FN3095-S Chr1 14444388 14444396 0 0 Deletion 8 Homo FN3095-S Chr1 15284287 15284288 0 0 Deletion 1 frameshift_variant Homo LOC_Os01g27370 expressed protein FN3095-S Chr1 15613769 15613795 0 0 Deletion 26 frameshift_variant Homo LOC_Os01g27930 retrotransposon protein, putative, unclassified, expressed FN3095-S Chr1 16964344 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g31020 retrotransposon protein, putative, unclassified, expressed FN3095-S Chr1 23705579 C-T 0 0 Single Base Substitution 0 HET FN3095-S Chr1 24000327 G-A 0 0 Single Base Substitution 0 HET FN3095-S Chr1 26880678 26880679 0 0 Deletion 1 HET FN3095-S Chr1 32160332 A-G 0 0 Single Base Substitution 0 Homo FN3095-S Chr1 8795404 A-G 0 0 Single Base Substitution 0 Homo FN3095-S Chr10 10600041 G-T 0 0 Single Base Substitution 0 Homo FN3095-S Chr10 11271297 11271299 0 0 Deletion 2 HET FN3095-S Chr10 22724601 22724610 0 0 Deletion 9 HET FN3095-S Chr10 5985524 5985525 0 0 Insertion 1 HET FN3095-S Chr10 6894674 G-T 0 0 Single Base Substitution 0 HET FN3095-S Chr11 13841868 G-A 0 0 Single Base Substitution 0 HET FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28340 ER lumen protein retaining receptor, putative, expressed FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28350 CDK-activating kinase assembly factor MAT1 family protein, expressed FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28360 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28365 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28370 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28380 expressed protein FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28390 expressed protein FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28400 retrotransposon protein, putative, unclassified, expressed FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28410 retrotransposon protein, putative, unclassified, expressed FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28430 expressed protein FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28440 retrotransposon protein, putative, Ty1-copia subclass FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28450 hypothetical protein FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28460 expressed protein FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28470 expressed protein FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28480 expressed protein FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28490 ent-kaurene synthase B, chloroplast precursor, putative, expressed FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28500 terpene synthase, N-terminal domain containing protein FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28510 expressed protein FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28520 retrotransposon protein, putative, unclassified, expressed FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28530 terpene synthase, putative, expressed FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28540 expressed protein FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28550 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28560 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28590 retrotransposon protein, putative, Ty1-copia subclass FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28600 expressed protein FN3095-S Chr11 16298001 16533000 0 0 Deletion 234999 LOC_Os11g28610 transporter family protein, putative, expressed FN3095-S Chr11 917344 C-T 0 0 Single Base Substitution 0 HET FN3095-S Chr12 11045513 G-A 0 0 Single Base Substitution 0 Homo FN3095-S Chr12 11348725 Chr3 20767126 0 Translocation 0 FN3095-S Chr12 11348725 Chr3 20767126 0 Translocation 0 LOC_Os03g37450 expressed protein FN3095-S Chr12 22929920 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g37340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3095-S Chr12 23274730 23274735 0 0 Deletion 5 HET FN3095-S Chr12 4914300 4914305 0 0 Deletion 5 HET FN3095-S Chr12 7765420 Chr1 1946546 0 Translocation 0 FN3095-S Chr2 16249004 16249014 0 0 Deletion 10 Homo FN3095-S Chr2 20526926 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os02g34300 transposon protein, putative, unclassified, expressed FN3095-S Chr2 26444324 26444333 0 0 Deletion 9 inframe_deletion HET LOC_Os02g43810 expressed protein FN3095-S Chr2 2711735 2711736 0 0 Deletion 1 HET FN3095-S Chr2 30755526 30755534 0 0 Deletion 8 frameshift_variant HET LOC_Os02g50360 nicalin, putative, expressed FN3095-S Chr2 35040046 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g57190 Myosin head domain containing protein, expressed FN3095-S Chr2 4668547 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g09100 isoleucyl-tRNA synthetase, cytoplasmic, putative, expressed FN3095-S Chr2 5391343 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g10270 retrotransposon protein, putative, unclassified, expressed FN3095-S Chr2 999601 G-A 0 0 Single Base Substitution 0 HET FN3095-S Chr3 16078768 16078770 0 0 Insertion 2 HET FN3095-S Chr3 22607747 C-T 0 0 Single Base Substitution 0 Homo FN3095-S Chr3 25287298 G-A 0 0 Single Base Substitution 0 Homo FN3095-S Chr4 29286842 C-T 0 0 Single Base Substitution 0 HET FN3095-S Chr4 33176870 33176885 0 0 Deletion 15 HET FN3095-S Chr4 33608480 G-T 0 0 Single Base Substitution 0 HET FN3095-S Chr4 9399637 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g17140 retrotransposon, putative, centromere-specific, expressed FN3095-S Chr5 12178208 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os05g20750 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3095-S Chr5 22445907 C-T 0 0 Single Base Substitution 0 HET FN3095-S Chr6 28718710 28718716 0 0 Deletion 6 disruptive_inframe_deletion HET LOC_Os06g47380 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3095-S Chr7 12229819 12229820 0 0 Deletion 1 HET FN3095-S Chr7 16549786 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g28350 expressed protein FN3095-S Chr7 19538779 19538781 0 0 Deletion 2 HET FN3095-S Chr8 14097393 C-T 0 0 Single Base Substitution 0 HET FN3095-S Chr8 18291228 G-C 0 0 Single Base Substitution 0 HET FN3095-S Chr8 20887246 20887260 0 0 Deletion 14 Homo FN3095-S Chr8 462076 G-A 0 0 Single Base Substitution 0 HET FN3095-S Chr8 462503 C-T 0 0 Single Base Substitution 0 HET FN3095-S Chr8 6006970 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g10304 expressed protein FN3095-S Chr9 11286411 Chr3 23642999 0 Translocation 0 FN3095-S Chr9 11286506 Chr3 23642999 0 Translocation 0 FN3095-S Chr9 13114440 13114441 0 0 Deletion 1 Homo FN3095-S Chr9 22796656 22796664 0 0 Deletion 8 splice_acceptor_variant&splice_region_variant&intron_variant HET LOC_Os09g39740 ACT domain containing protein, expressed FN3095-S Chr9 697599 G-A 0 0 Single Base Substitution 0 HET