350 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr4 10751001 10779000 0 0 Deletion 27999 LOC_Os04g19360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr4 11004137 11004138 0 0 Deletion 1 downstream_gene_variant HET FN3094-S Chr4 11116001 11139000 0 0 Deletion 22999 LOC_Os04g19950 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr4 11116001 11139000 0 0 Deletion 22999 LOC_Os04g19960 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr4 11116001 11139000 0 0 Deletion 22999 LOC_Os04g19970 retrotransposon, putative, centromere-specific FN3094-S Chr4 11116001 11139000 0 0 Deletion 22999 LOC_Os04g19980 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr4 11116001 11139000 0 0 Deletion 22999 LOC_Os04g20260 UDP-glucoronosyl and UDP-glucosyl transferase, putative, expressed FN3094-S Chr4 11463001 11546000 0 0 Deletion 82999 LOC_Os04g20520 expressed protein FN3094-S Chr4 11463001 11546000 0 0 Deletion 82999 LOC_Os04g20540 anthocyanidin 3-O-glucosyltransferase, putative, expressed FN3094-S Chr4 11463001 11546000 0 0 Deletion 82999 LOC_Os04g20550 expressed protein FN3094-S Chr4 11463001 11546000 0 0 Deletion 82999 LOC_Os04g20560 methyl-CpG binding domain containing protein, expressed FN3094-S Chr4 11463001 11546000 0 0 Deletion 82999 LOC_Os04g20570 retrotransposon protein, putative, unclassified FN3094-S Chr4 11463001 11546000 0 0 Deletion 82999 LOC_Os04g20590 YL1 nuclear protein C-terminal domain containing protein, expressed FN3094-S Chr4 11463001 11546000 0 0 Deletion 82999 LOC_Os04g20600 hypothetical protein FN3094-S Chr4 11463001 11546000 0 0 Deletion 82999 LOC_Os04g20610 zinc knuckle domain containing protein, expressed FN3094-S Chr4 11463001 11546000 0 0 Deletion 82999 LOC_Os04g20620 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr4 11463001 11546000 0 0 Deletion 82999 LOC_Os04g20630 nucleic acid binding protein, putative FN3094-S Chr4 11463001 11546000 0 0 Deletion 82999 LOC_Os04g20690 expressed protein FN3094-S Chr4 12065001 12096000 0 0 Deletion 30999 LOC_Os04g21370 expressed protein FN3094-S Chr4 12065001 12096000 0 0 Deletion 30999 LOC_Os04g21380 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr4 12065001 12096000 0 0 Deletion 30999 LOC_Os04g21390 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr4 12065001 12096000 0 0 Deletion 30999 LOC_Os04g21400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr4 12303001 12323000 0 0 Deletion 19999 LOC_Os04g21750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr4 12303001 12323000 0 0 Deletion 19999 LOC_Os04g21760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr4 12303001 12323000 0 0 Deletion 19999 LOC_Os04g21770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr4 13123001 13160000 0 0 Deletion 36999 LOC_Os04g23100 expressed protein FN3094-S Chr4 13123001 13160000 0 0 Deletion 36999 LOC_Os04g23120 hypothetical protein FN3094-S Chr4 13123001 13160000 0 0 Deletion 36999 LOC_Os04g23130 expressed protein FN3094-S Chr4 13123001 13160000 0 0 Deletion 36999 LOC_Os04g23140 expressed protein FN3094-S Chr4 14198609 14198610 0 0 Deletion 1 frameshift_variant HET LOC_Os04g24730 transposon protein, putative, unclassified, expressed FN3094-S Chr4 14240001 14256000 0 0 Deletion 15999 LOC_Os04g24800 OsMADS82 - MADS-box family gene with M-gamma type-box, expressed FN3094-S Chr4 14240001 14256000 0 0 Deletion 15999 LOC_Os04g24804 expressed protein FN3094-S Chr4 1482001 1500000 0 0 Deletion 17999 LOC_Os04g03460 retrotransposon protein, putative, unclassified FN3094-S Chr4 1482001 1500000 0 0 Deletion 17999 LOC_Os04g03470 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr4 1482001 1500000 0 0 Deletion 17999 LOC_Os04g03630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr4 15051001 15082000 0 0 Deletion 30999 LOC_Os04g25890 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr4 15051001 15082000 0 0 Deletion 30999 LOC_Os04g25900 go35 NBS-LRR, putative, expressed FN3094-S Chr4 15051001 15082000 0 0 Deletion 30999 LOC_Os04g25910 hypothetical protein FN3094-S Chr4 15051001 15082000 0 0 Deletion 30999 LOC_Os04g25920 OsMADS85 - MADS-box family gene with M-gamma type-box, expressed FN3094-S Chr4 1663001 1679000 0 0 Deletion 15999 LOC_Os04g03910 expressed protein FN3094-S Chr4 1792001 1808000 0 0 Deletion 15999 LOC_Os04g03930 expressed protein FN3094-S Chr4 1792001 1808000 0 0 Deletion 15999 LOC_Os04g03940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr4 1792001 1808000 0 0 Deletion 15999 LOC_Os04g03950 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr4 1792001 1808000 0 0 Deletion 15999 LOC_Os04g03960 hypothetical protein FN3094-S Chr4 1792001 1808000 0 0 Deletion 15999 LOC_Os04g04080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr4 1886001 1901000 0 0 Deletion 14999 LOC_Os04g04120 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr4 1886001 1901000 0 0 Deletion 14999 LOC_Os04g04160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr4 1944001 1979000 0 0 Deletion 34999 LOC_Os04g04190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr4 1944001 1979000 0 0 Deletion 34999 LOC_Os04g04200 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr4 1944001 1979000 0 0 Deletion 34999 LOC_Os04g04210 expressed protein FN3094-S Chr4 1944001 1979000 0 0 Deletion 34999 LOC_Os04g04220 transposon protein, putative, unclassified, expressed FN3094-S Chr4 1944001 1979000 0 0 Deletion 34999 LOC_Os04g04230 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed FN3094-S Chr4 1944001 1979000 0 0 Deletion 34999 LOC_Os04g04240 sterol 3-beta-glucosyltransferase, putative, expressed FN3094-S Chr4 1944001 1979000 0 0 Deletion 34999 LOC_Os04g05960 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr4 19544565 19690829 0 0 Inversion 146264 LOC_Os04g32670 exostosin family domain containing protein, expressed FN3094-S Chr4 19544579 19690832 0 0 Inversion 146253 LOC_Os04g32670 exostosin family domain containing protein, expressed FN3094-S Chr4 22568001 22589000 0 0 Deletion 20999 LOC_Os04g37960 synaptonemal complex protein 2, putative, expressed FN3094-S Chr4 22568001 22589000 0 0 Deletion 20999 LOC_Os04g38980 pentatricopeptide, putative, expressed FN3094-S Chr4 23207001 23233000 0 0 Deletion 25999 LOC_Os04g39070 OsFBX139 - F-box domain containing protein, expressed FN3094-S Chr4 23207001 23233000 0 0 Deletion 25999 LOC_Os04g39080 OsFBX140 - F-box domain containing protein, expressed FN3094-S Chr4 23207001 23233000 0 0 Deletion 25999 LOC_Os04g39090 SAM domain containing protein, putative, expressed FN3094-S Chr4 23207001 23233000 0 0 Deletion 25999 LOC_Os04g40770 OsFBX144 - F-box domain containing protein, expressed FN3094-S Chr4 25701001 25740000 0 0 Deletion 38999 LOC_Os04g43420 PTAC5, putative, expressed FN3094-S Chr4 25701001 25740000 0 0 Deletion 38999 LOC_Os04g43430 pentatricopeptide, putative, expressed FN3094-S Chr4 25701001 25740000 0 0 Deletion 38999 LOC_Os04g43440 NB-ARC/LRR disease resistance protein, putative, expressed FN3094-S Chr4 25701001 25740000 0 0 Deletion 38999 LOC_Os04g43450 expressed protein FN3094-S Chr4 25701001 25740000 0 0 Deletion 38999 LOC_Os04g43464 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr4 25701001 25740000 0 0 Deletion 38999 LOC_Os04g43480 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr4 25701001 25740000 0 0 Deletion 38999 LOC_Os04g43490 CK1_CaseinKinase_1.7 - CK1 includes the casein kinase 1 kinases, expressed FN3094-S Chr4 25701001 25740000 0 0 Deletion 38999 LOC_Os04g43500 transposon protein, putative, unclassified FN3094-S Chr4 25701001 25740000 0 0 Deletion 38999 LOC_Os04g43890 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr4 26079001 26107000 0 0 Deletion 27999 LOC_Os04g44010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr4 26079001 26107000 0 0 Deletion 27999 LOC_Os04g44020 expressed protein FN3094-S Chr4 26079001 26107000 0 0 Deletion 27999 LOC_Os04g44030 PPR repeat domain containing protein, putative, expressed FN3094-S Chr4 26079001 26107000 0 0 Deletion 27999 LOC_Os04g44050 expressed protein FN3094-S Chr4 26079001 26107000 0 0 Deletion 27999 LOC_Os04g44060 aquaporin protein, putative, expressed FN3094-S Chr4 26079001 26107000 0 0 Deletion 27999 LOC_Os04g44070 expressed protein FN3094-S Chr4 26079001 26107000 0 0 Deletion 27999 LOC_Os04g44080 expressed protein FN3094-S Chr4 26079001 26107000 0 0 Deletion 27999 LOC_Os04g45340 expressed protein FN3094-S Chr4 27090703 27090704 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os04g45770 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr4 27599001 27621000 0 0 Deletion 21999 LOC_Os04g46560 lactate/malate dehydrogenase, putative, expressed FN3094-S Chr4 27599001 27621000 0 0 Deletion 21999 LOC_Os04g46570 growth regulator related protein, putative, expressed FN3094-S Chr4 27599001 27621000 0 0 Deletion 21999 LOC_Os04g46580 OsSPL7 - SBP-box gene family member, expressed FN3094-S Chr4 27599001 27621000 0 0 Deletion 21999 LOC_Os04g46700 ABC family transporter: toluene tolerance, putative, expressed FN3094-S Chr4 29409001 29440000 0 0 Deletion 30999 LOC_Os04g49270 tRNA-splicing endonuclease positive effector-related, putative, expressed FN3094-S Chr4 29409001 29440000 0 0 Deletion 30999 LOC_Os04g49280 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr4 29409001 29440000 0 0 Deletion 30999 LOC_Os04g49290 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr4 29409001 29440000 0 0 Deletion 30999 LOC_Os04g49300 retrotransposon protein, putative, LINE subclass, expressed FN3094-S Chr4 29409001 29440000 0 0 Deletion 30999 LOC_Os04g49310 tRNA-splicing endonuclease positive effector-related, putative, expressed FN3094-S Chr4 29409001 29440000 0 0 Deletion 30999 LOC_Os04g49320 tRNA-splicing endonuclease positive effector-related, putative, expressed FN3094-S Chr4 30060001 30083000 0 0 Deletion 22999 LOC_Os04g50830 retrotransposon protein, putative, LINE subclass, expressed FN3094-S Chr4 30060001 30083000 0 0 Deletion 22999 LOC_Os04g50840 expressed protein FN3094-S Chr4 30060001 30083000 0 0 Deletion 22999 LOC_Os04g50850 aspartyl protease family, putative, expressed FN3094-S Chr4 30060001 30083000 0 0 Deletion 22999 LOC_Os04g50860 expressed protein FN3094-S Chr4 30060001 30083000 0 0 Deletion 22999 LOC_Os04g50864 expressed protein FN3094-S Chr4 30060001 30083000 0 0 Deletion 22999 LOC_Os04g50990 L11 domain containing ribosomal protein, putative, expressed FN3094-S Chr4 30183001 30222000 0 0 Deletion 38999 LOC_Os04g51009 OsWAK52 - OsWAK short gene, expressed FN3094-S Chr4 30183001 30222000 0 0 Deletion 38999 LOC_Os04g51020 hypothetical protein FN3094-S Chr4 30183001 30222000 0 0 Deletion 38999 LOC_Os04g51030 wall-associated kinase 1, putative, expressed FN3094-S Chr4 30183001 30222000 0 0 Deletion 38999 LOC_Os04g51040 OsWAK50 - OsWAK receptor-like protein kinase, expressed FN3094-S Chr4 30183001 30222000 0 0 Deletion 38999 LOC_Os04g51050 OsWAK53b - OsWAK receptor-like protein kinase, expressed FN3094-S Chr4 30183001 30222000 0 0 Deletion 38999 LOC_Os04g51840 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr4 3088001 3151000 0 0 Deletion 62999 LOC_Os04g05970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr4 3088001 3151000 0 0 Deletion 62999 LOC_Os04g05980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr4 3088001 3151000 0 0 Deletion 62999 LOC_Os04g05990 transposon protein, putative, CACTA, En/Spm sub-class FN3094-S Chr4 3088001 3151000 0 0 Deletion 62999 LOC_Os04g06000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr4 3088001 3151000 0 0 Deletion 62999 LOC_Os04g06010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr4 3088001 3151000 0 0 Deletion 62999 LOC_Os04g06020 transposon protein, putative, CACTA, En/Spm sub-class FN3094-S Chr4 3088001 3151000 0 0 Deletion 62999 LOC_Os04g06030 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr4 3088001 3151000 0 0 Deletion 62999 LOC_Os04g06050 expressed protein FN3094-S Chr4 3088001 3151000 0 0 Deletion 62999 LOC_Os04g06070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr4 31785001 31807000 0 0 Deletion 21999 LOC_Os04g53380 expressed protein FN3094-S Chr4 31785001 31807000 0 0 Deletion 21999 LOC_Os04g53390 MrBTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH-related domain, expressed FN3094-S Chr4 31785001 31807000 0 0 Deletion 21999 LOC_Os04g54120 serine/threonine-protein kinase receptor precursor, putative, expressed FN3094-S Chr4 33982001 34040000 0 0 Deletion 57999 LOC_Os04g57010 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed FN3094-S Chr4 33982001 34040000 0 0 Deletion 57999 LOC_Os04g57020 expressed protein FN3094-S Chr4 33982001 34040000 0 0 Deletion 57999 LOC_Os04g57030 VQ domain containing protein, putative, expressed FN3094-S Chr4 33982001 34040000 0 0 Deletion 57999 LOC_Os04g57040 expressed protein FN3094-S Chr4 33982001 34040000 0 0 Deletion 57999 LOC_Os04g57050 jasmonate O-methyltransferase, putative, expressed FN3094-S Chr4 33982001 34040000 0 0 Deletion 57999 LOC_Os04g57060 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr4 33982001 34040000 0 0 Deletion 57999 LOC_Os04g57070 jasmonate O-methyltransferase, putative, expressed FN3094-S Chr4 33982001 34040000 0 0 Deletion 57999 LOC_Os04g57080 jasmonate O-methyltransferase, putative, expressed FN3094-S Chr4 33982001 34040000 0 0 Deletion 57999 LOC_Os04g57090 jasmonate O-methyltransferase, putative, expressed FN3094-S Chr4 33982001 34040000 0 0 Deletion 57999 LOC_Os04g57100 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr4 33982001 34040000 0 0 Deletion 57999 LOC_Os04g57110 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr4 33982001 34040000 0 0 Deletion 57999 LOC_Os04g57130 dirigent-like protein pDIR17, putative, expressed FN3094-S Chr4 33982001 34040000 0 0 Deletion 57999 LOC_Os04g57140 kinesin motor domain containing protein, putative, expressed FN3094-S Chr4 33982001 34040000 0 0 Deletion 57999 LOC_Os04g57880 heat shock protein DnaJ, putative, expressed FN3094-S Chr4 4982001 5012000 0 0 Deletion 29999 LOC_Os04g09370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr4 4982001 5012000 0 0 Deletion 29999 LOC_Os04g09380 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr4 4982001 5012000 0 0 Deletion 29999 LOC_Os04g09390 HEV3 - Hevein family protein precursor, expressed FN3094-S Chr4 4982001 5012000 0 0 Deletion 29999 LOC_Os04g09654 O-methyltransferase, putative, expressed FN3094-S Chr4 5190001 5211000 0 0 Deletion 20999 LOC_Os04g09680 caffeic acid 3-O-methyltransferase, putative, expressed FN3094-S Chr4 5190001 5211000 0 0 Deletion 20999 LOC_Os04g09690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr4 5190001 5211000 0 0 Deletion 20999 LOC_Os04g09700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr4 5190001 5211000 0 0 Deletion 20999 LOC_Os04g09710 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr4 5190001 5211000 0 0 Deletion 20999 LOC_Os04g09720 OsSCP22 - Putative Serine Carboxypeptidase homologue, expressed FN3094-S Chr4 5190001 5211000 0 0 Deletion 20999 LOC_Os04g10170 hypothetical protein FN3094-S Chr4 6487001 6496000 0 0 Deletion 8999 LOC_Os04g11900 expressed protein FN3094-S Chr4 6526001 6554000 0 0 Deletion 27999 LOC_Os04g11910 transposon protein, putative, unclassified, expressed FN3094-S Chr4 6526001 6554000 0 0 Deletion 27999 LOC_Os04g11930 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr4 6526001 6554000 0 0 Deletion 27999 LOC_Os04g11940 conserved hypothetical protein FN3094-S Chr4 6526001 6554000 0 0 Deletion 27999 LOC_Os04g11950 transposon protein, putative, CACTA, En/Spm sub-class FN3094-S Chr4 7971001 7994000 0 0 Deletion 22999 LOC_Os04g14220 disease resistance protein RPM1, putative, expressed FN3094-S Chr4 7971001 7994000 0 0 Deletion 22999 LOC_Os04g14240 expressed protein FN3094-S Chr4 7971001 7994000 0 0 Deletion 22999 LOC_Os04g14250 expressed protein FN3094-S Chr4 7971001 7994000 0 0 Deletion 22999 LOC_Os04g14260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr4 8768001 8815000 0 0 Deletion 46999 LOC_Os04g16150 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr4 8768001 8815000 0 0 Deletion 46999 LOC_Os04g16160 expressed protein FN3094-S Chr4 8768001 8815000 0 0 Deletion 46999 LOC_Os04g16170 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr4 8768001 8815000 0 0 Deletion 46999 LOC_Os04g16180 retrotransposon protein, putative, unclassified FN3094-S Chr4 8768001 8815000 0 0 Deletion 46999 LOC_Os04g16190 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr4 8768001 8815000 0 0 Deletion 46999 LOC_Os04g16200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr4 8768001 8815000 0 0 Deletion 46999 LOC_Os04g16220 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr4 9068001 9081000 0 0 Deletion 12999 LOC_Os04g16680 fructose-1,6-bisphosphatase, putative, expressed FN3094-S Chr4 9068001 9081000 0 0 Deletion 12999 LOC_Os04g17330 hypothetical protein FN3094-S Chr4 9495001 9518000 0 0 Deletion 22999 LOC_Os04g17340 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr4 9495001 9518000 0 0 Deletion 22999 LOC_Os04g17350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr4 9495001 9518000 0 0 Deletion 22999 LOC_Os04g17360 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr4 9495001 9518000 0 0 Deletion 22999 LOC_Os04g17370 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr4 9495001 9518000 0 0 Deletion 22999 LOC_Os04g17380 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr4 9495001 9518000 0 0 Deletion 22999 LOC_Os04g17390 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr4 9988432 9988432 0 0 Insertion 1 upstream_gene_variant HET FN3094-S Chr5 1028001 1071000 0 0 Deletion 42999 LOC_Os05g02850 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr5 1028001 1071000 0 0 Deletion 42999 LOC_Os05g02860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr5 1028001 1071000 0 0 Deletion 42999 LOC_Os05g02870 white-brown complex homolog protein, putative, expressed FN3094-S Chr5 1028001 1071000 0 0 Deletion 42999 LOC_Os05g02880 splicing factor, arginine/serine-rich 7, putative, expressed FN3094-S Chr5 1028001 1071000 0 0 Deletion 42999 LOC_Os05g02890 white-brown complex homolog protein 16, putative, expressed FN3094-S Chr5 1028001 1071000 0 0 Deletion 42999 LOC_Os05g02900 expressed protein FN3094-S Chr5 1028001 1071000 0 0 Deletion 42999 LOC_Os05g02920 expressed protein FN3094-S Chr5 10327001 10356000 0 0 Deletion 28999 LOC_Os05g17970 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr5 10327001 10356000 0 0 Deletion 28999 LOC_Os05g17980 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr5 10327001 10356000 0 0 Deletion 28999 LOC_Os05g17990 expressed protein FN3094-S Chr5 10327001 10356000 0 0 Deletion 28999 LOC_Os05g18000 retrotransposon protein, putative, LINE subclass, expressed FN3094-S Chr5 10327001 10356000 0 0 Deletion 28999 LOC_Os05g18040 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr5 10962001 11027000 0 0 Deletion 64999 LOC_Os05g18890 transposon protein, putative, unclassified FN3094-S Chr5 10962001 11027000 0 0 Deletion 64999 LOC_Os05g18900 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr5 10962001 11027000 0 0 Deletion 64999 LOC_Os05g18910 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr5 10962001 11027000 0 0 Deletion 64999 LOC_Os05g18920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr5 10962001 11027000 0 0 Deletion 64999 LOC_Os05g18930 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr5 10962001 11027000 0 0 Deletion 64999 LOC_Os05g18940 STIGL3 - Stigma-specific Stig1 family protein precursor, putative, expressed FN3094-S Chr5 10962001 11027000 0 0 Deletion 64999 LOC_Os05g18950 pentatricopeptide, putative, expressed FN3094-S Chr5 10962001 11027000 0 0 Deletion 64999 LOC_Os05g18960 expressed protein FN3094-S Chr5 10962001 11027000 0 0 Deletion 64999 LOC_Os05g18970 expressed protein FN3094-S Chr5 10962001 11027000 0 0 Deletion 64999 LOC_Os05g18980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr5 10962001 11027000 0 0 Deletion 64999 LOC_Os05g18990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr5 10962001 11027000 0 0 Deletion 64999 LOC_Os05g19000 expressed protein FN3094-S Chr5 12172001 12202000 0 0 Deletion 29999 LOC_Os05g20750 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr5 12172001 12202000 0 0 Deletion 29999 LOC_Os05g20760 retrotransposon protein, putative, unclassified FN3094-S Chr5 12172001 12202000 0 0 Deletion 29999 LOC_Os05g20770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr5 12172001 12202000 0 0 Deletion 29999 LOC_Os05g20780 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr5 12632001 12687000 0 0 Deletion 54999 LOC_Os05g22340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr5 12632001 12687000 0 0 Deletion 54999 LOC_Os05g22350 retrotransposon, putative, centromere-specific, expressed FN3094-S Chr5 12632001 12687000 0 0 Deletion 54999 LOC_Os05g22360 hypothetical protein FN3094-S Chr5 12632001 12687000 0 0 Deletion 54999 LOC_Os05g22370 N-acetylglucosaminyl transferase component, putative, expressed FN3094-S Chr5 12827001 12843000 0 0 Deletion 15999 LOC_Os05g22614 PTAC16, putative, expressed FN3094-S Chr5 12827001 12843000 0 0 Deletion 15999 LOC_Os05g22920 digestive organ expansion factor, putative, expressed FN3094-S Chr5 13042001 13070000 0 0 Deletion 27999 LOC_Os05g22930 CAAX amino terminal protease family protein, putative, expressed FN3094-S Chr5 13042001 13070000 0 0 Deletion 27999 LOC_Os05g22940 acetyl-CoA carboxylase, putative, expressed FN3094-S Chr5 13042001 13070000 0 0 Deletion 27999 LOC_Os05g23490 expressed protein FN3094-S Chr5 13684001 13712000 0 0 Deletion 27999 LOC_Os05g23820 retrotransposon, putative, centromere-specific FN3094-S Chr5 13684001 13712000 0 0 Deletion 27999 LOC_Os05g23830 endo-1,4-beta-xylanase, putative, expressed FN3094-S Chr5 13684001 13712000 0 0 Deletion 27999 LOC_Os05g23840 expressed protein FN3094-S Chr5 13684001 13712000 0 0 Deletion 27999 LOC_Os05g23850 expressed protein FN3094-S Chr5 13971001 13987000 0 0 Deletion 15999 LOC_Os05g24190 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr5 14107001 14117000 0 0 Deletion 9999 LOC_Os05g24430 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr5 14107001 14117000 0 0 Deletion 9999 LOC_Os05g24440 retrotransposon protein, putative, unclassified FN3094-S Chr5 14107001 14117000 0 0 Deletion 9999 LOC_Os05g24450 hypothetical protein FN3094-S Chr5 15124001 15193000 0 0 Deletion 68999 LOC_Os05g26020 cyclin, putative, expressed FN3094-S Chr5 15124001 15193000 0 0 Deletion 68999 LOC_Os05g26026 expressed protein FN3094-S Chr5 15124001 15193000 0 0 Deletion 68999 LOC_Os05g26032 expressed protein FN3094-S Chr5 15124001 15193000 0 0 Deletion 68999 LOC_Os05g26040 pumilio-family RNA binding repeat containing protein, expressed FN3094-S Chr5 15124001 15193000 0 0 Deletion 68999 LOC_Os05g26049 expressed protein FN3094-S Chr5 15124001 15193000 0 0 Deletion 68999 LOC_Os05g26060 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr5 15124001 15193000 0 0 Deletion 68999 LOC_Os05g26070 cyclin, putative, expressed FN3094-S Chr5 15124001 15193000 0 0 Deletion 68999 LOC_Os05g26080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr5 15124001 15193000 0 0 Deletion 68999 LOC_Os05g26090 transposon protein, putative, CACTA, En/Spm sub-class FN3094-S Chr5 15124001 15193000 0 0 Deletion 68999 LOC_Os05g26100 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr5 15124001 15193000 0 0 Deletion 68999 LOC_Os05g26110 transposon protein, putative, Mutator sub-class, expressed FN3094-S Chr5 15124001 15193000 0 0 Deletion 68999 LOC_Os05g26120 expressed protein FN3094-S Chr5 15321001 15354000 0 0 Deletion 32999 LOC_Os05g26350 PROLM4 - Prolamin precursor, expressed FN3094-S Chr5 15321001 15354000 0 0 Deletion 32999 LOC_Os05g26368 prolamin precursor, putative, expressed FN3094-S Chr5 15321001 15354000 0 0 Deletion 32999 LOC_Os05g26377 PROLM9 - Prolamin precursor, expressed FN3094-S Chr5 15321001 15354000 0 0 Deletion 32999 LOC_Os05g26386 prolamin precursor, putative, expressed FN3094-S Chr5 15321001 15354000 0 0 Deletion 32999 LOC_Os05g26410 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr5 15321001 15354000 0 0 Deletion 32999 LOC_Os05g26710 retrotransposon protein, putative, unclassified FN3094-S Chr5 15511001 15537000 0 0 Deletion 25999 LOC_Os05g26720 PROLM16 - Prolamin precursor, expressed FN3094-S Chr5 15511001 15537000 0 0 Deletion 25999 LOC_Os05g26730 retrotransposon protein, putative, LINE subclass, expressed FN3094-S Chr5 15511001 15537000 0 0 Deletion 25999 LOC_Os05g26740 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr5 15511001 15537000 0 0 Deletion 25999 LOC_Os05g26750 PROLM17 - Prolamin precursor, expressed FN3094-S Chr5 15511001 15537000 0 0 Deletion 25999 LOC_Os05g26760 expressed protein FN3094-S Chr5 15511001 15537000 0 0 Deletion 25999 LOC_Os05g26770 PROLM18 - Prolamin precursor, expressed FN3094-S Chr5 15511001 15537000 0 0 Deletion 25999 LOC_Os05g26780 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr5 15780001 15798000 0 0 Deletion 17999 LOC_Os05g27130 transposon protein, putative, CACTA, En/Spm sub-class FN3094-S Chr5 15780001 15798000 0 0 Deletion 17999 LOC_Os05g27140 transposon protein, putative, CACTA, En/Spm sub-class FN3094-S Chr5 16063328 16063334 0 0 Deletion 6 disruptive_inframe_deletion HET LOC_Os05g27600 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr5 16325116 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3094-S Chr5 17409001 17427000 0 0 Deletion 17999 LOC_Os05g30100 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr5 17409001 17427000 0 0 Deletion 17999 LOC_Os05g31630 transposon protein, putative, unclassified, expressed FN3094-S Chr5 19542001 19577000 0 0 Deletion 34999 LOC_Os05g33330 transposon protein, putative, CACTA, En/Spm sub-class FN3094-S Chr5 19542001 19577000 0 0 Deletion 34999 LOC_Os05g33340 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr5 19778001 19805000 0 0 Deletion 26999 LOC_Os05g33620 expressed protein FN3094-S Chr5 19778001 19805000 0 0 Deletion 26999 LOC_Os05g33630 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed FN3094-S Chr5 19778001 19805000 0 0 Deletion 26999 LOC_Os05g33644 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed FN3094-S Chr5 19778001 19805000 0 0 Deletion 26999 LOC_Os05g34040 monooxygenase, putative, expressed FN3094-S Chr5 2030001 2050000 0 0 Deletion 19999 LOC_Os05g04420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr5 2030001 2050000 0 0 Deletion 19999 LOC_Os05g04430 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr5 2030001 2050000 0 0 Deletion 19999 LOC_Os05g04440 peroxidase precursor, putative, expressed FN3094-S Chr5 2030001 2050000 0 0 Deletion 19999 LOC_Os05g06360 heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed FN3094-S Chr5 20358272 20358272 0 0 Insertion 2 upstream_gene_variant HET FN3094-S Chr5 21829001 21906000 0 0 Deletion 76999 LOC_Os05g37320 transposon protein, putative, unclassified, expressed FN3094-S Chr5 21829001 21906000 0 0 Deletion 76999 LOC_Os05g37330 60S acidic ribosomal protein, putative, expressed FN3094-S Chr5 21829001 21906000 0 0 Deletion 76999 LOC_Os05g37340 expressed protein FN3094-S Chr5 21829001 21906000 0 0 Deletion 76999 LOC_Os05g37350 hhH-GPD superfamily base excision DNA repair protein, expressed FN3094-S Chr5 21829001 21906000 0 0 Deletion 76999 LOC_Os05g37360 hypothetical protein FN3094-S Chr5 21829001 21906000 0 0 Deletion 76999 LOC_Os05g37370 retrotransposon protein, putative, unclassified FN3094-S Chr5 21829001 21906000 0 0 Deletion 76999 LOC_Os05g37380 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr5 21829001 21906000 0 0 Deletion 76999 LOC_Os05g37390 G10 protein, putative, expressed FN3094-S Chr5 21829001 21906000 0 0 Deletion 76999 LOC_Os05g37400 expressed protein FN3094-S Chr5 21829001 21906000 0 0 Deletion 76999 LOC_Os05g37410 hhH-GPD superfamily base excision DNA repair protein, expressed FN3094-S Chr5 21829001 21906000 0 0 Deletion 76999 LOC_Os05g37420 expressed protein FN3094-S Chr5 21829001 21906000 0 0 Deletion 76999 LOC_Os05g37434 arginyl-tRNA--protein transferase 1, putative, expressed FN3094-S Chr5 22929001 22954000 0 0 Deletion 24999 LOC_Os05g39110 selT-like protein precursor, putative, expressed FN3094-S Chr5 22929001 22954000 0 0 Deletion 24999 LOC_Os05g39120 expressed protein FN3094-S Chr5 22929001 22954000 0 0 Deletion 24999 LOC_Os05g39130 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr5 23701001 23720000 0 0 Deletion 18999 LOC_Os05g40340 expressed protein FN3094-S Chr5 23701001 23720000 0 0 Deletion 18999 LOC_Os05g40350 expressed protein FN3094-S Chr5 23701001 23720000 0 0 Deletion 18999 LOC_Os05g40360 expressed protein FN3094-S Chr5 24448941 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3094-S Chr5 26103001 26150000 0 0 Deletion 46999 LOC_Os05g44922 6-phosphofructokinase, putative, expressed FN3094-S Chr5 26103001 26150000 0 0 Deletion 46999 LOC_Os05g44930 receptor-like protein kinase, putative, expressed FN3094-S Chr5 26103001 26150000 0 0 Deletion 46999 LOC_Os05g44940 protein kinase domain containing protein, expressed FN3094-S Chr5 26103001 26150000 0 0 Deletion 46999 LOC_Os05g44950 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN3094-S Chr5 26103001 26150000 0 0 Deletion 46999 LOC_Os05g44960 expressed protein FN3094-S Chr5 26103001 26150000 0 0 Deletion 46999 LOC_Os05g44970 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN3094-S Chr5 26826001 26868000 0 0 Deletion 41999 LOC_Os05g46270 FEN1A - Putative flap endonuclease protein, expressed FN3094-S Chr5 26826001 26868000 0 0 Deletion 41999 LOC_Os05g46280 expressed protein FN3094-S Chr5 26826001 26868000 0 0 Deletion 41999 LOC_Os05g46290 T-complex protein, putative, expressed FN3094-S Chr5 26826001 26868000 0 0 Deletion 41999 LOC_Os05g46300 OsFBX172 - F-box domain containing protein, expressed FN3094-S Chr5 26826001 26868000 0 0 Deletion 41999 LOC_Os05g46310 expressed protein FN3094-S Chr5 26826001 26868000 0 0 Deletion 41999 LOC_Os05g46320 OsFBX173 - F-box domain containing protein, expressed FN3094-S Chr5 26826001 26868000 0 0 Deletion 41999 LOC_Os05g46330 MYB family transcription factor, putative, expressed FN3094-S Chr5 26826001 26868000 0 0 Deletion 41999 LOC_Os05g46340 expressed protein FN3094-S Chr5 26826001 26868000 0 0 Deletion 41999 LOC_Os05g46350 IQ calmodulin-binding motif domain containing protein, expressed FN3094-S Chr5 29167001 29190000 0 0 Deletion 22999 LOC_Os05g50860 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr5 29167001 29190000 0 0 Deletion 22999 LOC_Os05g50870 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr5 29167001 29190000 0 0 Deletion 22999 LOC_Os05g50880 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr5 4279261 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3094-S Chr5 4279274 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3094-S Chr5 4798716 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3094-S Chr5 5152001 5173000 0 0 Deletion 20999 LOC_Os05g09220 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr5 5152001 5173000 0 0 Deletion 20999 LOC_Os05g09230 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr5 5152001 5173000 0 0 Deletion 20999 LOC_Os05g09240 AGAP006957-PA, putative, expressed FN3094-S Chr5 5152001 5173000 0 0 Deletion 20999 LOC_Os05g09250 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr5 5379369 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3094-S Chr5 5565969 5565970 0 0 Deletion 1 frameshift_variant HET LOC_Os05g10230 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr5 6549001 6583000 0 0 Deletion 33999 LOC_Os05g11580 expressed protein FN3094-S Chr5 6549001 6583000 0 0 Deletion 33999 LOC_Os05g11590 expressed protein FN3094-S Chr5 6549001 6583000 0 0 Deletion 33999 LOC_Os05g11600 expressed protein FN3094-S Chr5 6549001 6583000 0 0 Deletion 33999 LOC_Os05g11610 expressed protein FN3094-S Chr5 6549001 6583000 0 0 Deletion 33999 LOC_Os05g11620 expressed protein FN3094-S Chr5 6620034 6620060 0 0 Deletion 26 upstream_gene_variant HET FN3094-S Chr5 6663001 6701000 0 0 Deletion 37999 LOC_Os05g11750 protein kinase, putative, expressed FN3094-S Chr5 6663001 6701000 0 0 Deletion 37999 LOC_Os05g11760 hypothetical protein FN3094-S Chr5 6663001 6701000 0 0 Deletion 37999 LOC_Os05g11770 ulp1 protease family protein, putative, expressed FN3094-S Chr5 6663001 6701000 0 0 Deletion 37999 LOC_Os05g11780 mitochondrial carrier protein, putative, expressed FN3094-S Chr5 677109 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3094-S Chr5 7234001 7255000 0 0 Deletion 20999 LOC_Os05g12620 retrotransposon, putative, centromere-specific, expressed FN3094-S Chr5 7234001 7255000 0 0 Deletion 20999 LOC_Os05g12630 expressed protein FN3094-S Chr5 7234001 7255000 0 0 Deletion 20999 LOC_Os05g12660 hypothetical protein FN3094-S Chr5 7866001 7896000 0 0 Deletion 29999 LOC_Os05g14090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr5 7866001 7896000 0 0 Deletion 29999 LOC_Os05g14100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr5 7866001 7896000 0 0 Deletion 29999 LOC_Os05g14110 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr5 7866001 7896000 0 0 Deletion 29999 LOC_Os05g14120 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr5 7866001 7896000 0 0 Deletion 29999 LOC_Os05g14130 ZOS5-05 - C2H2 zinc finger protein, expressed FN3094-S Chr5 8234001 8256000 0 0 Deletion 21999 LOC_Os05g14750 AGC_PVPK_like_kin82y.12 - ACG kinases include homologs to PKA, PKG and PKC, expressed FN3094-S Chr5 8386001 8421000 0 0 Deletion 34999 LOC_Os05g14780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr5 8386001 8421000 0 0 Deletion 34999 LOC_Os05g14790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr5 8386001 8421000 0 0 Deletion 34999 LOC_Os05g14800 cycloartenol synthase, putative, expressed FN3094-S Chr5 8386001 8421000 0 0 Deletion 34999 LOC_Os05g14810 retrotransposon protein, putative, Ty1-copia subclass FN3094-S Chr5 9182001 9249000 0 0 Deletion 66999 LOC_Os05g16250 expressed protein FN3094-S Chr5 9182001 9249000 0 0 Deletion 66999 LOC_Os05g16260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr5 9182001 9249000 0 0 Deletion 66999 LOC_Os05g16270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr5 9182001 9249000 0 0 Deletion 66999 LOC_Os05g16280 transposon protein, putative, unclassified, expressed FN3094-S Chr5 9182001 9249000 0 0 Deletion 66999 LOC_Os05g16290 transposon protein, putative, unclassified, expressed FN3094-S Chr5 9182001 9249000 0 0 Deletion 66999 LOC_Os05g16300 expressed protein FN3094-S Chr5 9182001 9249000 0 0 Deletion 66999 LOC_Os05g16315 translation initiation factor IF-2, putative, expressed FN3094-S Chr5 9182001 9249000 0 0 Deletion 66999 LOC_Os05g16320 expressed protein FN3094-S Chr5 9182001 9249000 0 0 Deletion 66999 LOC_Os05g16330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr5 9468001 9482000 0 0 Deletion 13999 LOC_Os05g16680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr5 9468001 9482000 0 0 Deletion 13999 LOC_Os05g16740 SHR5-receptor-like kinase, putative, expressed FN3094-S Chr5 9710001 9746000 0 0 Deletion 35999 LOC_Os05g17010 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr5 9710001 9746000 0 0 Deletion 35999 LOC_Os05g17020 expressed protein FN3094-S Chr5 9710001 9746000 0 0 Deletion 35999 LOC_Os05g17030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr5 9710001 9746000 0 0 Deletion 35999 LOC_Os05g17040 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr5 9710001 9746000 0 0 Deletion 35999 LOC_Os05g17050 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr5 9710001 9746000 0 0 Deletion 35999 LOC_Os05g17060 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 10042625 10042627 0 0 Deletion 2 INTERGENIC HET FN3094-S Chr6 1146001 1161000 0 0 Deletion 14999 LOC_Os06g03120 aspartic proteinase nepenthesin-2 precursor, putative, expressed FN3094-S Chr6 11840001 11862000 0 0 Deletion 21999 LOC_Os06g20580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr6 11840001 11862000 0 0 Deletion 21999 LOC_Os06g20590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr6 11840001 11862000 0 0 Deletion 21999 LOC_Os06g20600 retrotransposon protein, putative, unclassified FN3094-S Chr6 11840001 11862000 0 0 Deletion 21999 LOC_Os06g20650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr6 12045001 12072000 0 0 Deletion 26999 LOC_Os06g20860 paramyosin, putative, expressed FN3094-S Chr6 12045001 12072000 0 0 Deletion 26999 LOC_Os06g20870 pentatricopeptide repeat protein PPR1106-17, putative, expressed FN3094-S Chr6 12045001 12072000 0 0 Deletion 26999 LOC_Os06g20879 expressed protein FN3094-S Chr6 12113001 12148000 0 0 Deletion 34999 LOC_Os06g20960 SAM dependent carboxyl methyltransferase, putative, expressed FN3094-S Chr6 12113001 12148000 0 0 Deletion 34999 LOC_Os06g20970 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr6 12113001 12148000 0 0 Deletion 34999 LOC_Os06g20980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr6 12113001 12148000 0 0 Deletion 34999 LOC_Os06g20990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr6 12113001 12148000 0 0 Deletion 34999 LOC_Os06g21000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr6 12113001 12148000 0 0 Deletion 34999 LOC_Os06g21010 transposon protein, putative, unclassified, expressed FN3094-S Chr6 12113001 12148000 0 0 Deletion 34999 LOC_Os06g21020 methyltransferase, putative, expressed FN3094-S Chr6 12283001 12319000 0 0 Deletion 35999 LOC_Os06g21250 glycine rich protein family protein, putative, expressed FN3094-S Chr6 12283001 12319000 0 0 Deletion 35999 LOC_Os06g21260 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 12283001 12319000 0 0 Deletion 35999 LOC_Os06g21270 glycine rich protein family protein, putative, expressed FN3094-S Chr6 12283001 12319000 0 0 Deletion 35999 LOC_Os06g21280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr6 12283001 12319000 0 0 Deletion 35999 LOC_Os06g21290 expressed protein FN3094-S Chr6 12283001 12319000 0 0 Deletion 35999 LOC_Os06g21300 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr6 12283001 12319000 0 0 Deletion 35999 LOC_Os06g21310 glycine-rich cell wall structural protein precursor, putative, expressed FN3094-S Chr6 12283001 12319000 0 0 Deletion 35999 LOC_Os06g21320 hypothetical protein FN3094-S Chr6 12283001 12319000 0 0 Deletion 35999 LOC_Os06g21330 ABB1 - Ankyrin repeat region with 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains, expressed FN3094-S Chr6 13036001 13089000 0 0 Deletion 52999 LOC_Os06g22440 SAM dependent carboxyl methyltransferase, putative, expressed FN3094-S Chr6 13036001 13089000 0 0 Deletion 52999 LOC_Os06g22450 expressed protein FN3094-S Chr6 13036001 13089000 0 0 Deletion 52999 LOC_Os06g22460 disease resistance protein RPM1, putative, expressed FN3094-S Chr6 13036001 13089000 0 0 Deletion 52999 LOC_Os06g22470 hypothetical protein FN3094-S Chr6 13036001 13089000 0 0 Deletion 52999 LOC_Os06g22480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr6 13036001 13089000 0 0 Deletion 52999 LOC_Os06g22490 sphingolipid C4-hydroxylase SUR2, putative, expressed FN3094-S Chr6 13036001 13089000 0 0 Deletion 52999 LOC_Os06g22500 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 13036001 13089000 0 0 Deletion 52999 LOC_Os06g22510 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr6 13036001 13089000 0 0 Deletion 52999 LOC_Os06g22520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr6 13258001 13269000 0 0 Deletion 10999 LOC_Os06g22780 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr6 13258001 13269000 0 0 Deletion 10999 LOC_Os06g22790 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 13258001 13269000 0 0 Deletion 10999 LOC_Os06g23240 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr6 13628001 13647000 0 0 Deletion 18999 LOC_Os06g23350 late embryogenesis abundant protein D-34, putative, expressed FN3094-S Chr6 13628001 13647000 0 0 Deletion 18999 LOC_Os06g23360 LTPL70 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3094-S Chr6 13628001 13647000 0 0 Deletion 18999 LOC_Os06g23370 expressed protein FN3094-S Chr6 13690001 13727000 0 0 Deletion 36999 LOC_Os06g23470 hypothetical protein FN3094-S Chr6 13690001 13727000 0 0 Deletion 36999 LOC_Os06g23480 expressed protein FN3094-S Chr6 13690001 13727000 0 0 Deletion 36999 LOC_Os06g23504 DTW domain containing protein, putative, expressed FN3094-S Chr6 13690001 13727000 0 0 Deletion 36999 LOC_Os06g23530 pre-mRNA-splicing factor ATP-dependent RNA helicase, putative, expressed FN3094-S Chr6 13757001 13771000 0 0 Deletion 13999 LOC_Os06g23684 tyrosine aminotransferase, putative, expressed FN3094-S Chr6 13770954 13770955 0 0 Deletion 1 upstream_gene_variant HET FN3094-S Chr6 13835001 13898000 0 0 Deletion 62999 LOC_Os06g23710 retrotransposon protein, putative, unclassified FN3094-S Chr6 13835001 13898000 0 0 Deletion 62999 LOC_Os06g23720 retrotransposon protein, putative, unclassified FN3094-S Chr6 13835001 13898000 0 0 Deletion 62999 LOC_Os06g23730 retrotransposon, putative, centromere-specific FN3094-S Chr6 13835001 13898000 0 0 Deletion 62999 LOC_Os06g23740 expressed protein FN3094-S Chr6 13835001 13898000 0 0 Deletion 62999 LOC_Os06g23750 expressed protein FN3094-S Chr6 13835001 13898000 0 0 Deletion 62999 LOC_Os06g23760 acyl-CoA oxidase, putative, expressed FN3094-S Chr6 13835001 13898000 0 0 Deletion 62999 LOC_Os06g23770 expressed protein FN3094-S Chr6 13835001 13898000 0 0 Deletion 62999 LOC_Os06g23775 expressed protein FN3094-S Chr6 13835001 13898000 0 0 Deletion 62999 LOC_Os06g23780 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed FN3094-S Chr6 13835001 13898000 0 0 Deletion 62999 LOC_Os06g23840 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 13930001 13959000 0 0 Deletion 28999 LOC_Os06g23850 expressed protein FN3094-S Chr6 13930001 13959000 0 0 Deletion 28999 LOC_Os06g23860 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr6 13930001 13959000 0 0 Deletion 28999 LOC_Os06g23870 acyl-CoA dehydrogenase domain protein, putative, expressed FN3094-S Chr6 13930001 13959000 0 0 Deletion 28999 LOC_Os06g23880 hypothetical protein FN3094-S Chr6 13930001 13959000 0 0 Deletion 28999 LOC_Os06g24150 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr6 14126001 14158000 0 0 Deletion 31999 LOC_Os06g24160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr6 14126001 14158000 0 0 Deletion 31999 LOC_Os06g24170 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr6 14126001 14158000 0 0 Deletion 31999 LOC_Os06g24180 cytochrome P450 84A1, putative, expressed FN3094-S Chr6 14126001 14158000 0 0 Deletion 31999 LOC_Os06g24350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr6 14299001 14334000 0 0 Deletion 34999 LOC_Os06g24420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr6 14299001 14334000 0 0 Deletion 34999 LOC_Os06g24430 expressed protein FN3094-S Chr6 14299001 14334000 0 0 Deletion 34999 LOC_Os06g24440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr6 14299001 14334000 0 0 Deletion 34999 LOC_Os06g24450 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr6 14299001 14334000 0 0 Deletion 34999 LOC_Os06g24460 pleiotropic drug resistance protein 2, putative, expressed FN3094-S Chr6 14894001 14944000 0 0 Deletion 49999 LOC_Os06g25500 expressed protein FN3094-S Chr6 14894001 14944000 0 0 Deletion 49999 LOC_Os06g25510 expressed protein FN3094-S Chr6 14894001 14944000 0 0 Deletion 49999 LOC_Os06g25520 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 14894001 14944000 0 0 Deletion 49999 LOC_Os06g25530 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 14894001 14944000 0 0 Deletion 49999 LOC_Os06g25540 expressed protein FN3094-S Chr6 14894001 14944000 0 0 Deletion 49999 LOC_Os06g25550 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 14894001 14944000 0 0 Deletion 49999 LOC_Os06g25560 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 14894001 14944000 0 0 Deletion 49999 LOC_Os06g25840 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr6 15095001 15122000 0 0 Deletion 26999 LOC_Os06g25840 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr6 15095001 15122000 0 0 Deletion 26999 LOC_Os06g25850 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 15095001 15122000 0 0 Deletion 26999 LOC_Os06g25860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr6 15095001 15122000 0 0 Deletion 26999 LOC_Os06g25870 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 15095001 15122000 0 0 Deletion 26999 LOC_Os06g25880 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 15143001 15161000 0 0 Deletion 17999 LOC_Os06g25900 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 15143001 15161000 0 0 Deletion 17999 LOC_Os06g25910 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr6 15745001 15773000 0 0 Deletion 27999 LOC_Os06g27820 expressed protein FN3094-S Chr6 15745001 15773000 0 0 Deletion 27999 LOC_Os06g27830 expressed protein FN3094-S Chr6 15745001 15773000 0 0 Deletion 27999 LOC_Os06g27840 retrotransposon protein, putative, LINE subclass, expressed FN3094-S Chr6 15745001 15773000 0 0 Deletion 27999 LOC_Os06g28310 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 16074001 16099000 0 0 Deletion 24999 LOC_Os06g28310 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 16074001 16099000 0 0 Deletion 24999 LOC_Os06g28320 retrotransposon, putative, centromere-specific FN3094-S Chr6 16074001 16099000 0 0 Deletion 24999 LOC_Os06g28330 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 16111024 16111024 0 0 Insertion 2 INTRON HET FN3094-S Chr6 16529001 16644000 0 0 Deletion 114999 LOC_Os06g29000 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 16529001 16644000 0 0 Deletion 114999 LOC_Os06g29010 expressed protein FN3094-S Chr6 16529001 16644000 0 0 Deletion 114999 LOC_Os06g29020 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 16529001 16644000 0 0 Deletion 114999 LOC_Os06g29030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr6 16529001 16644000 0 0 Deletion 114999 LOC_Os06g29040 retrotransposon protein, putative, unclassified FN3094-S Chr6 16529001 16644000 0 0 Deletion 114999 LOC_Os06g29050 transposon protein, putative, unclassified, expressed FN3094-S Chr6 16529001 16644000 0 0 Deletion 114999 LOC_Os06g29060 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 16529001 16644000 0 0 Deletion 114999 LOC_Os06g29070 retrotransposon protein, putative, unclassified FN3094-S Chr6 16529001 16644000 0 0 Deletion 114999 LOC_Os06g29080 expressed protein FN3094-S Chr6 16529001 16644000 0 0 Deletion 114999 LOC_Os06g29100 expressed protein FN3094-S Chr6 16529001 16644000 0 0 Deletion 114999 LOC_Os06g29110 MLO domain containing protein, putative, expressed FN3094-S Chr6 16529001 16644000 0 0 Deletion 114999 LOC_Os06g29120 STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed FN3094-S Chr6 16529001 16644000 0 0 Deletion 114999 LOC_Os06g29130 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 16529001 16644000 0 0 Deletion 114999 LOC_Os06g29140 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 16529001 16644000 0 0 Deletion 114999 LOC_Os06g29150 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 16529001 16644000 0 0 Deletion 114999 LOC_Os06g29160 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 16529001 16644000 0 0 Deletion 114999 LOC_Os06g29170 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 16916001 16946000 0 0 Deletion 29999 LOC_Os06g29520 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 16916001 16946000 0 0 Deletion 29999 LOC_Os06g29530 retrotransposon protein, putative, unclassified FN3094-S Chr6 16916001 16946000 0 0 Deletion 29999 LOC_Os06g29540 expressed protein FN3094-S Chr6 16916001 16946000 0 0 Deletion 29999 LOC_Os06g29550 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 16916001 16946000 0 0 Deletion 29999 LOC_Os06g29560 expressed protein FN3094-S Chr6 16916001 16946000 0 0 Deletion 29999 LOC_Os06g29570 retrotransposon protein, putative, unclassified FN3094-S Chr6 16916001 16946000 0 0 Deletion 29999 LOC_Os06g29630 transposon protein, putative, unclassified, expressed FN3094-S Chr6 17312001 17332000 0 0 Deletion 19999 LOC_Os06g30060 expressed protein FN3094-S Chr6 17312001 17332000 0 0 Deletion 19999 LOC_Os06g30070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr6 17312001 17332000 0 0 Deletion 19999 LOC_Os06g30080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr6 18053214 18053215 0 0 Deletion 1 upstream_gene_variant HET FN3094-S Chr6 21257001 21295000 0 0 Deletion 37999 LOC_Os06g36280 retrotransposon protein, putative, Ty1-copia subclass FN3094-S Chr6 21257001 21295000 0 0 Deletion 37999 LOC_Os06g36290 retrotransposon protein, putative, Ty1-copia subclass FN3094-S Chr6 21257001 21295000 0 0 Deletion 37999 LOC_Os06g36310 receptor-like protein kinase 5 precursor, putative, expressed FN3094-S Chr6 21257001 21295000 0 0 Deletion 37999 LOC_Os06g36320 receptor-like protein kinase 5 precursor, putative, expressed FN3094-S Chr6 22167001 22192000 0 0 Deletion 24999 LOC_Os06g37480 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 22167001 22192000 0 0 Deletion 24999 LOC_Os06g37490 expressed protein FN3094-S Chr6 23320001 23337000 0 0 Deletion 16999 LOC_Os06g39300 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 23320001 23337000 0 0 Deletion 16999 LOC_Os06g39310 retrotransposon protein, putative, unclassified FN3094-S Chr6 23320001 23337000 0 0 Deletion 16999 LOC_Os06g39320 retrotransposon protein, putative, unclassified FN3094-S Chr6 23320001 23337000 0 0 Deletion 16999 LOC_Os06g39330 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed FN3094-S Chr6 23920001 23937000 0 0 Deletion 16999 LOC_Os06g40190 phospholipase D, putative, expressed FN3094-S Chr6 23920001 23937000 0 0 Deletion 16999 LOC_Os06g40200 calcium-binding mitochondrial carrier CBG00135, putative, expressed FN3094-S Chr6 23920001 23937000 0 0 Deletion 16999 LOC_Os06g40950 DNA-directed RNA polymerase I subunit RPA1, putative, expressed FN3094-S Chr6 24413001 24431000 0 0 Deletion 17999 LOC_Os06g40950 DNA-directed RNA polymerase I subunit RPA1, putative, expressed FN3094-S Chr6 24622001 24672000 0 0 Deletion 49999 LOC_Os06g41160 expressed protein FN3094-S Chr6 24622001 24672000 0 0 Deletion 49999 LOC_Os06g41170 retrotransposon protein, putative, unclassified FN3094-S Chr6 24622001 24672000 0 0 Deletion 49999 LOC_Os06g41180 retrotransposon protein, putative, unclassified FN3094-S Chr6 24622001 24672000 0 0 Deletion 49999 LOC_Os06g41190 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr6 24622001 24672000 0 0 Deletion 49999 LOC_Os06g41200 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr6 24622001 24672000 0 0 Deletion 49999 LOC_Os06g41210 hypothetical protein FN3094-S Chr6 5633001 5653000 0 0 Deletion 19999 LOC_Os06g10800 zinc finger family protein, putative, expressed FN3094-S Chr6 5633001 5653000 0 0 Deletion 19999 LOC_Os06g10810 phosphate carrier protein, mitochondrial precursor, putative, expressed FN3094-S Chr6 5633001 5653000 0 0 Deletion 19999 LOC_Os06g10820 helix-loop-helix DNA-binding domain containing protein, expressed FN3094-S Chr6 5633001 5653000 0 0 Deletion 19999 LOC_Os06g10830 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 5633001 5653000 0 0 Deletion 19999 LOC_Os06g11240 12-oxophytodienoate reductase, putative, expressed FN3094-S Chr6 5718480 5718480 0 0 Insertion 2 INTERGENIC HET FN3094-S Chr6 6317001 6355000 0 0 Deletion 37999 LOC_Os06g11890 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr6 6317001 6355000 0 0 Deletion 37999 LOC_Os06g11900 expressed protein FN3094-S Chr6 6317001 6355000 0 0 Deletion 37999 LOC_Os06g11910 expressed protein FN3094-S Chr6 6317001 6355000 0 0 Deletion 37999 LOC_Os06g11920 endonuclease/exonuclease/phosphatase family domain containing protein, expressed FN3094-S Chr6 6317001 6355000 0 0 Deletion 37999 LOC_Os06g13870 U-box protein CMPG1, putative, expressed FN3094-S Chr6 7548425 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os06g13630 transposon protein, putative, Mutator sub-class, expressed FN3094-S Chr6 7876001 7901000 0 0 Deletion 24999 LOC_Os06g14130 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr6 7876001 7901000 0 0 Deletion 24999 LOC_Os06g14140 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr6 7876001 7901000 0 0 Deletion 24999 LOC_Os06g14150 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 7876001 7901000 0 0 Deletion 24999 LOC_Os06g14160 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr6 7876001 7901000 0 0 Deletion 24999 LOC_Os06g14290 transposon protein, putative, unclassified, expressed FN3094-S Chr6 9110001 9169000 0 0 Deletion 58999 LOC_Os06g16010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr6 9110001 9169000 0 0 Deletion 58999 LOC_Os06g16020 expressed protein FN3094-S Chr6 9110001 9169000 0 0 Deletion 58999 LOC_Os06g16030 amidase family protein, putative, expressed FN3094-S Chr6 9110001 9169000 0 0 Deletion 58999 LOC_Os06g16040 expressed protein FN3094-S Chr6 9110001 9169000 0 0 Deletion 58999 LOC_Os06g16050 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr6 9110001 9169000 0 0 Deletion 58999 LOC_Os06g16060 zinc finger, C3HC4 type domain containing protein, expressed FN3094-S Chr6 9110001 9169000 0 0 Deletion 58999 LOC_Os06g16070 receptor-like protein kinase 2 precursor, putative, expressed FN3094-S Chr6 9110001 9169000 0 0 Deletion 58999 LOC_Os06g16080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr6 9110001 9169000 0 0 Deletion 58999 LOC_Os06g16090 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr6 9110001 9169000 0 0 Deletion 58999 LOC_Os06g16100 retrotransposon, putative, centromere-specific, expressed FN3094-S Chr6 9264001 9283000 0 0 Deletion 18999 LOC_Os06g16280 expressed protein FN3094-S Chr6 9264001 9283000 0 0 Deletion 18999 LOC_Os06g16760 expressed protein FN3094-S Chr6 9710001 9750000 0 0 Deletion 39999 LOC_Os06g16770 expressed protein FN3094-S Chr6 9710001 9750000 0 0 Deletion 39999 LOC_Os06g16780 expressed protein FN3094-S Chr6 9710001 9750000 0 0 Deletion 39999 LOC_Os06g16790 go35 NBS-LRR, putative, expressed FN3094-S Chr6 9710001 9750000 0 0 Deletion 39999 LOC_Os06g16810 polygalacturonase precursor, putative, expressed FN3094-S Chr6 9710001 9750000 0 0 Deletion 39999 LOC_Os06g16820 expressed protein FN3094-S Chr6 9710001 9750000 0 0 Deletion 39999 LOC_Os06g16830 retrotransposon protein, putative, Ty1-copia subclass FN3094-S Chr7 10340001 10362000 0 0 Deletion 21999 LOC_Os07g17510 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr7 10340001 10362000 0 0 Deletion 21999 LOC_Os07g17520 expressed protein FN3094-S Chr7 10340001 10362000 0 0 Deletion 21999 LOC_Os07g17530 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr7 10340001 10362000 0 0 Deletion 21999 LOC_Os07g17940 retrotransposon protein, putative, unclassified FN3094-S Chr7 10610001 10657000 0 0 Deletion 46999 LOC_Os07g17950 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr7 10610001 10657000 0 0 Deletion 46999 LOC_Os07g17960 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr7 10610001 10657000 0 0 Deletion 46999 LOC_Os07g17970 AMP-binding domain containing protein, expressed FN3094-S Chr7 10610001 10657000 0 0 Deletion 46999 LOC_Os07g17980 retrotransposon, putative, centromere-specific, expressed FN3094-S Chr7 10610001 10657000 0 0 Deletion 46999 LOC_Os07g17990 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 10610001 10657000 0 0 Deletion 46999 LOC_Os07g18000 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 10872001 10900000 0 0 Deletion 27999 LOC_Os07g18360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr7 10872001 10900000 0 0 Deletion 27999 LOC_Os07g18370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr7 10872001 10900000 0 0 Deletion 27999 LOC_Os07g18380 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 10872001 10900000 0 0 Deletion 27999 LOC_Os07g18390 retrotransposon protein, putative, unclassified FN3094-S Chr7 10872001 10900000 0 0 Deletion 27999 LOC_Os07g18400 retrotransposon protein, putative, unclassified FN3094-S Chr7 10872001 10900000 0 0 Deletion 27999 LOC_Os07g18410 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 10941001 11017000 0 0 Deletion 75999 LOC_Os07g18500 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 10941001 11017000 0 0 Deletion 75999 LOC_Os07g18510 OsFBLD5 - F-box, LRR and FBD domain containing protein, expressed FN3094-S Chr7 10941001 11017000 0 0 Deletion 75999 LOC_Os07g18520 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr7 10941001 11017000 0 0 Deletion 75999 LOC_Os07g18530 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr7 10941001 11017000 0 0 Deletion 75999 LOC_Os07g18540 ribosomal RNA apurinic site specific lyase, putative, expressed FN3094-S Chr7 10941001 11017000 0 0 Deletion 75999 LOC_Os07g18550 hypothetical protein FN3094-S Chr7 10941001 11017000 0 0 Deletion 75999 LOC_Os07g18560 OsFBLD6 - F-box, LRR and FBD domain containing protein, expressed FN3094-S Chr7 10941001 11017000 0 0 Deletion 75999 LOC_Os07g18570 expressed protein FN3094-S Chr7 10941001 11017000 0 0 Deletion 75999 LOC_Os07g18580 expressed protein FN3094-S Chr7 10941001 11017000 0 0 Deletion 75999 LOC_Os07g18590 expressed protein FN3094-S Chr7 10941001 11017000 0 0 Deletion 75999 LOC_Os07g18600 OsFBL37 - F-box domain and LRR containing protein, expressed FN3094-S Chr7 10941001 11017000 0 0 Deletion 75999 LOC_Os07g18610 OsFBLD7 - F-box, LRR and FBD domain containing protein, expressed FN3094-S Chr7 10941001 11017000 0 0 Deletion 75999 LOC_Os07g18620 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr7 10941001 11017000 0 0 Deletion 75999 LOC_Os07g18630 expressed protein FN3094-S Chr7 12152701 12152702 0 0 Deletion 1 intergenic_region HET FN3094-S Chr7 13093001 13123000 0 0 Deletion 29999 LOC_Os07g23244 ribosomal protein L23 family protein, putative, expressed FN3094-S Chr7 13093001 13123000 0 0 Deletion 29999 LOC_Os07g23260 expressed protein FN3094-S Chr7 13093001 13123000 0 0 Deletion 29999 LOC_Os07g23270 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr7 13093001 13123000 0 0 Deletion 29999 LOC_Os07g23280 transposon protein, putative, unclassified, expressed FN3094-S Chr7 13093001 13123000 0 0 Deletion 29999 LOC_Os07g23610 transposon protein, putative, CACTA, En/Spm sub-class FN3094-S Chr7 13469001 13570000 0 0 Deletion 100999 LOC_Os07g23860 expressed protein FN3094-S Chr7 13469001 13570000 0 0 Deletion 100999 LOC_Os07g23870 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 13469001 13570000 0 0 Deletion 100999 LOC_Os07g23880 glycosyl hydrolase, family 31, putative, expressed FN3094-S Chr7 13469001 13570000 0 0 Deletion 100999 LOC_Os07g23890 OsFBDUF36 - F-box and DUF domain containing protein, expressed FN3094-S Chr7 13469001 13570000 0 0 Deletion 100999 LOC_Os07g23900 OsFBX234 - F-box domain containing protein, expressed FN3094-S Chr7 13469001 13570000 0 0 Deletion 100999 LOC_Os07g23910 hypothetical protein FN3094-S Chr7 13469001 13570000 0 0 Deletion 100999 LOC_Os07g23920 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr7 13469001 13570000 0 0 Deletion 100999 LOC_Os07g23930 expressed protein FN3094-S Chr7 13469001 13570000 0 0 Deletion 100999 LOC_Os07g23944 glycosyl hydrolase, family 31, putative, expressed FN3094-S Chr7 13469001 13570000 0 0 Deletion 100999 LOC_Os07g23960 transferase family protein, putative, expressed FN3094-S Chr7 13469001 13570000 0 0 Deletion 100999 LOC_Os07g23970 zinc finger, C3HC4 type domain containing protein, expressed FN3094-S Chr7 13596001 13613000 0 0 Deletion 16999 LOC_Os07g23990 tetratricopeptide repeat domain containing protein, putative, expressed FN3094-S Chr7 13596001 13613000 0 0 Deletion 16999 LOC_Os07g24000 AWPM-19-like membrane family protein, putative, expressed FN3094-S Chr7 13596001 13613000 0 0 Deletion 16999 LOC_Os07g24010 hypothetical protein FN3094-S Chr7 13596001 13613000 0 0 Deletion 16999 LOC_Os07g24020 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr7 14075001 14105000 0 0 Deletion 29999 LOC_Os07g24770 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 14075001 14105000 0 0 Deletion 29999 LOC_Os07g24780 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr7 14075001 14105000 0 0 Deletion 29999 LOC_Os07g24790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr7 14075001 14105000 0 0 Deletion 29999 LOC_Os07g24800 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 14075001 14105000 0 0 Deletion 29999 LOC_Os07g24810 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 14075001 14105000 0 0 Deletion 29999 LOC_Os07g25080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr7 14435001 14455000 0 0 Deletion 19999 LOC_Os07g25270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr7 14435001 14455000 0 0 Deletion 19999 LOC_Os07g25280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr7 14435001 14455000 0 0 Deletion 19999 LOC_Os07g25290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr7 14435001 14455000 0 0 Deletion 19999 LOC_Os07g25300 retrotransposon, putative, centromere-specific FN3094-S Chr7 15726001 15758000 0 0 Deletion 31999 LOC_Os07g27120 expressed protein FN3094-S Chr7 15726001 15758000 0 0 Deletion 31999 LOC_Os07g27130 hypothetical protein FN3094-S Chr7 15726001 15758000 0 0 Deletion 31999 LOC_Os07g27140 AT hook motif family protein, expressed FN3094-S Chr7 15726001 15758000 0 0 Deletion 31999 LOC_Os07g27150 trafficking protein particle complex subunit 4, putative, expressed FN3094-S Chr7 15804001 15822000 0 0 Deletion 17999 LOC_Os07g27210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr7 15804001 15822000 0 0 Deletion 17999 LOC_Os07g27220 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr7 15804001 15822000 0 0 Deletion 17999 LOC_Os07g27230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr7 15804001 15822000 0 0 Deletion 17999 LOC_Os07g27410 expressed protein FN3094-S Chr7 15969001 15996000 0 0 Deletion 26999 LOC_Os07g27410 expressed protein FN3094-S Chr7 15969001 15996000 0 0 Deletion 26999 LOC_Os07g27420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr7 15969001 15996000 0 0 Deletion 26999 LOC_Os07g27430 expressed protein FN3094-S Chr7 15969001 15996000 0 0 Deletion 26999 LOC_Os07g27450 expressed protein FN3094-S Chr7 17295001 17311000 0 0 Deletion 15999 LOC_Os07g29470 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 17295001 17311000 0 0 Deletion 15999 LOC_Os07g29480 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr7 17295001 17311000 0 0 Deletion 15999 LOC_Os07g29550 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr7 17351001 17380000 0 0 Deletion 28999 LOC_Os07g29560 expressed protein FN3094-S Chr7 17351001 17380000 0 0 Deletion 28999 LOC_Os07g29570 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 17351001 17380000 0 0 Deletion 28999 LOC_Os07g29580 expressed protein FN3094-S Chr7 17700001 17732000 0 0 Deletion 31999 LOC_Os07g30040 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 17700001 17732000 0 0 Deletion 31999 LOC_Os07g30050 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 17700001 17732000 0 0 Deletion 31999 LOC_Os07g30060 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 17700001 17732000 0 0 Deletion 31999 LOC_Os07g31210 OsWAK70 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed FN3094-S Chr7 18734 18753 0 0 Deletion 19 INTRON HOMO FN3094-S Chr7 19014001 19022000 0 0 Deletion 7999 LOC_Os07g32680 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 22291001 22316000 0 0 Deletion 24999 LOC_Os07g37210 MYB family transcription factor, putative, expressed FN3094-S Chr7 22291001 22316000 0 0 Deletion 24999 LOC_Os07g37220 inositol-1-monophosphatase, putative, expressed FN3094-S Chr7 22291001 22316000 0 0 Deletion 24999 LOC_Os07g37230 inositol-1-monophosphatase, putative, expressed FN3094-S Chr7 22681001 22767000 0 0 Deletion 85999 LOC_Os07g37820 expressed protein FN3094-S Chr7 22681001 22767000 0 0 Deletion 85999 LOC_Os07g37830 peptidyl-prolyl cis-trans isomerase CYP37, chloroplast precursor, putative, expressed FN3094-S Chr7 22681001 22767000 0 0 Deletion 85999 LOC_Os07g37840 lipase, putative, expressed FN3094-S Chr7 22681001 22767000 0 0 Deletion 85999 LOC_Os07g37850 expressed protein FN3094-S Chr7 22681001 22767000 0 0 Deletion 85999 LOC_Os07g37860 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 22681001 22767000 0 0 Deletion 85999 LOC_Os07g37870 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 22681001 22767000 0 0 Deletion 85999 LOC_Os07g37880 hypothetical protein FN3094-S Chr7 22681001 22767000 0 0 Deletion 85999 LOC_Os07g37890 protein phosphatase 2C, putative, expressed FN3094-S Chr7 22681001 22767000 0 0 Deletion 85999 LOC_Os07g37900 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 22681001 22767000 0 0 Deletion 85999 LOC_Os07g37910 expressed protein FN3094-S Chr7 22681001 22767000 0 0 Deletion 85999 LOC_Os07g37920 no apical meristem protein, putative, expressed FN3094-S Chr7 22681001 22767000 0 0 Deletion 85999 LOC_Os07g37930 expressed protein FN3094-S Chr7 22681001 22767000 0 0 Deletion 85999 LOC_Os07g37940 retrotransposon protein, putative, unclassified FN3094-S Chr7 23633001 23667000 0 0 Deletion 33999 LOC_Os07g39460 transposon protein, putative, unclassified, expressed FN3094-S Chr7 23633001 23667000 0 0 Deletion 33999 LOC_Os07g39470 gibberellin response modulator protein, putative, expressed FN3094-S Chr7 23633001 23667000 0 0 Deletion 33999 LOC_Os07g39480 WRKY87, expressed FN3094-S Chr7 23633001 23667000 0 0 Deletion 33999 LOC_Os07g39490 expressed protein FN3094-S Chr7 23811001 23844000 0 0 Deletion 32999 LOC_Os07g39740 GDSL-like lipase/acylhydrolase, putative, expressed FN3094-S Chr7 23811001 23844000 0 0 Deletion 32999 LOC_Os07g39750 GDSL-like lipase/acylhydrolase, putative, expressed FN3094-S Chr7 23811001 23844000 0 0 Deletion 32999 LOC_Os07g39760 expressed protein FN3094-S Chr7 23811001 23844000 0 0 Deletion 32999 LOC_Os07g39770 expressed protein FN3094-S Chr7 23811001 23844000 0 0 Deletion 32999 LOC_Os07g39780 SUMO-activating enzyme subunit 2, putative, expressed FN3094-S Chr7 23811001 23844000 0 0 Deletion 32999 LOC_Os07g39790 expressed protein FN3094-S Chr7 23811001 23844000 0 0 Deletion 32999 LOC_Os07g39800 transcription repressor HOTR, putative, expressed FN3094-S Chr7 25838001 25851000 0 0 Deletion 12999 LOC_Os07g43130 expressed protein FN3094-S Chr7 25838001 25851000 0 0 Deletion 12999 LOC_Os07g43140 VQ domain containing protein, putative, expressed FN3094-S Chr7 25838001 25851000 0 0 Deletion 12999 LOC_Os07g43150 hypothetical protein FN3094-S Chr7 25838001 25851000 0 0 Deletion 12999 LOC_Os07g44210 SNF2 family N-terminal domain containing protein, expressed FN3094-S Chr7 26636001 26655000 0 0 Deletion 18999 LOC_Os07g44650 LYR motif containing protein, putative, expressed FN3094-S Chr7 26636001 26655000 0 0 Deletion 18999 LOC_Os07g44660 FGGY family of carbohydrate kinases, putative, expressed FN3094-S Chr7 26636001 26655000 0 0 Deletion 18999 LOC_Os07g44670 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 26883001 26911000 0 0 Deletion 27999 LOC_Os07g45060 uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed FN3094-S Chr7 26883001 26911000 0 0 Deletion 27999 LOC_Os07g45064 Phosphatidylinositol kinase and FAT containing domain protein, putative, expressed FN3094-S Chr7 26883001 26911000 0 0 Deletion 27999 LOC_Os07g45070 FAT domain-containing protein, putative, expressed FN3094-S Chr7 26883001 26911000 0 0 Deletion 27999 LOC_Os07g45074 FAT domain-containing protein, putative, expressed FN3094-S Chr7 27046979 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3094-S Chr7 27304001 27318000 0 0 Deletion 13999 LOC_Os07g45740 expressed protein FN3094-S Chr7 27304001 27318000 0 0 Deletion 13999 LOC_Os07g45750 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 28807001 28830000 0 0 Deletion 22999 LOC_Os07g48244 ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed FN3094-S Chr7 28807001 28830000 0 0 Deletion 22999 LOC_Os07g48260 WRKY47, expressed FN3094-S Chr7 28807001 28830000 0 0 Deletion 22999 LOC_Os07g48602 EMB1011, putative, expressed FN3094-S Chr7 4248001 4272000 0 0 Deletion 23999 LOC_Os07g08320 RNA recognition motif containing protein, expressed FN3094-S Chr7 4248001 4272000 0 0 Deletion 23999 LOC_Os07g08330 ribosomal protein L4, putative, expressed FN3094-S Chr7 4248001 4272000 0 0 Deletion 23999 LOC_Os07g08340 pyruvate kinase, putative, expressed FN3094-S Chr7 4248001 4272000 0 0 Deletion 23999 LOC_Os07g08490 expressed protein FN3094-S Chr7 4826001 4888000 0 0 Deletion 61999 LOC_Os07g09200 expressed protein FN3094-S Chr7 4826001 4888000 0 0 Deletion 61999 LOC_Os07g09210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr7 4826001 4888000 0 0 Deletion 61999 LOC_Os07g09220 IPP transferase, putative, expressed FN3094-S Chr7 4826001 4888000 0 0 Deletion 61999 LOC_Os07g09230 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 4826001 4888000 0 0 Deletion 61999 LOC_Os07g09240 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 4826001 4888000 0 0 Deletion 61999 LOC_Os07g09250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr7 4826001 4888000 0 0 Deletion 61999 LOC_Os07g09270 expressed protein FN3094-S Chr7 4826001 4888000 0 0 Deletion 61999 LOC_Os07g09280 expressed protein FN3094-S Chr7 4826001 4888000 0 0 Deletion 61999 LOC_Os07g09290 hypothetical protein FN3094-S Chr7 4826001 4888000 0 0 Deletion 61999 LOC_Os07g09310 thioredoxin, putative, expressed FN3094-S Chr7 4826001 4888000 0 0 Deletion 61999 LOC_Os07g09320 FHA domain containing protein, putative, expressed FN3094-S Chr7 4843878 4843878 0 0 Insertion 1 frameshift_variant HET LOC_Os07g09240 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 4898009 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3094-S Chr7 5023001 5072000 0 0 Deletion 48999 LOC_Os07g09530 ankyrin repeat family protein, putative, expressed FN3094-S Chr7 5023001 5072000 0 0 Deletion 48999 LOC_Os07g09540 transposon protein, putative, CACTA, En/Spm sub-class FN3094-S Chr7 5023001 5072000 0 0 Deletion 48999 LOC_Os07g09560 ankyrin repeat family protein, putative, expressed FN3094-S Chr7 5023001 5072000 0 0 Deletion 48999 LOC_Os07g09570 hypothetical protein FN3094-S Chr7 5023001 5072000 0 0 Deletion 48999 LOC_Os07g09580 aminoacyl-tRNA synthetase, putative, expressed FN3094-S Chr7 5023001 5072000 0 0 Deletion 48999 LOC_Os07g10390 cleavage and polyadenylation specificity factor, putative, expressed FN3094-S Chr7 7282001 7304000 0 0 Deletion 21999 LOC_Os07g12750 retrotransposon protein, putative, unclassified FN3094-S Chr7 7282001 7304000 0 0 Deletion 21999 LOC_Os07g12760 hypothetical protein FN3094-S Chr7 7427001 7444000 0 0 Deletion 16999 LOC_Os07g12970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr7 7427001 7444000 0 0 Deletion 16999 LOC_Os07g13040 expressed protein FN3094-S Chr7 768001 790000 0 0 Deletion 21999 LOC_Os07g02310 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr7 768001 790000 0 0 Deletion 21999 LOC_Os07g02330 protein phosphatase 2C, putative, expressed FN3094-S Chr7 7842001 7912000 0 0 Deletion 69999 LOC_Os07g13690 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 7842001 7912000 0 0 Deletion 69999 LOC_Os07g13700 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 7842001 7912000 0 0 Deletion 69999 LOC_Os07g13710 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 7842001 7912000 0 0 Deletion 69999 LOC_Os07g13719 hypothetical protein FN3094-S Chr7 7842001 7912000 0 0 Deletion 69999 LOC_Os07g13728 hypothetical protein FN3094-S Chr7 7842001 7912000 0 0 Deletion 69999 LOC_Os07g13740 retrotransposon protein, putative, unclassified FN3094-S Chr7 7842001 7912000 0 0 Deletion 69999 LOC_Os07g13760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr7 7842001 7912000 0 0 Deletion 69999 LOC_Os07g13770 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed FN3094-S Chr7 7842001 7912000 0 0 Deletion 69999 LOC_Os07g13780 cytokinin-O-glucosyltransferase 2, putative, expressed FN3094-S Chr7 7842001 7912000 0 0 Deletion 69999 LOC_Os07g13790 hypothetical protein FN3094-S Chr7 7842001 7912000 0 0 Deletion 69999 LOC_Os07g13800 cytokinin-N-glucosyltransferase, putative, expressed FN3094-S Chr7 7842001 7912000 0 0 Deletion 69999 LOC_Os07g13810 cytokinin-N-glucosyltransferase 1, putative, expressed FN3094-S Chr7 8174001 8187000 0 0 Deletion 12999 LOC_Os07g14330 expressed protein FN3094-S Chr7 8174001 8187000 0 0 Deletion 12999 LOC_Os07g14710 transposon protein, putative, Mariner sub-class, expressed FN3094-S Chr7 8585877 8585877 0 0 Insertion 1 upstream_gene_variant HET FN3094-S Chr7 8590001 8622000 0 0 Deletion 31999 LOC_Os07g14980 retrotransposon protein, putative, unclassified FN3094-S Chr7 8590001 8622000 0 0 Deletion 31999 LOC_Os07g14990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr7 8590001 8622000 0 0 Deletion 31999 LOC_Os07g15000 expressed protein FN3094-S Chr7 8590001 8622000 0 0 Deletion 31999 LOC_Os07g15010 hypothetical protein FN3094-S Chr7 8590001 8622000 0 0 Deletion 31999 LOC_Os07g15020 expressed protein FN3094-S Chr7 8590001 8622000 0 0 Deletion 31999 LOC_Os07g15030 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 8590001 8622000 0 0 Deletion 31999 LOC_Os07g15250 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr7 8689344 8689353 0 0 Deletion 9 downstream_gene_variant HET FN3094-S Chr7 8794001 8813000 0 0 Deletion 18999 LOC_Os07g15260 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr7 8794001 8813000 0 0 Deletion 18999 LOC_Os07g15270 RNA-binding region RNP-1, putative, expressed FN3094-S Chr7 8794001 8813000 0 0 Deletion 18999 LOC_Os07g15280 expressed protein FN3094-S Chr7 8794001 8813000 0 0 Deletion 18999 LOC_Os07g15660 retrotransposon protein, putative, LINE subclass FN3094-S Chr7 9342439 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3094-S Chr7 9658001 9682000 0 0 Deletion 23999 LOC_Os07g16490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr7 9658001 9682000 0 0 Deletion 23999 LOC_Os07g16500 retrotransposon, putative, centromere-specific FN3094-S Chr7 9658001 9682000 0 0 Deletion 23999 LOC_Os07g16510 retrotransposon, putative, centromere-specific, expressed FN3094-S Chr8 10338113 10338114 0 0 Deletion 1 downstream_gene_variant HET FN3094-S Chr8 10892001 10912000 0 0 Deletion 19999 LOC_Os08g17770 expressed protein FN3094-S Chr8 10892001 10912000 0 0 Deletion 19999 LOC_Os08g17784 purple acid phosphatase, putative, expressed FN3094-S Chr8 10977001 10996000 0 0 Deletion 18999 LOC_Os08g17890 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr8 10977001 10996000 0 0 Deletion 18999 LOC_Os08g17900 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr8 10977001 10996000 0 0 Deletion 18999 LOC_Os08g17910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr8 10977001 10996000 0 0 Deletion 18999 LOC_Os08g17920 retrotransposon, putative, centromere-specific FN3094-S Chr8 11603001 11634000 0 0 Deletion 30999 LOC_Os08g19420 O-methyltransferase, putative, expressed FN3094-S Chr8 11603001 11634000 0 0 Deletion 30999 LOC_Os08g19440 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr8 11603001 11634000 0 0 Deletion 30999 LOC_Os08g19450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr8 11603001 11634000 0 0 Deletion 30999 LOC_Os08g19460 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr8 11603001 11634000 0 0 Deletion 30999 LOC_Os08g19470 expressed protein FN3094-S Chr8 12609001 12639000 0 0 Deletion 29999 LOC_Os08g21110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr8 12609001 12639000 0 0 Deletion 29999 LOC_Os08g21124 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr8 12609001 12639000 0 0 Deletion 29999 LOC_Os08g21140 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr8 14913149 Chr7 12309747 0 Translocation 0 LOC_Os07g22000 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr8 14913149 Chr7 12309747 0 Translocation 0 LOC_Os08g24680 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr8 15309001 15324000 0 0 Deletion 14999 LOC_Os08g25200 paired amphipathic helix repeat-containing protein, putative, expressed FN3094-S Chr8 15309001 15324000 0 0 Deletion 14999 LOC_Os08g25210 expressed protein FN3094-S Chr8 15309001 15324000 0 0 Deletion 14999 LOC_Os08g25220 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr8 15309001 15324000 0 0 Deletion 14999 LOC_Os08g25390 bifunctional aspartokinase/homoserine dehydrogenase, chloroplast precursor, putative, expressed FN3094-S Chr8 1544448 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g03330 expressed protein FN3094-S Chr8 15792001 15811000 0 0 Deletion 18999 LOC_Os08g25970 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr8 15792001 15811000 0 0 Deletion 18999 LOC_Os08g25980 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr8 15792001 15811000 0 0 Deletion 18999 LOC_Os08g26240 hypothetical protein FN3094-S Chr8 15854376 15854847 0 0 Inversion 471 LOC_Os08g26060 expressed protein FN3094-S Chr8 16005001 16031000 0 0 Deletion 25999 LOC_Os08g26260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr8 16005001 16031000 0 0 Deletion 25999 LOC_Os08g26270 expressed protein FN3094-S Chr8 16005001 16031000 0 0 Deletion 25999 LOC_Os08g26280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr8 16005001 16031000 0 0 Deletion 25999 LOC_Os08g26290 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr8 16402960 Chr2 11764396 0 Translocation 0 FN3094-S Chr8 17493337 Chr1 19783225 0 Translocation 0 LOC_Os08g28630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr8 17781001 17808000 0 0 Deletion 26999 LOC_Os08g29050 retrotransposon protein, putative, unclassified FN3094-S Chr8 17781001 17808000 0 0 Deletion 26999 LOC_Os08g29060 retrotransposon protein, putative, unclassified FN3094-S Chr8 17781001 17808000 0 0 Deletion 26999 LOC_Os08g29070 retrotransposon protein, putative, unclassified FN3094-S Chr8 17781001 17808000 0 0 Deletion 26999 LOC_Os08g29080 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr8 17781001 17808000 0 0 Deletion 26999 LOC_Os08g29530 double-stranded RNA binding motif containing protein, expressed FN3094-S Chr8 18104001 18123000 0 0 Deletion 18999 LOC_Os08g29530 double-stranded RNA binding motif containing protein, expressed FN3094-S Chr8 18104001 18123000 0 0 Deletion 18999 LOC_Os08g29540 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr8 18104001 18123000 0 0 Deletion 18999 LOC_Os08g29550 retrotransposon protein, putative, unclassified FN3094-S Chr8 18104001 18123000 0 0 Deletion 18999 LOC_Os08g29560 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr8 18649001 18674000 0 0 Deletion 24999 LOC_Os08g30310 transposon protein, putative, CACTA, En/Spm sub-class FN3094-S Chr8 18649001 18674000 0 0 Deletion 24999 LOC_Os08g30320 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr8 18649001 18674000 0 0 Deletion 24999 LOC_Os08g30330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr8 18844001 18862000 0 0 Deletion 17999 LOC_Os08g30590 C1-like domain containing protein, expressed FN3094-S Chr8 18844001 18862000 0 0 Deletion 17999 LOC_Os08g30600 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr8 19070001 19112000 0 0 Deletion 41999 LOC_Os08g30900 YDG/SRA domain containing protein, expressed FN3094-S Chr8 19070001 19112000 0 0 Deletion 41999 LOC_Os08g30910 YDG/SRA domain containing protein, expressed FN3094-S Chr8 19070001 19112000 0 0 Deletion 41999 LOC_Os08g30930 expressed protein FN3094-S Chr8 19070001 19112000 0 0 Deletion 41999 LOC_Os08g30940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr8 19070001 19112000 0 0 Deletion 41999 LOC_Os08g30950 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr8 21195001 21219000 0 0 Deletion 23999 LOC_Os08g33860 zinc finger, C3HC4 type, putative, expressed FN3094-S Chr8 21195001 21219000 0 0 Deletion 23999 LOC_Os08g33870 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr8 21195001 21219000 0 0 Deletion 23999 LOC_Os08g33880 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed FN3094-S Chr8 21195001 21219000 0 0 Deletion 23999 LOC_Os08g33890 expressed protein FN3094-S Chr8 21195001 21219000 0 0 Deletion 23999 LOC_Os08g33900 CAAX amino terminal protease family protein, putative, expressed FN3094-S Chr8 21195001 21219000 0 0 Deletion 23999 LOC_Os08g33910 no apical meristem protein, putative, expressed FN3094-S Chr8 23051001 23073000 0 0 Deletion 21999 LOC_Os08g36500 nitrate reductase, putative, expressed FN3094-S Chr8 23051001 23073000 0 0 Deletion 21999 LOC_Os08g36510 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr8 23051001 23073000 0 0 Deletion 21999 LOC_Os08g36520 peptidase aspartic family protein, putative, expressed FN3094-S Chr8 23051001 23073000 0 0 Deletion 21999 LOC_Os08g36530 aspartic proteinase nepenthesin precursor, putative, expressed FN3094-S Chr8 23051001 23073000 0 0 Deletion 21999 LOC_Os08g36540 aspartic proteinase nepenthesin-1 precursor, putative, expressed FN3094-S Chr8 23051001 23073000 0 0 Deletion 21999 LOC_Os08g36550 salt tolerant protein, putative, expressed FN3094-S Chr8 23762001 23795000 0 0 Deletion 32999 LOC_Os08g37520 pentatricopeptide, putative, expressed FN3094-S Chr8 23762001 23795000 0 0 Deletion 32999 LOC_Os08g37530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr8 23762001 23795000 0 0 Deletion 32999 LOC_Os08g37540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr8 23762001 23795000 0 0 Deletion 32999 LOC_Os08g37550 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr8 23762001 23795000 0 0 Deletion 32999 LOC_Os08g37560 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr8 23762001 23795000 0 0 Deletion 32999 LOC_Os08g37570 spotted leaf 11, putative, expressed FN3094-S Chr8 24073956 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3094-S Chr8 24731001 24757000 0 0 Deletion 25999 LOC_Os08g39160 formyl transferase, putative, expressed FN3094-S Chr8 24731001 24757000 0 0 Deletion 25999 LOC_Os08g39170 expressed protein FN3094-S Chr8 24731001 24757000 0 0 Deletion 25999 LOC_Os08g39174 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr8 24731001 24757000 0 0 Deletion 25999 LOC_Os08g39180 OsWAK73 - OsWAK receptor-like protein kinase, expressed FN3094-S Chr8 25751367 Chr6 17039665 0 Translocation 0 FN3094-S Chr8 27272001 27286000 0 0 Deletion 13999 LOC_Os08g43130 NAP1, putative, expressed FN3094-S Chr8 27272001 27286000 0 0 Deletion 13999 LOC_Os08g43360 RNA recognition motif containing protein, putative, expressed FN3094-S Chr8 27472247 27472247 0 0 Insertion 10 downstream_gene_variant HET FN3094-S Chr8 3957001 3995000 0 0 Deletion 37999 LOC_Os08g07090 expressed protein FN3094-S Chr8 3957001 3995000 0 0 Deletion 37999 LOC_Os08g07100 terpene synthase, putative, expressed FN3094-S Chr8 3957001 3995000 0 0 Deletion 37999 LOC_Os08g07120 terpene synthase, putative, expressed FN3094-S Chr8 3957001 3995000 0 0 Deletion 37999 LOC_Os08g07130 transposon protein, putative, unclassified, expressed FN3094-S Chr8 3957001 3995000 0 0 Deletion 37999 LOC_Os08g07560 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr8 5081001 5096000 0 0 Deletion 14999 LOC_Os08g08770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr8 5081001 5096000 0 0 Deletion 14999 LOC_Os08g08780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr8 5081001 5096000 0 0 Deletion 14999 LOC_Os08g08790 ubiquitin family protein, putative, expressed FN3094-S Chr8 5081001 5096000 0 0 Deletion 14999 LOC_Os08g09110 NB-ARC domain containing protein, expressed FN3094-S Chr8 5256478 5256478 0 0 Insertion 2 FRAME_SHIFT HET LOC_Os08g09050 expressed protein FN3094-S Chr8 561001 584000 0 0 Deletion 22999 LOC_Os08g01930 KH domain-containing protein, putative, expressed FN3094-S Chr8 561001 584000 0 0 Deletion 22999 LOC_Os08g01940 non-lysosomal glucosylceramidase, putative, expressed FN3094-S Chr8 561001 584000 0 0 Deletion 22999 LOC_Os08g02270 hypothetical protein FN3094-S Chr8 5637001 5653000 0 0 Deletion 15999 LOC_Os08g09770 DnaK family protein, putative, expressed FN3094-S Chr8 5637001 5653000 0 0 Deletion 15999 LOC_Os08g09780 expressed protein FN3094-S Chr8 5637001 5653000 0 0 Deletion 15999 LOC_Os08g10150 SHR5-receptor-like kinase, putative, expressed FN3094-S Chr8 7058001 7093000 0 0 Deletion 34999 LOC_Os08g12020 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr8 7058001 7093000 0 0 Deletion 34999 LOC_Os08g12040 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr8 7058001 7093000 0 0 Deletion 34999 LOC_Os08g12050 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr8 8049001 8073000 0 0 Deletion 23999 LOC_Os08g13550 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr8 8049001 8073000 0 0 Deletion 23999 LOC_Os08g13560 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr8 8049001 8073000 0 0 Deletion 23999 LOC_Os08g13570 exo70 exocyst complex subunit family protein, putative, expressed FN3094-S Chr8 8049001 8073000 0 0 Deletion 23999 LOC_Os08g13580 transposon protein, putative, unclassified, expressed FN3094-S Chr8 8049001 8073000 0 0 Deletion 23999 LOC_Os08g13960 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr8 9529001 9566000 0 0 Deletion 36999 LOC_Os08g15710 DC1 domain, putative, expressed FN3094-S Chr8 9529001 9566000 0 0 Deletion 36999 LOC_Os08g15720 retrotransposon protein, putative, LINE subclass, expressed FN3094-S Chr8 9529001 9566000 0 0 Deletion 36999 LOC_Os08g15730 hypothetical protein FN3094-S Chr8 9529001 9566000 0 0 Deletion 36999 LOC_Os08g15740 conserved hypothetical protein FN3094-S Chr8 9529001 9566000 0 0 Deletion 36999 LOC_Os08g15750 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr8 9529001 9566000 0 0 Deletion 36999 LOC_Os08g15760 transposon protein, putative, CACTA, En/Spm sub-class FN3094-S Chr8 9529001 9566000 0 0 Deletion 36999 LOC_Os08g15770 expressed protein FN3094-S Chr8 9529001 9566000 0 0 Deletion 36999 LOC_Os08g15780 DC1 domain, putative, expressed FN3094-S Chr8 9843001 9869000 0 0 Deletion 25999 LOC_Os08g16150 expressed protein FN3094-S Chr8 9843001 9869000 0 0 Deletion 25999 LOC_Os08g16160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr8 9843001 9869000 0 0 Deletion 25999 LOC_Os08g16170 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr8 9843001 9869000 0 0 Deletion 25999 LOC_Os08g16180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr8 9883001 9907000 0 0 Deletion 23999 LOC_Os08g16220 transposon protein, putative, CACTA, En/Spm sub-class FN3094-S Chr8 9883001 9907000 0 0 Deletion 23999 LOC_Os08g16230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr8 9883001 9907000 0 0 Deletion 23999 LOC_Os08g16240 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr8 9883001 9907000 0 0 Deletion 23999 LOC_Os08g16270 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr9 10304001 10320000 0 0 Deletion 15999 LOC_Os09g16880 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr9 10304001 10320000 0 0 Deletion 15999 LOC_Os09g16890 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr9 10304001 10320000 0 0 Deletion 15999 LOC_Os09g17910 expressed protein FN3094-S Chr9 10595127 10595131 0 0 Deletion 4 upstream_gene_variant HET FN3094-S Chr9 10810508 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g17680 NAD kinase, putative, expressed FN3094-S Chr9 11022001 11052000 0 0 Deletion 29999 LOC_Os09g18010 expressed protein FN3094-S Chr9 11022001 11052000 0 0 Deletion 29999 LOC_Os09g18020 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN3094-S Chr9 11714001 11730000 0 0 Deletion 15999 LOC_Os09g19590 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr9 11714001 11730000 0 0 Deletion 15999 LOC_Os09g19600 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr9 11714001 11730000 0 0 Deletion 15999 LOC_Os09g19610 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr9 11714001 11730000 0 0 Deletion 15999 LOC_Os09g19620 retrotransposon protein, putative, unclassified FN3094-S Chr9 11714001 11730000 0 0 Deletion 15999 LOC_Os09g21160 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed FN3094-S Chr9 1192001 1207000 0 0 Deletion 14999 LOC_Os09g02690 expressed protein FN3094-S Chr9 1192001 1207000 0 0 Deletion 14999 LOC_Os09g02960 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr9 12844001 12872000 0 0 Deletion 27999 LOC_Os09g21290 expressed protein FN3094-S Chr9 12844001 12872000 0 0 Deletion 27999 LOC_Os09g21310 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr9 12844001 12872000 0 0 Deletion 27999 LOC_Os09g21320 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr9 12844001 12872000 0 0 Deletion 27999 LOC_Os09g21330 expressed protein FN3094-S Chr9 13321001 13346000 0 0 Deletion 24999 LOC_Os09g22000 hydrolase, HAD superfamily, Cof family, putative, expressed FN3094-S Chr9 13321001 13346000 0 0 Deletion 24999 LOC_Os09g22010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr9 13321001 13346000 0 0 Deletion 24999 LOC_Os09g22020 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr9 13321001 13346000 0 0 Deletion 24999 LOC_Os09g22030 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr9 13388001 13451000 0 0 Deletion 62999 LOC_Os09g22100 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr9 13388001 13451000 0 0 Deletion 62999 LOC_Os09g22110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr9 13388001 13451000 0 0 Deletion 62999 LOC_Os09g22120 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr9 13388001 13451000 0 0 Deletion 62999 LOC_Os09g22130 expressed protein FN3094-S Chr9 13388001 13451000 0 0 Deletion 62999 LOC_Os09g22140 expressed protein FN3094-S Chr9 13388001 13451000 0 0 Deletion 62999 LOC_Os09g22150 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr9 13388001 13451000 0 0 Deletion 62999 LOC_Os09g22160 expressed protein FN3094-S Chr9 13388001 13451000 0 0 Deletion 62999 LOC_Os09g22170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr9 13388001 13451000 0 0 Deletion 62999 LOC_Os09g22190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr9 13388001 13451000 0 0 Deletion 62999 LOC_Os09g22200 transposon protein, putative, CACTA, En/Spm sub-class FN3094-S Chr9 13388001 13451000 0 0 Deletion 62999 LOC_Os09g22210 retrotransposon, putative, centromere-specific, expressed FN3094-S Chr9 13388001 13451000 0 0 Deletion 62999 LOC_Os09g22220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr9 13388001 13451000 0 0 Deletion 62999 LOC_Os09g22230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr9 13388001 13451000 0 0 Deletion 62999 LOC_Os09g22240 hypothetical protein FN3094-S Chr9 1349112 1349112 0 0 Insertion 2 INTERGENIC HET FN3094-S Chr9 1389001 1403000 0 0 Deletion 13999 LOC_Os09g02970 retrotransposon protein, putative, unclassified FN3094-S Chr9 1389001 1403000 0 0 Deletion 13999 LOC_Os09g02980 retrotransposon protein, putative, Ty1-copia subclass FN3094-S Chr9 1389001 1403000 0 0 Deletion 13999 LOC_Os09g02990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr9 1389001 1403000 0 0 Deletion 13999 LOC_Os09g03370 MIM, putative, expressed FN3094-S Chr9 13993865 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3094-S Chr9 14334102 14334102 0 0 Insertion 1 upstream_gene_variant HET FN3094-S Chr9 1637001 1711000 0 0 Deletion 73999 LOC_Os09g03370 MIM, putative, expressed FN3094-S Chr9 1637001 1711000 0 0 Deletion 73999 LOC_Os09g03380 transposon protein, putative, Mutator sub-class, expressed FN3094-S Chr9 1637001 1711000 0 0 Deletion 73999 LOC_Os09g03390 expressed protein FN3094-S Chr9 1637001 1711000 0 0 Deletion 73999 LOC_Os09g03400 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr9 1637001 1711000 0 0 Deletion 73999 LOC_Os09g03410 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr9 1637001 1711000 0 0 Deletion 73999 LOC_Os09g03420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr9 1637001 1711000 0 0 Deletion 73999 LOC_Os09g03430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr9 1637001 1711000 0 0 Deletion 73999 LOC_Os09g03440 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr9 1637001 1711000 0 0 Deletion 73999 LOC_Os09g03450 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr9 1637001 1711000 0 0 Deletion 73999 LOC_Os09g03460 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr9 1637001 1711000 0 0 Deletion 73999 LOC_Os09g03470 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr9 20899001 20947000 0 0 Deletion 47999 LOC_Os09g36244 expressed protein FN3094-S Chr9 20899001 20947000 0 0 Deletion 47999 LOC_Os09g36250 MYB family transcription factor, putative, expressed FN3094-S Chr9 20899001 20947000 0 0 Deletion 47999 LOC_Os09g36260 expressed protein FN3094-S Chr9 20899001 20947000 0 0 Deletion 47999 LOC_Os09g36270 pantothenate kinase, putative, expressed FN3094-S Chr9 20899001 20947000 0 0 Deletion 47999 LOC_Os09g36280 glycosyl hydrolases family 17, putative, expressed FN3094-S Chr9 20899001 20947000 0 0 Deletion 47999 LOC_Os09g36290 Ser/Thr protein phosphatase family protein, putative, expressed FN3094-S Chr9 20899001 20947000 0 0 Deletion 47999 LOC_Os09g36300 OsLonP4 - Putative Lon protease homologue, expressed FN3094-S Chr9 21495001 21511000 0 0 Deletion 15999 LOC_Os09g37240 glutathione S-transferase, C-terminal domain containing protein, expressed FN3094-S Chr9 2287221 2287222 0 0 Deletion 1 upstream_gene_variant HET FN3094-S Chr9 2973771 Chr3 25081980 0 Translocation 0 LOC_Os03g44550 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr9 3236001 3267000 0 0 Deletion 30999 LOC_Os09g06780 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr9 3236001 3267000 0 0 Deletion 30999 LOC_Os09g06790 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr9 3236001 3267000 0 0 Deletion 30999 LOC_Os09g06800 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr9 3236001 3267000 0 0 Deletion 30999 LOC_Os09g06810 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr9 3236001 3267000 0 0 Deletion 30999 LOC_Os09g06820 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr9 3236001 3267000 0 0 Deletion 30999 LOC_Os09g06830 hypothetical protein FN3094-S Chr9 3236001 3267000 0 0 Deletion 30999 LOC_Os09g06880 retrotransposon protein, putative, unclassified FN3094-S Chr9 3301001 3335000 0 0 Deletion 33999 LOC_Os09g06890 BTB/POZ domain containing protein, expressed FN3094-S Chr9 3301001 3335000 0 0 Deletion 33999 LOC_Os09g06900 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr9 3301001 3335000 0 0 Deletion 33999 LOC_Os09g06910 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr9 3581001 3606000 0 0 Deletion 24999 LOC_Os09g07294 purity of essence, putative, expressed FN3094-S Chr9 3581001 3606000 0 0 Deletion 24999 LOC_Os09g07300 BIG, putative, expressed FN3094-S Chr9 3581001 3606000 0 0 Deletion 24999 LOC_Os09g07780 pentatricopeptide repeat protein PPR986-12, putative, expressed FN3094-S Chr9 3997001 4035000 0 0 Deletion 37999 LOC_Os09g07860 retrotransposon protein, putative, unclassified FN3094-S Chr9 3997001 4035000 0 0 Deletion 37999 LOC_Os09g07870 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr9 3997001 4035000 0 0 Deletion 37999 LOC_Os09g07880 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr9 3997001 4035000 0 0 Deletion 37999 LOC_Os09g07890 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr9 3997001 4035000 0 0 Deletion 37999 LOC_Os09g07900 ubiquitin-protein ligase 1, putative, expressed FN3094-S Chr9 4233001 4252000 0 0 Deletion 18999 LOC_Os09g08180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr9 4233001 4252000 0 0 Deletion 18999 LOC_Os09g08190 sulfotransferase domain containing protein, expressed FN3094-S Chr9 4233001 4252000 0 0 Deletion 18999 LOC_Os09g08340 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr9 4918865 4918866 0 0 Deletion 1 upstream_gene_variant HET FN3094-S Chr9 609001 623000 0 0 Deletion 13999 LOC_Os09g01910 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr9 6120001 6165000 0 0 Deletion 44999 LOC_Os09g11020 NBS-LRR disease resistance protein, putative, expressed FN3094-S Chr9 6120001 6165000 0 0 Deletion 44999 LOC_Os09g11030 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr9 6120001 6165000 0 0 Deletion 44999 LOC_Os09g11040 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr9 6120001 6165000 0 0 Deletion 44999 LOC_Os09g11050 expressed protein FN3094-S Chr9 6120001 6165000 0 0 Deletion 44999 LOC_Os09g11060 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr9 6120001 6165000 0 0 Deletion 44999 LOC_Os09g11070 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr9 6120001 6165000 0 0 Deletion 44999 LOC_Os09g11080 retrotransposon protein, putative, Ty3-gypsy subclass FN3094-S Chr9 6120001 6165000 0 0 Deletion 44999 LOC_Os09g11090 expressed protein FN3094-S Chr9 6120001 6165000 0 0 Deletion 44999 LOC_Os09g11100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr9 6120001 6165000 0 0 Deletion 44999 LOC_Os09g11110 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr9 6357001 6377000 0 0 Deletion 19999 LOC_Os09g11440 expressed protein FN3094-S Chr9 6357001 6377000 0 0 Deletion 19999 LOC_Os09g11450 transporter, monovalent cation:proton antiporter-2 family, putative, expressed FN3094-S Chr9 6357001 6377000 0 0 Deletion 19999 LOC_Os09g11850 ulp1 protease family, C-terminal catalytic domain containing protein, expressed FN3094-S Chr9 6643001 6742000 0 0 Deletion 98999 LOC_Os09g11850 ulp1 protease family, C-terminal catalytic domain containing protein, expressed FN3094-S Chr9 6643001 6742000 0 0 Deletion 98999 LOC_Os09g11860 ulp1 protease family, C-terminal catalytic domain containing protein, expressed FN3094-S Chr9 6643001 6742000 0 0 Deletion 98999 LOC_Os09g11870 transposon protein, putative, unclassified, expressed FN3094-S Chr9 6643001 6742000 0 0 Deletion 98999 LOC_Os09g11880 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr9 6643001 6742000 0 0 Deletion 98999 LOC_Os09g11890 expressed protein FN3094-S Chr9 6643001 6742000 0 0 Deletion 98999 LOC_Os09g11900 expressed protein FN3094-S Chr9 6643001 6742000 0 0 Deletion 98999 LOC_Os09g11910 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr9 6643001 6742000 0 0 Deletion 98999 LOC_Os09g11920 transposon protein, putative, unclassified, expressed FN3094-S Chr9 6643001 6742000 0 0 Deletion 98999 LOC_Os09g11930 expressed protein FN3094-S Chr9 6643001 6742000 0 0 Deletion 98999 LOC_Os09g11940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr9 6643001 6742000 0 0 Deletion 98999 LOC_Os09g11950 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr9 6643001 6742000 0 0 Deletion 98999 LOC_Os09g11960 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr9 683001 696000 0 0 Deletion 12999 LOC_Os09g01990 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr9 683001 696000 0 0 Deletion 12999 LOC_Os09g02000 expressed protein FN3094-S Chr9 683001 696000 0 0 Deletion 12999 LOC_Os09g02670 expressed protein FN3094-S Chr9 7154001 7173000 0 0 Deletion 18999 LOC_Os09g12500 EMB1381, putative, expressed FN3094-S Chr9 7154001 7173000 0 0 Deletion 18999 LOC_Os09g12510 expressed protein FN3094-S Chr9 8066001 8084000 0 0 Deletion 17999 LOC_Os09g13780 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr9 8066001 8084000 0 0 Deletion 17999 LOC_Os09g13790 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3094-S Chr9 8066001 8084000 0 0 Deletion 17999 LOC_Os09g14040 transposon protein, putative, unclassified, expressed FN3094-S Chr9 9098001 9192000 0 0 Deletion 93999 LOC_Os09g15060 expressed protein FN3094-S Chr9 9098001 9192000 0 0 Deletion 93999 LOC_Os09g15070 expressed protein FN3094-S Chr9 9098001 9192000 0 0 Deletion 93999 LOC_Os09g15090 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3094-S Chr9 9098001 9192000 0 0 Deletion 93999 LOC_Os09g15100 retrotransposon protein, putative, unclassified, expressed FN3094-S Chr9 9098001 9192000 0 0 Deletion 93999 LOC_Os09g15120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr9 9098001 9192000 0 0 Deletion 93999 LOC_Os09g15130 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3094-S Chr9 9098001 9192000 0 0 Deletion 93999 LOC_Os09g15140 retrotransposon protein, putative, unclassified, expressed