FN3117-S Chr1 17046330 17046343 0 0 Deletion 13 FRAME_SHIFT HOMO LOC_Os01g31180 retrotransposon protein, putative, unclassified FN3117-S Chr1 31222676 A-T 0 0 Single Base Substitution 0 INTRON HET FN3117-S Chr1 34069850 34069853 0 0 Deletion 3 upstream_gene_variant HET FN3117-S Chr1 38346317 38346317 0 0 Insertion 1 upstream_gene_variant HET FN3117-S Chr10 10312058 Chr4 5525973 0 Translocation 0 FN3117-S Chr10 13582647 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g26220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3117-S Chr10 21705632 21705641 0 0 Deletion 9 INTERGENIC HOMO FN3117-S Chr10 2239005 Chr1 2819544 0 Translocation 0 FN3117-S Chr10 2239110 Chr1 2819415 0 Translocation 0 FN3117-S Chr10 22664572 22664575 0 0 Deletion 3 INTERGENIC HOMO FN3117-S Chr11 15224820 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3117-S Chr11 15899623 15899623 0 0 Insertion 12 downstream_gene_variant HET FN3117-S Chr11 16018122 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3117-S Chr11 18251162 18251163 0 0 Deletion 1 upstream_gene_variant HET FN3117-S Chr11 19794202 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3117-S Chr11 20050670 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3117-S Chr11 28772598 Chr1 16059626 0 Translocation 0 FN3117-S Chr11 4170794 T-A 0 0 Single Base Substitution 0 INTRON HET FN3117-S Chr11 5971476 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g10830 retrotransposon protein, putative, unclassified, expressed FN3117-S Chr12 12366742 Chr3 26901377 0 Translocation 0 FN3117-S Chr12 14771792 15122288 0 0 Inversion 350496 LOC_Os12g26030 FACT complex subunit SPT16, putative, expressed FN3117-S Chr12 1882193 1882195 0 0 Deletion 2 upstream_gene_variant HET FN3117-S Chr12 8401878 Chr8 25008773 0 Translocation 0 FN3117-S Chr12 8732277 Chr3 5096190 0 Translocation 0 FN3117-S Chr12 9499739 Chr11 15465625 0 Translocation 0 FN3117-S Chr2 11701874 11701875 0 0 Deletion 1 downstream_gene_variant HET FN3117-S Chr2 14298883 14298884 0 0 Deletion 1 intergenic_region HET FN3117-S Chr2 22213616 22213617 0 0 Deletion 1 upstream_gene_variant HET FN3117-S Chr2 23033539 Chr1 42158311 0 Translocation 0 FN3117-S Chr2 25231159 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3117-S Chr2 34372124 34372130 0 0 Deletion 6 INTERGENIC HET FN3117-S Chr2 34845898 34845898 0 0 Insertion 2 downstream_gene_variant HET FN3117-S Chr3 13269373 13269793 0 0 Deletion 420 frameshift_variant&stop_lost&splice_region_variant HET LOC_Os03g22970 retrotransposon protein, putative, Ty3-gypsy subclass FN3117-S Chr3 23191177 23191184 0 0 Deletion 7 INTERGENIC HET FN3117-S Chr3 32940836 32940839 0 0 Deletion 3 inframe_deletion HET LOC_Os03g57808 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3117-S Chr3 4304137 4304177 0 0 Deletion 40 INTERGENIC HET FN3117-S Chr3 8231561 8231561 0 0 Insertion 1 upstream_gene_variant HET FN3117-S Chr3 8453261 8609118 0 0 Inversion 155857 FN3117-S Chr3 8453272 8609121 0 0 Inversion 155849 FN3117-S Chr3 9533618 9533618 0 0 Insertion 2 INTERGENIC HET FN3117-S Chr4 1038331 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g02710 retrotransposon protein, putative, unclassified, expressed FN3117-S Chr4 24490221 24490240 0 0 Deletion 19 INTERGENIC HET FN3117-S Chr4 26001470 26001470 0 0 Insertion 4 upstream_gene_variant HET FN3117-S Chr4 2644025 2644025 0 0 Insertion 1 downstream_gene_variant HET FN3117-S Chr4 28461817 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3117-S Chr5 12578364 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3117-S Chr5 27377157 27377159 0 0 Deletion 2 INTERGENIC HOMO FN3117-S Chr5 4954155 4954155 0 0 Insertion 1 upstream_gene_variant HET FN3117-S Chr5 6368133 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3117-S Chr5 9430015 Chr1 40606660 0 Translocation 0 FN3117-S Chr6 14068299 Chr2 10853837 0 Translocation 0 LOC_Os02g18612 expressed protein FN3117-S Chr6 16510657 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN3117-S Chr6 26331806 26331807 0 0 Deletion 1 INTERGENIC HOMO FN3117-S Chr6 4092429 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3117-S Chr6 6998749 Chr1 11768943 0 Translocation 0 FN3117-S Chr6 8212931 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g14590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3117-S Chr6 8799129 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g15510 transposon protein, putative, unclassified, expressed FN3117-S Chr7 11895799 11895799 0 0 Insertion 8 upstream_gene_variant HET FN3117-S Chr7 11990563 11990564 0 0 Deletion 1 upstream_gene_variant HET FN3117-S Chr7 12164891 12164893 0 0 Deletion 2 intergenic_region HET FN3117-S Chr7 12334499 12334504 0 0 Deletion 5 FRAME_SHIFT HOMO LOC_Os07g22060 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3117-S Chr7 13160190 13160194 0 0 Deletion 4 intron_variant HET FN3117-S Chr7 13805001 13837000 0 0 Deletion 31999 LOC_Os07g24300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3117-S Chr7 13805001 13837000 0 0 Deletion 31999 LOC_Os07g24310 retrotransposon protein, putative, unclassified, expressed FN3117-S Chr7 13805001 13837000 0 0 Deletion 31999 LOC_Os07g24320 retrotransposon protein, putative, unclassified, expressed FN3117-S Chr7 26518228 26518228 0 0 Insertion 4 upstream_gene_variant HET FN3117-S Chr8 13403119 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3117-S Chr8 13449713 13449714 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os08g22310 retrotransposon protein, putative, unclassified, expressed FN3117-S Chr8 16195105 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3117-S Chr8 4430785 4430786 0 0 Deletion 1 INTRON HOMO FN3117-S Chr8 7872819 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3117-S Chr9 6701372 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO