FN3115-S Chr1 12074371 12074372 0 0 Deletion 1 HET FN3115-S Chr1 12850770 A-G 0 0 Single Base Substitution 0 HET FN3115-S Chr1 12850771 C-T 0 0 Single Base Substitution 0 HET FN3115-S Chr1 6479846 6479849 0 0 Deletion 3 disruptive_inframe_deletion Homo LOC_Os01g11920 retrotransposon protein, putative, unclassified, expressed FN3115-S Chr10 13746737 Chr9 19736789 0 Translocation 0 FN3115-S Chr10 13866161 A-C 0 0 Single Base Substitution 0 Homo FN3115-S Chr10 22721470 C-T 0 0 Single Base Substitution 0 HET FN3115-S Chr10 23159272 23159279 0 0 Deletion 7 frameshift_variant HET LOC_Os10g42960 urea active transporter, putative, expressed FN3115-S Chr10 4571337 A-T 0 0 Single Base Substitution 0 HET FN3115-S Chr10 8435811 G-C 0 0 Single Base Substitution 0 HET FN3115-S Chr11 10183620 10183621 0 0 Deletion 1 Homo FN3115-S Chr11 10453742 10453752 0 0 Insertion 10 HET FN3115-S Chr11 2097945 A-T 0 0 Single Base Substitution 0 HET FN3115-S Chr11 2455613 C-T 0 0 Single Base Substitution 0 HET FN3115-S Chr11 2455614 C-T 0 0 Single Base Substitution 0 HET FN3115-S Chr11 2458003 2458016 0 0 Deletion 13 HET FN3115-S Chr12 10500464 C-A 0 0 Single Base Substitution 0 HET FN3115-S Chr12 12965666 12965682 0 0 Deletion 16 HET FN3115-S Chr12 14804071 14804076 0 0 Deletion 5 frameshift_variant HET LOC_Os12g25580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3115-S Chr12 16652901 16652906 0 0 Deletion 5 HET FN3115-S Chr12 20027136 20027592 0 0 Inversion 0 FN3115-S Chr12 21072166 G-C 0 0 Single Base Substitution 0 HET FN3115-S Chr12 25128479 G-C 0 0 Single Base Substitution 0 HET FN3115-S Chr12 8774364 Chr9 19734484 0 Translocation 0 LOC_Os09g33470 mitochondrial carrier protein, putative, expressed FN3115-S Chr12 8774364 Chr9 19734484 0 Translocation 0 LOC_Os12g15370 expressed protein FN3115-S Chr12 8774739 Chr10 14106520 0 Translocation 0 LOC_Os12g15370 expressed protein FN3115-S Chr2 26327704 26327708 0 0 Deletion 4 HET FN3115-S Chr2 28952505 G-A 0 0 Single Base Substitution 0 HET FN3115-S Chr2 6338143 C-T 0 0 Single Base Substitution 0 Homo FN3115-S Chr2 7238707 7238708 0 0 Deletion 1 Homo FN3115-S Chr3 17192520 17193968 0 0 Inversion 0 FN3115-S Chr3 26603939 26603941 0 0 Deletion 2 HET FN3115-S Chr3 33050081 33050095 0 0 Deletion 14 frameshift_variant&splice_acceptor_variant&splice_region_variant&intron_variant HET LOC_Os03g58060 XRN 5'-3' exonuclease N-terminus domain containing protein, expressed FN3115-S Chr3 34789591 34789597 0 0 Deletion 6 HET FN3115-S Chr3 8864700 G-A 0 0 Single Base Substitution 0 HET FN3115-S Chr4 13055184 13182309 0 0 Inversion 0 LOC_Os04g22990 retrotransposon protein, putative, unclassified, expressed FN3115-S Chr4 13055184 13182309 0 0 Inversion 0 LOC_Os04g23180 cation efflux family protein, putative, expressed FN3115-S Chr4 13055189 13182469 0 0 Inversion 0 LOC_Os04g22990 retrotransposon protein, putative, unclassified, expressed FN3115-S Chr4 13055189 13182469 0 0 Inversion 0 LOC_Os04g23180 cation efflux family protein, putative, expressed FN3115-S Chr4 13079999 T-A 0 0 Single Base Substitution 0 HET FN3115-S Chr4 13080000 C-A 0 0 Single Base Substitution 0 HET FN3115-S Chr4 13080005 G-A 0 0 Single Base Substitution 0 HET FN3115-S Chr4 1528263 C-T 0 0 Single Base Substitution 0 HET FN3115-S Chr4 15519059 Chr2 22225444 0 Translocation 0 FN3115-S Chr4 28339732 Chr2 34066817 0 Translocation 0 FN3115-S Chr4 33153673 33154119 0 0 Inversion 0 FN3115-S Chr4 5851048 5851050 0 0 Deletion 2 frameshift_variant HET LOC_Os04g10760 expressed protein FN3115-S Chr4 7127616 7127617 0 0 Deletion 1 HET FN3115-S Chr4 7202557 7203384 0 0 Inversion 0 FN3115-S Chr5 11473556 11496252 0 0 Inversion 0 FN3115-S Chr5 11473561 12051231 0 0 Inversion 0 FN3115-S Chr5 12010382 12010385 0 0 Deletion 3 HET FN3115-S Chr5 16154319 16154681 0 0 Inversion 0 FN3115-S Chr5 17936811 17936812 0 0 Deletion 1 HET FN3115-S Chr5 19136494 C-T 0 0 Single Base Substitution 0 HET FN3115-S Chr5 23154461 T-C 0 0 Single Base Substitution 0 HET FN3115-S Chr5 3906050 3906054 0 0 Deletion 4 frameshift_variant HET LOC_Os05g07340 retrotransposon protein, putative, unclassified, expressed FN3115-S Chr5 5262909 5262911 0 0 Deletion 2 Homo FN3115-S Chr6 12627501 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g21860 retrotransposon protein, putative, unclassified, expressed FN3115-S Chr6 9133548 9133549 0 0 Deletion 1 frameshift_variant Homo LOC_Os06g16050 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3115-S Chr7 20039921 C-T 0 0 Single Base Substitution 0 HET FN3115-S Chr7 20171670 C-T 0 0 Single Base Substitution 0 HET FN3115-S Chr7 25468974 C-T 0 0 Single Base Substitution 0 HET FN3115-S Chr7 2916360 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os07g06020 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3115-S Chr7 5490740 5490743 0 0 Insertion 3 inframe_insertion HET LOC_Os07g10220 anthocyanidin 3-O-glucosyltransferase, putative, expressed FN3115-S Chr8 12599853 G-C 0 0 Single Base Substitution 0 HET FN3115-S Chr8 15582320 15582771 0 0 Inversion 0 FN3115-S Chr8 27551485 27551486 0 0 Deletion 1 HET FN3115-S Chr9 14633705 C-T 0 0 Single Base Substitution 0 HET FN3115-S Chr9 15001117 15001875 0 0 Inversion 0 FN3115-S Chr9 1617912 1617914 0 0 Deletion 2 frameshift_variant HET LOC_Os09g03330 transposon protein, putative, CACTA, En/Spm sub-class FN3115-S Chr9 17141370 Chr4 28339443 0 Translocation 0 LOC_Os09g28220 NFKB, putative, expressed FN3115-S Chr9 17141371 Chr2 34066819 0 Translocation 0 LOC_Os09g28220 NFKB, putative, expressed FN3115-S Chr9 18661029 C-T 0 0 Single Base Substitution 0 HET FN3115-S Chr9 19736789 Chr2 34066805 0 Translocation 0 FN3115-S Chr9 19793603 19793613 0 0 Deletion 10 HET FN3115-S Chr9 20235882 20244430 0 0 Inversion 0 FN3115-S Chr9 20235882 20244430 0 0 Inversion 0 LOC_Os09g34300 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed FN3115-S Chr9 5602623 T-G 0 0 Single Base Substitution 0 HET FN3115-S Chr9 5620711 5620715 0 0 Deletion 4 HET