FN3123-S Chr1 14981503 14981504 0 0 Deletion 1 upstream_gene_variant HET FN3123-S Chr1 25662281 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g45220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3123-S Chr1 25662282 G-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os01g45220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3123-S Chr1 26191753 26202278 0 0 Inversion 10525 FN3123-S Chr1 26191757 26203109 0 0 Inversion 11352 FN3123-S Chr1 30808855 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3123-S Chr1 34925376 34925379 0 0 Deletion 3 inframe_deletion HET LOC_Os01g60380 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3123-S Chr1 34932501 34932501 0 0 Insertion 1 upstream_gene_variant HET FN3123-S Chr1 36116700 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3123-S Chr1 37216456 37216458 0 0 Deletion 2 frameshift_variant HET LOC_Os01g64070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3123-S Chr1 37533038 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3123-S Chr10 17004309 17004313 0 0 Deletion 4 INTERGENIC HET FN3123-S Chr10 17472312 G-A 0 0 Single Base Substitution 0 INTRON HET FN3123-S Chr10 1899448 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g04110 MLA6 protein, putative, expressed FN3123-S Chr10 2381387 2381387 0 0 Insertion 1 upstream_gene_variant HET FN3123-S Chr10 2579147 2579148 0 0 Deletion 1 intergenic_region HET FN3123-S Chr10 4908267 4908309 0 0 Deletion 42 upstream_gene_variant HET FN3123-S Chr10 5024912 Chr7 18415509 0 Translocation 0 FN3123-S Chr10 5082311 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3123-S Chr10 5353240 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3123-S Chr10 6855452 6855453 0 0 Deletion 1 upstream_gene_variant HET FN3123-S Chr11 12299823 12299988 0 0 Deletion 165 intergenic_region HET FN3123-S Chr11 12327967 12327968 0 0 Deletion 1 intergenic_region HET FN3123-S Chr11 12641080 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3123-S Chr11 14087894 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3123-S Chr11 24611690 Chr2 16445387 0 Translocation 0 FN3123-S Chr11 3916293 Chr9 7742217 0 Translocation 0 FN3123-S Chr11 5970001 5979000 0 0 Deletion 8999 LOC_Os11g10840 expressed protein FN3123-S Chr11 5970001 5979000 0 0 Deletion 8999 LOC_Os11g10850 dirigent, putative, expressed FN3123-S Chr11 5970001 5979000 0 0 Deletion 8999 LOC_Os11g11170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3123-S Chr11 7286199 7286200 0 0 Deletion 1 upstream_gene_variant HET FN3123-S Chr12 12029895 12029896 0 0 Deletion 1 intergenic_region HET FN3123-S Chr12 15945101 15945101 0 0 Insertion 1 upstream_gene_variant HET FN3123-S Chr12 16959285 Chr8 6751662 0 Translocation 0 FN3123-S Chr12 2005216 Chr6 23454864 0 Translocation 0 FN3123-S Chr12 8374162 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3123-S Chr2 1270309 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3123-S Chr2 16129842 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3123-S Chr2 16491378 Chr1 26063488 0 Translocation 0 LOC_Os01g45880 retrotransposon protein, putative, unclassified, expressed FN3123-S Chr2 16491378 Chr1 26063488 0 Translocation 0 LOC_Os02g27850 retrotransposon protein, putative, unclassified, expressed FN3123-S Chr2 17603592 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3123-S Chr2 21652313 21652314 0 0 Deletion 1 intergenic_region HET FN3123-S Chr2 2446226 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3123-S Chr2 7236977 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3123-S Chr3 14412655 14412665 0 0 Deletion 10 upstream_gene_variant HET FN3123-S Chr3 14795365 A-G 0 0 Single Base Substitution 0 INTRON HET FN3123-S Chr3 15788092 T-A 0 0 Single Base Substitution 0 INTRON HET FN3123-S Chr3 19578743 19578743 0 0 Insertion 1 intergenic_region HET FN3123-S Chr3 23143532 23143532 0 0 Insertion 1 frameshift_variant HET LOC_Os03g41624 retrotransposon, putative, centromere-specific, expressed FN3123-S Chr3 27392532 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3123-S Chr3 30121001 30151000 0 0 Deletion 29999 LOC_Os03g52500 expressed protein FN3123-S Chr3 30121001 30151000 0 0 Deletion 29999 LOC_Os03g52510 retrotransposon protein, putative, unclassified, expressed FN3123-S Chr3 30121001 30151000 0 0 Deletion 29999 LOC_Os03g52520 retrotransposon protein, putative, unclassified, expressed FN3123-S Chr3 30121001 30151000 0 0 Deletion 29999 LOC_Os03g52530 retrotransposon protein, putative, Ty3-gypsy subclass FN3123-S Chr3 30121001 30151000 0 0 Deletion 29999 LOC_Os03g52540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3123-S Chr3 30121001 30151000 0 0 Deletion 29999 LOC_Os03g52550 retrotransposon protein, putative, unclassified, expressed FN3123-S Chr3 30121001 30151000 0 0 Deletion 29999 LOC_Os03g52560 glycosyl hydrolases, putative, expressed FN3123-S Chr3 30121001 30151000 0 0 Deletion 29999 LOC_Os03g53680 expressed protein FN3123-S Chr3 35370486 35370487 0 0 Deletion 1 upstream_gene_variant HET FN3123-S Chr4 10939431 A-T 0 0 Single Base Substitution 0 INTRON HET FN3123-S Chr4 10972408 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3123-S Chr4 13744416 13744416 0 0 Insertion 1 splice_donor_variant&intron_variant HET LOC_Os04g24060 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3123-S Chr4 14908388 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3123-S Chr4 14979650 14979656 0 0 Deletion 6 upstream_gene_variant HET FN3123-S Chr4 7420514 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g13350 retrotransposon protein, putative, unclassified, expressed FN3123-S Chr5 10637001 10670000 0 0 Deletion 32999 LOC_Os05g18410 retrotransposon protein, putative, Ty1-copia subclass FN3123-S Chr5 10637001 10670000 0 0 Deletion 32999 LOC_Os05g18419 retrotransposon, putative, centromere-specific FN3123-S Chr5 10637001 10670000 0 0 Deletion 32999 LOC_Os05g18446 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3123-S Chr5 10637001 10670000 0 0 Deletion 32999 LOC_Os05g18880 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3123-S Chr5 13116286 13116292 0 0 Deletion 6 INTERGENIC HOMO FN3123-S Chr5 15316692 15316693 0 0 Deletion 1 upstream_gene_variant HET FN3123-S Chr5 16465941 Chr1 22929326 0 Translocation 0 LOC_Os01g40600 coiled-coil domain-containing protein, putative, expressed FN3123-S Chr5 169904 169904 0 0 Insertion 6 INTERGENIC HET FN3123-S Chr5 211400 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3123-S Chr5 211406 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3123-S Chr5 2212801 2212801 0 0 Insertion 2 INTERGENIC HET FN3123-S Chr5 263229 263230 0 0 Deletion 1 INTERGENIC HOMO FN3123-S Chr5 29879238 29879238 0 0 Insertion 1 downstream_gene_variant HET FN3123-S Chr5 9847410 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3123-S Chr6 10332684 10332684 0 0 Insertion 1 frameshift_variant HET LOC_Os06g17820 retrotransposon protein, putative, unclassified, expressed FN3123-S Chr6 11579510 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3123-S Chr6 14270898 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3123-S Chr6 18208057 Chr4 19200853 0 Translocation 0 FN3123-S Chr6 21417549 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3123-S Chr6 25479519 25479540 0 0 Deletion 21 downstream_gene_variant HET FN3123-S Chr6 29987791 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3123-S Chr6 4524273 4524285 0 0 Deletion 12 upstream_gene_variant HET FN3123-S Chr6 592202 T-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3123-S Chr6 8843365 Chr4 843232 0 Translocation 0 FN3123-S Chr7 21176489 A-G 0 0 Single Base Substitution 0 INTRON HET FN3123-S Chr7 22224792 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3123-S Chr7 23256190 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3123-S Chr7 23256191 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3123-S Chr7 24860406 24860406 0 0 Insertion 1 upstream_gene_variant HET FN3123-S Chr7 25283413 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3123-S Chr7 28914670 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3123-S Chr7 29676323 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3123-S Chr7 4240740 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3123-S Chr7 9479904 Chr4 21780655 0 Translocation 0 FN3123-S Chr8 20767901 20767910 0 0 Deletion 9 upstream_gene_variant HET FN3123-S Chr8 2103867 2103897 0 0 Deletion 30 upstream_gene_variant HET FN3123-S Chr8 2693342 2693342 0 0 Insertion 2 INTERGENIC HET FN3123-S Chr8 430819 430829 0 0 Deletion 10 downstream_gene_variant HET FN3123-S Chr8 6988079 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3123-S Chr8 8130054 8130056 0 0 Deletion 2 INTERGENIC HET FN3123-S Chr8 9306285 Chr3 19340972 0 Translocation 0 LOC_Os03g33860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3123-S Chr8 9306285 Chr3 19340972 0 Translocation 0 LOC_Os08g15300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3123-S Chr9 10257653 10257654 0 0 Deletion 1 upstream_gene_variant HET FN3123-S Chr9 4781773 4781773 0 0 Insertion 2 INTERGENIC HET FN3123-S Chr9 4904955 4904963 0 0 Deletion 8 upstream_gene_variant HET FN3123-S Chr9 6626482 Chr7 12641493 0 Translocation 0 LOC_Os07g22480 retrotransposon, putative, centromere-specific, expressed FN3123-S Chr9 6626483 Chr1 33271556 0 Translocation 0 FN3123-S Chr9 7392355 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3123-S Chr9 7988496 7988509 0 0 Deletion 13 frameshift_variant HET LOC_Os09g13670 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3123-S Chr9 8774247 Chr1 33271563 0 Translocation 0 FN3123-S Chr9 8774253 Chr7 12642586 0 Translocation 0