FN3114-S Chr1 11533446 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3114-S Chr1 12528708 12528709 0 0 Deletion 1 upstream_gene_variant HET FN3114-S Chr1 16473133 T-C 0 0 Single Base Substitution 0 INTRON HET FN3114-S Chr1 22477851 22477851 0 0 Insertion 12 upstream_gene_variant HET FN3114-S Chr1 24522366 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3114-S Chr1 31523224 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3114-S Chr1 34062155 34062155 0 0 Insertion 1 upstream_gene_variant HET FN3114-S Chr10 11197651 11197652 0 0 Deletion 1 INTRON HOMO FN3114-S Chr10 2038263 2038264 0 0 Deletion 1 intron_variant HET FN3114-S Chr10 3386842 3386908 0 0 Deletion 66 intergenic_region HET FN3114-S Chr10 711001 773000 0 0 Deletion 61999 LOC_Os10g02140 expressed protein FN3114-S Chr10 711001 773000 0 0 Deletion 61999 LOC_Os10g02150 retrotransposon protein, putative, unclassified, expressed FN3114-S Chr10 711001 773000 0 0 Deletion 61999 LOC_Os10g02160 retrotransposon protein, putative, unclassified FN3114-S Chr10 711001 773000 0 0 Deletion 61999 LOC_Os10g02170 retrotransposon protein, putative, unclassified, expressed FN3114-S Chr10 711001 773000 0 0 Deletion 61999 LOC_Os10g02180 retrotransposon protein, putative, unclassified FN3114-S Chr10 711001 773000 0 0 Deletion 61999 LOC_Os10g02190 retrotransposon protein, putative, unclassified, expressed FN3114-S Chr10 711001 773000 0 0 Deletion 61999 LOC_Os10g02200 retrotransposon protein, putative, Ty3-gypsy subclass FN3114-S Chr10 711001 773000 0 0 Deletion 61999 LOC_Os10g02210 peptide transporter PTR2, putative, expressed FN3114-S Chr10 711001 773000 0 0 Deletion 61999 LOC_Os10g02220 peptide transporter PTR2, putative, expressed FN3114-S Chr11 13425019 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3114-S Chr11 14854010 14854010 0 0 Insertion 2 INTERGENIC HET FN3114-S Chr11 22922628 Chr1 18021449 0 Translocation 0 FN3114-S Chr11 27324436 27324436 0 0 Insertion 1 downstream_gene_variant HET FN3114-S Chr11 27751458 27751458 0 0 Insertion 2 upstream_gene_variant HET FN3114-S Chr11 2816084 2816085 0 0 Deletion 1 UTR_3_PRIME HET FN3114-S Chr11 8477052 8477055 0 0 Deletion 3 INTERGENIC HET FN3114-S Chr11 8509984 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3114-S Chr12 10782367 Chr3 13360872 0 Translocation 0 FN3114-S Chr12 13362065 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g23580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3114-S Chr12 14730710 14730711 0 0 Deletion 1 upstream_gene_variant HET FN3114-S Chr12 175403 175404 0 0 Deletion 1 upstream_gene_variant HET FN3114-S Chr12 25289270 25289270 0 0 Insertion 4 upstream_gene_variant HET FN3114-S Chr12 26181699 26181699 0 0 Insertion 6 downstream_gene_variant HET FN3114-S Chr12 3375375 3375375 0 0 Insertion 8 upstream_gene_variant HET FN3114-S Chr2 15397256 15397256 0 0 Insertion 10 upstream_gene_variant HET FN3114-S Chr2 15957072 C-A 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN3114-S Chr2 18680854 18680854 0 0 Insertion 1 frameshift_variant HET LOC_Os02g31190 retrotransposon protein, putative, unclassified, expressed FN3114-S Chr2 23462049 23462050 0 0 Deletion 1 downstream_gene_variant HET FN3114-S Chr2 30370446 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3114-S Chr2 30784913 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3114-S Chr2 30784914 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3114-S Chr2 33662187 33662188 0 0 Deletion 1 upstream_gene_variant HET FN3114-S Chr2 7563747 C-A 0 0 Single Base Substitution 0 INTRON HET FN3114-S Chr2 9975427 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os02g17350 VHS and GAT domain containing protein, expressed FN3114-S Chr3 5025402 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3114-S Chr3 6782051 Chr2 26075049 0 Translocation 0 FN3114-S Chr4 11713821 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3114-S Chr4 11974491 11974491 0 0 Insertion 1 upstream_gene_variant HET FN3114-S Chr4 13900937 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3114-S Chr4 18977179 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3114-S Chr4 22924877 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3114-S Chr4 7017770 7017770 0 0 Insertion 2 intron_variant HET FN3114-S Chr5 11021168 C-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os05g18990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3114-S Chr5 27816315 27816316 0 0 Deletion 1 upstream_gene_variant HET FN3114-S Chr5 381977 403586 0 0 Inversion 21609 FN3114-S Chr5 7548020 7548065 0 0 Deletion 45 upstream_gene_variant HET FN3114-S Chr6 10773494 Chr5 5501080 0 Translocation 0 LOC_Os06g18950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3114-S Chr6 10780459 Chr5 5501078 0 Translocation 0 FN3114-S Chr6 13339335 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3114-S Chr6 15015612 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g25710 retrotransposon protein, putative, unclassified, expressed FN3114-S Chr6 15015613 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3114-S Chr6 15027905 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3114-S Chr6 15027925 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g25730 retrotransposon protein, putative, unclassified, expressed FN3114-S Chr6 1600577 A-T 0 0 Single Base Substitution 0 INTRON HET FN3114-S Chr6 16806983 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3114-S Chr6 21657633 Chr4 17923009 0 Translocation 0 FN3114-S Chr6 21735269 C-T 0 0 Single Base Substitution 0 INTRON HET FN3114-S Chr6 22187087 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3114-S Chr6 23107570 23107571 0 0 Deletion 1 SPLICE_SITE_REGION HET FN3114-S Chr6 27345951 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3114-S Chr6 28212026 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3114-S Chr6 8691711 8691712 0 0 Deletion 1 upstream_gene_variant HET FN3114-S Chr7 1145023 1145024 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os07g03030 expressed protein FN3114-S Chr7 12686440 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3114-S Chr7 14403650 14403668 0 0 Deletion 18 INTERGENIC HOMO FN3114-S Chr7 17019131 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3114-S Chr7 1792841 1792841 0 0 Insertion 10 INTRON HET FN3114-S Chr7 19503989 19503991 0 0 Deletion 2 SPLICE_SITE_REGION HET FN3114-S Chr7 23128339 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3114-S Chr7 2372212 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3114-S Chr7 28854777 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3114-S Chr7 4884972 C-A 0 0 Single Base Substitution 0 INTRON HET FN3114-S Chr7 6255180 Chr5 24807575 0 Translocation 0 LOC_Os07g11360 RAL3 - Seed allergenic protein RA5/RA14/RA17 precursor, expressed FN3114-S Chr8 15070088 15070091 0 0 Deletion 3 3_prime_UTR_variant HET FN3114-S Chr8 20761898 21094605 0 0 Inversion 332707 LOC_Os08g33300 cytochrome P450 72A1, putative, expressed FN3114-S Chr8 20762001 20799000 0 0 Deletion 36999 LOC_Os08g33320 expressed protein FN3114-S Chr8 20762001 20799000 0 0 Deletion 36999 LOC_Os08g33330 protein kinase PKN/PRK1, effector, putative, expressed FN3114-S Chr8 20762001 20799000 0 0 Deletion 36999 LOC_Os08g33340 RAD23 DNA repair protein, putative, expressed FN3114-S Chr8 20762001 20799000 0 0 Deletion 36999 LOC_Os08g33530 TCP family transcription factor, putative, expressed FN3114-S Chr8 20797444 Chr2 176939 0 Translocation 0 FN3114-S Chr8 20797828 Chr2 176923 0 Translocation 0 FN3114-S Chr8 20798016 21094604 0 0 Inversion 296588 FN3114-S Chr8 22255062 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3114-S Chr8 22292961 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3114-S Chr8 23112001 23148000 0 0 Deletion 35999 LOC_Os08g36640 expressed protein FN3114-S Chr8 23112001 23148000 0 0 Deletion 35999 LOC_Os08g36650 retrotransposon protein, putative, unclassified, expressed FN3114-S Chr8 23112001 23148000 0 0 Deletion 35999 LOC_Os08g36660 expressed protein FN3114-S Chr8 23112001 23148000 0 0 Deletion 35999 LOC_Os08g36670 transposon protein, putative, unclassified, expressed FN3114-S Chr8 23112001 23148000 0 0 Deletion 35999 LOC_Os08g36680 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed FN3114-S Chr8 23112001 23148000 0 0 Deletion 35999 LOC_Os08g36870 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3114-S Chr8 24498304 24595659 0 0 Inversion 97355 FN3114-S Chr8 24785351 24785359 0 0 Deletion 8 FRAME_SHIFT HET LOC_Os08g39240 OsWAK76 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed FN3114-S Chr8 26643987 26643987 0 0 Insertion 1 frameshift_variant HET LOC_Os08g42160 retrotransposon protein, putative, unclassified, expressed FN3114-S Chr8 499856 T-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3114-S Chr8 7086518 G-C 0 0 Single Base Substitution 0 INTRON HET FN3114-S Chr8 9810742 9810743 0 0 Deletion 1 frameshift_variant HET LOC_Os08g16090 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3114-S Chr9 1102866 1102866 0 0 Insertion 4 intergenic_region HET FN3114-S Chr9 12519169 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3114-S Chr9 14340408 14340410 0 0 Deletion 2 upstream_gene_variant HET FN3114-S Chr9 2246120 2279186 0 0 Inversion 33066 FN3114-S Chr9 2246161 2279372 0 0 Inversion 33211 FN3114-S Chr9 22856508 22856514 0 0 Deletion 6 CODON_DELETION HOMO LOC_Os09g39870 2-phosphoglycerate kinase-related, putative, expressed