FN3119-S Chr1 15924001 15956000 0 0 Deletion 31999 LOC_Os01g28420 transposon protein, putative, CACTA, En/Spm sub-class FN3119-S Chr1 15924001 15956000 0 0 Deletion 31999 LOC_Os01g28440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3119-S Chr1 15924001 15956000 0 0 Deletion 31999 LOC_Os01g28450 SCP-like extracellular protein, expressed FN3119-S Chr1 15924001 15956000 0 0 Deletion 31999 LOC_Os01g28474 transferase family protein, putative, expressed FN3119-S Chr1 15924001 15956000 0 0 Deletion 31999 LOC_Os01g28490 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3119-S Chr1 16782225 16782273 0 0 Deletion 48 intergenic_region HET FN3119-S Chr1 19412001 19438000 0 0 Deletion 25999 LOC_Os01g35080 retrotransposon protein, putative, unclassified FN3119-S Chr1 19412001 19438000 0 0 Deletion 25999 LOC_Os01g35090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr1 19412001 19438000 0 0 Deletion 25999 LOC_Os01g35100 zinc finger, C3HC4 type domain containing protein, expressed FN3119-S Chr1 19412001 19438000 0 0 Deletion 25999 LOC_Os01g35110 expressed protein FN3119-S Chr1 19412001 19438000 0 0 Deletion 25999 LOC_Os01g35120 zinc finger, C3HC4 type domain containing protein, expressed FN3119-S Chr1 19412001 19438000 0 0 Deletion 25999 LOC_Os01g35470 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr1 29297880 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3119-S Chr1 32203661 32203661 0 0 Insertion 6 upstream_gene_variant HET FN3119-S Chr1 37116001 37141000 0 0 Deletion 24999 LOC_Os01g63950 expressed protein FN3119-S Chr1 37116001 37141000 0 0 Deletion 24999 LOC_Os01g63960 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3119-S Chr1 37116001 37141000 0 0 Deletion 24999 LOC_Os01g63970 sialyltransferase family domain containing protein, expressed FN3119-S Chr1 37116001 37141000 0 0 Deletion 24999 LOC_Os01g65560 snRK1-interacting protein 1, putative, expressed FN3119-S Chr1 41345231 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3119-S Chr1 42829914 42829914 0 0 Insertion 1 upstream_gene_variant HET FN3119-S Chr1 7971764 7971766 0 0 Deletion 2 INTERGENIC HET FN3119-S Chr10 1020151 1020152 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os10g02640 expressed protein FN3119-S Chr10 11127001 11142000 0 0 Deletion 14999 LOC_Os10g21720 expressed protein FN3119-S Chr10 12703351 Chr2 20742928 0 Translocation 0 FN3119-S Chr10 13534108 13534108 0 0 Insertion 16 downstream_gene_variant HET FN3119-S Chr10 18460001 18474000 0 0 Deletion 13999 LOC_Os10g34650 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr10 18460001 18474000 0 0 Deletion 13999 LOC_Os10g34660 expressed protein FN3119-S Chr10 18460001 18474000 0 0 Deletion 13999 LOC_Os10g36550 CRP3 - Cysteine-rich family protein precursor, expressed FN3119-S Chr10 3453028 3453080 0 0 Deletion 52 upstream_gene_variant HET FN3119-S Chr10 4689001 4735000 0 0 Deletion 45999 LOC_Os10g08660 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3119-S Chr10 4689001 4735000 0 0 Deletion 45999 LOC_Os10g08670 chalcone synthase, putative, expressed FN3119-S Chr10 4689001 4735000 0 0 Deletion 45999 LOC_Os10g08680 conserved hypothetical protein FN3119-S Chr10 4689001 4735000 0 0 Deletion 45999 LOC_Os10g08690 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr10 4689001 4735000 0 0 Deletion 45999 LOC_Os10g08696 retrotransposon protein, putative, Ty3-gypsy subclass FN3119-S Chr10 4689001 4735000 0 0 Deletion 45999 LOC_Os10g08702 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr10 4689001 4735000 0 0 Deletion 45999 LOC_Os10g08710 chalcone synthase, putative, expressed FN3119-S Chr10 4689001 4735000 0 0 Deletion 45999 LOC_Os10g08720 hypothetical protein FN3119-S Chr10 4689001 4735000 0 0 Deletion 45999 LOC_Os10g09100 cytochrome P450, putative, expressed FN3119-S Chr10 6132949 Chr9 2799476 0 Translocation 0 FN3119-S Chr10 9054001 9066000 0 0 Deletion 11999 LOC_Os10g17920 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr10 9054001 9066000 0 0 Deletion 11999 LOC_Os10g17930 OsFBX381 - F-box domain containing protein, expressed FN3119-S Chr10 9054001 9066000 0 0 Deletion 11999 LOC_Os10g17950 TKL_IRAK_DUF26-lc.5 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3119-S Chr11 1024001 1048000 0 0 Deletion 23999 LOC_Os11g02964 FAR1 family protein, expressed FN3119-S Chr11 1024001 1048000 0 0 Deletion 23999 LOC_Os11g02980 expressed protein FN3119-S Chr11 1024001 1048000 0 0 Deletion 23999 LOC_Os11g02990 conserved hypothetical protein FN3119-S Chr11 1024001 1048000 0 0 Deletion 23999 LOC_Os11g03000 retrotransposon protein, putative, unclassified FN3119-S Chr11 1024001 1048000 0 0 Deletion 23999 LOC_Os11g03010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr11 1024001 1048000 0 0 Deletion 23999 LOC_Os11g03160 glycosyl transferase, family 8, putative, expressed FN3119-S Chr11 10299001 10319000 0 0 Deletion 19999 LOC_Os11g18290 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr11 10299001 10319000 0 0 Deletion 19999 LOC_Os11g18300 expressed protein FN3119-S Chr11 10299001 10319000 0 0 Deletion 19999 LOC_Os11g18660 expressed protein FN3119-S Chr11 10659001 10690000 0 0 Deletion 30999 LOC_Os11g18790 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr11 10659001 10690000 0 0 Deletion 30999 LOC_Os11g18800 retrotransposon protein, putative, unclassified FN3119-S Chr11 10659001 10690000 0 0 Deletion 30999 LOC_Os11g18810 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr11 10659001 10690000 0 0 Deletion 30999 LOC_Os11g18820 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr11 1091550 Chr10 10099007 0 Translocation 0 FN3119-S Chr11 11071001 11083000 0 0 Deletion 11999 LOC_Os11g19320 expressed protein FN3119-S Chr11 11071001 11083000 0 0 Deletion 11999 LOC_Os11g19330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3119-S Chr11 11309001 11331000 0 0 Deletion 21999 LOC_Os11g19630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr11 11309001 11331000 0 0 Deletion 21999 LOC_Os11g19640 retrotransposon protein, putative, Ty3-gypsy subclass FN3119-S Chr11 11309001 11331000 0 0 Deletion 21999 LOC_Os11g19650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr11 11309001 11331000 0 0 Deletion 21999 LOC_Os11g19660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr11 11309001 11331000 0 0 Deletion 21999 LOC_Os11g19670 retrotransposon protein, putative, unclassified FN3119-S Chr11 11309001 11331000 0 0 Deletion 21999 LOC_Os11g19810 PWWP domain containing protein, expressed FN3119-S Chr11 1135001 1227000 0 0 Deletion 91999 LOC_Os11g03170 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr11 1135001 1227000 0 0 Deletion 91999 LOC_Os11g03180 expressed protein FN3119-S Chr11 1135001 1227000 0 0 Deletion 91999 LOC_Os11g03190 expressed protein FN3119-S Chr11 1135001 1227000 0 0 Deletion 91999 LOC_Os11g03200 EMB2748, putative, expressed FN3119-S Chr11 1135001 1227000 0 0 Deletion 91999 LOC_Os11g03210 glutathione S-transferase, N-terminal domain containing protein FN3119-S Chr11 1135001 1227000 0 0 Deletion 91999 LOC_Os11g03220 RNA binding protein, putative, expressed FN3119-S Chr11 1135001 1227000 0 0 Deletion 91999 LOC_Os11g03230 nucleoside-triphosphatase, putative, expressed FN3119-S Chr11 1135001 1227000 0 0 Deletion 91999 LOC_Os11g03240 MATE efflux family protein, putative, expressed FN3119-S Chr11 1135001 1227000 0 0 Deletion 91999 LOC_Os11g03250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr11 1135001 1227000 0 0 Deletion 91999 LOC_Os11g03260 ligA, putative, expressed FN3119-S Chr11 1135001 1227000 0 0 Deletion 91999 LOC_Os11g03270 nucleoside-triphosphatase, putative, expressed FN3119-S Chr11 1135001 1227000 0 0 Deletion 91999 LOC_Os11g03280 transposon protein, putative, unclassified, expressed FN3119-S Chr11 1135001 1227000 0 0 Deletion 91999 LOC_Os11g03290 nucleoside-triphosphatase, putative, expressed FN3119-S Chr11 14263808 14263808 0 0 Insertion 14 upstream_gene_variant HET FN3119-S Chr11 15163986 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3119-S Chr11 17836756 Chr10 12209864 0 Translocation 0 FN3119-S Chr11 19804901 Chr3 23443198 0 Translocation 0 FN3119-S Chr11 20126934 Chr3 8265184 0 Translocation 0 FN3119-S Chr11 20924001 20942000 0 0 Deletion 17999 LOC_Os11g35700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr11 20924001 20942000 0 0 Deletion 17999 LOC_Os11g35790 Leucine rich repeat N-terminal domain containing protein, putative, expressed FN3119-S Chr11 21086001 21118000 0 0 Deletion 31999 LOC_Os11g35920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr11 21086001 21118000 0 0 Deletion 31999 LOC_Os11g35930 chalcone synthase, putative, expressed FN3119-S Chr11 21086001 21118000 0 0 Deletion 31999 LOC_Os11g35940 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3119-S Chr11 21086001 21118000 0 0 Deletion 31999 LOC_Os11g36270 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr11 2313739 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g05220 transposon protein, putative, unclassified, expressed FN3119-S Chr11 2313741 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3119-S Chr11 28306474 Chr3 25611595 0 Translocation 0 FN3119-S Chr11 28616920 28616921 0 0 Deletion 1 upstream_gene_variant HET FN3119-S Chr11 7514701 T-C 0 0 Single Base Substitution 0 INTRON HET FN3119-S Chr11 8482001 8500000 0 0 Deletion 17999 LOC_Os11g15080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr11 8482001 8500000 0 0 Deletion 17999 LOC_Os11g15090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr11 8482001 8500000 0 0 Deletion 17999 LOC_Os11g15100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr11 8482001 8500000 0 0 Deletion 17999 LOC_Os11g15210 anthocyanin regulatory Lc protein, putative, expressed FN3119-S Chr11 9636303 C-T 0 0 Single Base Substitution 0 INTRON HET FN3119-S Chr11 9703001 9728000 0 0 Deletion 24999 LOC_Os11g17410 transposon protein, putative, CACTA, En/Spm sub-class FN3119-S Chr11 9703001 9728000 0 0 Deletion 24999 LOC_Os11g17420 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr11 9703001 9728000 0 0 Deletion 24999 LOC_Os11g17430 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr11 9703001 9728000 0 0 Deletion 24999 LOC_Os11g17440 enoyl-CoA hydratase/isomerase family protein, expressed FN3119-S Chr12 11581225 11581226 0 0 Deletion 1 upstream_gene_variant HET FN3119-S Chr12 11760001 11790000 0 0 Deletion 29999 LOC_Os12g20190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr12 11760001 11790000 0 0 Deletion 29999 LOC_Os12g20200 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr12 11760001 11790000 0 0 Deletion 29999 LOC_Os12g20210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr12 13318573 13318573 0 0 Insertion 1 downstream_gene_variant HET FN3119-S Chr12 14138001 14164000 0 0 Deletion 25999 LOC_Os12g24690 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3119-S Chr12 14138001 14164000 0 0 Deletion 25999 LOC_Os12g24700 retrotransposon protein, putative, Ty1-copia subclass FN3119-S Chr12 14138001 14164000 0 0 Deletion 25999 LOC_Os12g24750 retrotransposon protein, putative, Ty3-gypsy subclass FN3119-S Chr12 16866528 16866528 0 0 Insertion 4 upstream_gene_variant HET FN3119-S Chr12 19542873 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3119-S Chr12 21678185 21678192 0 0 Deletion 7 INTRON HET FN3119-S Chr12 9895001 9912000 0 0 Deletion 16999 LOC_Os12g17290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr12 9895001 9912000 0 0 Deletion 16999 LOC_Os12g17300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr12 9895001 9912000 0 0 Deletion 16999 LOC_Os12g17310 prefoldin, putative, expressed FN3119-S Chr2 13532001 13558000 0 0 Deletion 25999 LOC_Os02g22720 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr2 13532001 13558000 0 0 Deletion 25999 LOC_Os02g22730 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr2 13532001 13558000 0 0 Deletion 25999 LOC_Os02g22740 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr2 13532001 13558000 0 0 Deletion 25999 LOC_Os02g22750 expressed protein FN3119-S Chr2 13532001 13558000 0 0 Deletion 25999 LOC_Os02g22760 retrotransposon protein, putative, LINE subclass, expressed FN3119-S Chr2 13532001 13558000 0 0 Deletion 25999 LOC_Os02g22770 expressed protein FN3119-S Chr2 15046001 15067000 0 0 Deletion 20999 LOC_Os02g25710 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr2 15046001 15067000 0 0 Deletion 20999 LOC_Os02g25720 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3119-S Chr2 15046001 15067000 0 0 Deletion 20999 LOC_Os02g25730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr2 15749126 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3119-S Chr2 16006306 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3119-S Chr2 16304453 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3119-S Chr2 27887001 27907000 0 0 Deletion 19999 LOC_Os02g45790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr2 27887001 27907000 0 0 Deletion 19999 LOC_Os02g45800 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr2 27887001 27907000 0 0 Deletion 19999 LOC_Os02g45810 WD domain, G-beta repeat domain containing protein, expressed FN3119-S Chr2 27887001 27907000 0 0 Deletion 19999 LOC_Os02g47350 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed FN3119-S Chr2 8341218 8341219 0 0 Deletion 1 INTRON HET FN3119-S Chr2 8387888 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3119-S Chr3 11545001 11566000 0 0 Deletion 20999 LOC_Os03g20420 alpha-N-arabinofuranosidase A, putative, expressed FN3119-S Chr3 11545001 11566000 0 0 Deletion 20999 LOC_Os03g20430 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH8, putative, expressed FN3119-S Chr3 11545001 11566000 0 0 Deletion 20999 LOC_Os03g21080 guanine nucleotide exchange factor, putative, expressed FN3119-S Chr3 16153517 G-T 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN3119-S Chr3 2057191 2057195 0 0 Deletion 4 FRAME_SHIFT HET LOC_Os03g04430 protein phosphatase 2C, putative, expressed FN3119-S Chr3 23635076 23635090 0 0 Deletion 14 INTRON HOMO FN3119-S Chr3 24402660 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os03g43650 uncharacterized protein At4g06744 precursor, putative, expressed FN3119-S Chr3 26596222 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3119-S Chr3 32220001 32232000 0 0 Deletion 11999 LOC_Os03g56566 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr3 32220001 32232000 0 0 Deletion 11999 LOC_Os03g56572 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr3 32220001 32232000 0 0 Deletion 11999 LOC_Os03g59530 protein Kinase-associated protein phosphatase, putative, expressed FN3119-S Chr3 32928478 32928480 0 0 Deletion 2 FRAME_SHIFT HET LOC_Os03g57780 protein kinase, putative, expressed FN3119-S Chr3 32946484 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g57820 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3119-S Chr3 34335037 T-A 0 0 Single Base Substitution 0 INTRON HET FN3119-S Chr3 5197126 5197127 0 0 Deletion 1 downstream_gene_variant HET FN3119-S Chr3 8336329 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3119-S Chr4 10752001 10772000 0 0 Deletion 19999 LOC_Os04g19330 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr4 10752001 10772000 0 0 Deletion 19999 LOC_Os04g19340 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr4 10752001 10772000 0 0 Deletion 19999 LOC_Os04g19350 retrotransposon protein, putative, Ty3-gypsy subclass FN3119-S Chr4 10752001 10772000 0 0 Deletion 19999 LOC_Os04g19360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr4 133001 167000 0 0 Deletion 33999 LOC_Os04g01180 retrotransposon protein, putative, LINE subclass, expressed FN3119-S Chr4 133001 167000 0 0 Deletion 33999 LOC_Os04g01190 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr4 133001 167000 0 0 Deletion 33999 LOC_Os04g01200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr4 133001 167000 0 0 Deletion 33999 LOC_Os04g01210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr4 14113001 14128000 0 0 Deletion 14999 LOC_Os04g24590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr4 14113001 14128000 0 0 Deletion 14999 LOC_Os04g24780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr4 14883402 14883403 0 0 Deletion 1 INTERGENIC HOMO FN3119-S Chr4 16995001 17005000 0 0 Deletion 9999 LOC_Os04g29210 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed FN3119-S Chr4 17161327 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3119-S Chr4 17676636 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3119-S Chr4 19978087 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3119-S Chr4 20610732 20610735 0 0 Deletion 3 CODON_DELETION HET LOC_Os04g34030 U-box domain-containing protein, putative, expressed FN3119-S Chr4 2253023 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3119-S Chr4 29979135 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3119-S Chr4 29979136 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3119-S Chr4 32247001 32260000 0 0 Deletion 12999 LOC_Os04g54130 TKL_IRAK_DUF26-ld.1 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3119-S Chr4 32247001 32260000 0 0 Deletion 12999 LOC_Os04g54140 receptor-like kinase, putative, expressed FN3119-S Chr4 32247001 32260000 0 0 Deletion 12999 LOC_Os04g55030 cullin, putative, expressed FN3119-S Chr4 6903850 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g12480 pumilio-family RNA binding repeat containing protein, expressed FN3119-S Chr4 8772001 8809000 0 0 Deletion 36999 LOC_Os04g16160 expressed protein FN3119-S Chr4 8772001 8809000 0 0 Deletion 36999 LOC_Os04g16170 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr4 8772001 8809000 0 0 Deletion 36999 LOC_Os04g16180 retrotransposon protein, putative, unclassified FN3119-S Chr4 8772001 8809000 0 0 Deletion 36999 LOC_Os04g16190 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr4 8772001 8809000 0 0 Deletion 36999 LOC_Os04g16200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr4 8772001 8809000 0 0 Deletion 36999 LOC_Os04g16220 retrotransposon protein, putative, Ty3-gypsy subclass FN3119-S Chr5 10631001 10670000 0 0 Deletion 38999 LOC_Os05g18400 retrotransposon protein, putative, unclassified FN3119-S Chr5 10631001 10670000 0 0 Deletion 38999 LOC_Os05g18410 retrotransposon protein, putative, Ty1-copia subclass FN3119-S Chr5 10631001 10670000 0 0 Deletion 38999 LOC_Os05g18419 retrotransposon, putative, centromere-specific FN3119-S Chr5 10631001 10670000 0 0 Deletion 38999 LOC_Os05g18446 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr5 10968001 10990000 0 0 Deletion 21999 LOC_Os05g18910 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr5 10968001 10990000 0 0 Deletion 21999 LOC_Os05g18920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr5 10968001 10990000 0 0 Deletion 21999 LOC_Os05g18930 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr5 10968001 10990000 0 0 Deletion 21999 LOC_Os05g19220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr5 11928001 11950000 0 0 Deletion 21999 LOC_Os05g20350 expressed protein FN3119-S Chr5 11928001 11950000 0 0 Deletion 21999 LOC_Os05g20360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr5 11928001 11950000 0 0 Deletion 21999 LOC_Os05g20370 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr5 11928001 11950000 0 0 Deletion 21999 LOC_Os05g20380 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr5 11928001 11950000 0 0 Deletion 21999 LOC_Os05g20430 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr5 11983001 12009000 0 0 Deletion 25999 LOC_Os05g20440 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr5 11983001 12009000 0 0 Deletion 25999 LOC_Os05g20450 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr5 11983001 12009000 0 0 Deletion 25999 LOC_Os05g20460 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr5 11983001 12009000 0 0 Deletion 25999 LOC_Os05g20740 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3119-S Chr5 12188001 12204000 0 0 Deletion 15999 LOC_Os05g20770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr5 12188001 12204000 0 0 Deletion 15999 LOC_Os05g20780 retrotransposon protein, putative, Ty3-gypsy subclass FN3119-S Chr5 12188001 12204000 0 0 Deletion 15999 LOC_Os05g20790 retrotransposon protein, putative, unclassified FN3119-S Chr5 12188001 12204000 0 0 Deletion 15999 LOC_Os05g20914 expressed protein FN3119-S Chr5 13817464 A-T 0 0 Single Base Substitution 0 INTRON HET FN3119-S Chr5 1601834 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3119-S Chr5 1829761 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3119-S Chr5 18660001 18682000 0 0 Deletion 21999 LOC_Os05g32030 transposon protein, putative, unclassified, expressed FN3119-S Chr5 18660001 18682000 0 0 Deletion 21999 LOC_Os05g32040 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr5 18660001 18682000 0 0 Deletion 21999 LOC_Os05g32050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr5 18660001 18682000 0 0 Deletion 21999 LOC_Os05g32060 expressed protein FN3119-S Chr5 19547001 19572000 0 0 Deletion 24999 LOC_Os05g33330 transposon protein, putative, CACTA, En/Spm sub-class FN3119-S Chr5 19547001 19572000 0 0 Deletion 24999 LOC_Os05g33340 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3119-S Chr5 23613535 23613553 0 0 Deletion 18 INTERGENIC HET FN3119-S Chr5 2429594 2429594 0 0 Insertion 1 frameshift_variant HET LOC_Os05g05000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr5 26109001 26123000 0 0 Deletion 13999 LOC_Os05g44930 receptor-like protein kinase, putative, expressed FN3119-S Chr5 26109001 26123000 0 0 Deletion 13999 LOC_Os05g44940 protein kinase domain containing protein, expressed FN3119-S Chr5 26109001 26123000 0 0 Deletion 13999 LOC_Os05g45460 POEI52 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN3119-S Chr5 26172764 26172770 0 0 Deletion 6 INTERGENIC HOMO FN3119-S Chr5 27577234 27577235 0 0 Deletion 1 INTERGENIC HET FN3119-S Chr5 7569029 7569030 0 0 Deletion 1 upstream_gene_variant HET FN3119-S Chr5 7868001 7894000 0 0 Deletion 25999 LOC_Os05g14090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr5 7868001 7894000 0 0 Deletion 25999 LOC_Os05g14100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr5 7868001 7894000 0 0 Deletion 25999 LOC_Os05g14110 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr5 7868001 7894000 0 0 Deletion 25999 LOC_Os05g14120 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr5 7868001 7894000 0 0 Deletion 25999 LOC_Os05g14130 ZOS5-05 - C2H2 zinc finger protein, expressed FN3119-S Chr6 12120001 12149000 0 0 Deletion 28999 LOC_Os06g20980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3119-S Chr6 12120001 12149000 0 0 Deletion 28999 LOC_Os06g20990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3119-S Chr6 12120001 12149000 0 0 Deletion 28999 LOC_Os06g21000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3119-S Chr6 12120001 12149000 0 0 Deletion 28999 LOC_Os06g21010 transposon protein, putative, unclassified, expressed FN3119-S Chr6 12120001 12149000 0 0 Deletion 28999 LOC_Os06g21020 methyltransferase, putative, expressed FN3119-S Chr6 12120001 12149000 0 0 Deletion 28999 LOC_Os06g21030 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3119-S Chr6 12120001 12149000 0 0 Deletion 28999 LOC_Os06g21240 glycine rich protein family protein, putative, expressed FN3119-S Chr6 13075081 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os06g22500 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr6 1338433 1338433 0 0 Insertion 12 upstream_gene_variant HET FN3119-S Chr6 14302001 14334000 0 0 Deletion 31999 LOC_Os06g24430 expressed protein FN3119-S Chr6 14302001 14334000 0 0 Deletion 31999 LOC_Os06g24440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3119-S Chr6 14302001 14334000 0 0 Deletion 31999 LOC_Os06g24450 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3119-S Chr6 14302001 14334000 0 0 Deletion 31999 LOC_Os06g24460 pleiotropic drug resistance protein 2, putative, expressed FN3119-S Chr6 14302001 14334000 0 0 Deletion 31999 LOC_Os06g24594 exonuclease, putative, expressed FN3119-S Chr6 16556001 16574000 0 0 Deletion 17999 LOC_Os06g29060 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr6 16556001 16574000 0 0 Deletion 17999 LOC_Os06g29440 expressed protein FN3119-S Chr6 17029001 17061000 0 0 Deletion 31999 LOC_Os06g29690 dynein light chain type 1 domain containing protein, expressed FN3119-S Chr6 17029001 17061000 0 0 Deletion 31999 LOC_Os06g29700 OsFBD11 - F-box and FBD domain containing protein, expressed FN3119-S Chr6 17029001 17061000 0 0 Deletion 31999 LOC_Os06g29710 OsFBD12 - F-box and FBD domain containing protein, expressed FN3119-S Chr6 17321001 17331000 0 0 Deletion 9999 LOC_Os06g30160 retrotransposon, putative, centromere-specific FN3119-S Chr6 18938515 18938515 0 0 Insertion 1 upstream_gene_variant HET FN3119-S Chr6 23328260 23328267 0 0 Deletion 7 FRAME_SHIFT HOMO LOC_Os06g39310 retrotransposon protein, putative, unclassified FN3119-S Chr6 24591372 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3119-S Chr6 24641001 24666000 0 0 Deletion 24999 LOC_Os06g41190 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3119-S Chr6 24641001 24666000 0 0 Deletion 24999 LOC_Os06g41200 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3119-S Chr6 29605079 G-T 0 0 Single Base Substitution 0 INTRON HET FN3119-S Chr6 30884956 30884956 0 0 Insertion 2 INTERGENIC HET FN3119-S Chr6 9453376 9453377 0 0 Deletion 1 INTERGENIC HET FN3119-S Chr7 14681001 14691000 0 0 Deletion 9999 LOC_Os07g26110 membrane associated DUF588 domain containing protein, putative, expressed FN3119-S Chr7 15974001 15991000 0 0 Deletion 16999 LOC_Os07g27430 expressed protein FN3119-S Chr7 15974001 15991000 0 0 Deletion 16999 LOC_Os07g27450 expressed protein FN3119-S Chr7 15974001 15991000 0 0 Deletion 16999 LOC_Os07g28770 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3119-S Chr7 17349001 17372000 0 0 Deletion 22999 LOC_Os07g29550 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr7 17349001 17372000 0 0 Deletion 22999 LOC_Os07g29560 expressed protein FN3119-S Chr7 17349001 17372000 0 0 Deletion 22999 LOC_Os07g29570 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr7 20570719 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3119-S Chr7 22684001 22721000 0 0 Deletion 36999 LOC_Os07g37830 peptidyl-prolyl cis-trans isomerase CYP37, chloroplast precursor, putative, expressed FN3119-S Chr7 22684001 22721000 0 0 Deletion 36999 LOC_Os07g37840 lipase, putative, expressed FN3119-S Chr7 22684001 22721000 0 0 Deletion 36999 LOC_Os07g37850 expressed protein FN3119-S Chr7 22684001 22721000 0 0 Deletion 36999 LOC_Os07g37860 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr7 22684001 22721000 0 0 Deletion 36999 LOC_Os07g37870 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr7 22684001 22721000 0 0 Deletion 36999 LOC_Os07g37880 hypothetical protein FN3119-S Chr7 22684001 22721000 0 0 Deletion 36999 LOC_Os07g39450 expressed protein FN3119-S Chr7 26884001 26910000 0 0 Deletion 25999 LOC_Os07g45064 Phosphatidylinositol kinase and FAT containing domain protein, putative, expressed FN3119-S Chr7 26884001 26910000 0 0 Deletion 25999 LOC_Os07g45070 FAT domain-containing protein, putative, expressed FN3119-S Chr7 26884001 26910000 0 0 Deletion 25999 LOC_Os07g45074 FAT domain-containing protein, putative, expressed FN3119-S Chr7 6161001 6173000 0 0 Deletion 11999 LOC_Os07g11190 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr7 6161001 6173000 0 0 Deletion 11999 LOC_Os07g11200 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr7 6161001 6173000 0 0 Deletion 11999 LOC_Os07g11210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr7 6161001 6173000 0 0 Deletion 11999 LOC_Os07g11780 transposon protein, putative, CACTA, En/Spm sub-class FN3119-S Chr7 6510001 6534000 0 0 Deletion 23999 LOC_Os07g11790 terpene synthase, putative, expressed FN3119-S Chr7 6510001 6534000 0 0 Deletion 23999 LOC_Os07g11800 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr7 6510001 6534000 0 0 Deletion 23999 LOC_Os07g11810 retrotransposon protein, putative, Ty3-gypsy subclass FN3119-S Chr7 6510001 6534000 0 0 Deletion 23999 LOC_Os07g12110 eukaryotic translation initiation factor 3 subunit E, putative, expressed FN3119-S Chr7 9367001 9391000 0 0 Deletion 23999 LOC_Os07g16070 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr7 9367001 9391000 0 0 Deletion 23999 LOC_Os07g16080 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr7 9367001 9391000 0 0 Deletion 23999 LOC_Os07g16090 retrotransposon protein, putative, unclassified FN3119-S Chr7 9367001 9391000 0 0 Deletion 23999 LOC_Os07g16100 retrotransposon protein, putative, unclassified FN3119-S Chr7 9367001 9391000 0 0 Deletion 23999 LOC_Os07g16110 retrotransposon protein, putative, Ty3-gypsy subclass FN3119-S Chr7 9367001 9391000 0 0 Deletion 23999 LOC_Os07g16120 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr8 10382955 10382956 0 0 Deletion 1 upstream_gene_variant HET FN3119-S Chr8 13288765 13288766 0 0 Deletion 1 INTERGENIC HET FN3119-S Chr8 15790001 15815000 0 0 Deletion 24999 LOC_Os08g25960 transposon protein, putative, unclassified, expressed FN3119-S Chr8 15790001 15815000 0 0 Deletion 24999 LOC_Os08g25970 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr8 15790001 15815000 0 0 Deletion 24999 LOC_Os08g25980 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr8 15790001 15815000 0 0 Deletion 24999 LOC_Os08g25990 alcohol oxidase-related, putative, expressed FN3119-S Chr8 16304682 16304682 0 0 Insertion 1 downstream_gene_variant HET FN3119-S Chr8 18650001 18672000 0 0 Deletion 21999 LOC_Os08g30320 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3119-S Chr8 18650001 18672000 0 0 Deletion 21999 LOC_Os08g30330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3119-S Chr8 18650001 18672000 0 0 Deletion 21999 LOC_Os08g30590 C1-like domain containing protein, expressed FN3119-S Chr8 18845001 18861000 0 0 Deletion 15999 LOC_Os08g30600 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3119-S Chr8 18845001 18861000 0 0 Deletion 15999 LOC_Os08g30900 YDG/SRA domain containing protein, expressed FN3119-S Chr8 24077247 Chr4 20494329 0 Translocation 0 FN3119-S Chr8 26389723 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3119-S Chr8 4203273 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3119-S Chr8 5894001 5907000 0 0 Deletion 12999 LOC_Os08g10160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr8 5894001 5907000 0 0 Deletion 12999 LOC_Os08g10180 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr8 5894001 5907000 0 0 Deletion 12999 LOC_Os08g10310 SHR5-receptor-like kinase, putative, expressed FN3119-S Chr8 7060001 7087000 0 0 Deletion 26999 LOC_Os08g12040 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr8 7060001 7087000 0 0 Deletion 26999 LOC_Os08g13490 expressed protein FN3119-S Chr8 771383 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3119-S Chr9 11027001 11050000 0 0 Deletion 22999 LOC_Os09g18020 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN3119-S Chr9 11027001 11050000 0 0 Deletion 22999 LOC_Os09g18360 expressed protein FN3119-S Chr9 12139569 12139569 0 0 Insertion 12 downstream_gene_variant HET FN3119-S Chr9 13390001 13406000 0 0 Deletion 15999 LOC_Os09g22120 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr9 13390001 13406000 0 0 Deletion 15999 LOC_Os09g22130 expressed protein FN3119-S Chr9 13390001 13406000 0 0 Deletion 15999 LOC_Os09g22140 expressed protein FN3119-S Chr9 13390001 13406000 0 0 Deletion 15999 LOC_Os09g23460 expressed protein FN3119-S Chr9 13710546 13710562 0 0 Deletion 16 INTRON HET FN3119-S Chr9 17184151 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3119-S Chr9 22453001 22495000 0 0 Deletion 41999 LOC_Os09g39120 thiol protease SEN102 precursor, putative, expressed FN3119-S Chr9 22453001 22495000 0 0 Deletion 41999 LOC_Os09g39130 expressed protein FN3119-S Chr9 22453001 22495000 0 0 Deletion 41999 LOC_Os09g39140 vignain precursor, putative, expressed FN3119-S Chr9 22453001 22495000 0 0 Deletion 41999 LOC_Os09g39150 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3119-S Chr9 22453001 22495000 0 0 Deletion 41999 LOC_Os09g39160 thiol protease SEN102 precursor, putative, expressed FN3119-S Chr9 22453001 22495000 0 0 Deletion 41999 LOC_Os09g39170 cysteine proteinase COT44 precursor, putative, expressed FN3119-S Chr9 2821364 2821364 0 0 Insertion 1 intergenic_region HET FN3119-S Chr9 2843673 2843674 0 0 Deletion 1 intergenic_region HET FN3119-S Chr9 5730512 5730512 0 0 Insertion 1 upstream_gene_variant HET FN3119-S Chr9 7160001 7171000 0 0 Deletion 10999 LOC_Os09g12900 expressed protein FN3119-S Chr9 7769519 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3119-S Chr9 8820386 8820387 0 0 Deletion 1 downstream_gene_variant HET FN3119-S Chr9 9120001 9133000 0 0 Deletion 12999 LOC_Os09g15120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr9 9175001 9193000 0 0 Deletion 17999 LOC_Os09g15130 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3119-S Chr9 9175001 9193000 0 0 Deletion 17999 LOC_Os09g15140 retrotransposon protein, putative, unclassified, expressed FN3119-S Chr9 9175001 9193000 0 0 Deletion 17999 LOC_Os09g16540 protein kinase, putative, expressed FN3119-S Chr9 9531671 C-T 0 0 Single Base Substitution 0 SPLICE_SITE_ACCEPTOR HET LOC_Os09g15610 transposon protein, putative, CACTA, En/Spm sub-class