FN3126-S Chr1 1020001 1035000 0 0 Deletion 14999 LOC_Os01g07830 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr1 10229001 10259000 0 0 Deletion 29999 LOC_Os01g18260 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr1 10229001 10259000 0 0 Deletion 29999 LOC_Os01g18270 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr1 10229001 10259000 0 0 Deletion 29999 LOC_Os01g18280 SNF7 domain containing protein, putative, expressed FN3126-S Chr1 11013001 11041000 0 0 Deletion 27999 LOC_Os01g19470 nodal modulator 1 precursor, putative, expressed FN3126-S Chr1 11013001 11041000 0 0 Deletion 27999 LOC_Os01g19640 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr1 11332991 11333060 0 0 Deletion 69 disruptive_inframe_deletion HET LOC_Os01g19960 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr1 11513001 11543000 0 0 Deletion 29999 LOC_Os01g20208 expressed protein FN3126-S Chr1 11513001 11543000 0 0 Deletion 29999 LOC_Os01g20700 hypothetical protein FN3126-S Chr1 11513001 11543000 0 0 Deletion 29999 LOC_Os01g20710 expressed protein FN3126-S Chr1 11513001 11543000 0 0 Deletion 29999 LOC_Os01g20720 CC-NBS-LRR, putative, expressed FN3126-S Chr1 11716001 11739000 0 0 Deletion 22999 LOC_Os01g20990 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 11716001 11739000 0 0 Deletion 22999 LOC_Os01g21000 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 11716001 11739000 0 0 Deletion 22999 LOC_Os01g21010 expressed protein FN3126-S Chr1 11716001 11739000 0 0 Deletion 22999 LOC_Os01g21020 expressed protein FN3126-S Chr1 12034001 12056000 0 0 Deletion 21999 LOC_Os01g21536 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr1 12034001 12056000 0 0 Deletion 21999 LOC_Os01g21542 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 12034001 12056000 0 0 Deletion 21999 LOC_Os01g21630 pectinacetylesterase domain containing protein, expressed FN3126-S Chr1 12119001 12144000 0 0 Deletion 24999 LOC_Os01g21640 expressed protein FN3126-S Chr1 12119001 12144000 0 0 Deletion 24999 LOC_Os01g21650 plant protein of unknown function domain containing protein, expressed FN3126-S Chr1 12119001 12144000 0 0 Deletion 24999 LOC_Os01g21710 plant protein of unknown function domain containing protein, expressed FN3126-S Chr1 12183001 12197000 0 0 Deletion 13999 LOC_Os01g21720 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr1 12183001 12197000 0 0 Deletion 13999 LOC_Os01g22190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr1 12286822 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3126-S Chr1 12473001 12490000 0 0 Deletion 16999 LOC_Os01g22200 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr1 12473001 12490000 0 0 Deletion 16999 LOC_Os01g22209 expressed protein FN3126-S Chr1 12473001 12490000 0 0 Deletion 16999 LOC_Os01g23530 terpene synthase, putative, expressed FN3126-S Chr1 13214001 13231000 0 0 Deletion 16999 LOC_Os01g23540 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 13214001 13231000 0 0 Deletion 16999 LOC_Os01g23550 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 13214001 13231000 0 0 Deletion 16999 LOC_Os01g23560 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 13214001 13231000 0 0 Deletion 16999 LOC_Os01g23630 transcription initiation factor IID, 18kD subunit family protein, expressed FN3126-S Chr1 13293001 13302000 0 0 Deletion 8999 LOC_Os01g23640 mov34/MPN/PAD-1 family protein, expressed FN3126-S Chr1 13293001 13302000 0 0 Deletion 8999 LOC_Os01g24670 expressed protein FN3126-S Chr1 13884001 13900000 0 0 Deletion 15999 LOC_Os01g24680 3-hydroxyacyl-CoA dehydrogenase, putative, expressed FN3126-S Chr1 13884001 13900000 0 0 Deletion 15999 LOC_Os01g24690 60S ribosomal protein L23A, putative, expressed FN3126-S Chr1 13884001 13900000 0 0 Deletion 15999 LOC_Os01g24700 expressed protein FN3126-S Chr1 13884001 13900000 0 0 Deletion 15999 LOC_Os01g25330 SAC9, putative, expressed FN3126-S Chr1 14310001 14329000 0 0 Deletion 18999 LOC_Os01g25340 expressed protein FN3126-S Chr1 14310001 14329000 0 0 Deletion 18999 LOC_Os01g25360 esterase, putative, expressed FN3126-S Chr1 14310001 14329000 0 0 Deletion 18999 LOC_Os01g25370 SUMO protease, putative, expressed FN3126-S Chr1 14310001 14329000 0 0 Deletion 18999 LOC_Os01g25402 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr1 14369001 14383000 0 0 Deletion 13999 LOC_Os01g25450 AIG1 family protein, expressed FN3126-S Chr1 14424001 14437000 0 0 Deletion 12999 LOC_Os01g25710 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr1 14577001 14601000 0 0 Deletion 23999 LOC_Os01g25710 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr1 14577001 14601000 0 0 Deletion 23999 LOC_Os01g25720 disease resistance protein RGA4, putative, expressed FN3126-S Chr1 14577001 14601000 0 0 Deletion 23999 LOC_Os01g25730 retrotransposon protein, putative, unclassified FN3126-S Chr1 14577001 14601000 0 0 Deletion 23999 LOC_Os01g25740 powdery mildew resistance protein PM3F, putative, expressed FN3126-S Chr1 14577001 14601000 0 0 Deletion 23999 LOC_Os01g25760 powdery mildew resistance protein PM3F, putative, expressed FN3126-S Chr1 14577001 14601000 0 0 Deletion 23999 LOC_Os01g25820 respiratory burst oxidase, putative, expressed FN3126-S Chr1 15324001 15352000 0 0 Deletion 27999 LOC_Os01g27449 expressed protein FN3126-S Chr1 15324001 15352000 0 0 Deletion 27999 LOC_Os01g27470 ubiquitin family domain containing protein, expressed FN3126-S Chr1 15324001 15352000 0 0 Deletion 27999 LOC_Os01g27480 glutathione S-transferase, putative, expressed FN3126-S Chr1 15324001 15352000 0 0 Deletion 27999 LOC_Os01g27490 leucoanthocyanidin dioxygenase, putative, expressed FN3126-S Chr1 15324001 15352000 0 0 Deletion 27999 LOC_Os01g27500 expressed protein FN3126-S Chr1 15407001 15426000 0 0 Deletion 18999 LOC_Os01g27640 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 15407001 15426000 0 0 Deletion 18999 LOC_Os01g27650 pentatricopeptide, putative, expressed FN3126-S Chr1 15407001 15426000 0 0 Deletion 18999 LOC_Os01g28370 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr1 15750005 15750005 0 0 Insertion 1 intron_variant HET FN3126-S Chr1 15922001 15989000 0 0 Deletion 66999 LOC_Os01g28420 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr1 15922001 15989000 0 0 Deletion 66999 LOC_Os01g28440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr1 15922001 15989000 0 0 Deletion 66999 LOC_Os01g28450 SCP-like extracellular protein, expressed FN3126-S Chr1 15922001 15989000 0 0 Deletion 66999 LOC_Os01g28474 transferase family protein, putative, expressed FN3126-S Chr1 15922001 15989000 0 0 Deletion 66999 LOC_Os01g28490 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr1 15922001 15989000 0 0 Deletion 66999 LOC_Os01g28500 SCP-like extracellular protein, expressed FN3126-S Chr1 15922001 15989000 0 0 Deletion 66999 LOC_Os01g28510 expressed protein FN3126-S Chr1 15922001 15989000 0 0 Deletion 66999 LOC_Os01g28520 OsFBX8 - F-box domain containing protein, expressed FN3126-S Chr1 15922001 15989000 0 0 Deletion 66999 LOC_Os01g28530 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr1 15922001 15989000 0 0 Deletion 66999 LOC_Os01g28540 stress regulated protein, putative, expressed FN3126-S Chr1 15922001 15989000 0 0 Deletion 66999 LOC_Os01g28550 retrotransposon protein, putative, Ty1-copia subclass FN3126-S Chr1 15922001 15989000 0 0 Deletion 66999 LOC_Os01g28560 retrotransposon protein, putative, Ty1-copia subclass FN3126-S Chr1 16111001 16142000 0 0 Deletion 30999 LOC_Os01g28770 hypothetical protein FN3126-S Chr1 16111001 16142000 0 0 Deletion 30999 LOC_Os01g28780 hypothetical protein FN3126-S Chr1 16111001 16142000 0 0 Deletion 30999 LOC_Os01g28790 PRAS-rich protein, putative, expressed FN3126-S Chr1 16111001 16142000 0 0 Deletion 30999 LOC_Os01g28800 retrotransposon protein, putative, unclassified FN3126-S Chr1 16111001 16142000 0 0 Deletion 30999 LOC_Os01g28810 expressed protein FN3126-S Chr1 16111001 16142000 0 0 Deletion 30999 LOC_Os01g29180 expressed protein FN3126-S Chr1 16354001 16383000 0 0 Deletion 28999 LOC_Os01g29190 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 16354001 16383000 0 0 Deletion 28999 LOC_Os01g29200 transposon protein, putative, unclassified FN3126-S Chr1 16354001 16383000 0 0 Deletion 28999 LOC_Os01g29210 hypothetical protein FN3126-S Chr1 16354001 16383000 0 0 Deletion 28999 LOC_Os01g29220 expressed protein FN3126-S Chr1 16354001 16383000 0 0 Deletion 28999 LOC_Os01g29230 expressed protein FN3126-S Chr1 16411001 16425000 0 0 Deletion 13999 LOC_Os01g29280 expressed protein FN3126-S Chr1 16411001 16425000 0 0 Deletion 13999 LOC_Os01g29290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr1 16411001 16425000 0 0 Deletion 13999 LOC_Os01g29300 hypothetical protein FN3126-S Chr1 16411001 16425000 0 0 Deletion 13999 LOC_Os01g29310 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 16411001 16425000 0 0 Deletion 13999 LOC_Os01g29370 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 16444516 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3126-S Chr1 16462001 16473000 0 0 Deletion 10999 LOC_Os01g29380 retrotransposon protein, putative, unclassified FN3126-S Chr1 16462001 16473000 0 0 Deletion 10999 LOC_Os01g29390 expressed protein FN3126-S Chr1 16462001 16473000 0 0 Deletion 10999 LOC_Os01g29409 tRNA methyltransferase, putative, expressed FN3126-S Chr1 16490001 16514000 0 0 Deletion 23999 LOC_Os01g29430 tetratricopeptide-like helical, putative, expressed FN3126-S Chr1 16490001 16514000 0 0 Deletion 23999 LOC_Os01g29450 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 16490001 16514000 0 0 Deletion 23999 LOC_Os01g29469 dual specificity protein phosphatase, putative, expressed FN3126-S Chr1 16598001 16615000 0 0 Deletion 16999 LOC_Os01g29640 expressed protein FN3126-S Chr1 16598001 16615000 0 0 Deletion 16999 LOC_Os01g29690 expressed protein FN3126-S Chr1 16636001 16701000 0 0 Deletion 64999 LOC_Os01g29700 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr1 16636001 16701000 0 0 Deletion 64999 LOC_Os01g29710 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr1 16636001 16701000 0 0 Deletion 64999 LOC_Os01g29720 expressed protein FN3126-S Chr1 16636001 16701000 0 0 Deletion 64999 LOC_Os01g29730 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr1 16636001 16701000 0 0 Deletion 64999 LOC_Os01g29740 expressed protein FN3126-S Chr1 16636001 16701000 0 0 Deletion 64999 LOC_Os01g29750 transposon protein, putative, unclassified, expressed FN3126-S Chr1 16636001 16701000 0 0 Deletion 64999 LOC_Os01g29760 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 16636001 16701000 0 0 Deletion 64999 LOC_Os01g29780 expressed protein FN3126-S Chr1 16636001 16701000 0 0 Deletion 64999 LOC_Os01g29790 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 16636001 16701000 0 0 Deletion 64999 LOC_Os01g29804 expressed protein FN3126-S Chr1 16636001 16701000 0 0 Deletion 64999 LOC_Os01g31250 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr1 17089001 17109000 0 0 Deletion 19999 LOC_Os01g31260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr1 17089001 17109000 0 0 Deletion 19999 LOC_Os01g31270 annexin, putative, expressed FN3126-S Chr1 17089001 17109000 0 0 Deletion 19999 LOC_Os01g31460 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 17205001 17217000 0 0 Deletion 11999 LOC_Os01g31714 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 17362001 17419000 0 0 Deletion 56999 LOC_Os01g31730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr1 17362001 17419000 0 0 Deletion 56999 LOC_Os01g31740 retrotransposon protein, putative, unclassified FN3126-S Chr1 17362001 17419000 0 0 Deletion 56999 LOC_Os01g31750 transposon protein, putative, unclassified, expressed FN3126-S Chr1 17362001 17419000 0 0 Deletion 56999 LOC_Os01g31760 acyl-ACP thioesterase, putative, expressed FN3126-S Chr1 17362001 17419000 0 0 Deletion 56999 LOC_Os01g31770 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed FN3126-S Chr1 17362001 17419000 0 0 Deletion 56999 LOC_Os01g31780 expressed protein FN3126-S Chr1 17362001 17419000 0 0 Deletion 56999 LOC_Os01g31790 transposon protein, putative, unclassified FN3126-S Chr1 17362001 17419000 0 0 Deletion 56999 LOC_Os01g32090 PPR repeat domain containing protein, putative, expressed FN3126-S Chr1 17559001 17578000 0 0 Deletion 18999 LOC_Os01g32080 thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed FN3126-S Chr1 17559001 17578000 0 0 Deletion 18999 LOC_Os01g32090 PPR repeat domain containing protein, putative, expressed FN3126-S Chr1 17559001 17578000 0 0 Deletion 18999 LOC_Os01g32100 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr1 17559001 17578000 0 0 Deletion 18999 LOC_Os01g32110 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr1 17559001 17578000 0 0 Deletion 18999 LOC_Os01g33180 hypothetical protein FN3126-S Chr1 18268001 18283000 0 0 Deletion 14999 LOC_Os01g33190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr1 18268001 18283000 0 0 Deletion 14999 LOC_Os01g33260 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 18336001 18388000 0 0 Deletion 51999 LOC_Os01g33270 hypothetical protein FN3126-S Chr1 18336001 18388000 0 0 Deletion 51999 LOC_Os01g33290 hypothetical protein FN3126-S Chr1 18336001 18388000 0 0 Deletion 51999 LOC_Os01g33300 polygalacturonase, putative, expressed FN3126-S Chr1 18336001 18388000 0 0 Deletion 51999 LOC_Os01g33324 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr1 18336001 18388000 0 0 Deletion 51999 LOC_Os01g33350 zinc-binding protein, putative, expressed FN3126-S Chr1 18336001 18388000 0 0 Deletion 51999 LOC_Os01g33360 DnaK family protein, putative, expressed FN3126-S Chr1 18336001 18388000 0 0 Deletion 51999 LOC_Os01g33370 zinc-binding protein, putative, expressed FN3126-S Chr1 18336001 18388000 0 0 Deletion 51999 LOC_Os01g33380 retrotransposon protein, putative, unclassified FN3126-S Chr1 18336001 18388000 0 0 Deletion 51999 LOC_Os01g33390 expressed protein FN3126-S Chr1 18336001 18388000 0 0 Deletion 51999 LOC_Os01g33400 helix-loop-helix DNA-binding domain containing protein, expressed FN3126-S Chr1 18948001 18971000 0 0 Deletion 22999 LOC_Os01g34374 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr1 18948001 18971000 0 0 Deletion 22999 LOC_Os01g34390 prenyltransferase, putative, expressed FN3126-S Chr1 18948001 18971000 0 0 Deletion 22999 LOC_Os01g34700 dienelactone hydrolase family protein, expressed FN3126-S Chr1 19139001 19161000 0 0 Deletion 21999 LOC_Os01g34710 transposon protein, putative, unclassified, expressed FN3126-S Chr1 19139001 19161000 0 0 Deletion 21999 LOC_Os01g34720 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 19139001 19161000 0 0 Deletion 21999 LOC_Os01g34730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr1 19263001 19277000 0 0 Deletion 13999 LOC_Os01g34910 expressed protein FN3126-S Chr1 19286001 19316000 0 0 Deletion 29999 LOC_Os01g34920 beta-galactosidase precursor, putative, expressed FN3126-S Chr1 19286001 19316000 0 0 Deletion 29999 LOC_Os01g34930 callose synthase, putative, expressed FN3126-S Chr1 19286001 19316000 0 0 Deletion 29999 LOC_Os01g35070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr1 19526477 19526477 0 0 Insertion 1 upstream_gene_variant HET FN3126-S Chr1 19624001 19649000 0 0 Deletion 24999 LOC_Os01g35470 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr1 19624001 19649000 0 0 Deletion 24999 LOC_Os01g35480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr1 19624001 19649000 0 0 Deletion 24999 LOC_Os01g35490 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr1 19624001 19649000 0 0 Deletion 24999 LOC_Os01g35504 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 19701001 19718000 0 0 Deletion 16999 LOC_Os01g35610 expressed protein FN3126-S Chr1 19701001 19718000 0 0 Deletion 16999 LOC_Os01g35620 retrotransposon protein, putative, unclassified FN3126-S Chr1 19701001 19718000 0 0 Deletion 16999 LOC_Os01g35630 retrotransposon, putative, centromere-specific, expressed FN3126-S Chr1 19701001 19718000 0 0 Deletion 16999 LOC_Os01g35700 retrotransposon protein, putative, unclassified FN3126-S Chr1 19767001 19801000 0 0 Deletion 33999 LOC_Os01g35710 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr1 19767001 19801000 0 0 Deletion 33999 LOC_Os01g35720 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr1 19767001 19801000 0 0 Deletion 33999 LOC_Os01g35730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr1 19767001 19801000 0 0 Deletion 33999 LOC_Os01g35740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr1 20181202 20181203 0 0 Deletion 1 downstream_gene_variant HET FN3126-S Chr1 20421001 20434000 0 0 Deletion 12999 LOC_Os01g36772 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr1 20421001 20434000 0 0 Deletion 12999 LOC_Os01g36780 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr1 20421001 20434000 0 0 Deletion 12999 LOC_Os01g36840 ATP-binding region, ATPase-like domain containing protein, expressed FN3126-S Chr1 20494001 20576000 0 0 Deletion 81999 LOC_Os01g36840 ATP-binding region, ATPase-like domain containing protein, expressed FN3126-S Chr1 20494001 20576000 0 0 Deletion 81999 LOC_Os01g36850 transposon protein, putative, Pong sub-class, expressed FN3126-S Chr1 20494001 20576000 0 0 Deletion 81999 LOC_Os01g36860 DEAD-box ATP-dependent RNA helicase 40, putative, expressed FN3126-S Chr1 20494001 20576000 0 0 Deletion 81999 LOC_Os01g36870 phox domain-containing protein, putative, expressed FN3126-S Chr1 20494001 20576000 0 0 Deletion 81999 LOC_Os01g36880 hypothetical protein FN3126-S Chr1 20494001 20576000 0 0 Deletion 81999 LOC_Os01g36890 DEAD-box ATP-dependent RNA helicase, putative, expressed FN3126-S Chr1 20494001 20576000 0 0 Deletion 81999 LOC_Os01g36900 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 20494001 20576000 0 0 Deletion 81999 LOC_Os01g36910 transposon protein, putative, unclassified, expressed FN3126-S Chr1 20494001 20576000 0 0 Deletion 81999 LOC_Os01g36920 DEAD-box ATP-dependent RNA helicase, putative, expressed FN3126-S Chr1 20971650 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g37550 transposon protein, putative, unclassified, expressed FN3126-S Chr1 21184001 21201000 0 0 Deletion 16999 LOC_Os01g37850 expressed protein FN3126-S Chr1 21184001 21201000 0 0 Deletion 16999 LOC_Os01g37860 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 21184001 21201000 0 0 Deletion 16999 LOC_Os01g37870 PPR repeat domain containing protein, putative, expressed FN3126-S Chr1 22143001 22173000 0 0 Deletion 29999 LOC_Os01g39350 protein kinase domain containing protein, expressed FN3126-S Chr1 22143001 22173000 0 0 Deletion 29999 LOC_Os01g39360 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 22143001 22173000 0 0 Deletion 29999 LOC_Os01g39370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr1 22143001 22173000 0 0 Deletion 29999 LOC_Os01g39380 SCD1, putative, expressed FN3126-S Chr1 22143001 22173000 0 0 Deletion 29999 LOC_Os01g40230 transposon protein, putative, unclassified, expressed FN3126-S Chr1 22705001 22731000 0 0 Deletion 25999 LOC_Os01g40240 expressed protein FN3126-S Chr1 22705001 22731000 0 0 Deletion 25999 LOC_Os01g40250 down-regulated in metastasis family protein, expressed FN3126-S Chr1 22705001 22731000 0 0 Deletion 25999 LOC_Os01g40990 expressed protein FN3126-S Chr1 23198001 23216000 0 0 Deletion 17999 LOC_Os01g40990 expressed protein FN3126-S Chr1 23198001 23216000 0 0 Deletion 17999 LOC_Os01g41000 ZCW7, putative, expressed FN3126-S Chr1 23263001 23274000 0 0 Deletion 10999 LOC_Os01g41080 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 23263001 23274000 0 0 Deletion 10999 LOC_Os01g41090 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 23263001 23274000 0 0 Deletion 10999 LOC_Os01g41750 expressed protein FN3126-S Chr1 23632001 23646000 0 0 Deletion 13999 LOC_Os01g41760 expressed protein FN3126-S Chr1 23632001 23646000 0 0 Deletion 13999 LOC_Os01g41770 leucine rich repeat protein, putative, expressed FN3126-S Chr1 23632001 23646000 0 0 Deletion 13999 LOC_Os01g41810 cytochrome P450 72A1, putative, expressed FN3126-S Chr1 23669001 23693000 0 0 Deletion 23999 LOC_Os01g41810 cytochrome P450 72A1, putative, expressed FN3126-S Chr1 23669001 23693000 0 0 Deletion 23999 LOC_Os01g41820 cytochrome P450 72A1, putative, expressed FN3126-S Chr1 23669001 23693000 0 0 Deletion 23999 LOC_Os01g41834 chalcone synthase, putative, expressed FN3126-S Chr1 25051001 25061000 0 0 Deletion 9999 LOC_Os01g43740 cytochrome P450 72A1, putative, expressed FN3126-S Chr1 25051001 25061000 0 0 Deletion 9999 LOC_Os01g46169 GDSL-like lipase/acylhydrolase, putative, expressed FN3126-S Chr1 27884001 27899000 0 0 Deletion 14999 LOC_Os01g48650 expressed protein FN3126-S Chr1 27884001 27899000 0 0 Deletion 14999 LOC_Os01g48660 expressed protein FN3126-S Chr1 27884001 27899000 0 0 Deletion 14999 LOC_Os01g48930 splicing factor-related, putative, expressed FN3126-S Chr1 28077001 28096000 0 0 Deletion 18999 LOC_Os01g48940 expressed protein FN3126-S Chr1 28077001 28096000 0 0 Deletion 18999 LOC_Os01g48950 expressed protein FN3126-S Chr1 28077001 28096000 0 0 Deletion 18999 LOC_Os01g48960 glutamate synthase, chloroplast precursor, putative, expressed FN3126-S Chr1 28077001 28096000 0 0 Deletion 18999 LOC_Os01g49614 Protein kinase domain containing protein, expressed FN3126-S Chr1 28534001 28558000 0 0 Deletion 23999 LOC_Os01g49630 proteophosphoglycan ppg4, putative, expressed FN3126-S Chr1 28534001 28558000 0 0 Deletion 23999 LOC_Os01g49640 LTPL149 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3126-S Chr1 28534001 28558000 0 0 Deletion 23999 LOC_Os01g49650 LTPL150 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3126-S Chr1 28534001 28558000 0 0 Deletion 23999 LOC_Os01g49660 reticulon domain containing protein, putative, expressed FN3126-S Chr1 28534001 28558000 0 0 Deletion 23999 LOC_Os01g49670 cytidylyltransferase domain containing protein, expressed FN3126-S Chr1 28534001 28558000 0 0 Deletion 23999 LOC_Os01g49680 DNA repair helicase XPB2, putative, expressed FN3126-S Chr1 28534001 28558000 0 0 Deletion 23999 LOC_Os01g49690 Ser/Thr protein phosphatase family protein, putative, expressed FN3126-S Chr1 28701001 28720000 0 0 Deletion 18999 LOC_Os01g49950 transposon protein, putative, unclassified, expressed FN3126-S Chr1 28701001 28720000 0 0 Deletion 18999 LOC_Os01g49960 expressed protein FN3126-S Chr1 28701001 28720000 0 0 Deletion 18999 LOC_Os01g49970 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 28701001 28720000 0 0 Deletion 18999 LOC_Os01g49980 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 28859116 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g50220 retrotransposon protein, putative, LINE subclass, expressed FN3126-S Chr1 29401001 29413000 0 0 Deletion 11999 LOC_Os01g51170 glycylpeptide N-tetradecanoyltransferase 1, putative, expressed FN3126-S Chr1 29401001 29413000 0 0 Deletion 11999 LOC_Os01g51220 transport protein particle component, Bet3, domain containing protein, expressed FN3126-S Chr1 29442001 29464000 0 0 Deletion 21999 LOC_Os01g51230 IQ calmodulin-binding motif domain containing protein, expressed FN3126-S Chr1 29442001 29464000 0 0 Deletion 21999 LOC_Os01g51240 hypothetical protein FN3126-S Chr1 29442001 29464000 0 0 Deletion 21999 LOC_Os01g51250 mitochondrial carrier protein, putative, expressed FN3126-S Chr1 29442001 29464000 0 0 Deletion 21999 LOC_Os01g51800 expressed protein FN3126-S Chr1 29784001 29800000 0 0 Deletion 15999 LOC_Os01g51810 pentatricopeptide, putative, expressed FN3126-S Chr1 29784001 29800000 0 0 Deletion 15999 LOC_Os01g51820 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr1 29784001 29800000 0 0 Deletion 15999 LOC_Os01g51830 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr1 29784001 29800000 0 0 Deletion 15999 LOC_Os01g52214 ubiquinone oxidoreductase, putative, expressed FN3126-S Chr1 30020001 30047000 0 0 Deletion 26999 LOC_Os01g52230 phosphoethanolamine/phosphocholine phosphatase, putative, expressed FN3126-S Chr1 30020001 30047000 0 0 Deletion 26999 LOC_Os01g52240 chlorophyll A-B binding protein, putative, expressed FN3126-S Chr1 30020001 30047000 0 0 Deletion 26999 LOC_Os01g52250 starch synthase, putative, expressed FN3126-S Chr1 30020001 30047000 0 0 Deletion 26999 LOC_Os01g52260 serine acetyltransferase protein, putative, expressed FN3126-S Chr1 30069001 30088000 0 0 Deletion 18999 LOC_Os01g52330 NB-ARC domain containing protein, expressed FN3126-S Chr1 30069001 30088000 0 0 Deletion 18999 LOC_Os01g52340 NB-ARC domain containing protein, expressed FN3126-S Chr1 30069001 30088000 0 0 Deletion 18999 LOC_Os01g52370 expressed protein FN3126-S Chr1 30069001 30088000 0 0 Deletion 18999 LOC_Os01g53900 elongation factor, putative, expressed FN3126-S Chr1 31187001 31244000 0 0 Deletion 56999 LOC_Os01g54230 expressed protein FN3126-S Chr1 31187001 31244000 0 0 Deletion 56999 LOC_Os01g54240 nucleoporin, putative, expressed FN3126-S Chr1 31187001 31244000 0 0 Deletion 56999 LOC_Os01g54250 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 31187001 31244000 0 0 Deletion 56999 LOC_Os01g54260 retrotransposon protein, putative, unclassified FN3126-S Chr1 31187001 31244000 0 0 Deletion 56999 LOC_Os01g54270 transposon protein, putative, unclassified, expressed FN3126-S Chr1 31187001 31244000 0 0 Deletion 56999 LOC_Os01g54280 conserved hypothetical protein FN3126-S Chr1 31187001 31244000 0 0 Deletion 56999 LOC_Os01g54290 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 31187001 31244000 0 0 Deletion 56999 LOC_Os01g55650 phospholipase, patatin family, putative, expressed FN3126-S Chr1 32063001 32091000 0 0 Deletion 27999 LOC_Os01g55670 expressed protein FN3126-S Chr1 32063001 32091000 0 0 Deletion 27999 LOC_Os01g55690 glutelin, putative, expressed FN3126-S Chr1 32063001 32091000 0 0 Deletion 27999 LOC_Os01g55700 NLI interacting factor-like phosphatase, putative, expressed FN3126-S Chr1 32063001 32091000 0 0 Deletion 27999 LOC_Os01g55710 DNA-binding protein, putative, expressed FN3126-S Chr1 32063001 32091000 0 0 Deletion 27999 LOC_Os01g55720 expressed protein FN3126-S Chr1 32063001 32091000 0 0 Deletion 27999 LOC_Os01g55940 OsGH3.2 - Probable indole-3-acetic acid-amido synthetase, expressed FN3126-S Chr1 32225001 32249000 0 0 Deletion 23999 LOC_Os01g55950 acetamidase, putative, expressed FN3126-S Chr1 32225001 32249000 0 0 Deletion 23999 LOC_Os01g55960 pentatricopeptide, putative, expressed FN3126-S Chr1 32225001 32249000 0 0 Deletion 23999 LOC_Os01g55974 deoxycytidylate deaminase, putative, expressed FN3126-S Chr1 32225001 32249000 0 0 Deletion 23999 LOC_Os01g55990 expressed protein FN3126-S Chr1 32225001 32249000 0 0 Deletion 23999 LOC_Os01g56000 RNA recognition motif containing protein, expressed FN3126-S Chr1 32225001 32249000 0 0 Deletion 23999 LOC_Os01g56200 BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed FN3126-S Chr1 32465001 32513000 0 0 Deletion 47999 LOC_Os01g56340 transposon protein, putative, unclassified, expressed FN3126-S Chr1 32465001 32513000 0 0 Deletion 47999 LOC_Os01g56350 PTAC12, putative, expressed FN3126-S Chr1 32465001 32513000 0 0 Deletion 47999 LOC_Os01g56360 wax synthase, putative, expressed FN3126-S Chr1 32465001 32513000 0 0 Deletion 47999 LOC_Os01g56370 wax synthase, putative, expressed FN3126-S Chr1 32465001 32513000 0 0 Deletion 47999 LOC_Os01g56380 decarboxylase, putative, expressed FN3126-S Chr1 32465001 32513000 0 0 Deletion 47999 LOC_Os01g56390 OsFBX26 - F-box domain containing protein, expressed FN3126-S Chr1 32578001 32598000 0 0 Deletion 19999 LOC_Os01g56510 periplasmic beta-glucosidase precursor, putative, expressed FN3126-S Chr1 32578001 32598000 0 0 Deletion 19999 LOC_Os01g56520 double-stranded RNA binding motif containing protein, expressed FN3126-S Chr1 32578001 32598000 0 0 Deletion 19999 LOC_Os01g56530 DUF260 domain containing protein, putative, expressed FN3126-S Chr1 32578001 32598000 0 0 Deletion 19999 LOC_Os01g56540 histone-lysine N-methyltransferase SUVR3, putative, expressed FN3126-S Chr1 32628001 32650000 0 0 Deletion 21999 LOC_Os01g56870 expressed protein FN3126-S Chr1 32845001 32880000 0 0 Deletion 34999 LOC_Os01g56880 purple acid phosphatase precursor, putative, expressed FN3126-S Chr1 32845001 32880000 0 0 Deletion 34999 LOC_Os01g56890 expressed protein FN3126-S Chr1 32845001 32880000 0 0 Deletion 34999 LOC_Os01g56900 expressed protein FN3126-S Chr1 32845001 32880000 0 0 Deletion 34999 LOC_Os01g56910 expressed protein FN3126-S Chr1 33288001 33309000 0 0 Deletion 20999 LOC_Os01g57599 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 33288001 33309000 0 0 Deletion 20999 LOC_Os01g57610 OsGH3.1 - Probable indole-3-acetic acid-amido synthetase, expressed FN3126-S Chr1 33288001 33309000 0 0 Deletion 20999 LOC_Os01g57840 expressed protein FN3126-S Chr1 33901001 33916000 0 0 Deletion 14999 LOC_Os01g58650 LTPL35 - Protease inhibitor/seed storage/LTP family protein precursor, putative FN3126-S Chr1 33901001 33916000 0 0 Deletion 14999 LOC_Os01g58660 LTPL29 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3126-S Chr1 33901001 33916000 0 0 Deletion 14999 LOC_Os01g58670 expressed protein FN3126-S Chr1 33901001 33916000 0 0 Deletion 14999 LOC_Os01g58910 auxin-induced protein 5NG4, putative, expressed FN3126-S Chr1 34973001 34991000 0 0 Deletion 17999 LOC_Os01g60490 WRKY22, expressed FN3126-S Chr1 34973001 34991000 0 0 Deletion 17999 LOC_Os01g60500 hypothetical protein FN3126-S Chr1 34973001 34991000 0 0 Deletion 17999 LOC_Os01g60810 DUF623 domain containing protein, expressed FN3126-S Chr1 35619001 35645000 0 0 Deletion 25999 LOC_Os01g61590 CAMK_CAMK_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN3126-S Chr1 35619001 35645000 0 0 Deletion 25999 LOC_Os01g61610 flavonol synthase/flavanone 3-hydroxylase, putative, expressed FN3126-S Chr1 35902001 35924000 0 0 Deletion 21999 LOC_Os01g62050 expressed protein FN3126-S Chr1 35902001 35924000 0 0 Deletion 21999 LOC_Os01g62060 plant-specific domain TIGR01589 family protein, expressed FN3126-S Chr1 35902001 35924000 0 0 Deletion 21999 LOC_Os01g62070 cation efflux family protein, putative, expressed FN3126-S Chr1 35902001 35924000 0 0 Deletion 21999 LOC_Os01g62080 serine/threonine-protein kinase AFC1, putative, expressed FN3126-S Chr1 35902001 35924000 0 0 Deletion 21999 LOC_Os01g62630 aspartic proteinase nepenthesin precursor, putative, expressed FN3126-S Chr1 35924885 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN3126-S Chr1 36268001 36284000 0 0 Deletion 15999 LOC_Os01g62640 zinc finger, C3HC4 type domain containing protein, expressed FN3126-S Chr1 36268001 36284000 0 0 Deletion 15999 LOC_Os01g62650 pumilio-family RNA binding protein, putative, expressed FN3126-S Chr1 36268001 36284000 0 0 Deletion 15999 LOC_Os01g63160 MYB family transcription factor, putative, expressed FN3126-S Chr1 36605001 36621000 0 0 Deletion 15999 LOC_Os01g63170 transposon protein, putative, unclassified, expressed FN3126-S Chr1 36605001 36621000 0 0 Deletion 15999 LOC_Os01g63180 laccase-6 precursor, putative, expressed FN3126-S Chr1 36605001 36621000 0 0 Deletion 15999 LOC_Os01g63420 OsFBL4 - F-box domain and LRR containing protein, expressed FN3126-S Chr1 36746001 36783000 0 0 Deletion 36999 LOC_Os01g63420 OsFBL4 - F-box domain and LRR containing protein, expressed FN3126-S Chr1 36746001 36783000 0 0 Deletion 36999 LOC_Os01g63430 expressed protein FN3126-S Chr1 36746001 36783000 0 0 Deletion 36999 LOC_Os01g63444 expressed protein FN3126-S Chr1 36746001 36783000 0 0 Deletion 36999 LOC_Os01g63460 MYB family transcription factor, putative, expressed FN3126-S Chr1 36746001 36783000 0 0 Deletion 36999 LOC_Os01g63470 C2 domain containing protein, expressed FN3126-S Chr1 37111001 37139000 0 0 Deletion 27999 LOC_Os01g63940 Transcription initiation factor TFIID subunit A containing protein, expressed FN3126-S Chr1 37111001 37139000 0 0 Deletion 27999 LOC_Os01g63950 expressed protein FN3126-S Chr1 37111001 37139000 0 0 Deletion 27999 LOC_Os01g63960 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr1 37111001 37139000 0 0 Deletion 27999 LOC_Os01g63970 sialyltransferase family domain containing protein, expressed FN3126-S Chr1 38055001 38072000 0 0 Deletion 16999 LOC_Os01g65580 mitotic checkpoint family protein, putative, expressed FN3126-S Chr1 38055001 38072000 0 0 Deletion 16999 LOC_Os01g66640 S-domain receptor-like protein kinase, putative, expressed FN3126-S Chr1 40341001 40367000 0 0 Deletion 25999 LOC_Os01g69850 OsMADS65 - MADS-box family gene with MIKC* type-box, expressed FN3126-S Chr1 41062001 41074000 0 0 Deletion 11999 LOC_Os01g70940 potassium transporter, putative, expressed FN3126-S Chr1 41062001 41074000 0 0 Deletion 11999 LOC_Os01g70950 spermatogenesis-associated protein 20 precursor, putative, expressed FN3126-S Chr1 41062001 41074000 0 0 Deletion 11999 LOC_Os01g71100 expressed protein FN3126-S Chr1 41979001 41996000 0 0 Deletion 16999 LOC_Os01g72390 NBS type disease resistance protein, putative, expressed FN3126-S Chr1 41979001 41996000 0 0 Deletion 16999 LOC_Os01g72400 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr1 41979001 41996000 0 0 Deletion 16999 LOC_Os01g72570 expressed protein FN3126-S Chr1 42088001 42109000 0 0 Deletion 20999 LOC_Os01g72570 expressed protein FN3126-S Chr1 42208001 42226000 0 0 Deletion 17999 LOC_Os01g72760 cytochrome P450, putative, expressed FN3126-S Chr1 42208001 42226000 0 0 Deletion 17999 LOC_Os01g72780 expressed protein FN3126-S Chr1 42265001 42278000 0 0 Deletion 12999 LOC_Os01g72880 DNA mismatch repair protein Mlh1, putative, expressed FN3126-S Chr1 42265001 42278000 0 0 Deletion 12999 LOC_Os01g72890 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr1 42265001 42278000 0 0 Deletion 12999 LOC_Os02g02490 phytosulfokine receptor precursor, putative, expressed FN3126-S Chr1 5728001 5761000 0 0 Deletion 32999 LOC_Os01g10710 receptor-like protein kinase, putative, expressed FN3126-S Chr1 5728001 5761000 0 0 Deletion 32999 LOC_Os01g10720 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 5728001 5761000 0 0 Deletion 32999 LOC_Os01g10740 expressed protein FN3126-S Chr1 5728001 5761000 0 0 Deletion 32999 LOC_Os01g10750 expressed protein FN3126-S Chr1 5728001 5761000 0 0 Deletion 32999 LOC_Os01g10760 expressed protein FN3126-S Chr1 5728001 5761000 0 0 Deletion 32999 LOC_Os01g10770 expressed protein FN3126-S Chr1 5728001 5761000 0 0 Deletion 32999 LOC_Os01g10780 expressed protein FN3126-S Chr1 5728001 5761000 0 0 Deletion 32999 LOC_Os01g10790 WD domain, G-beta repeat domain containing protein, expressed FN3126-S Chr1 5728001 5761000 0 0 Deletion 32999 LOC_Os01g11710 GDSL-like lipase/acylhydrolase, putative, expressed FN3126-S Chr1 6321001 6339000 0 0 Deletion 17999 LOC_Os01g11720 transposable element protein, putative, containing Pfam profile: PF03004, Transposase_24, expressed FN3126-S Chr1 6321001 6339000 0 0 Deletion 17999 LOC_Os01g12550 expressed protein FN3126-S Chr1 6909001 6935000 0 0 Deletion 25999 LOC_Os01g12560 3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed FN3126-S Chr1 6909001 6935000 0 0 Deletion 25999 LOC_Os01g12570 3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed FN3126-S Chr1 6909001 6935000 0 0 Deletion 25999 LOC_Os01g12580 late embryogenesis abundant protein, putative, expressed FN3126-S Chr1 6909001 6935000 0 0 Deletion 25999 LOC_Os01g12590 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 6909001 6935000 0 0 Deletion 25999 LOC_Os01g12600 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr1 6909001 6935000 0 0 Deletion 25999 LOC_Os01g12750 cytochrome P450, putative, expressed FN3126-S Chr1 7116001 7143000 0 0 Deletion 26999 LOC_Os01g12870 eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed FN3126-S Chr1 7116001 7143000 0 0 Deletion 26999 LOC_Os01g12880 VHS and GAT domain containing protein, expressed FN3126-S Chr1 8168001 8185000 0 0 Deletion 16999 LOC_Os01g14580 dehydrogenase, putative, expressed FN3126-S Chr1 8168001 8185000 0 0 Deletion 16999 LOC_Os01g14590 pathogen-related protein, putative, expressed FN3126-S Chr1 8168001 8185000 0 0 Deletion 16999 LOC_Os01g14610 PSF2 - Putative GINS complex subunit, expressed FN3126-S Chr1 8168001 8185000 0 0 Deletion 16999 LOC_Os01g15180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr1 8508001 8520000 0 0 Deletion 11999 LOC_Os01g15180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr1 8508001 8520000 0 0 Deletion 11999 LOC_Os01g15190 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 10865784 10865785 0 0 Deletion 1 upstream_gene_variant HET FN3126-S Chr10 11069001 11099000 0 0 Deletion 29999 LOC_Os10g21630 hypothetical protein FN3126-S Chr10 11069001 11099000 0 0 Deletion 29999 LOC_Os10g21640 expressed protein FN3126-S Chr10 11069001 11099000 0 0 Deletion 29999 LOC_Os10g21660 FAD binding protein, putative, expressed FN3126-S Chr10 11069001 11099000 0 0 Deletion 29999 LOC_Os10g21700 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr10 11131001 11178000 0 0 Deletion 46999 LOC_Os10g21730 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr10 11131001 11178000 0 0 Deletion 46999 LOC_Os10g21740 expressed protein FN3126-S Chr10 11131001 11178000 0 0 Deletion 46999 LOC_Os10g21760 retrotransposon protein, putative, unclassified FN3126-S Chr10 11131001 11178000 0 0 Deletion 46999 LOC_Os10g21770 expressed protein FN3126-S Chr10 11131001 11178000 0 0 Deletion 46999 LOC_Os10g21780 hypothetical protein FN3126-S Chr10 11131001 11178000 0 0 Deletion 46999 LOC_Os10g21784 expressed protein FN3126-S Chr10 11131001 11178000 0 0 Deletion 46999 LOC_Os10g21910 acetyl-CoA carboxylase, putative, expressed FN3126-S Chr10 11285001 11302000 0 0 Deletion 16999 LOC_Os10g21930 OsFBK21 - F-box domain and kelch repeat containing protein, expressed FN3126-S Chr10 11285001 11302000 0 0 Deletion 16999 LOC_Os10g21970 expressed protein FN3126-S Chr10 11341001 11355000 0 0 Deletion 13999 LOC_Os10g21980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr10 11341001 11355000 0 0 Deletion 13999 LOC_Os10g22540 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 11850001 11867000 0 0 Deletion 16999 LOC_Os10g22810 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 11850001 11867000 0 0 Deletion 16999 LOC_Os10g22820 expressed protein FN3126-S Chr10 11850001 11867000 0 0 Deletion 16999 LOC_Os10g22830 expressed protein FN3126-S Chr10 12048001 12070000 0 0 Deletion 21999 LOC_Os10g23100 ras-related protein, putative, expressed FN3126-S Chr10 12048001 12070000 0 0 Deletion 21999 LOC_Os10g23110 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 12048001 12070000 0 0 Deletion 21999 LOC_Os10g23120 pyridoxamine 5'-phosphate oxidase family protein, putative, expressed FN3126-S Chr10 12133001 12170000 0 0 Deletion 36999 LOC_Os10g23260 hypothetical protein FN3126-S Chr10 12133001 12170000 0 0 Deletion 36999 LOC_Os10g23270 transposon protein, putative, unclassified FN3126-S Chr10 12133001 12170000 0 0 Deletion 36999 LOC_Os10g23280 expressed protein FN3126-S Chr10 12133001 12170000 0 0 Deletion 36999 LOC_Os10g23290 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr10 12133001 12170000 0 0 Deletion 36999 LOC_Os10g24690 expressed protein FN3126-S Chr10 12685001 12709000 0 0 Deletion 23999 LOC_Os10g24690 expressed protein FN3126-S Chr10 12685001 12709000 0 0 Deletion 23999 LOC_Os10g24700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 12685001 12709000 0 0 Deletion 23999 LOC_Os10g24710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 12906001 12919000 0 0 Deletion 12999 LOC_Os10g25200 expressed protein FN3126-S Chr10 13010001 13019000 0 0 Deletion 8999 LOC_Os10g25210 OsFBX384 - F-box domain containing protein, expressed FN3126-S Chr10 13010001 13019000 0 0 Deletion 8999 LOC_Os10g25220 SAP domain containing protein, expressed FN3126-S Chr10 13010001 13019000 0 0 Deletion 8999 LOC_Os10g25560 XI-I, putative, expressed FN3126-S Chr10 13235001 13252000 0 0 Deletion 16999 LOC_Os10g25565 myosin-Va, putative, expressed FN3126-S Chr10 13235001 13252000 0 0 Deletion 16999 LOC_Os10g26420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr10 1361274 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3126-S Chr10 13730001 13754000 0 0 Deletion 23999 LOC_Os10g28420 IQ calmodulin-binding motif family protein, putative, expressed FN3126-S Chr10 14782001 14797000 0 0 Deletion 14999 LOC_Os10g28430 retrotransposon protein, putative, unclassified FN3126-S Chr10 14782001 14797000 0 0 Deletion 14999 LOC_Os10g29830 expressed protein FN3126-S Chr10 16558001 16574000 0 0 Deletion 15999 LOC_Os10g31610 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 16558001 16574000 0 0 Deletion 15999 LOC_Os10g31620 glycine-rich cell wall structural protein 2 precursor, putative, expressed FN3126-S Chr10 16558001 16574000 0 0 Deletion 15999 LOC_Os10g31970 SNF2 family N-terminal domain containing protein, expressed FN3126-S Chr10 16611976 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3126-S Chr10 16788001 16802000 0 0 Deletion 13999 LOC_Os10g31980 retrotransposon protein, putative, LINE subclass, expressed FN3126-S Chr10 16788001 16802000 0 0 Deletion 13999 LOC_Os10g32300 tetratricopeptide repeat domain containing protein, expressed FN3126-S Chr10 17414001 17456000 0 0 Deletion 41999 LOC_Os10g33220 transposon protein, putative, unclassified, expressed FN3126-S Chr10 17414001 17456000 0 0 Deletion 41999 LOC_Os10g33230 RNA recognition motif containing protein, putative, expressed FN3126-S Chr10 17414001 17456000 0 0 Deletion 41999 LOC_Os10g33240 expressed protein FN3126-S Chr10 17414001 17456000 0 0 Deletion 41999 LOC_Os10g33250 WAX2, putative, expressed FN3126-S Chr10 17864001 17877000 0 0 Deletion 12999 LOC_Os10g33774 leucoanthocyanidin reductase, putative, expressed FN3126-S Chr10 17864001 17877000 0 0 Deletion 12999 LOC_Os10g34614 csAtPR5, putative, expressed FN3126-S Chr10 18453001 18509000 0 0 Deletion 55999 LOC_Os10g34630 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 18453001 18509000 0 0 Deletion 55999 LOC_Os10g34640 retrotransposon protein, putative, unclassified FN3126-S Chr10 18453001 18509000 0 0 Deletion 55999 LOC_Os10g34650 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 18453001 18509000 0 0 Deletion 55999 LOC_Os10g34660 expressed protein FN3126-S Chr10 18453001 18509000 0 0 Deletion 55999 LOC_Os10g34670 prefoldin, putative, expressed FN3126-S Chr10 18453001 18509000 0 0 Deletion 55999 LOC_Os10g34680 vacuolar protein sorting-associated protein 52, putative, expressed FN3126-S Chr10 18453001 18509000 0 0 Deletion 55999 LOC_Os10g34694 hypothetical protein FN3126-S Chr10 18453001 18509000 0 0 Deletion 55999 LOC_Os10g34700 expressed protein FN3126-S Chr10 20298001 20335000 0 0 Deletion 36999 LOC_Os10g37920 MATE efflux family protein, putative, expressed FN3126-S Chr10 20298001 20335000 0 0 Deletion 36999 LOC_Os10g37940 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 20298001 20335000 0 0 Deletion 36999 LOC_Os10g37950 conserved hypothetical protein FN3126-S Chr10 20298001 20335000 0 0 Deletion 36999 LOC_Os10g37960 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 21139001 21159000 0 0 Deletion 19999 LOC_Os10g39570 expressed protein FN3126-S Chr10 21139001 21159000 0 0 Deletion 19999 LOC_Os10g40400 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 21648001 21666000 0 0 Deletion 17999 LOC_Os10g40410 expressed protein FN3126-S Chr10 21648001 21666000 0 0 Deletion 17999 LOC_Os10g40420 LTPL138 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3126-S Chr10 21648001 21666000 0 0 Deletion 17999 LOC_Os10g40430 LTPL139 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3126-S Chr10 21648001 21666000 0 0 Deletion 17999 LOC_Os10g40440 LTPL140 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3126-S Chr10 21648001 21666000 0 0 Deletion 17999 LOC_Os10g40450 expressed protein FN3126-S Chr10 21648001 21666000 0 0 Deletion 17999 LOC_Os11g02950 auxin efflux carrier component, putative, expressed FN3126-S Chr10 2230001 2273000 0 0 Deletion 42999 LOC_Os10g04674 disease resistance protein RPM1, putative, expressed FN3126-S Chr10 2230001 2273000 0 0 Deletion 42999 LOC_Os10g04690 expressed protein FN3126-S Chr10 2230001 2273000 0 0 Deletion 42999 LOC_Os10g04700 OsFBX361 - F-box domain containing protein, expressed FN3126-S Chr10 2230001 2273000 0 0 Deletion 42999 LOC_Os10g04710 expressed protein FN3126-S Chr10 2230001 2273000 0 0 Deletion 42999 LOC_Os10g04720 TKL_IRAK_DUF26-la.5 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3126-S Chr10 2230001 2273000 0 0 Deletion 42999 LOC_Os10g04730 TKL_IRAK_DUF26-la.6 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3126-S Chr10 2230001 2273000 0 0 Deletion 42999 LOC_Os10g04740 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 2296001 2308000 0 0 Deletion 11999 LOC_Os10g05560 expressed protein FN3126-S Chr10 3051001 3098000 0 0 Deletion 46999 LOC_Os10g06030 OsWAK103 - OsWAK receptor-like protein kinase, expressed FN3126-S Chr10 3051001 3098000 0 0 Deletion 46999 LOC_Os10g06050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 3051001 3098000 0 0 Deletion 46999 LOC_Os10g06070 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 3051001 3098000 0 0 Deletion 46999 LOC_Os10g06080 hypothetical protein FN3126-S Chr10 3051001 3098000 0 0 Deletion 46999 LOC_Os10g06090 OsWAK104 - OsWAK receptor-like protein kinase, expressed FN3126-S Chr10 3267001 3308000 0 0 Deletion 40999 LOC_Os10g06350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 3267001 3308000 0 0 Deletion 40999 LOC_Os10g06360 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr10 3267001 3308000 0 0 Deletion 40999 LOC_Os10g06370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 3267001 3308000 0 0 Deletion 40999 LOC_Os10g06380 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 3267001 3308000 0 0 Deletion 40999 LOC_Os10g06390 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr10 3267001 3308000 0 0 Deletion 40999 LOC_Os10g06400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 3267001 3308000 0 0 Deletion 40999 LOC_Os10g06410 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 3267001 3308000 0 0 Deletion 40999 LOC_Os10g06420 retrotransposon protein, putative, unclassified FN3126-S Chr10 3267001 3308000 0 0 Deletion 40999 LOC_Os10g06430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 3267001 3308000 0 0 Deletion 40999 LOC_Os10g06990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr10 3638001 3666000 0 0 Deletion 27999 LOC_Os10g07000 hypothetical protein FN3126-S Chr10 3638001 3666000 0 0 Deletion 27999 LOC_Os10g07004 expressed protein FN3126-S Chr10 3638001 3666000 0 0 Deletion 27999 LOC_Os10g07010 3-ketoacyl-CoA synthase, putative, expressed FN3126-S Chr10 3682001 3720000 0 0 Deletion 37999 LOC_Os10g07040 chalcone synthase, putative, expressed FN3126-S Chr10 3682001 3720000 0 0 Deletion 37999 LOC_Os10g07050 expressed protein FN3126-S Chr10 3682001 3720000 0 0 Deletion 37999 LOC_Os10g07060 B3 DNA binding domain containing protein, expressed FN3126-S Chr10 3682001 3720000 0 0 Deletion 37999 LOC_Os10g07248 transposon protein, putative, unclassified, expressed FN3126-S Chr10 3826001 3836000 0 0 Deletion 9999 LOC_Os10g08002 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr10 4297001 4439000 0 0 Deletion 141999 LOC_Os10g08006 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr10 4297001 4439000 0 0 Deletion 141999 LOC_Os10g08010 expressed protein FN3126-S Chr10 4297001 4439000 0 0 Deletion 141999 LOC_Os10g08011 expressed protein FN3126-S Chr10 4297001 4439000 0 0 Deletion 141999 LOC_Os10g08014 white-brown complex homolog protein 11, putative, expressed FN3126-S Chr10 4297001 4439000 0 0 Deletion 141999 LOC_Os10g08018 expressed protein FN3126-S Chr10 4297001 4439000 0 0 Deletion 141999 LOC_Os10g08022 fructose-bisphospate aldolase isozyme, putative, expressed FN3126-S Chr10 4297001 4439000 0 0 Deletion 141999 LOC_Os10g08026 lecithin:cholesterol acyltransferase, putative, expressed FN3126-S Chr10 4297001 4439000 0 0 Deletion 141999 LOC_Os10g08030 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr10 4297001 4439000 0 0 Deletion 141999 LOC_Os10g08040 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 4297001 4439000 0 0 Deletion 141999 LOC_Os10g08050 lecithine cholesterol acyltransferase, putative, expressed FN3126-S Chr10 4297001 4439000 0 0 Deletion 141999 LOC_Os10g08060 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr10 4297001 4439000 0 0 Deletion 141999 LOC_Os10g08070 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 4297001 4439000 0 0 Deletion 141999 LOC_Os10g08080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 4297001 4439000 0 0 Deletion 141999 LOC_Os10g08090 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr10 4297001 4439000 0 0 Deletion 141999 LOC_Os10g08100 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 4297001 4439000 0 0 Deletion 141999 LOC_Os10g08110 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr10 4297001 4439000 0 0 Deletion 141999 LOC_Os10g08120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 4297001 4439000 0 0 Deletion 141999 LOC_Os10g08130 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 4297001 4439000 0 0 Deletion 141999 LOC_Os10g08140 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr10 4297001 4439000 0 0 Deletion 141999 LOC_Os10g08150 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr10 4297001 4439000 0 0 Deletion 141999 LOC_Os10g08160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr10 4297001 4439000 0 0 Deletion 141999 LOC_Os10g08170 expressed protein FN3126-S Chr10 4297001 4439000 0 0 Deletion 141999 LOC_Os10g08180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 4297001 4439000 0 0 Deletion 141999 LOC_Os10g08190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr10 4297001 4439000 0 0 Deletion 141999 LOC_Os10g08200 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr10 4297001 4439000 0 0 Deletion 141999 LOC_Os10g08210 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr10 4297001 4439000 0 0 Deletion 141999 LOC_Os10g08250 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr10 4456001 4485000 0 0 Deletion 28999 LOC_Os10g08260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr10 4456001 4485000 0 0 Deletion 28999 LOC_Os10g08280 DNA binding protein, putative, expressed FN3126-S Chr10 4456001 4485000 0 0 Deletion 28999 LOC_Os10g08290 expressed protein FN3126-S Chr10 4456001 4485000 0 0 Deletion 28999 LOC_Os10g08300 retrotransposon protein, putative, unclassified FN3126-S Chr10 4456001 4485000 0 0 Deletion 28999 LOC_Os10g08370 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr10 4536001 4546000 0 0 Deletion 9999 LOC_Os10g08440 expressed protein FN3126-S Chr10 4583001 4604000 0 0 Deletion 20999 LOC_Os10g08450 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr10 4583001 4604000 0 0 Deletion 20999 LOC_Os10g08460 expressed protein FN3126-S Chr10 4583001 4604000 0 0 Deletion 20999 LOC_Os10g08474 cytochrome P450, putative, expressed FN3126-S Chr10 4583001 4604000 0 0 Deletion 20999 LOC_Os10g08610 expressed protein FN3126-S Chr10 4685001 4738000 0 0 Deletion 52999 LOC_Os10g08640 expressed protein FN3126-S Chr10 4685001 4738000 0 0 Deletion 52999 LOC_Os10g08650 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr10 4685001 4738000 0 0 Deletion 52999 LOC_Os10g08660 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr10 4685001 4738000 0 0 Deletion 52999 LOC_Os10g08670 chalcone synthase, putative, expressed FN3126-S Chr10 4685001 4738000 0 0 Deletion 52999 LOC_Os10g08680 conserved hypothetical protein FN3126-S Chr10 4685001 4738000 0 0 Deletion 52999 LOC_Os10g08690 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 4685001 4738000 0 0 Deletion 52999 LOC_Os10g08696 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr10 4685001 4738000 0 0 Deletion 52999 LOC_Os10g08702 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 4685001 4738000 0 0 Deletion 52999 LOC_Os10g08710 chalcone synthase, putative, expressed FN3126-S Chr10 4685001 4738000 0 0 Deletion 52999 LOC_Os10g08720 hypothetical protein FN3126-S Chr10 4685001 4738000 0 0 Deletion 52999 LOC_Os10g08730 expressed protein FN3126-S Chr10 4920001 4933000 0 0 Deletion 12999 LOC_Os10g09110 cytochrome P450, putative, expressed FN3126-S Chr10 4920001 4933000 0 0 Deletion 12999 LOC_Os10g09860 chalcone synthase, putative, expressed FN3126-S Chr10 519001 554000 0 0 Deletion 34999 LOC_Os10g01800 transferase family protein, putative, expressed FN3126-S Chr10 519001 554000 0 0 Deletion 34999 LOC_Os10g01810 hypothetical protein FN3126-S Chr10 519001 554000 0 0 Deletion 34999 LOC_Os10g01820 expressed protein FN3126-S Chr10 519001 554000 0 0 Deletion 34999 LOC_Os10g01830 expressed protein FN3126-S Chr10 519001 554000 0 0 Deletion 34999 LOC_Os10g01840 hypothetical protein FN3126-S Chr10 519001 554000 0 0 Deletion 34999 LOC_Os10g01844 expressed protein FN3126-S Chr10 519001 554000 0 0 Deletion 34999 LOC_Os10g01850 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 5331001 5364000 0 0 Deletion 32999 LOC_Os10g09870 HVA22, putative, expressed FN3126-S Chr10 5331001 5364000 0 0 Deletion 32999 LOC_Os10g09880 retrotransposon protein, putative, unclassified FN3126-S Chr10 5331001 5364000 0 0 Deletion 32999 LOC_Os10g09890 hypothetical protein FN3126-S Chr10 5331001 5364000 0 0 Deletion 32999 LOC_Os10g09900 transposon protein, putative, unclassified, expressed FN3126-S Chr10 5331001 5364000 0 0 Deletion 32999 LOC_Os10g10030 OsWAK111 - OsWAK receptor-like protein kinase, expressed FN3126-S Chr10 5528001 5546000 0 0 Deletion 17999 LOC_Os10g10280 expressed protein FN3126-S Chr10 5647001 5660000 0 0 Deletion 12999 LOC_Os10g10290 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 5647001 5660000 0 0 Deletion 12999 LOC_Os10g10300 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 5647001 5660000 0 0 Deletion 12999 LOC_Os10g10410 OsFBX377 - F-box domain containing protein, expressed FN3126-S Chr10 590001 640000 0 0 Deletion 49999 LOC_Os10g01940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 590001 640000 0 0 Deletion 49999 LOC_Os10g01950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 590001 640000 0 0 Deletion 49999 LOC_Os10g01960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 590001 640000 0 0 Deletion 49999 LOC_Os10g01970 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 590001 640000 0 0 Deletion 49999 LOC_Os10g01984 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr10 590001 640000 0 0 Deletion 49999 LOC_Os10g02000 transferase family protein, putative, expressed FN3126-S Chr10 590001 640000 0 0 Deletion 49999 LOC_Os10g02010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr10 590001 640000 0 0 Deletion 49999 LOC_Os10g02120 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 5985001 6010000 0 0 Deletion 24999 LOC_Os10g10820 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 5985001 6010000 0 0 Deletion 24999 LOC_Os10g10830 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 5985001 6010000 0 0 Deletion 24999 LOC_Os10g10840 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 5985001 6010000 0 0 Deletion 24999 LOC_Os10g11012 expressed protein FN3126-S Chr10 6089001 6109000 0 0 Deletion 19999 LOC_Os10g11012 expressed protein FN3126-S Chr10 6089001 6109000 0 0 Deletion 19999 LOC_Os10g11022 expressed protein FN3126-S Chr10 6089001 6109000 0 0 Deletion 19999 LOC_Os10g11034 caffeine-induced death protein 1, putative, expressed FN3126-S Chr10 6183001 6220000 0 0 Deletion 36999 LOC_Os10g11170 expressed protein FN3126-S Chr10 6183001 6220000 0 0 Deletion 36999 LOC_Os10g11180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 6183001 6220000 0 0 Deletion 36999 LOC_Os10g11190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 6183001 6220000 0 0 Deletion 36999 LOC_Os10g11200 aminotransferase, classes I and II, domain containing protein, expressed FN3126-S Chr10 6183001 6220000 0 0 Deletion 36999 LOC_Os10g11210 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr10 6600001 6620000 0 0 Deletion 19999 LOC_Os10g11920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 6600001 6620000 0 0 Deletion 19999 LOC_Os10g11930 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 6600001 6620000 0 0 Deletion 19999 LOC_Os10g12140 transposon protein, putative, unclassified, expressed FN3126-S Chr10 6754001 6764000 0 0 Deletion 9999 LOC_Os10g12149 retrotransposon protein, putative, unclassified FN3126-S Chr10 6754001 6764000 0 0 Deletion 9999 LOC_Os10g12160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 6754001 6764000 0 0 Deletion 9999 LOC_Os10g12410 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr10 6907001 6921000 0 0 Deletion 13999 LOC_Os10g12520 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr10 6954001 7021000 0 0 Deletion 66999 LOC_Os10g12530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 6954001 7021000 0 0 Deletion 66999 LOC_Os10g12539 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr10 6954001 7021000 0 0 Deletion 66999 LOC_Os10g12548 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr10 6954001 7021000 0 0 Deletion 66999 LOC_Os10g12560 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr10 6954001 7021000 0 0 Deletion 66999 LOC_Os10g12570 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr10 6954001 7021000 0 0 Deletion 66999 LOC_Os10g12580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 6954001 7021000 0 0 Deletion 66999 LOC_Os10g12590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 6954001 7021000 0 0 Deletion 66999 LOC_Os10g12610 expressed protein FN3126-S Chr10 6954001 7021000 0 0 Deletion 66999 LOC_Os10g13370 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 7220001 7268000 0 0 Deletion 47999 LOC_Os10g13380 expressed protein FN3126-S Chr10 7220001 7268000 0 0 Deletion 47999 LOC_Os10g13390 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 7220001 7268000 0 0 Deletion 47999 LOC_Os10g13400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 7220001 7268000 0 0 Deletion 47999 LOC_Os10g13410 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 7220001 7268000 0 0 Deletion 47999 LOC_Os10g13420 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 7220001 7268000 0 0 Deletion 47999 LOC_Os10g13430 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr10 7220001 7268000 0 0 Deletion 47999 LOC_Os10g13470 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 7272001 7330000 0 0 Deletion 57999 LOC_Os10g13480 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr10 7272001 7330000 0 0 Deletion 57999 LOC_Os10g13490 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 7272001 7330000 0 0 Deletion 57999 LOC_Os10g13500 expressed protein FN3126-S Chr10 7272001 7330000 0 0 Deletion 57999 LOC_Os10g13505 expressed protein FN3126-S Chr10 7272001 7330000 0 0 Deletion 57999 LOC_Os10g13510 transposable element protein, putative, containing Pfam profile: PF03108, MuDR, expressed FN3126-S Chr10 7272001 7330000 0 0 Deletion 57999 LOC_Os10g13530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 7272001 7330000 0 0 Deletion 57999 LOC_Os10g15170 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 757001 766000 0 0 Deletion 8999 LOC_Os10g02509 GAGA-binding protein, putative, expressed FN3126-S Chr10 8069001 8088000 0 0 Deletion 18999 LOC_Os10g15160 conserved hypothetical protein FN3126-S Chr10 8069001 8088000 0 0 Deletion 18999 LOC_Os10g15164 expressed protein FN3126-S Chr10 8069001 8088000 0 0 Deletion 18999 LOC_Os10g16880 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 9050001 9078000 0 0 Deletion 27999 LOC_Os10g17910 OsWAK114 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed FN3126-S Chr10 9050001 9078000 0 0 Deletion 27999 LOC_Os10g17920 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 9050001 9078000 0 0 Deletion 27999 LOC_Os10g17930 OsFBX381 - F-box domain containing protein, expressed FN3126-S Chr10 9083001 9110000 0 0 Deletion 26999 LOC_Os10g17960 TKL_IRAK_DUF26-lc.26 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3126-S Chr10 9083001 9110000 0 0 Deletion 26999 LOC_Os10g17970 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr10 9083001 9110000 0 0 Deletion 26999 LOC_Os10g21620 expressed protein FN3126-S Chr10 939001 1049000 0 0 Deletion 109999 LOC_Os10g02520 transposon protein, putative, unclassified, expressed FN3126-S Chr10 939001 1049000 0 0 Deletion 109999 LOC_Os10g02530 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr10 939001 1049000 0 0 Deletion 109999 LOC_Os10g02544 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 939001 1049000 0 0 Deletion 109999 LOC_Os10g02560 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr10 939001 1049000 0 0 Deletion 109999 LOC_Os10g02570 retrotransposon protein, putative, unclassified FN3126-S Chr10 939001 1049000 0 0 Deletion 109999 LOC_Os10g02584 GAGA-binding protein, putative, expressed FN3126-S Chr10 939001 1049000 0 0 Deletion 109999 LOC_Os10g02600 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr10 939001 1049000 0 0 Deletion 109999 LOC_Os10g02610 expressed protein FN3126-S Chr10 939001 1049000 0 0 Deletion 109999 LOC_Os10g02620 GAGA-binding protein, putative, expressed FN3126-S Chr10 939001 1049000 0 0 Deletion 109999 LOC_Os10g02625 gibberellin regulated protein, putative, expressed FN3126-S Chr10 939001 1049000 0 0 Deletion 109999 LOC_Os10g02630 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr10 939001 1049000 0 0 Deletion 109999 LOC_Os10g02640 expressed protein FN3126-S Chr10 939001 1049000 0 0 Deletion 109999 LOC_Os10g02644 hypothetical protein FN3126-S Chr10 939001 1049000 0 0 Deletion 109999 LOC_Os10g02650 PPR repeat containing protein, expressed FN3126-S Chr10 939001 1049000 0 0 Deletion 109999 LOC_Os10g02660 transposon protein, putative, unclassified, expressed FN3126-S Chr10 939001 1049000 0 0 Deletion 109999 LOC_Os10g02670 expressed protein FN3126-S Chr11 10149001 10167000 0 0 Deletion 17999 LOC_Os11g18080 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 10149001 10167000 0 0 Deletion 17999 LOC_Os11g18194 cycloartenol synthase, putative, expressed FN3126-S Chr11 1021001 1044000 0 0 Deletion 22999 LOC_Os11g02950 auxin efflux carrier component, putative, expressed FN3126-S Chr11 1021001 1044000 0 0 Deletion 22999 LOC_Os11g02964 FAR1 family protein, expressed FN3126-S Chr11 1021001 1044000 0 0 Deletion 22999 LOC_Os11g02980 expressed protein FN3126-S Chr11 1021001 1044000 0 0 Deletion 22999 LOC_Os11g02990 conserved hypothetical protein FN3126-S Chr11 1021001 1044000 0 0 Deletion 22999 LOC_Os11g03000 retrotransposon protein, putative, unclassified FN3126-S Chr11 10257944 10566733 0 0 Inversion 308789 FN3126-S Chr11 10257959 10658723 0 0 Inversion 400764 LOC_Os11g18780 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 10294001 10346000 0 0 Deletion 51999 LOC_Os11g18280 retrotransposon protein, putative, unclassified FN3126-S Chr11 10294001 10346000 0 0 Deletion 51999 LOC_Os11g18290 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 10294001 10346000 0 0 Deletion 51999 LOC_Os11g18300 expressed protein FN3126-S Chr11 10294001 10346000 0 0 Deletion 51999 LOC_Os11g18310 cycloartenol synthase, putative FN3126-S Chr11 10294001 10346000 0 0 Deletion 51999 LOC_Os11g18320 expressed protein FN3126-S Chr11 10294001 10346000 0 0 Deletion 51999 LOC_Os11g18340 cycloartenol synthase, putative, expressed FN3126-S Chr11 10546001 10693000 0 0 Deletion 146999 LOC_Os11g18680 hypothetical protein FN3126-S Chr11 10546001 10693000 0 0 Deletion 146999 LOC_Os11g18690 glycosyl hydrolase family 3 protein, putative, expressed FN3126-S Chr11 10546001 10693000 0 0 Deletion 146999 LOC_Os11g18700 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 10546001 10693000 0 0 Deletion 146999 LOC_Os11g18710 expressed protein FN3126-S Chr11 10546001 10693000 0 0 Deletion 146999 LOC_Os11g18720 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 10546001 10693000 0 0 Deletion 146999 LOC_Os11g18730 glycosyl hydrolase family 3 protein, putative, expressed FN3126-S Chr11 10546001 10693000 0 0 Deletion 146999 LOC_Os11g18740 hypothetical protein FN3126-S Chr11 10546001 10693000 0 0 Deletion 146999 LOC_Os11g18750 expressed protein FN3126-S Chr11 10546001 10693000 0 0 Deletion 146999 LOC_Os11g18760 expressed protein FN3126-S Chr11 10546001 10693000 0 0 Deletion 146999 LOC_Os11g18770 PHD-finger family protein, expressed FN3126-S Chr11 10546001 10693000 0 0 Deletion 146999 LOC_Os11g18780 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 10546001 10693000 0 0 Deletion 146999 LOC_Os11g18790 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 10546001 10693000 0 0 Deletion 146999 LOC_Os11g18800 retrotransposon protein, putative, unclassified FN3126-S Chr11 10546001 10693000 0 0 Deletion 146999 LOC_Os11g18810 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 10546001 10693000 0 0 Deletion 146999 LOC_Os11g18820 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 10546001 10693000 0 0 Deletion 146999 LOC_Os11g18830 survival motor neuron containing protein, expressed FN3126-S Chr11 10839001 10857000 0 0 Deletion 17999 LOC_Os11g19020 expressed protein FN3126-S Chr11 10839001 10857000 0 0 Deletion 17999 LOC_Os11g19030 FAR1 family protein, expressed FN3126-S Chr11 10839001 10857000 0 0 Deletion 17999 LOC_Os11g19040 hypothetical protein FN3126-S Chr11 10839001 10857000 0 0 Deletion 17999 LOC_Os11g19310 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr11 11305001 11330000 0 0 Deletion 24999 LOC_Os11g19620 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 11305001 11330000 0 0 Deletion 24999 LOC_Os11g19630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 11305001 11330000 0 0 Deletion 24999 LOC_Os11g19640 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr11 11305001 11330000 0 0 Deletion 24999 LOC_Os11g19650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 11305001 11330000 0 0 Deletion 24999 LOC_Os11g19660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 11305001 11330000 0 0 Deletion 24999 LOC_Os11g19670 retrotransposon protein, putative, unclassified FN3126-S Chr11 11419001 11434000 0 0 Deletion 14999 LOC_Os11g19830 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 11419001 11434000 0 0 Deletion 14999 LOC_Os11g19840 O-methyltransferase, putative, expressed FN3126-S Chr11 11478001 11538000 0 0 Deletion 59999 LOC_Os11g19960 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 11478001 11538000 0 0 Deletion 59999 LOC_Os11g19970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 11478001 11538000 0 0 Deletion 59999 LOC_Os11g19980 hypothetical protein FN3126-S Chr11 11478001 11538000 0 0 Deletion 59999 LOC_Os11g19990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 11478001 11538000 0 0 Deletion 59999 LOC_Os11g20000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 11478001 11538000 0 0 Deletion 59999 LOC_Os11g20010 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 11478001 11538000 0 0 Deletion 59999 LOC_Os11g20020 expressed protein FN3126-S Chr11 11478001 11538000 0 0 Deletion 59999 LOC_Os11g20030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 11478001 11538000 0 0 Deletion 59999 LOC_Os11g21960 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 12606001 12615000 0 0 Deletion 8999 LOC_Os11g21970 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr11 12606001 12615000 0 0 Deletion 8999 LOC_Os11g22160 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 12756001 12774000 0 0 Deletion 17999 LOC_Os11g22240 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr11 12756001 12774000 0 0 Deletion 17999 LOC_Os11g22250 expressed protein FN3126-S Chr11 12756001 12774000 0 0 Deletion 17999 LOC_Os11g22260 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 12756001 12774000 0 0 Deletion 17999 LOC_Os11g22270 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 12756001 12774000 0 0 Deletion 17999 LOC_Os11g22470 retrotransposon, putative, centromere-specific FN3126-S Chr11 12927001 12963000 0 0 Deletion 35999 LOC_Os11g22500 retrotransposon, putative, centromere-specific, expressed FN3126-S Chr11 12927001 12963000 0 0 Deletion 35999 LOC_Os11g22510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 12927001 12963000 0 0 Deletion 35999 LOC_Os11g22530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 12927001 12963000 0 0 Deletion 35999 LOC_Os11g22540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 12927001 12963000 0 0 Deletion 35999 LOC_Os11g22580 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 12992001 13010000 0 0 Deletion 17999 LOC_Os11g22590 retrotransposon protein, putative, Ty1-copia subclass FN3126-S Chr11 12992001 13010000 0 0 Deletion 17999 LOC_Os11g22600 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr11 12992001 13010000 0 0 Deletion 17999 LOC_Os11g22610 retrotransposon, putative, centromere-specific, expressed FN3126-S Chr11 12992001 13010000 0 0 Deletion 17999 LOC_Os11g22620 retrotransposon protein, putative, LINE subclass, expressed FN3126-S Chr11 12992001 13010000 0 0 Deletion 17999 LOC_Os11g23736 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 13426452 13426453 0 0 Deletion 1 intron_variant HET FN3126-S Chr11 13551570 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3126-S Chr11 13727001 13755000 0 0 Deletion 27999 LOC_Os11g24170 CC-NBS-LRR protein, putative, expressed FN3126-S Chr11 13727001 13755000 0 0 Deletion 27999 LOC_Os11g24230 expressed protein FN3126-S Chr11 13797001 13806000 0 0 Deletion 8999 LOC_Os11g24810 transposon protein, putative, unclassified, expressed FN3126-S Chr11 14137001 14243000 0 0 Deletion 105999 LOC_Os11g24810 transposon protein, putative, unclassified, expressed FN3126-S Chr11 14137001 14243000 0 0 Deletion 105999 LOC_Os11g24824 expressed protein FN3126-S Chr11 14137001 14243000 0 0 Deletion 105999 LOC_Os11g24840 ankyrin repeat family protein, putative, expressed FN3126-S Chr11 14137001 14243000 0 0 Deletion 105999 LOC_Os11g24850 ankyrin repeat domain containing protein, expressed FN3126-S Chr11 14137001 14243000 0 0 Deletion 105999 LOC_Os11g24860 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr11 14137001 14243000 0 0 Deletion 105999 LOC_Os11g24870 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr11 14137001 14243000 0 0 Deletion 105999 LOC_Os11g24880 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr11 14137001 14243000 0 0 Deletion 105999 LOC_Os11g24890 expressed protein FN3126-S Chr11 14137001 14243000 0 0 Deletion 105999 LOC_Os11g24900 expressed protein FN3126-S Chr11 14137001 14243000 0 0 Deletion 105999 LOC_Os11g24910 hypothetical protein FN3126-S Chr11 14137001 14243000 0 0 Deletion 105999 LOC_Os11g24920 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 14137001 14243000 0 0 Deletion 105999 LOC_Os11g24930 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 14137001 14243000 0 0 Deletion 105999 LOC_Os11g24940 expressed protein FN3126-S Chr11 14137001 14243000 0 0 Deletion 105999 LOC_Os11g24950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 14137001 14243000 0 0 Deletion 105999 LOC_Os11g24964 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr11 14137001 14243000 0 0 Deletion 105999 LOC_Os11g24980 hypothetical protein FN3126-S Chr11 14137001 14243000 0 0 Deletion 105999 LOC_Os11g24990 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 14137001 14243000 0 0 Deletion 105999 LOC_Os11g25000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr11 14272001 14308000 0 0 Deletion 35999 LOC_Os11g25060 flavonol synthase/flavanone 3-hydroxylase, putative, expressed FN3126-S Chr11 14272001 14308000 0 0 Deletion 35999 LOC_Os11g25070 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 14272001 14308000 0 0 Deletion 35999 LOC_Os11g25080 expressed protein FN3126-S Chr11 14272001 14308000 0 0 Deletion 35999 LOC_Os11g25090 expressed protein FN3126-S Chr11 14272001 14308000 0 0 Deletion 35999 LOC_Os11g25100 tropinone reductase, putative, expressed FN3126-S Chr11 14635001 14671000 0 0 Deletion 35999 LOC_Os11g25650 retrotransposon protein, putative, unclassified FN3126-S Chr11 14635001 14671000 0 0 Deletion 35999 LOC_Os11g25660 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr11 14635001 14671000 0 0 Deletion 35999 LOC_Os11g25670 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 14635001 14671000 0 0 Deletion 35999 LOC_Os11g25680 retrotransposon protein, putative, unclassified FN3126-S Chr11 14635001 14671000 0 0 Deletion 35999 LOC_Os11g25690 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 14635001 14671000 0 0 Deletion 35999 LOC_Os11g25700 tropinone reductase, putative, expressed FN3126-S Chr11 14635001 14671000 0 0 Deletion 35999 LOC_Os11g25720 cytokinin-N-glucosyltransferase 1, putative, expressed FN3126-S Chr11 15018001 15035000 0 0 Deletion 16999 LOC_Os11g26250 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr11 15018001 15035000 0 0 Deletion 16999 LOC_Os11g26520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 15196001 15210000 0 0 Deletion 13999 LOC_Os11g26530 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr11 15196001 15210000 0 0 Deletion 13999 LOC_Os11g26540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 15196001 15210000 0 0 Deletion 13999 LOC_Os11g27170 OsSCP58 - Putative Serine Carboxypeptidase homologue, expressed FN3126-S Chr11 15641001 15700000 0 0 Deletion 58999 LOC_Os11g27170 OsSCP58 - Putative Serine Carboxypeptidase homologue, expressed FN3126-S Chr11 15641001 15700000 0 0 Deletion 58999 LOC_Os11g27210 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 15641001 15700000 0 0 Deletion 58999 LOC_Os11g27220 hypothetical protein FN3126-S Chr11 15641001 15700000 0 0 Deletion 58999 LOC_Os11g27240 pentatricopeptide repeat domain containing protein, putative, expressed FN3126-S Chr11 15641001 15700000 0 0 Deletion 58999 LOC_Os11g27250 expressed protein FN3126-S Chr11 15641001 15700000 0 0 Deletion 58999 LOC_Os11g27264 OsSCP60 - Putative Serine Carboxypeptidase homologue, expressed FN3126-S Chr11 15641001 15700000 0 0 Deletion 58999 LOC_Os11g27280 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr11 15641001 15700000 0 0 Deletion 58999 LOC_Os11g27290 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr11 15784001 15811000 0 0 Deletion 26999 LOC_Os11g27440 MLA7, putative, expressed FN3126-S Chr11 15784001 15811000 0 0 Deletion 26999 LOC_Os11g27460 retrotransposon protein, putative, unclassified FN3126-S Chr11 15784001 15811000 0 0 Deletion 26999 LOC_Os11g27810 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 16013001 16036000 0 0 Deletion 22999 LOC_Os11g27810 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 16013001 16036000 0 0 Deletion 22999 LOC_Os11g27830 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 16013001 16036000 0 0 Deletion 22999 LOC_Os11g27840 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr11 16013001 16036000 0 0 Deletion 22999 LOC_Os11g27850 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 16013001 16036000 0 0 Deletion 22999 LOC_Os11g27860 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr11 16463001 16518000 0 0 Deletion 54999 LOC_Os11g28560 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 16463001 16518000 0 0 Deletion 54999 LOC_Os11g28570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 16463001 16518000 0 0 Deletion 54999 LOC_Os11g28580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 16463001 16518000 0 0 Deletion 54999 LOC_Os11g28590 retrotransposon protein, putative, Ty1-copia subclass FN3126-S Chr11 16463001 16518000 0 0 Deletion 54999 LOC_Os11g28600 expressed protein FN3126-S Chr11 16463001 16518000 0 0 Deletion 54999 LOC_Os11g28610 transporter family protein, putative, expressed FN3126-S Chr11 16463001 16518000 0 0 Deletion 54999 LOC_Os11g28700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 16748001 16758000 0 0 Deletion 9999 LOC_Os11g29190 40S ribosomal protein S5, putative, expressed FN3126-S Chr11 16921001 16936000 0 0 Deletion 14999 LOC_Os11g29520 NBS-LRR disease resistance protein, putative, expressed FN3126-S Chr11 17128001 17150000 0 0 Deletion 21999 LOC_Os11g29530 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 17128001 17150000 0 0 Deletion 21999 LOC_Os11g29540 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 17128001 17150000 0 0 Deletion 21999 LOC_Os11g29550 retrotransposon protein, putative, unclassified FN3126-S Chr11 17128001 17150000 0 0 Deletion 21999 LOC_Os11g29560 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 17128001 17150000 0 0 Deletion 21999 LOC_Os11g30250 hypothetical protein FN3126-S Chr11 19090001 19112000 0 0 Deletion 21999 LOC_Os11g32320 CCB1, putative, expressed FN3126-S Chr11 19090001 19112000 0 0 Deletion 21999 LOC_Os11g32330 retrotransposon protein, putative, unclassified FN3126-S Chr11 19090001 19112000 0 0 Deletion 21999 LOC_Os11g32340 hypothetical protein FN3126-S Chr11 19090001 19112000 0 0 Deletion 21999 LOC_Os11g32350 expressed protein FN3126-S Chr11 19289001 19303000 0 0 Deletion 13999 LOC_Os11g32670 GRF zinc finger family protein, expressed FN3126-S Chr11 19289001 19303000 0 0 Deletion 13999 LOC_Os11g32680 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr11 19289001 19303000 0 0 Deletion 13999 LOC_Os11g32690 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr11 19289001 19303000 0 0 Deletion 13999 LOC_Os11g33060 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 19300785 Chr4 23930569 0 Translocation 0 FN3126-S Chr11 20404001 20420000 0 0 Deletion 15999 LOC_Os11g34830 ABC1 family domain containing protein, putative, expressed FN3126-S Chr11 20404001 20420000 0 0 Deletion 15999 LOC_Os11g34840 MMP37-like protein, mitochondrial precursor, putative, expressed FN3126-S Chr11 20404001 20420000 0 0 Deletion 15999 LOC_Os11g35650 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr11 20913259 20913261 0 0 Deletion 2 upstream_gene_variant HET FN3126-S Chr11 21008001 21026000 0 0 Deletion 17999 LOC_Os11g35800 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr11 21008001 21026000 0 0 Deletion 17999 LOC_Os11g35810 expressed protein FN3126-S Chr11 21008001 21026000 0 0 Deletion 17999 LOC_Os11g35820 expressed protein FN3126-S Chr11 21008001 21026000 0 0 Deletion 17999 LOC_Os11g35880 transposon protein, putative, unclassified, expressed FN3126-S Chr11 21083001 21111000 0 0 Deletion 27999 LOC_Os11g35910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 21083001 21111000 0 0 Deletion 27999 LOC_Os11g35920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 21083001 21111000 0 0 Deletion 27999 LOC_Os11g35930 chalcone synthase, putative, expressed FN3126-S Chr11 21083001 21111000 0 0 Deletion 27999 LOC_Os11g35940 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr11 21351001 21369000 0 0 Deletion 17999 LOC_Os11g36280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr11 21800001 21846000 0 0 Deletion 45999 LOC_Os11g36970 zinc finger C3HC4 type family protein, putative, expressed FN3126-S Chr11 21800001 21846000 0 0 Deletion 45999 LOC_Os11g36980 expressed protein FN3126-S Chr11 21800001 21846000 0 0 Deletion 45999 LOC_Os11g36990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr11 21800001 21846000 0 0 Deletion 45999 LOC_Os11g37000 heat shock protein DnaJ, putative, expressed FN3126-S Chr11 21800001 21846000 0 0 Deletion 45999 LOC_Os11g39100 expressed protein FN3126-S Chr11 22777172 22777172 0 0 Insertion 2 downstream_gene_variant HET FN3126-S Chr11 2293001 2332000 0 0 Deletion 38999 LOC_Os11g05210 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 2293001 2332000 0 0 Deletion 38999 LOC_Os11g05220 transposon protein, putative, unclassified, expressed FN3126-S Chr11 2293001 2332000 0 0 Deletion 38999 LOC_Os11g05230 zinc finger, C3HC4 type domain containing protein, expressed FN3126-S Chr11 2293001 2332000 0 0 Deletion 38999 LOC_Os11g05240 PAN domain-containing protein At5g03700 precursor, putative, expressed FN3126-S Chr11 2293001 2332000 0 0 Deletion 38999 LOC_Os11g05250 hypothetical protein FN3126-S Chr11 2293001 2332000 0 0 Deletion 38999 LOC_Os11g05260 phosphoglycerate mutase, putative, expressed FN3126-S Chr11 2293001 2332000 0 0 Deletion 38999 LOC_Os11g07120 receptor kinase-like protein, identical, putative, expressed FN3126-S Chr11 23272001 23317000 0 0 Deletion 44999 LOC_Os11g39110 expressed protein FN3126-S Chr11 23272001 23317000 0 0 Deletion 44999 LOC_Os11g39120 expressed protein FN3126-S Chr11 23272001 23317000 0 0 Deletion 44999 LOC_Os11g39130 zinc finger, C3HC4 type family protein, expressed FN3126-S Chr11 23272001 23317000 0 0 Deletion 44999 LOC_Os11g39140 thioredoxin domain-containing protein 9, putative, expressed FN3126-S Chr11 23272001 23317000 0 0 Deletion 44999 LOC_Os11g39150 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 23272001 23317000 0 0 Deletion 44999 LOC_Os11g39160 NBS-LRR disease resistance protein, putative, expressed FN3126-S Chr11 23272001 23317000 0 0 Deletion 44999 LOC_Os11g39170 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 23272001 23317000 0 0 Deletion 44999 LOC_Os11g41160 phosphoserine phosphatase, chloroplast precursor, putative, expressed FN3126-S Chr11 23773095 23773133 0 0 Deletion 38 frameshift_variant HET LOC_Os11g39880 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr11 24623041 Chr8 9667642 0 Translocation 0 FN3126-S Chr11 24662001 24694000 0 0 Deletion 31999 LOC_Os11g41180 expressed protein FN3126-S Chr11 24662001 24694000 0 0 Deletion 31999 LOC_Os11g41190 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 24723001 24771000 0 0 Deletion 47999 LOC_Os11g41230 ATBPM6, putative, expressed FN3126-S Chr11 24723001 24771000 0 0 Deletion 47999 LOC_Os11g41240 ATBPM6, putative FN3126-S Chr11 24723001 24771000 0 0 Deletion 47999 LOC_Os11g41250 expressed protein FN3126-S Chr11 24723001 24771000 0 0 Deletion 47999 LOC_Os11g41260 snRNP protein, putative, expressed FN3126-S Chr11 24723001 24771000 0 0 Deletion 47999 LOC_Os11g41270 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 24723001 24771000 0 0 Deletion 47999 LOC_Os11g41280 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 24723001 24771000 0 0 Deletion 47999 LOC_Os11g41290 MrBTB5 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH-related domain, expressed FN3126-S Chr11 24723001 24771000 0 0 Deletion 47999 LOC_Os11g41300 MBTB65 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3126-S Chr11 24723001 24771000 0 0 Deletion 47999 LOC_Os11g41310 MBTB66 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3126-S Chr11 24914001 24936000 0 0 Deletion 21999 LOC_Os11g41550 expressed protein FN3126-S Chr11 24914001 24936000 0 0 Deletion 21999 LOC_Os11g41560 OsFBX427 - F-box domain containing protein, expressed FN3126-S Chr11 24914001 24936000 0 0 Deletion 21999 LOC_Os11g42140 transposon protein, putative, unclassified, expressed FN3126-S Chr11 25405001 25427000 0 0 Deletion 21999 LOC_Os11g42190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr11 25405001 25427000 0 0 Deletion 21999 LOC_Os11g42200 laccase precursor protein, putative, expressed FN3126-S Chr11 25405001 25427000 0 0 Deletion 21999 LOC_Os11g42210 expressed protein FN3126-S Chr11 25405001 25427000 0 0 Deletion 21999 LOC_Os11g42270 OsFBX432 - F-box domain containing protein, expressed FN3126-S Chr11 25670001 25697000 0 0 Deletion 26999 LOC_Os11g42640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 25670001 25697000 0 0 Deletion 26999 LOC_Os11g42650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 25670001 25697000 0 0 Deletion 26999 LOC_Os11g42660 Leucine Rich Repeat family protein, expressed FN3126-S Chr11 25670001 25697000 0 0 Deletion 26999 LOC_Os11g43220 expressed protein FN3126-S Chr11 26069001 26108000 0 0 Deletion 38999 LOC_Os11g43230 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr11 26069001 26108000 0 0 Deletion 38999 LOC_Os11g43240 expressed protein FN3126-S Chr11 26069001 26108000 0 0 Deletion 38999 LOC_Os11g43250 Leucine Rich Repeat family protein, expressed FN3126-S Chr11 26069001 26108000 0 0 Deletion 38999 LOC_Os11g43260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr11 26069001 26108000 0 0 Deletion 38999 LOC_Os11g43270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 26069001 26108000 0 0 Deletion 38999 LOC_Os11g43760 lipase class 3 family protein, putative, expressed FN3126-S Chr11 26433001 26445000 0 0 Deletion 11999 LOC_Os11g43770 Leucine Rich Repeat family protein, expressed FN3126-S Chr11 26433001 26445000 0 0 Deletion 11999 LOC_Os11g44000 expressed protein FN3126-S Chr11 26619001 26643000 0 0 Deletion 23999 LOC_Os11g44050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 26619001 26643000 0 0 Deletion 23999 LOC_Os11g44060 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr11 26619001 26643000 0 0 Deletion 23999 LOC_Os11g44070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 26619001 26643000 0 0 Deletion 23999 LOC_Os11g44084 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr11 26619001 26643000 0 0 Deletion 23999 LOC_Os11g44100 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr11 26619001 26643000 0 0 Deletion 23999 LOC_Os11g44110 expressed protein FN3126-S Chr11 3550001 3590000 0 0 Deletion 39999 LOC_Os11g07124 EFR, putative, expressed FN3126-S Chr11 3550001 3590000 0 0 Deletion 39999 LOC_Os11g07130 receptor kinase, putative, expressed FN3126-S Chr11 3550001 3590000 0 0 Deletion 39999 LOC_Os11g07140 receptor kinase, putative, expressed FN3126-S Chr11 3550001 3590000 0 0 Deletion 39999 LOC_Os11g07150 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 3550001 3590000 0 0 Deletion 39999 LOC_Os11g07160 receptor protein kinase CLAVATA1 precursor, putative, expressed FN3126-S Chr11 3550001 3590000 0 0 Deletion 39999 LOC_Os11g07170 receptor kinase, putative, expressed FN3126-S Chr11 3550001 3590000 0 0 Deletion 39999 LOC_Os11g07180 receptor protein kinase CLAVATA1 precursor, putative, expressed FN3126-S Chr11 3631001 3671000 0 0 Deletion 39999 LOC_Os11g07230 receptor kinase, putative, expressed FN3126-S Chr11 3631001 3671000 0 0 Deletion 39999 LOC_Os11g07240 serine/threonine-protein kinase BRI1-like 2 precursor, putative, expressed FN3126-S Chr11 3631001 3671000 0 0 Deletion 39999 LOC_Os11g07250 receptor kinase, putative, expressed FN3126-S Chr11 3631001 3671000 0 0 Deletion 39999 LOC_Os11g07260 expressed protein FN3126-S Chr11 3631001 3671000 0 0 Deletion 39999 LOC_Os11g07270 expressed protein FN3126-S Chr11 3631001 3671000 0 0 Deletion 39999 LOC_Os11g07280 coatomer subunit beta-1, putative, expressed FN3126-S Chr11 3631001 3671000 0 0 Deletion 39999 LOC_Os11g07650 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 3911001 3957000 0 0 Deletion 45999 LOC_Os11g07660 hypothetical protein FN3126-S Chr11 3911001 3957000 0 0 Deletion 45999 LOC_Os11g07670 dirigent, putative, expressed FN3126-S Chr11 3911001 3957000 0 0 Deletion 45999 LOC_Os11g07680 dirigent, putative, expressed FN3126-S Chr11 3911001 3957000 0 0 Deletion 45999 LOC_Os11g07690 dirigent, putative, expressed FN3126-S Chr11 3911001 3957000 0 0 Deletion 45999 LOC_Os11g07700 NAM, putative, expressed FN3126-S Chr11 3911001 3957000 0 0 Deletion 45999 LOC_Os11g07710 dirigent, putative, expressed FN3126-S Chr11 3911001 3957000 0 0 Deletion 45999 LOC_Os11g07720 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 3911001 3957000 0 0 Deletion 45999 LOC_Os11g07730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 3911001 3957000 0 0 Deletion 45999 LOC_Os11g07740 dirigent, putative, expressed FN3126-S Chr11 3911001 3957000 0 0 Deletion 45999 LOC_Os11g07750 expressed protein FN3126-S Chr11 3911001 3957000 0 0 Deletion 45999 LOC_Os11g07760 hypothetical protein FN3126-S Chr11 3911001 3957000 0 0 Deletion 45999 LOC_Os11g07830 dirigent, putative, expressed FN3126-S Chr11 3993001 4005000 0 0 Deletion 11999 LOC_Os11g07840 expressed protein FN3126-S Chr11 3993001 4005000 0 0 Deletion 11999 LOC_Os11g07850 Protein-tyrosine phosphatase domain containing protein, expressed FN3126-S Chr11 3993001 4005000 0 0 Deletion 11999 LOC_Os11g08330 POLD1 - Putative DNA polymerase delta catalytic subunit, expressed FN3126-S Chr11 4388001 4464000 0 0 Deletion 75999 LOC_Os11g08340 OsGH3.12 - Probable indole-3-acetic acid-amido synthetase, expressed FN3126-S Chr11 4388001 4464000 0 0 Deletion 75999 LOC_Os11g08350 expressed protein FN3126-S Chr11 4388001 4464000 0 0 Deletion 75999 LOC_Os11g08360 expressed protein FN3126-S Chr11 4388001 4464000 0 0 Deletion 75999 LOC_Os11g08370 transporter, major facilitator family, putative, expressed FN3126-S Chr11 4388001 4464000 0 0 Deletion 75999 LOC_Os11g08380 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed FN3126-S Chr11 4388001 4464000 0 0 Deletion 75999 LOC_Os11g08390 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 4388001 4464000 0 0 Deletion 75999 LOC_Os11g08400 expressed protein FN3126-S Chr11 4388001 4464000 0 0 Deletion 75999 LOC_Os11g08410 GATA zinc finger domain containing protein, expressed FN3126-S Chr11 4388001 4464000 0 0 Deletion 75999 LOC_Os11g08420 expressed protein FN3126-S Chr11 4388001 4464000 0 0 Deletion 75999 LOC_Os11g08430 expressed protein FN3126-S Chr11 4388001 4464000 0 0 Deletion 75999 LOC_Os11g08440 DnaK family protein, putative, expressed FN3126-S Chr11 4388001 4464000 0 0 Deletion 75999 LOC_Os11g08445 DnaK family protein, putative, expressed FN3126-S Chr11 4388001 4464000 0 0 Deletion 75999 LOC_Os11g08450 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr11 4388001 4464000 0 0 Deletion 75999 LOC_Os11g08569 cycloartenol synthase, putative, expressed FN3126-S Chr11 4525001 4557000 0 0 Deletion 31999 LOC_Os11g10250 expressed protein FN3126-S Chr11 5566001 5580000 0 0 Deletion 13999 LOC_Os11g10260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 5566001 5580000 0 0 Deletion 13999 LOC_Os11g10270 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr11 5566001 5580000 0 0 Deletion 13999 LOC_Os11g10434 expressed protein FN3126-S Chr11 5671001 5699000 0 0 Deletion 27999 LOC_Os11g10434 expressed protein FN3126-S Chr11 5671001 5699000 0 0 Deletion 27999 LOC_Os11g10440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr11 5671001 5699000 0 0 Deletion 27999 LOC_Os11g10450 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr11 5793001 5829000 0 0 Deletion 35999 LOC_Os11g10570 NBS-LRR disease resistance protein, putative, expressed FN3126-S Chr11 5793001 5829000 0 0 Deletion 35999 LOC_Os11g10580 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr11 5793001 5829000 0 0 Deletion 35999 LOC_Os11g10590 expressed protein FN3126-S Chr11 5793001 5829000 0 0 Deletion 35999 LOC_Os11g10600 expressed protein FN3126-S Chr11 5793001 5829000 0 0 Deletion 35999 LOC_Os11g10610 NBS-LRR disease resistance protein, putative, expressed FN3126-S Chr11 5793001 5829000 0 0 Deletion 35999 LOC_Os11g10620 NBS-LRR disease resistance protein, putative, expressed FN3126-S Chr11 5793001 5829000 0 0 Deletion 35999 LOC_Os11g10720 Cf2/Cf5 disease resistance protein, putative, expressed FN3126-S Chr11 5885001 5908000 0 0 Deletion 22999 LOC_Os11g10730 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 5885001 5908000 0 0 Deletion 22999 LOC_Os11g10740 tetratricopeptide-like helical, putative, expressed FN3126-S Chr11 5885001 5908000 0 0 Deletion 22999 LOC_Os11g10750 OsSCP48 - Putative Serine Carboxypeptidase homologue, expressed FN3126-S Chr11 5885001 5908000 0 0 Deletion 22999 LOC_Os11g10760 NBS-LRR disease resistance protein, putative, expressed FN3126-S Chr11 5885001 5908000 0 0 Deletion 22999 LOC_Os11g10830 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 6176001 6201000 0 0 Deletion 24999 LOC_Os11g11180 expressed protein FN3126-S Chr11 6176001 6201000 0 0 Deletion 24999 LOC_Os11g11200 expressed protein FN3126-S Chr11 6176001 6201000 0 0 Deletion 24999 LOC_Os11g13810 non-lysosomal glucosylceramidase, putative, expressed FN3126-S Chr11 6257316 Chr6 27345984 0 Translocation 0 FN3126-S Chr11 7667001 7687000 0 0 Deletion 19999 LOC_Os11g13900 expressed protein FN3126-S Chr11 7667001 7687000 0 0 Deletion 19999 LOC_Os11g13910 expressed protein FN3126-S Chr11 7667001 7687000 0 0 Deletion 19999 LOC_Os11g13920 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 7716001 7738000 0 0 Deletion 21999 LOC_Os11g13950 hypothetical protein FN3126-S Chr11 7716001 7738000 0 0 Deletion 21999 LOC_Os11g13960 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr11 7716001 7738000 0 0 Deletion 21999 LOC_Os11g14450 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 8110001 8126000 0 0 Deletion 15999 LOC_Os11g14460 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 8110001 8126000 0 0 Deletion 15999 LOC_Os11g14590 expressed protein FN3126-S Chr11 8221001 8274000 0 0 Deletion 52999 LOC_Os11g14600 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 8221001 8274000 0 0 Deletion 52999 LOC_Os11g14610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 8221001 8274000 0 0 Deletion 52999 LOC_Os11g14620 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 8221001 8274000 0 0 Deletion 52999 LOC_Os11g14630 expressed protein FN3126-S Chr11 8221001 8274000 0 0 Deletion 52999 LOC_Os11g14640 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr11 8221001 8274000 0 0 Deletion 52999 LOC_Os11g14650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 8221001 8274000 0 0 Deletion 52999 LOC_Os11g14660 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr11 8221001 8274000 0 0 Deletion 52999 LOC_Os11g14670 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr11 8221001 8274000 0 0 Deletion 52999 LOC_Os11g14680 hypothetical protein FN3126-S Chr11 8221001 8274000 0 0 Deletion 52999 LOC_Os11g14690 hypothetical protein FN3126-S Chr11 8221001 8274000 0 0 Deletion 52999 LOC_Os11g15040 S-adenosyl-L-methionine:benzoic acid/salicylic acid carboxyl methyltransferase, putative, expressed FN3126-S Chr11 8466001 8499000 0 0 Deletion 32999 LOC_Os11g15050 expressed protein FN3126-S Chr11 8466001 8499000 0 0 Deletion 32999 LOC_Os11g15060 SAM dependent carboxyl methyltransferase, putative, expressed FN3126-S Chr11 8466001 8499000 0 0 Deletion 32999 LOC_Os11g15070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 8466001 8499000 0 0 Deletion 32999 LOC_Os11g15080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 8466001 8499000 0 0 Deletion 32999 LOC_Os11g15090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 8466001 8499000 0 0 Deletion 32999 LOC_Os11g15100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 8581001 8610000 0 0 Deletion 28999 LOC_Os11g15220 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 8581001 8610000 0 0 Deletion 28999 LOC_Os11g15230 expressed protein FN3126-S Chr11 8581001 8610000 0 0 Deletion 28999 LOC_Os11g15240 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 8581001 8610000 0 0 Deletion 28999 LOC_Os11g15430 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr11 8741001 8834000 0 0 Deletion 92999 LOC_Os11g15440 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 8741001 8834000 0 0 Deletion 92999 LOC_Os11g15450 retrotransposon protein, putative, unclassified FN3126-S Chr11 8741001 8834000 0 0 Deletion 92999 LOC_Os11g15460 expressed protein FN3126-S Chr11 8741001 8834000 0 0 Deletion 92999 LOC_Os11g15470 expressed protein FN3126-S Chr11 8741001 8834000 0 0 Deletion 92999 LOC_Os11g15480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 8741001 8834000 0 0 Deletion 92999 LOC_Os11g15490 expressed protein FN3126-S Chr11 8741001 8834000 0 0 Deletion 92999 LOC_Os11g15500 stripe rust resistance protein Yr10, putative, expressed FN3126-S Chr11 8741001 8834000 0 0 Deletion 92999 LOC_Os11g15510 expressed protein FN3126-S Chr11 8741001 8834000 0 0 Deletion 92999 LOC_Os11g15520 OsSub62 - Putative Subtilisin homologue, expressed FN3126-S Chr11 8741001 8834000 0 0 Deletion 92999 LOC_Os11g15530 conserved hypothetical protein FN3126-S Chr11 8741001 8834000 0 0 Deletion 92999 LOC_Os11g15540 hypothetical protein FN3126-S Chr11 8741001 8834000 0 0 Deletion 92999 LOC_Os11g15550 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr11 8741001 8834000 0 0 Deletion 92999 LOC_Os11g15560 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 8741001 8834000 0 0 Deletion 92999 LOC_Os11g15570 Ser/Thr protein phosphatase family protein, putative, expressed FN3126-S Chr11 8741001 8834000 0 0 Deletion 92999 LOC_Os11g15670 NBS-LRR disease resistance protein, putative, expressed FN3126-S Chr11 8884001 8929000 0 0 Deletion 44999 LOC_Os11g15680 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr11 8884001 8929000 0 0 Deletion 44999 LOC_Os11g15690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 8884001 8929000 0 0 Deletion 44999 LOC_Os11g15700 NB-ARC domain containing protein, expressed FN3126-S Chr11 8884001 8929000 0 0 Deletion 44999 LOC_Os11g15710 hypothetical protein FN3126-S Chr11 8884001 8929000 0 0 Deletion 44999 LOC_Os11g15720 expressed protein FN3126-S Chr11 8884001 8929000 0 0 Deletion 44999 LOC_Os11g15730 hypothetical protein FN3126-S Chr11 8884001 8929000 0 0 Deletion 44999 LOC_Os11g15740 hypothetical protein FN3126-S Chr11 8884001 8929000 0 0 Deletion 44999 LOC_Os11g15750 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 8884001 8929000 0 0 Deletion 44999 LOC_Os11g15755 transposon protein, putative, unclassified, expressed FN3126-S Chr11 8884001 8929000 0 0 Deletion 44999 LOC_Os11g16310 expressed protein FN3126-S Chr11 9031542 Chr7 23098305 0 Translocation 0 FN3126-S Chr11 9034001 9055000 0 0 Deletion 20999 LOC_Os11g16380 hypothetical protein FN3126-S Chr11 9034001 9055000 0 0 Deletion 20999 LOC_Os11g16590 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed FN3126-S Chr11 9197001 9213000 0 0 Deletion 15999 LOC_Os11g16600 hypothetical protein FN3126-S Chr11 9197001 9213000 0 0 Deletion 15999 LOC_Os11g16610 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr11 9197001 9213000 0 0 Deletion 15999 LOC_Os11g16640 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr11 9230001 9356000 0 0 Deletion 125999 LOC_Os11g16650 hypothetical protein FN3126-S Chr11 9230001 9356000 0 0 Deletion 125999 LOC_Os11g16660 hypothetical protein FN3126-S Chr11 9230001 9356000 0 0 Deletion 125999 LOC_Os11g16670 expressed protein FN3126-S Chr11 9230001 9356000 0 0 Deletion 125999 LOC_Os11g16680 transferase family protein, putative, expressed FN3126-S Chr11 9230001 9356000 0 0 Deletion 125999 LOC_Os11g16690 retrotransposon protein, putative, unclassified FN3126-S Chr11 9230001 9356000 0 0 Deletion 125999 LOC_Os11g16710 expressed protein FN3126-S Chr11 9230001 9356000 0 0 Deletion 125999 LOC_Os11g16720 expressed protein FN3126-S Chr11 9230001 9356000 0 0 Deletion 125999 LOC_Os11g16730 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr11 9230001 9356000 0 0 Deletion 125999 LOC_Os11g16740 transposon protein, putative, unclassified, expressed FN3126-S Chr11 9230001 9356000 0 0 Deletion 125999 LOC_Os11g16750 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr11 9230001 9356000 0 0 Deletion 125999 LOC_Os11g16760 hypothetical protein FN3126-S Chr11 9230001 9356000 0 0 Deletion 125999 LOC_Os11g16770 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed FN3126-S Chr11 9230001 9356000 0 0 Deletion 125999 LOC_Os11g16780 expressed protein FN3126-S Chr11 9230001 9356000 0 0 Deletion 125999 LOC_Os11g16790 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr11 9230001 9356000 0 0 Deletion 125999 LOC_Os11g16800 expressed protein FN3126-S Chr11 9230001 9356000 0 0 Deletion 125999 LOC_Os11g16810 transposon protein, putative, unclassified FN3126-S Chr11 9230001 9356000 0 0 Deletion 125999 LOC_Os11g16820 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 9230001 9356000 0 0 Deletion 125999 LOC_Os11g16830 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr11 9230001 9356000 0 0 Deletion 125999 LOC_Os11g16840 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr11 9230001 9356000 0 0 Deletion 125999 LOC_Os11g16850 expressed protein FN3126-S Chr11 9503001 9553000 0 0 Deletion 49999 LOC_Os11g17110 disease resistance protein RPM1, putative FN3126-S Chr11 9503001 9553000 0 0 Deletion 49999 LOC_Os11g17120 disease resistance protein RPM1, putative FN3126-S Chr11 9503001 9553000 0 0 Deletion 49999 LOC_Os11g17130 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 9503001 9553000 0 0 Deletion 49999 LOC_Os11g17150 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 9503001 9553000 0 0 Deletion 49999 LOC_Os11g17160 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 9658001 9668000 0 0 Deletion 9999 LOC_Os11g17330 stripe rust resistance protein Yr10, putative, expressed FN3126-S Chr11 9658001 9668000 0 0 Deletion 9999 LOC_Os11g17400 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr11 9702001 9727000 0 0 Deletion 24999 LOC_Os11g17400 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr11 9702001 9727000 0 0 Deletion 24999 LOC_Os11g17410 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr11 9702001 9727000 0 0 Deletion 24999 LOC_Os11g17420 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 9702001 9727000 0 0 Deletion 24999 LOC_Os11g17430 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr11 9702001 9727000 0 0 Deletion 24999 LOC_Os11g17440 enoyl-CoA hydratase/isomerase family protein, expressed FN3126-S Chr11 9985001 10008000 0 0 Deletion 22999 LOC_Os11g17850 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr11 9985001 10008000 0 0 Deletion 22999 LOC_Os11g17870 expressed protein FN3126-S Chr11 9985001 10008000 0 0 Deletion 22999 LOC_Os11g18070 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 11163001 11174000 0 0 Deletion 10999 LOC_Os12g19260 tetratricopeptide-like helical, putative, expressed FN3126-S Chr12 11163001 11174000 0 0 Deletion 10999 LOC_Os12g19270 expressed protein FN3126-S Chr12 11163001 11174000 0 0 Deletion 10999 LOC_Os12g19350 expressed protein FN3126-S Chr12 11212001 11243000 0 0 Deletion 30999 LOC_Os12g19370 DNA polymerase I family protein, expressed FN3126-S Chr12 11212001 11243000 0 0 Deletion 30999 LOC_Os12g19381 ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed FN3126-S Chr12 11263001 11283000 0 0 Deletion 19999 LOC_Os12g19530 ATP-binding region, ATPase-like domain-containing protein, putative, expressed FN3126-S Chr12 11352001 11365000 0 0 Deletion 12999 LOC_Os12g19549 telomerase reverse transcriptase, putative, expressed FN3126-S Chr12 11352001 11365000 0 0 Deletion 12999 LOC_Os12g19630 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 11448001 11466000 0 0 Deletion 17999 LOC_Os12g19640 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr12 11448001 11466000 0 0 Deletion 17999 LOC_Os12g19650 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr12 11448001 11466000 0 0 Deletion 17999 LOC_Os12g19660 expressed protein FN3126-S Chr12 11448001 11466000 0 0 Deletion 17999 LOC_Os12g19670 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr12 11448001 11466000 0 0 Deletion 17999 LOC_Os12g20169 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr12 11561156 Chr2 29427397 0 Translocation 0 FN3126-S Chr12 11759001 11783000 0 0 Deletion 23999 LOC_Os12g20190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr12 11759001 11783000 0 0 Deletion 23999 LOC_Os12g20200 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 11759001 11783000 0 0 Deletion 23999 LOC_Os12g20210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr12 11827001 11860000 0 0 Deletion 32999 LOC_Os12g20280 expressed protein FN3126-S Chr12 11827001 11860000 0 0 Deletion 32999 LOC_Os12g20290 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 11827001 11860000 0 0 Deletion 32999 LOC_Os12g20300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr12 11827001 11860000 0 0 Deletion 32999 LOC_Os12g20340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr12 11880001 11891000 0 0 Deletion 10999 LOC_Os12g20350 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 11880001 11891000 0 0 Deletion 10999 LOC_Os12g20360 hypothetical protein FN3126-S Chr12 12174001 12183000 0 0 Deletion 8999 LOC_Os12g21670 hypothetical protein FN3126-S Chr12 12174001 12183000 0 0 Deletion 8999 LOC_Os12g21680 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 12174001 12183000 0 0 Deletion 8999 LOC_Os12g21760 RALFL25 - Rapid ALkalinization Factor RALF family protein precursor, putative, expressed FN3126-S Chr12 12369001 12387000 0 0 Deletion 17999 LOC_Os12g22000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr12 12369001 12387000 0 0 Deletion 17999 LOC_Os12g22020 expressed protein FN3126-S Chr12 12369001 12387000 0 0 Deletion 17999 LOC_Os12g22690 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 12813001 12837000 0 0 Deletion 23999 LOC_Os12g22700 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 12813001 12837000 0 0 Deletion 23999 LOC_Os12g22710 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 12813001 12837000 0 0 Deletion 23999 LOC_Os12g22720 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 12813001 12837000 0 0 Deletion 23999 LOC_Os12g22730 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 12813001 12837000 0 0 Deletion 23999 LOC_Os12g22740 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 12813001 12837000 0 0 Deletion 23999 LOC_Os12g23514 expressed protein FN3126-S Chr12 13295001 13309000 0 0 Deletion 13999 LOC_Os12g23520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr12 13295001 13309000 0 0 Deletion 13999 LOC_Os12g23910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr12 13355256 13395518 0 0 Inversion 40262 FN3126-S Chr12 13408963 Chr1 24842225 0 Translocation 0 FN3126-S Chr12 13410191 Chr4 12546166 0 Translocation 0 LOC_Os04g22130 conserved hypothetical protein FN3126-S Chr12 13583001 13610000 0 0 Deletion 26999 LOC_Os12g23920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr12 13583001 13610000 0 0 Deletion 26999 LOC_Os12g23930 protein kinase domain containing protein, expressed FN3126-S Chr12 13583001 13610000 0 0 Deletion 26999 LOC_Os12g23940 protein kinase domain containing protein, expressed FN3126-S Chr12 13583001 13610000 0 0 Deletion 26999 LOC_Os12g23990 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 13630001 13649000 0 0 Deletion 18999 LOC_Os12g24010 hypothetical protein FN3126-S Chr12 13630001 13649000 0 0 Deletion 18999 LOC_Os12g24680 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr12 14134001 14163000 0 0 Deletion 28999 LOC_Os12g24680 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr12 14134001 14163000 0 0 Deletion 28999 LOC_Os12g24690 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr12 14134001 14163000 0 0 Deletion 28999 LOC_Os12g24700 retrotransposon protein, putative, Ty1-copia subclass FN3126-S Chr12 1421001 1457000 0 0 Deletion 35999 LOC_Os12g03570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr12 1421001 1457000 0 0 Deletion 35999 LOC_Os12g03580 expressed protein FN3126-S Chr12 1421001 1457000 0 0 Deletion 35999 LOC_Os12g03594 OsFBX437 - F-box domain containing protein, expressed FN3126-S Chr12 1421001 1457000 0 0 Deletion 35999 LOC_Os12g03601 expressed protein FN3126-S Chr12 1421001 1457000 0 0 Deletion 35999 LOC_Os12g03610 expressed protein FN3126-S Chr12 1421001 1457000 0 0 Deletion 35999 LOC_Os12g03630 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed FN3126-S Chr12 14232001 14254000 0 0 Deletion 21999 LOC_Os12g24810 expressed protein FN3126-S Chr12 14232001 14254000 0 0 Deletion 21999 LOC_Os12g24820 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr12 14232001 14254000 0 0 Deletion 21999 LOC_Os12g24830 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr12 14232001 14254000 0 0 Deletion 21999 LOC_Os12g24840 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr12 14232001 14254000 0 0 Deletion 21999 LOC_Os12g25070 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 14397001 14437000 0 0 Deletion 39999 LOC_Os12g25080 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr12 14397001 14437000 0 0 Deletion 39999 LOC_Os12g25090 expressed protein FN3126-S Chr12 14397001 14437000 0 0 Deletion 39999 LOC_Os12g25100 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr12 14397001 14437000 0 0 Deletion 39999 LOC_Os12g25110 expressed protein FN3126-S Chr12 14397001 14437000 0 0 Deletion 39999 LOC_Os12g25120 core histone H2A/H2B/H3/H4, putative, expressed FN3126-S Chr12 14397001 14437000 0 0 Deletion 39999 LOC_Os12g25130 CRP8 - Cysteine-rich family protein precursor, expressed FN3126-S Chr12 14397001 14437000 0 0 Deletion 39999 LOC_Os12g25140 hypothetical protein FN3126-S Chr12 14397001 14437000 0 0 Deletion 39999 LOC_Os12g25160 MATE, putative, expressed FN3126-S Chr12 14443001 14475000 0 0 Deletion 31999 LOC_Os12g25170 NB-ARC domain containing disease resistance protein, putative, expressed FN3126-S Chr12 14443001 14475000 0 0 Deletion 31999 LOC_Os12g25180 expressed protein FN3126-S Chr12 14443001 14475000 0 0 Deletion 31999 LOC_Os12g25190 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr12 14443001 14475000 0 0 Deletion 31999 LOC_Os12g25260 expressed protein FN3126-S Chr12 14525001 14565000 0 0 Deletion 39999 LOC_Os12g25280 expressed protein FN3126-S Chr12 14525001 14565000 0 0 Deletion 39999 LOC_Os12g25290 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr12 14525001 14565000 0 0 Deletion 39999 LOC_Os12g25300 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr12 14785123 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3126-S Chr12 15238001 15313000 0 0 Deletion 74999 LOC_Os12g26170 expressed protein FN3126-S Chr12 15238001 15313000 0 0 Deletion 74999 LOC_Os12g26180 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 15238001 15313000 0 0 Deletion 74999 LOC_Os12g26190 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 15238001 15313000 0 0 Deletion 74999 LOC_Os12g26204 transposon protein, putative, unclassified, expressed FN3126-S Chr12 15238001 15313000 0 0 Deletion 74999 LOC_Os12g26220 expressed protein FN3126-S Chr12 15238001 15313000 0 0 Deletion 74999 LOC_Os12g26240 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 15238001 15313000 0 0 Deletion 74999 LOC_Os12g26250 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 15238001 15313000 0 0 Deletion 74999 LOC_Os12g26260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr12 15238001 15313000 0 0 Deletion 74999 LOC_Os12g26280 retrotransposon protein, putative, unclassified FN3126-S Chr12 1525001 1543000 0 0 Deletion 17999 LOC_Os12g03760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr12 1525001 1543000 0 0 Deletion 17999 LOC_Os12g03770 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr12 1525001 1543000 0 0 Deletion 17999 LOC_Os12g03780 hypothetical protein FN3126-S Chr12 1525001 1543000 0 0 Deletion 17999 LOC_Os12g03790 rhamnogalacturonate lyase, putative, expressed FN3126-S Chr12 1525001 1543000 0 0 Deletion 17999 LOC_Os12g04050 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 15331001 15379000 0 0 Deletion 47999 LOC_Os12g26300 expressed protein FN3126-S Chr12 15331001 15379000 0 0 Deletion 47999 LOC_Os12g26310 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 15331001 15379000 0 0 Deletion 47999 LOC_Os12g26320 retrotransposon, putative, centromere-specific, expressed FN3126-S Chr12 15331001 15379000 0 0 Deletion 47999 LOC_Os12g26330 expressed protein FN3126-S Chr12 15331001 15379000 0 0 Deletion 47999 LOC_Os12g26590 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 15525289 15525299 0 0 Deletion 10 frameshift_variant HET LOC_Os12g26560 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 15581001 15633000 0 0 Deletion 51999 LOC_Os12g26620 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr12 15581001 15633000 0 0 Deletion 51999 LOC_Os12g26630 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr12 15581001 15633000 0 0 Deletion 51999 LOC_Os12g26640 retrotransposon protein, putative, unclassified FN3126-S Chr12 15581001 15633000 0 0 Deletion 51999 LOC_Os12g26650 retrotransposon protein, putative, unclassified FN3126-S Chr12 15581001 15633000 0 0 Deletion 51999 LOC_Os12g26660 retrotransposon protein, putative, LINE subclass, expressed FN3126-S Chr12 15581001 15633000 0 0 Deletion 51999 LOC_Os12g26670 hypothetical protein FN3126-S Chr12 15720001 15734000 0 0 Deletion 13999 LOC_Os12g26840 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr12 15720001 15734000 0 0 Deletion 13999 LOC_Os12g26850 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 15720001 15734000 0 0 Deletion 13999 LOC_Os12g27090 expressed protein FN3126-S Chr12 15861001 15893000 0 0 Deletion 31999 LOC_Os12g27090 expressed protein FN3126-S Chr12 15861001 15893000 0 0 Deletion 31999 LOC_Os12g27096 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr12 15950001 15973000 0 0 Deletion 22999 LOC_Os12g27190 expressed protein FN3126-S Chr12 15950001 15973000 0 0 Deletion 22999 LOC_Os12g27200 expressed protein FN3126-S Chr12 15950001 15973000 0 0 Deletion 22999 LOC_Os12g27210 expressed protein FN3126-S Chr12 15950001 15973000 0 0 Deletion 22999 LOC_Os12g27220 transferase family protein, putative, expressed FN3126-S Chr12 15950001 15973000 0 0 Deletion 22999 LOC_Os12g27370 expressed protein FN3126-S Chr12 16100001 16144000 0 0 Deletion 43999 LOC_Os12g27390 transposon protein, putative, unclassified, expressed FN3126-S Chr12 16100001 16144000 0 0 Deletion 43999 LOC_Os12g27400 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr12 16100001 16144000 0 0 Deletion 43999 LOC_Os12g27410 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 16100001 16144000 0 0 Deletion 43999 LOC_Os12g27420 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 16100001 16144000 0 0 Deletion 43999 LOC_Os12g27430 expressed protein FN3126-S Chr12 16454001 16480000 0 0 Deletion 25999 LOC_Os12g27910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr12 16454001 16480000 0 0 Deletion 25999 LOC_Os12g27920 expressed protein FN3126-S Chr12 16454001 16480000 0 0 Deletion 25999 LOC_Os12g27930 expressed protein FN3126-S Chr12 16454001 16480000 0 0 Deletion 25999 LOC_Os12g27940 expressed protein FN3126-S Chr12 16523001 16537000 0 0 Deletion 13999 LOC_Os12g28270 amidohydrolase, putative, expressed FN3126-S Chr12 16713001 16724000 0 0 Deletion 10999 LOC_Os12g28540 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 1710001 1728000 0 0 Deletion 17999 LOC_Os12g04070 expressed protein FN3126-S Chr12 1710001 1728000 0 0 Deletion 17999 LOC_Os12g04080 transferase family protein, putative, expressed FN3126-S Chr12 1710001 1728000 0 0 Deletion 17999 LOC_Os12g04090 zinc finger, C3HC4 type domain containing protein FN3126-S Chr12 1710001 1728000 0 0 Deletion 17999 LOC_Os12g04100 cytochrome P450, putative, expressed FN3126-S Chr12 1710001 1728000 0 0 Deletion 17999 LOC_Os12g04110 pentatricopeptide, putative, expressed FN3126-S Chr12 1710001 1728000 0 0 Deletion 17999 LOC_Os12g04120 phosphoglycerate mutase, putative, expressed FN3126-S Chr12 1710001 1728000 0 0 Deletion 17999 LOC_Os12g05480 expressed protein FN3126-S Chr12 18161001 18189000 0 0 Deletion 27999 LOC_Os12g30280 retrotransposon protein, putative, unclassified FN3126-S Chr12 18161001 18189000 0 0 Deletion 27999 LOC_Os12g30290 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 18161001 18189000 0 0 Deletion 27999 LOC_Os12g30310 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr12 18161001 18189000 0 0 Deletion 27999 LOC_Os12g31870 expressed protein FN3126-S Chr12 19266001 19284000 0 0 Deletion 17999 LOC_Os12g31980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr12 19266001 19284000 0 0 Deletion 17999 LOC_Os12g31990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr12 19329001 19417000 0 0 Deletion 87999 LOC_Os12g32040 ZmEBE-1 protein, putative, expressed FN3126-S Chr12 19329001 19417000 0 0 Deletion 87999 LOC_Os12g32050 expressed protein FN3126-S Chr12 19329001 19417000 0 0 Deletion 87999 LOC_Os12g32060 expressed protein FN3126-S Chr12 19329001 19417000 0 0 Deletion 87999 LOC_Os12g32080 expressed protein FN3126-S Chr12 19329001 19417000 0 0 Deletion 87999 LOC_Os12g32090 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr12 19329001 19417000 0 0 Deletion 87999 LOC_Os12g32110 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr12 19329001 19417000 0 0 Deletion 87999 LOC_Os12g32120 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr12 19329001 19417000 0 0 Deletion 87999 LOC_Os12g32130 trehalose phosphatase, putative, expressed FN3126-S Chr12 19329001 19417000 0 0 Deletion 87999 LOC_Os12g32140 transposon protein, putative, unclassified, expressed FN3126-S Chr12 19329001 19417000 0 0 Deletion 87999 LOC_Os12g32150 expressed protein FN3126-S Chr12 19329001 19417000 0 0 Deletion 87999 LOC_Os12g32160 expressed protein FN3126-S Chr12 19329001 19417000 0 0 Deletion 87999 LOC_Os12g32170 expressed protein FN3126-S Chr12 19549001 19577000 0 0 Deletion 27999 LOC_Os12g32420 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 19549001 19577000 0 0 Deletion 27999 LOC_Os12g32430 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 19549001 19577000 0 0 Deletion 27999 LOC_Os12g32440 retrotransposon protein, putative, Ty1-copia subclass FN3126-S Chr12 19549001 19577000 0 0 Deletion 27999 LOC_Os12g32480 expressed protein FN3126-S Chr12 19608001 19620000 0 0 Deletion 11999 LOC_Os12g32499 expressed protein FN3126-S Chr12 19608001 19620000 0 0 Deletion 11999 LOC_Os12g33130 expressed protein FN3126-S Chr12 20047001 20080000 0 0 Deletion 32999 LOC_Os12g33150 expressed protein FN3126-S Chr12 20047001 20080000 0 0 Deletion 32999 LOC_Os12g33160 RGH1A, putative, expressed FN3126-S Chr12 20047001 20080000 0 0 Deletion 32999 LOC_Os12g33165 expressed protein FN3126-S Chr12 20047001 20080000 0 0 Deletion 32999 LOC_Os12g33170 retrotransposon protein, putative, unclassified FN3126-S Chr12 20047001 20080000 0 0 Deletion 32999 LOC_Os12g33180 pnn protein, putative, expressed FN3126-S Chr12 20047001 20080000 0 0 Deletion 32999 LOC_Os12g33390 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 21113001 21120000 0 0 Deletion 6999 FN3126-S Chr12 21247509 21247511 0 0 Deletion 2 INTERGENIC HET FN3126-S Chr12 21733001 21762000 0 0 Deletion 28999 LOC_Os12g35720 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr12 21733001 21762000 0 0 Deletion 28999 LOC_Os12g35730 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr12 21733001 21762000 0 0 Deletion 28999 LOC_Os12g35740 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr12 21783001 21842000 0 0 Deletion 58999 LOC_Os12g35810 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr12 21783001 21842000 0 0 Deletion 58999 LOC_Os12g35820 expressed protein FN3126-S Chr12 21783001 21842000 0 0 Deletion 58999 LOC_Os12g35830 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr12 21783001 21842000 0 0 Deletion 58999 LOC_Os12g35840 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr12 21783001 21842000 0 0 Deletion 58999 LOC_Os12g35880 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 21861001 21924000 0 0 Deletion 62999 LOC_Os12g35890 FAD dependent oxidoreductase domain containing protein, expressed FN3126-S Chr12 21861001 21924000 0 0 Deletion 62999 LOC_Os12g35895 expressed protein FN3126-S Chr12 21861001 21924000 0 0 Deletion 62999 LOC_Os12g35900 transposon protein, putative, Pong sub-class FN3126-S Chr12 21861001 21924000 0 0 Deletion 62999 LOC_Os12g35910 expressed protein FN3126-S Chr12 21861001 21924000 0 0 Deletion 62999 LOC_Os12g35920 expressed protein FN3126-S Chr12 21861001 21924000 0 0 Deletion 62999 LOC_Os12g36720 RGH1A, putative, expressed FN3126-S Chr12 22020001 22040000 0 0 Deletion 19999 FN3126-S Chr12 22487001 22507000 0 0 Deletion 19999 LOC_Os12g36720 RGH1A, putative, expressed FN3126-S Chr12 22487001 22507000 0 0 Deletion 19999 LOC_Os12g36730 stripe rust resistance protein Yr10, putative, expressed FN3126-S Chr12 22487001 22507000 0 0 Deletion 19999 LOC_Os12g36735 expressed protein FN3126-S Chr12 22688001 22719000 0 0 Deletion 30999 LOC_Os12g37020 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr12 22688001 22719000 0 0 Deletion 30999 LOC_Os12g37030 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr12 22688001 22719000 0 0 Deletion 30999 LOC_Os12g37040 retrotransposon protein, putative, unclassified FN3126-S Chr12 22688001 22719000 0 0 Deletion 30999 LOC_Os12g37050 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 22688001 22719000 0 0 Deletion 30999 LOC_Os12g37060 expressed protein FN3126-S Chr12 22688001 22719000 0 0 Deletion 30999 LOC_Os12g37070 expressed protein FN3126-S Chr12 22688001 22719000 0 0 Deletion 30999 LOC_Os12g37939 unc-93 homolog A, putative, expressed FN3126-S Chr12 23189364 23189364 0 0 Insertion 1 upstream_gene_variant HET FN3126-S Chr12 23308001 23327000 0 0 Deletion 18999 LOC_Os12g37960 diaminopimelate epimerase, chloroplast precursor, putative, expressed FN3126-S Chr12 23308001 23327000 0 0 Deletion 18999 LOC_Os12g37970 MYB family transcription factor, putative, expressed FN3126-S Chr12 23308001 23327000 0 0 Deletion 18999 LOC_Os12g39590 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 24426001 24452000 0 0 Deletion 25999 LOC_Os12g39600 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 24426001 24452000 0 0 Deletion 25999 LOC_Os12g39610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr12 24426001 24452000 0 0 Deletion 25999 LOC_Os12g40279 protein kinase domain containing protein, expressed FN3126-S Chr12 26242001 26265000 0 0 Deletion 22999 FN3126-S Chr12 2689001 2707000 0 0 Deletion 17999 LOC_Os12g05860 Cupin domain containing protein, expressed FN3126-S Chr12 2689001 2707000 0 0 Deletion 17999 LOC_Os12g05870 Cupin domain containing protein, expressed FN3126-S Chr12 2689001 2707000 0 0 Deletion 17999 LOC_Os12g05880 Cupin domain containing protein, expressed FN3126-S Chr12 2689001 2707000 0 0 Deletion 17999 LOC_Os12g05890 expressed protein FN3126-S Chr12 27102488 Chr4 1112365 0 Translocation 0 LOC_Os04g02850 pentatricopeptide, putative, expressed FN3126-S Chr12 27311001 27318000 0 0 Deletion 6999 LOC_Os01g02890 phosphatidylserine synthase, putative, expressed FN3126-S Chr12 27311001 27318000 0 0 Deletion 6999 LOC_Os12g44040 transposon protein, putative, unclassified, expressed FN3126-S Chr12 27311001 27318000 0 0 Deletion 6999 LOC_Os12g44050 purple acid phosphatase precursor, putative, expressed FN3126-S Chr12 27446979 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g44280 subtilase, putative, expressed FN3126-S Chr12 3123001 3148000 0 0 Deletion 24999 LOC_Os12g06490 STE_PAK_Ste20_Slob_Wnk.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed FN3126-S Chr12 3123001 3148000 0 0 Deletion 24999 LOC_Os12g06500 expressed protein FN3126-S Chr12 3123001 3148000 0 0 Deletion 24999 LOC_Os12g06510 calcineurin B, putative, expressed FN3126-S Chr12 3253666 Chr8 17492512 0 Translocation 0 LOC_Os08g28630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr12 3253666 Chr8 17492512 0 Translocation 0 LOC_Os12g06680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr12 3367001 3390000 0 0 Deletion 22999 LOC_Os12g06920 NBS-LRR disease resistance protein, putative, expressed FN3126-S Chr12 3367001 3390000 0 0 Deletion 22999 LOC_Os12g06930 expressed protein FN3126-S Chr12 3367001 3390000 0 0 Deletion 22999 LOC_Os12g07060 chaperone protein dnaJ, putative, expressed FN3126-S Chr12 4133001 4159000 0 0 Deletion 25999 LOC_Os12g08120 expressed protein FN3126-S Chr12 4133001 4159000 0 0 Deletion 25999 LOC_Os12g08130 amino acid transporter, putative, expressed FN3126-S Chr12 4287001 4334000 0 0 Deletion 46999 LOC_Os12g08440 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 4287001 4334000 0 0 Deletion 46999 LOC_Os12g08450 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 4287001 4334000 0 0 Deletion 46999 LOC_Os12g08460 retrotransposon protein, putative, unclassified FN3126-S Chr12 4287001 4334000 0 0 Deletion 46999 LOC_Os12g08470 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 4287001 4334000 0 0 Deletion 46999 LOC_Os12g08480 expressed protein FN3126-S Chr12 4287001 4334000 0 0 Deletion 46999 LOC_Os12g08490 transposon protein, putative, unclassified, expressed FN3126-S Chr12 4287001 4334000 0 0 Deletion 46999 LOC_Os12g08500 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr12 4287001 4334000 0 0 Deletion 46999 LOC_Os12g08510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr12 4287001 4334000 0 0 Deletion 46999 LOC_Os12g08530 expressed protein FN3126-S Chr12 4287001 4334000 0 0 Deletion 46999 LOC_Os12g08540 retrotransposon protein, putative, unclassified FN3126-S Chr12 5122001 5148000 0 0 Deletion 25999 LOC_Os12g09710 NBS-LRR disease resistance protein, putative, expressed FN3126-S Chr12 5122001 5148000 0 0 Deletion 25999 LOC_Os12g09720 dirigent, putative, expressed FN3126-S Chr12 5122001 5148000 0 0 Deletion 25999 LOC_Os12g09739 pollen signalling protein with adenylyl cyclase activity, putative, expressed FN3126-S Chr12 5281001 5309000 0 0 Deletion 27999 LOC_Os12g09990 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 5281001 5309000 0 0 Deletion 27999 LOC_Os12g10000 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr12 5281001 5309000 0 0 Deletion 27999 LOC_Os12g10010 expressed protein FN3126-S Chr12 6861001 6886000 0 0 Deletion 24999 LOC_Os12g12470 NADP-dependent oxidoreductase, putative, expressed FN3126-S Chr12 6861001 6886000 0 0 Deletion 24999 LOC_Os12g12480 retrotransposon protein, putative, unclassified FN3126-S Chr12 6861001 6886000 0 0 Deletion 24999 LOC_Os12g12490 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr12 6861001 6886000 0 0 Deletion 24999 LOC_Os12g13010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr12 7206001 7220000 0 0 Deletion 13999 LOC_Os12g13020 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr12 7206001 7220000 0 0 Deletion 13999 LOC_Os12g13590 exocyst complex component 5, putative, expressed FN3126-S Chr12 740001 764000 0 0 Deletion 23999 LOC_Os12g02340 LTPL14 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3126-S Chr12 740001 764000 0 0 Deletion 23999 LOC_Os12g02350 RING-H2 finger protein, putative, expressed FN3126-S Chr12 740001 764000 0 0 Deletion 23999 LOC_Os12g03554 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed FN3126-S Chr12 753390 753390 0 0 Insertion 1 intergenic_region HET FN3126-S Chr12 753394 753394 0 0 Insertion 1 intergenic_region HET FN3126-S Chr12 8402035 Chr6 13377163 0 Translocation 0 FN3126-S Chr12 8429001 8446000 0 0 Deletion 16999 LOC_Os12g14730 hypothetical protein FN3126-S Chr12 8429001 8446000 0 0 Deletion 16999 LOC_Os12g14740 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr12 8429001 8446000 0 0 Deletion 16999 LOC_Os12g14750 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr12 8429001 8446000 0 0 Deletion 16999 LOC_Os12g16780 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr12 9618001 9641000 0 0 Deletion 22999 LOC_Os12g16790 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr12 9618001 9641000 0 0 Deletion 22999 LOC_Os12g16800 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr12 9618001 9641000 0 0 Deletion 22999 LOC_Os12g16810 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr12 9618001 9641000 0 0 Deletion 22999 LOC_Os12g17290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr12 9898001 9908000 0 0 Deletion 9999 LOC_Os12g17300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr12 9898001 9908000 0 0 Deletion 9999 LOC_Os12g17310 prefoldin, putative, expressed FN3126-S Chr12 9898001 9908000 0 0 Deletion 9999 LOC_Os12g18900 aminotransferase, putative, expressed FN3126-S Chr2 10153001 10183000 0 0 Deletion 29999 LOC_Os02g17650 tocopherol cyclase, chloroplast precursor, putative, expressed FN3126-S Chr2 10153001 10183000 0 0 Deletion 29999 LOC_Os02g17660 expressed protein FN3126-S Chr2 10153001 10183000 0 0 Deletion 29999 LOC_Os02g17670 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 10153001 10183000 0 0 Deletion 29999 LOC_Os02g17680 ethylene-responsive protein related, putative, expressed FN3126-S Chr2 10153001 10183000 0 0 Deletion 29999 LOC_Os02g19260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr2 11666001 11676000 0 0 Deletion 9999 LOC_Os02g19860 pre-mRNA-splicing factor ATP-dependent RNA helicase, putative, expressed FN3126-S Chr2 11666001 11676000 0 0 Deletion 9999 LOC_Os02g20040 loricrin, putative, expressed FN3126-S Chr2 1176519 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN3126-S Chr2 11799001 11816000 0 0 Deletion 16999 LOC_Os02g20050 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr2 11799001 11816000 0 0 Deletion 16999 LOC_Os02g20060 expressed protein FN3126-S Chr2 11799001 11816000 0 0 Deletion 16999 LOC_Os02g20590 MBTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3126-S Chr2 13453001 13469000 0 0 Deletion 15999 LOC_Os02g22580 expressed protein FN3126-S Chr2 13453001 13469000 0 0 Deletion 15999 LOC_Os02g22590 expressed protein FN3126-S Chr2 13453001 13469000 0 0 Deletion 15999 LOC_Os02g22700 retrotransposon, putative, centromere-specific, expressed FN3126-S Chr2 13526001 13561000 0 0 Deletion 34999 LOC_Os02g22710 expressed protein FN3126-S Chr2 13526001 13561000 0 0 Deletion 34999 LOC_Os02g22720 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 13526001 13561000 0 0 Deletion 34999 LOC_Os02g22730 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 13526001 13561000 0 0 Deletion 34999 LOC_Os02g22740 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 13526001 13561000 0 0 Deletion 34999 LOC_Os02g22750 expressed protein FN3126-S Chr2 13526001 13561000 0 0 Deletion 34999 LOC_Os02g22760 retrotransposon protein, putative, LINE subclass, expressed FN3126-S Chr2 13526001 13561000 0 0 Deletion 34999 LOC_Os02g22770 expressed protein FN3126-S Chr2 13526001 13561000 0 0 Deletion 34999 LOC_Os02g22780 T-complex protein, putative, expressed FN3126-S Chr2 1354001 1377000 0 0 Deletion 22999 LOC_Os02g03360 expressed protein FN3126-S Chr2 1354001 1377000 0 0 Deletion 22999 LOC_Os02g03370 expressed protein FN3126-S Chr2 1354001 1377000 0 0 Deletion 22999 LOC_Os02g03380 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 1354001 1377000 0 0 Deletion 22999 LOC_Os02g03390 expressed protein FN3126-S Chr2 1354001 1377000 0 0 Deletion 22999 LOC_Os02g03490 major ampullate spidroin 3, putative, expressed FN3126-S Chr2 14372001 14419000 0 0 Deletion 46999 LOC_Os02g24790 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 14372001 14419000 0 0 Deletion 46999 LOC_Os02g24800 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 14372001 14419000 0 0 Deletion 46999 LOC_Os02g24810 expressed protein FN3126-S Chr2 14372001 14419000 0 0 Deletion 46999 LOC_Os02g24820 hypothetical protein FN3126-S Chr2 14372001 14419000 0 0 Deletion 46999 LOC_Os02g24830 expressed protein FN3126-S Chr2 14372001 14419000 0 0 Deletion 46999 LOC_Os02g24840 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr2 14372001 14419000 0 0 Deletion 46999 LOC_Os02g24850 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr2 14372001 14419000 0 0 Deletion 46999 LOC_Os02g24860 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 14372001 14419000 0 0 Deletion 46999 LOC_Os02g24870 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr2 14372001 14419000 0 0 Deletion 46999 LOC_Os02g25250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr2 1458309 1458316 0 0 Deletion 7 INTRON HOMO FN3126-S Chr2 14825001 14859000 0 0 Deletion 33999 LOC_Os02g25440 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 14825001 14859000 0 0 Deletion 33999 LOC_Os02g25540 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr2 14922001 14937000 0 0 Deletion 14999 LOC_Os02g25550 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr2 14922001 14937000 0 0 Deletion 14999 LOC_Os02g25560 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr2 14922001 14937000 0 0 Deletion 14999 LOC_Os02g25640 glutelin, putative, expressed FN3126-S Chr2 14991001 15014000 0 0 Deletion 22999 LOC_Os02g25650 expressed protein FN3126-S Chr2 14991001 15014000 0 0 Deletion 22999 LOC_Os02g25710 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 15047001 15064000 0 0 Deletion 16999 LOC_Os02g25720 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr2 15047001 15064000 0 0 Deletion 16999 LOC_Os02g26480 OsSCP7 - Putative Serine Carboxypeptidase homologue, expressed FN3126-S Chr2 15834001 15854000 0 0 Deletion 19999 LOC_Os02g26984 expressed protein FN3126-S Chr2 15834001 15854000 0 0 Deletion 19999 LOC_Os02g27110 expressed protein FN3126-S Chr2 15928001 15945000 0 0 Deletion 16999 LOC_Os02g27110 expressed protein FN3126-S Chr2 16310001 16336000 0 0 Deletion 25999 LOC_Os02g27540 NB-ARC domain containing protein, expressed FN3126-S Chr2 16310001 16336000 0 0 Deletion 25999 LOC_Os02g27550 hypothetical protein FN3126-S Chr2 16310001 16336000 0 0 Deletion 25999 LOC_Os02g27560 expressed protein FN3126-S Chr2 16310001 16336000 0 0 Deletion 25999 LOC_Os02g27570 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 16310001 16336000 0 0 Deletion 25999 LOC_Os02g27580 hypothetical protein FN3126-S Chr2 1632001 1647000 0 0 Deletion 14999 LOC_Os02g03860 mitochondrial ATP synthase precursor, putative, expressed FN3126-S Chr2 1632001 1647000 0 0 Deletion 14999 LOC_Os02g03870 periplasmic beta-glucosidase precursor, putative, expressed FN3126-S Chr2 1632001 1647000 0 0 Deletion 14999 LOC_Os02g05110 transposon protein, putative, unclassified FN3126-S Chr2 16433820 16433852 0 0 Deletion 32 frameshift_variant HET LOC_Os02g27750 transposon protein, putative, unclassified, expressed FN3126-S Chr2 16836001 16854000 0 0 Deletion 17999 LOC_Os02g28490 expressed protein FN3126-S Chr2 16836001 16854000 0 0 Deletion 17999 LOC_Os02g28840 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 17058001 17079000 0 0 Deletion 20999 LOC_Os02g28850 Kinesin motor domain domain containing protein, expressed FN3126-S Chr2 17058001 17079000 0 0 Deletion 20999 LOC_Os02g28970 expressed protein FN3126-S Chr2 17156001 17190000 0 0 Deletion 33999 LOC_Os02g28990 expressed protein FN3126-S Chr2 17156001 17190000 0 0 Deletion 33999 LOC_Os02g29000 Cupin domain containing protein, expressed FN3126-S Chr2 17156001 17190000 0 0 Deletion 33999 LOC_Os02g29010 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 17156001 17190000 0 0 Deletion 33999 LOC_Os02g29020 Cupin domain containing protein, expressed FN3126-S Chr2 17156001 17190000 0 0 Deletion 33999 LOC_Os02g29030 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 17215001 17228000 0 0 Deletion 12999 LOC_Os02g29080 conserved hypothetical protein FN3126-S Chr2 17215001 17228000 0 0 Deletion 12999 LOC_Os02g29090 expressed protein FN3126-S Chr2 17215001 17228000 0 0 Deletion 12999 LOC_Os02g29230 expressed protein FN3126-S Chr2 17356001 17382000 0 0 Deletion 25999 LOC_Os02g29240 expressed protein FN3126-S Chr2 17356001 17382000 0 0 Deletion 25999 LOC_Os02g29250 expressed protein FN3126-S Chr2 17356001 17382000 0 0 Deletion 25999 LOC_Os02g29650 retrotransposon protein, putative, unclassified FN3126-S Chr2 18858001 18873000 0 0 Deletion 14999 LOC_Os02g31922 expressed protein FN3126-S Chr2 18858001 18873000 0 0 Deletion 14999 LOC_Os02g31924 expressed protein FN3126-S Chr2 18858001 18873000 0 0 Deletion 14999 LOC_Os02g31926 expressed protein FN3126-S Chr2 18858001 18873000 0 0 Deletion 14999 LOC_Os02g31940 potassium transporter, putative, expressed FN3126-S Chr2 18858001 18873000 0 0 Deletion 14999 LOC_Os02g32360 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr2 19110001 19126000 0 0 Deletion 15999 LOC_Os02g32370 inositol hexaphosphate kinase, putative, expressed FN3126-S Chr2 19110001 19126000 0 0 Deletion 15999 LOC_Os02g32760 60S acidic ribosomal protein, putative, expressed FN3126-S Chr2 19455001 19468000 0 0 Deletion 12999 LOC_Os02g32770 cytochrome P450, putative, expressed FN3126-S Chr2 19455001 19468000 0 0 Deletion 12999 LOC_Os02g32780 pentatricopeptide, putative, expressed FN3126-S Chr2 19455001 19468000 0 0 Deletion 12999 LOC_Os02g32870 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 19527001 19566000 0 0 Deletion 38999 LOC_Os02g32880 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr2 19527001 19566000 0 0 Deletion 38999 LOC_Os02g32890 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr2 19527001 19566000 0 0 Deletion 38999 LOC_Os02g32900 expressed protein FN3126-S Chr2 19527001 19566000 0 0 Deletion 38999 LOC_Os02g32910 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 19527001 19566000 0 0 Deletion 38999 LOC_Os02g32920 expressed protein FN3126-S Chr2 19527001 19566000 0 0 Deletion 38999 LOC_Os02g32930 bile acid sodium symporter, putative, expressed FN3126-S Chr2 19527001 19566000 0 0 Deletion 38999 LOC_Os02g32940 expressed protein FN3126-S Chr2 19671001 19678000 0 0 Deletion 6999 FN3126-S Chr2 20411001 20462000 0 0 Deletion 50999 LOC_Os02g34130 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr2 20411001 20462000 0 0 Deletion 50999 LOC_Os02g34140 expressed protein FN3126-S Chr2 20411001 20462000 0 0 Deletion 50999 LOC_Os02g34150 hypothetical protein FN3126-S Chr2 20411001 20462000 0 0 Deletion 50999 LOC_Os02g34160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr2 20411001 20462000 0 0 Deletion 50999 LOC_Os02g34170 transposon protein, putative, unclassified, expressed FN3126-S Chr2 20411001 20462000 0 0 Deletion 50999 LOC_Os02g34180 transposon protein, putative, unclassified, expressed FN3126-S Chr2 20411001 20462000 0 0 Deletion 50999 LOC_Os02g34190 expressed protein FN3126-S Chr2 20411001 20462000 0 0 Deletion 50999 LOC_Os02g34200 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr2 20411001 20462000 0 0 Deletion 50999 LOC_Os02g34310 expressed protein FN3126-S Chr2 20566809 20566809 0 0 Insertion 2 downstream_gene_variant HET FN3126-S Chr2 21200001 21219000 0 0 Deletion 18999 LOC_Os02g35280 retrotransposon protein, putative, unclassified FN3126-S Chr2 21200001 21219000 0 0 Deletion 18999 LOC_Os02g35290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr2 22115001 22140000 0 0 Deletion 24999 LOC_Os02g36640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr2 22115001 22140000 0 0 Deletion 24999 LOC_Os02g36650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr2 22115001 22140000 0 0 Deletion 24999 LOC_Os02g36660 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 22115001 22140000 0 0 Deletion 24999 LOC_Os02g36670 expressed protein FN3126-S Chr2 22297001 22339000 0 0 Deletion 41999 LOC_Os02g36940 uncharacterized Cys-rich domain containing protein, putative, expressed FN3126-S Chr2 22297001 22339000 0 0 Deletion 41999 LOC_Os02g36950 uncharacterized Cys-rich domain containing protein, putative, expressed FN3126-S Chr2 22297001 22339000 0 0 Deletion 41999 LOC_Os02g36960 choline transporter-related, putative, expressed FN3126-S Chr2 22297001 22339000 0 0 Deletion 41999 LOC_Os02g36974 14-3-3 protein, putative, expressed FN3126-S Chr2 22297001 22339000 0 0 Deletion 41999 LOC_Os02g37990 histamine oxidase, putative FN3126-S Chr2 22954001 22977000 0 0 Deletion 22999 LOC_Os02g38000 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 22954001 22977000 0 0 Deletion 22999 LOC_Os02g38010 copper methylamine oxidase precursor, putative, expressed FN3126-S Chr2 22954001 22977000 0 0 Deletion 22999 LOC_Os02g38020 inorganic phosphate transporter 2-1, chloroplast precursor, putative, expressed FN3126-S Chr2 22954001 22977000 0 0 Deletion 22999 LOC_Os02g38029 expressed protein FN3126-S Chr2 22954001 22977000 0 0 Deletion 22999 LOC_Os02g39140 helix-loop-helix DNA-binding domain containing protein, expressed FN3126-S Chr2 23645001 23700000 0 0 Deletion 54999 LOC_Os02g39150 expressed protein FN3126-S Chr2 23645001 23700000 0 0 Deletion 54999 LOC_Os02g39155 expressed protein FN3126-S Chr2 23645001 23700000 0 0 Deletion 54999 LOC_Os02g39160 hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed FN3126-S Chr2 23645001 23700000 0 0 Deletion 54999 LOC_Os02g39170 GDSL-like lipase/acylhydrolase, putative, expressed FN3126-S Chr2 23645001 23700000 0 0 Deletion 54999 LOC_Os02g39180 expressed protein FN3126-S Chr2 23645001 23700000 0 0 Deletion 54999 LOC_Os02g39190 expressed protein FN3126-S Chr2 23645001 23700000 0 0 Deletion 54999 LOC_Os02g39200 nucleotide-sugar transporter family protein, putative, expressed FN3126-S Chr2 23645001 23700000 0 0 Deletion 54999 LOC_Os02g39210 expressed protein FN3126-S Chr2 23645001 23700000 0 0 Deletion 54999 LOC_Os02g39220 transposon protein, putative, unclassified, expressed FN3126-S Chr2 23645001 23700000 0 0 Deletion 54999 LOC_Os02g39230 cyclin-F1-4, putative, expressed FN3126-S Chr2 23922001 23938000 0 0 Deletion 15999 FN3126-S Chr2 2440001 2489000 0 0 Deletion 48999 LOC_Os02g05120 expressed protein FN3126-S Chr2 2440001 2489000 0 0 Deletion 48999 LOC_Os02g05130 expressed protein FN3126-S Chr2 2440001 2489000 0 0 Deletion 48999 LOC_Os02g05140 expressed protein FN3126-S Chr2 2440001 2489000 0 0 Deletion 48999 LOC_Os02g05150 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 2440001 2489000 0 0 Deletion 48999 LOC_Os02g05160 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 2440001 2489000 0 0 Deletion 48999 LOC_Os02g05170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr2 2440001 2489000 0 0 Deletion 48999 LOC_Os02g05180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr2 2440001 2489000 0 0 Deletion 48999 LOC_Os02g05190 expressed protein FN3126-S Chr2 2440001 2489000 0 0 Deletion 48999 LOC_Os02g05199 expressed protein FN3126-S Chr2 2440001 2489000 0 0 Deletion 48999 LOC_Os02g05510 GATA transcription factor 25, putative, expressed FN3126-S Chr2 24462536 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3126-S Chr2 24846001 24862000 0 0 Deletion 15999 LOC_Os02g41720 transposon protein, putative, unclassified, expressed FN3126-S Chr2 25069001 25078000 0 0 Deletion 8999 LOC_Os02g44320 LTPL113 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3126-S Chr2 26809001 26834000 0 0 Deletion 24999 LOC_Os02g44320 LTPL113 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3126-S Chr2 26809001 26834000 0 0 Deletion 24999 LOC_Os02g44330 rho guanine nucleotide exchange factor, putative, expressed FN3126-S Chr2 26809001 26834000 0 0 Deletion 24999 LOC_Os02g44340 expressed protein FN3126-S Chr2 26809001 26834000 0 0 Deletion 24999 LOC_Os02g44350 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 27881001 27911000 0 0 Deletion 29999 LOC_Os02g45780 zinc finger, C3HC4 type domain containing protein, expressed FN3126-S Chr2 27881001 27911000 0 0 Deletion 29999 LOC_Os02g45790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr2 27881001 27911000 0 0 Deletion 29999 LOC_Os02g45800 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 27881001 27911000 0 0 Deletion 29999 LOC_Os02g45810 WD domain, G-beta repeat domain containing protein, expressed FN3126-S Chr2 27881001 27911000 0 0 Deletion 29999 LOC_Os02g45820 mitochondrial import inner membrane translocase subunit Tim, putative, expressed FN3126-S Chr2 2889001 2919000 0 0 Deletion 29999 LOC_Os02g05860 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 2889001 2919000 0 0 Deletion 29999 LOC_Os02g05870 expressed protein FN3126-S Chr2 2889001 2919000 0 0 Deletion 29999 LOC_Os02g05880 RNA polymerase Rpb1, domain 2 family protein, expressed FN3126-S Chr2 2889001 2919000 0 0 Deletion 29999 LOC_Os02g06480 SCO1 protein homolog, mitochondrial precursor, putative, expressed FN3126-S Chr2 28914001 28936000 0 0 Deletion 21999 LOC_Os02g47350 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed FN3126-S Chr2 28914001 28936000 0 0 Deletion 21999 LOC_Os02g47360 PPR repeat domain containing protein, putative, expressed FN3126-S Chr2 28914001 28936000 0 0 Deletion 21999 LOC_Os02g47370 transcription factor TF2, putative, expressed FN3126-S Chr2 28914001 28936000 0 0 Deletion 21999 LOC_Os02g47380 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 28914001 28936000 0 0 Deletion 21999 LOC_Os02g47390 expressed protein FN3126-S Chr2 28914001 28936000 0 0 Deletion 21999 LOC_Os02g47400 pectinacetylesterase domain containing protein, expressed FN3126-S Chr2 29015001 29037000 0 0 Deletion 21999 LOC_Os02g47490 expressed protein FN3126-S Chr2 29015001 29037000 0 0 Deletion 21999 LOC_Os02g47500 nodulin, putative, expressed FN3126-S Chr2 29015001 29037000 0 0 Deletion 21999 LOC_Os02g47510 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed FN3126-S Chr2 29015001 29037000 0 0 Deletion 21999 LOC_Os02g47520 expressed protein FN3126-S Chr2 29015001 29037000 0 0 Deletion 21999 LOC_Os02g47890 expressed protein FN3126-S Chr2 29132868 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3126-S Chr2 29298001 29317000 0 0 Deletion 18999 LOC_Os02g47900 SET domain protein SDG117, putative, expressed FN3126-S Chr2 29298001 29317000 0 0 Deletion 18999 LOC_Os02g47910 hypothetical protein FN3126-S Chr2 29760001 29774000 0 0 Deletion 13999 LOC_Os02g48990 phosphatidylinositol transfer, putative, expressed FN3126-S Chr2 29955001 29976000 0 0 Deletion 20999 LOC_Os02g49010 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr2 29955001 29976000 0 0 Deletion 20999 LOC_Os02g49020 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr2 29955001 29976000 0 0 Deletion 20999 LOC_Os02g49090 WD domain, G-beta repeat domain containing protein, expressed FN3126-S Chr2 30020001 30036000 0 0 Deletion 15999 LOC_Os02g49100 retrotransposon protein, putative, unclassified FN3126-S Chr2 30020001 30036000 0 0 Deletion 15999 LOC_Os02g49110 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 30020001 30036000 0 0 Deletion 15999 LOC_Os02g49120 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 30020001 30036000 0 0 Deletion 15999 LOC_Os02g50430 expressed protein FN3126-S Chr2 30791001 30808000 0 0 Deletion 16999 LOC_Os02g50440 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 30791001 30808000 0 0 Deletion 16999 LOC_Os02g50450 hypothetical protein FN3126-S Chr2 30791001 30808000 0 0 Deletion 16999 LOC_Os02g50460 immediate-early fungal elicitor protein CMPG1, putative, expressed FN3126-S Chr2 30791001 30808000 0 0 Deletion 16999 LOC_Os02g50640 HEAT repeat family protein, putative, expressed FN3126-S Chr2 30941001 30968000 0 0 Deletion 26999 LOC_Os02g50660 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr2 30941001 30968000 0 0 Deletion 26999 LOC_Os02g50670 expressed protein FN3126-S Chr2 30941001 30968000 0 0 Deletion 26999 LOC_Os02g50680 AAA-type ATPase family protein, putative, expressed FN3126-S Chr2 30941001 30968000 0 0 Deletion 26999 LOC_Os02g50690 GDSL-like lipase/acylhydrolase, putative, expressed FN3126-S Chr2 31465001 31477000 0 0 Deletion 11999 LOC_Os02g51390 expressed protein FN3126-S Chr2 31465001 31477000 0 0 Deletion 11999 LOC_Os02g51400 AAA family ATPase, putative, expressed FN3126-S Chr2 31465001 31477000 0 0 Deletion 11999 LOC_Os02g52940 soluble inorganic pyrophosphatase, putative, expressed FN3126-S Chr2 3229001 3248000 0 0 Deletion 18999 LOC_Os02g06470 OsFBX38 - F-box domain containing protein, expressed FN3126-S Chr2 3229001 3248000 0 0 Deletion 18999 LOC_Os02g06480 SCO1 protein homolog, mitochondrial precursor, putative, expressed FN3126-S Chr2 3229001 3248000 0 0 Deletion 18999 LOC_Os02g06490 vacuolar protein sorting-associated protein 4, putative, expressed FN3126-S Chr2 3229001 3248000 0 0 Deletion 18999 LOC_Os02g06500 DSHCT domain containing protein, expressed FN3126-S Chr2 3229001 3248000 0 0 Deletion 18999 LOC_Os02g06592 SNF2 family N-terminal domain containing protein, expressed FN3126-S Chr2 32376001 32390000 0 0 Deletion 13999 LOC_Os02g52940 soluble inorganic pyrophosphatase, putative, expressed FN3126-S Chr2 32376001 32390000 0 0 Deletion 13999 LOC_Os02g52950 expressed protein FN3126-S Chr2 32376001 32390000 0 0 Deletion 13999 LOC_Os02g52960 PHD-finger domain containing protein, putative, expressed FN3126-S Chr2 32376001 32390000 0 0 Deletion 13999 LOC_Os02g53040 STE_MEKK_ste11_MAP3K.11 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed FN3126-S Chr2 32460001 32478000 0 0 Deletion 17999 LOC_Os02g53050 tetratricopeptide-like helical, putative, expressed FN3126-S Chr2 32460001 32478000 0 0 Deletion 17999 LOC_Os02g53060 peptidase, T1 family, putative, expressed FN3126-S Chr2 32460001 32478000 0 0 Deletion 17999 LOC_Os02g53070 HYS1, putative, expressed FN3126-S Chr2 32460001 32478000 0 0 Deletion 17999 LOC_Os02g53080 expressed protein FN3126-S Chr2 32460001 32478000 0 0 Deletion 17999 LOC_Os02g53110 expressed protein FN3126-S Chr2 32501001 32519000 0 0 Deletion 17999 LOC_Os02g53130 nitrate reductase, putative, expressed FN3126-S Chr2 32501001 32519000 0 0 Deletion 17999 LOC_Os02g53770 tRNA synthetase class I, putative, expressed FN3126-S Chr2 32601432 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3126-S Chr2 33018001 33044000 0 0 Deletion 25999 LOC_Os02g53940 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr2 33018001 33044000 0 0 Deletion 25999 LOC_Os02g53950 expressed protein FN3126-S Chr2 33018001 33044000 0 0 Deletion 25999 LOC_Os02g53960 CXE carboxylesterase, putative, expressed FN3126-S Chr2 33018001 33044000 0 0 Deletion 25999 LOC_Os02g54050 ethylene-responsive transcription factor, putative, expressed FN3126-S Chr2 33105001 33126000 0 0 Deletion 20999 LOC_Os02g54060 chaperonin, putative, expressed FN3126-S Chr2 33105001 33126000 0 0 Deletion 20999 LOC_Os02g54080 expressed protein FN3126-S Chr2 33105001 33126000 0 0 Deletion 20999 LOC_Os02g55200 expressed protein FN3126-S Chr2 3360001 3374000 0 0 Deletion 13999 LOC_Os02g06720 WD domain containing protein, putative, expressed FN3126-S Chr2 3360001 3374000 0 0 Deletion 13999 LOC_Os02g07490 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed FN3126-S Chr2 33815001 33826000 0 0 Deletion 10999 LOC_Os02g55210 carboxyl-terminal proteinase, putative, expressed FN3126-S Chr2 33815001 33826000 0 0 Deletion 10999 LOC_Os02g55220 carboxyl-terminal proteinase, putative FN3126-S Chr2 33815001 33826000 0 0 Deletion 10999 LOC_Os02g55230 carboxyl-terminal proteinase, putative, expressed FN3126-S Chr2 33815001 33826000 0 0 Deletion 10999 LOC_Os03g01300 LTPL114 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3126-S Chr2 34790414 C-T 0 0 Single Base Substitution 0 INTRON HET FN3126-S Chr2 3869001 3900000 0 0 Deletion 30999 LOC_Os02g07495 expressed protein FN3126-S Chr2 3869001 3900000 0 0 Deletion 30999 LOC_Os02g07500 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr2 3869001 3900000 0 0 Deletion 30999 LOC_Os02g07510 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr2 3869001 3900000 0 0 Deletion 30999 LOC_Os02g07520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr2 3869001 3900000 0 0 Deletion 30999 LOC_Os02g07530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr2 3869001 3900000 0 0 Deletion 30999 LOC_Os02g12030 receptor-like protein kinase precursor, putative, expressed FN3126-S Chr2 6246001 6266000 0 0 Deletion 19999 LOC_Os02g12040 receptor-like protein kinase precursor, putative, expressed FN3126-S Chr2 6246001 6266000 0 0 Deletion 19999 LOC_Os02g12050 hypothetical protein FN3126-S Chr2 6246001 6266000 0 0 Deletion 19999 LOC_Os02g12060 DEF6 - Defensin and Defensin-like DEFL family, expressed FN3126-S Chr2 6246001 6266000 0 0 Deletion 19999 LOC_Os02g12210 expressed protein FN3126-S Chr2 7802001 7814000 0 0 Deletion 11999 LOC_Os02g14250 transposon protein, putative, unclassified, expressed FN3126-S Chr2 7802001 7814000 0 0 Deletion 11999 LOC_Os02g15070 glutelin, putative, expressed FN3126-S Chr2 8403001 8438000 0 0 Deletion 34999 LOC_Os02g15080 zinc finger, C3HC4 type domain containing protein, expressed FN3126-S Chr2 8403001 8438000 0 0 Deletion 34999 LOC_Os02g15090 glutelin, putative, expressed FN3126-S Chr2 8403001 8438000 0 0 Deletion 34999 LOC_Os02g15100 zinc finger, C3HC4 type domain containing protein, expressed FN3126-S Chr2 8403001 8438000 0 0 Deletion 34999 LOC_Os02g15110 zinc finger, C3HC4 type domain containing protein, expressed FN3126-S Chr2 8403001 8438000 0 0 Deletion 34999 LOC_Os02g15120 RING-H2 finger protein, putative, expressed FN3126-S Chr2 8403001 8438000 0 0 Deletion 34999 LOC_Os02g15130 expressed protein FN3126-S Chr2 8403001 8438000 0 0 Deletion 34999 LOC_Os02g15140 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr2 9572001 9590000 0 0 Deletion 17999 LOC_Os02g16809 expansin precursor, putative, expressed FN3126-S Chr2 9572001 9590000 0 0 Deletion 17999 LOC_Os02g16820 glutelin, putative, expressed FN3126-S Chr2 9572001 9590000 0 0 Deletion 17999 LOC_Os02g16830 glutelin, putative, expressed FN3126-S Chr2 9572001 9590000 0 0 Deletion 17999 LOC_Os02g16839 expansin precursor, putative, expressed FN3126-S Chr2 9572001 9590000 0 0 Deletion 17999 LOC_Os02g17640 isochorismatase family protein, putative, expressed FN3126-S Chr3 10867001 10899000 0 0 Deletion 31999 LOC_Os03g19350 OsLonP1 - Putative Lon protease homologue, expressed FN3126-S Chr3 10867001 10899000 0 0 Deletion 31999 LOC_Os03g19400 expressed protein FN3126-S Chr3 10916001 10929000 0 0 Deletion 12999 LOC_Os03g19410 OsPOP7 - Putative Prolyl Oligopeptidase homologue, expressed FN3126-S Chr3 10916001 10929000 0 0 Deletion 12999 LOC_Os03g19420 nicotianamine synthase, putative, expressed FN3126-S Chr3 10916001 10929000 0 0 Deletion 12999 LOC_Os03g19740 expressed protein FN3126-S Chr3 11101001 11126000 0 0 Deletion 24999 LOC_Os03g19760 HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed FN3126-S Chr3 11101001 11126000 0 0 Deletion 24999 LOC_Os03g20100 S1 RNA binding domain containing protein, expressed FN3126-S Chr3 11330001 11354000 0 0 Deletion 23999 LOC_Os03g20190 pentatricopeptide, putative, expressed FN3126-S Chr3 11411001 11435000 0 0 Deletion 23999 LOC_Os03g20200 transposon protein, putative, Mutator sub-class, expressed FN3126-S Chr3 11411001 11435000 0 0 Deletion 23999 LOC_Os03g20210 aspartic proteinase nepenthesin precursor, putative, expressed FN3126-S Chr3 11411001 11435000 0 0 Deletion 23999 LOC_Os03g20220 expressed protein FN3126-S Chr3 11411001 11435000 0 0 Deletion 23999 LOC_Os03g20230 aspartic proteinase nepenthesin-1 precursor, putative, expressed FN3126-S Chr3 11411001 11435000 0 0 Deletion 23999 LOC_Os03g20240 expressed protein FN3126-S Chr3 11411001 11435000 0 0 Deletion 23999 LOC_Os03g20410 aquaporin SIP2-1, putative, expressed FN3126-S Chr3 11710311 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3126-S Chr3 12005001 12016000 0 0 Deletion 10999 LOC_Os03g21090 auxin-independent growth promoter protein, putative, expressed FN3126-S Chr3 12005001 12016000 0 0 Deletion 10999 LOC_Os03g21100 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr3 12005001 12016000 0 0 Deletion 10999 LOC_Os03g21279 expressed protein FN3126-S Chr3 12163001 12189000 0 0 Deletion 25999 LOC_Os03g21279 expressed protein FN3126-S Chr3 12163001 12189000 0 0 Deletion 25999 LOC_Os03g21290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 12163001 12189000 0 0 Deletion 25999 LOC_Os03g21300 expressed protein FN3126-S Chr3 12871001 12889000 0 0 Deletion 17999 LOC_Os03g22470 desiccation-related protein PCC13-62 precursor, putative, expressed FN3126-S Chr3 12871001 12889000 0 0 Deletion 17999 LOC_Os03g22480 transposon protein, putative, unclassified, expressed FN3126-S Chr3 12871001 12889000 0 0 Deletion 17999 LOC_Os03g22570 MIF4G domain containing protein, putative, expressed FN3126-S Chr3 12970001 13005000 0 0 Deletion 34999 LOC_Os03g22570 MIF4G domain containing protein, putative, expressed FN3126-S Chr3 12970001 13005000 0 0 Deletion 34999 LOC_Os03g22580 CW-type Zinc Finger, putative, expressed FN3126-S Chr3 12970001 13005000 0 0 Deletion 34999 LOC_Os03g22590 nodulin MtN3 family protein, putative, expressed FN3126-S Chr3 1364001 1391000 0 0 Deletion 26999 LOC_Os03g03220 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 1364001 1391000 0 0 Deletion 26999 LOC_Os03g03230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 1364001 1391000 0 0 Deletion 26999 LOC_Os03g03240 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 1364001 1391000 0 0 Deletion 26999 LOC_Os03g03250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 14394001 14419000 0 0 Deletion 24999 LOC_Os03g25190 OsFBX87 - F-box domain containing protein, expressed FN3126-S Chr3 14394001 14419000 0 0 Deletion 24999 LOC_Os03g25200 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr3 14394001 14419000 0 0 Deletion 24999 LOC_Os03g25210 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr3 14394001 14419000 0 0 Deletion 24999 LOC_Os03g25220 OsFBX88 - F-box domain containing protein, expressed FN3126-S Chr3 14394001 14419000 0 0 Deletion 24999 LOC_Os03g25340 peroxidase precursor, putative, expressed FN3126-S Chr3 14478001 14501000 0 0 Deletion 22999 LOC_Os03g25340 peroxidase precursor, putative, expressed FN3126-S Chr3 14478001 14501000 0 0 Deletion 22999 LOC_Os03g25350 LTPL36 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3126-S Chr3 14478001 14501000 0 0 Deletion 22999 LOC_Os03g25360 peroxidase precursor, putative, expressed FN3126-S Chr3 15341001 15358000 0 0 Deletion 16999 LOC_Os03g26880 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 15341001 15358000 0 0 Deletion 16999 LOC_Os03g26890 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 15341001 15358000 0 0 Deletion 16999 LOC_Os03g26900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 15565001 15578000 0 0 Deletion 12999 LOC_Os03g27560 expressed protein FN3126-S Chr3 16217001 16235000 0 0 Deletion 17999 LOC_Os03g28180 expressed protein FN3126-S Chr3 16217001 16235000 0 0 Deletion 17999 LOC_Os03g28190 dirigent, putative, expressed FN3126-S Chr3 16217001 16235000 0 0 Deletion 17999 LOC_Os03g28204 transposon protein, putative, unclassified, expressed FN3126-S Chr3 16217001 16235000 0 0 Deletion 17999 LOC_Os03g29220 retrotransposon protein, putative, LINE subclass, expressed FN3126-S Chr3 16611001 16621000 0 0 Deletion 9999 LOC_Os03g29222 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 16611001 16621000 0 0 Deletion 9999 LOC_Os03g29360 expressed protein FN3126-S Chr3 16713001 16725000 0 0 Deletion 11999 LOC_Os03g29370 hypothetical protein FN3126-S Chr3 16713001 16725000 0 0 Deletion 11999 LOC_Os03g29650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 16896001 16915000 0 0 Deletion 18999 LOC_Os03g29660 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 16896001 16915000 0 0 Deletion 18999 LOC_Os03g29940 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 17061001 17078000 0 0 Deletion 16999 LOC_Os03g29950 glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed FN3126-S Chr3 17061001 17078000 0 0 Deletion 16999 LOC_Os03g29960 DEK C terminal domain containing protein, expressed FN3126-S Chr3 17061001 17078000 0 0 Deletion 16999 LOC_Os03g30060 expressed protein FN3126-S Chr3 17144001 17172000 0 0 Deletion 27999 LOC_Os03g30070 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr3 17144001 17172000 0 0 Deletion 27999 LOC_Os03g30080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr3 17144001 17172000 0 0 Deletion 27999 LOC_Os03g30084 expressed protein FN3126-S Chr3 17144001 17172000 0 0 Deletion 27999 LOC_Os03g30088 retrotransposon protein, putative, unclassified FN3126-S Chr3 17314001 17328000 0 0 Deletion 13999 LOC_Os03g30370 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr3 17314001 17328000 0 0 Deletion 13999 LOC_Os03g30390 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr3 17314001 17328000 0 0 Deletion 13999 LOC_Os03g31320 RING zinc finger protein-like, putative, expressed FN3126-S Chr3 18040001 18084000 0 0 Deletion 43999 LOC_Os03g31620 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr3 18040001 18084000 0 0 Deletion 43999 LOC_Os03g31630 OsSub29 - Putative Subtilisin homologue, expressed FN3126-S Chr3 18040001 18084000 0 0 Deletion 43999 LOC_Os03g31634 expressed protein FN3126-S Chr3 18040001 18084000 0 0 Deletion 43999 LOC_Os03g31640 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 18040001 18084000 0 0 Deletion 43999 LOC_Os03g31650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 18040001 18084000 0 0 Deletion 43999 LOC_Os03g31660 transposon protein, putative, unclassified, expressed FN3126-S Chr3 18040001 18084000 0 0 Deletion 43999 LOC_Os03g31670 hypothetical protein FN3126-S Chr3 1866001 1902000 0 0 Deletion 35999 LOC_Os03g04080 expressed protein FN3126-S Chr3 1866001 1902000 0 0 Deletion 35999 LOC_Os03g04100 expressed protein FN3126-S Chr3 1866001 1902000 0 0 Deletion 35999 LOC_Os03g04110 lysM domain-containing GPI-anchored protein precursor, putative, expressed FN3126-S Chr3 1866001 1902000 0 0 Deletion 35999 LOC_Os03g04120 AMP-binding enzyme, putative, expressed FN3126-S Chr3 1866001 1902000 0 0 Deletion 35999 LOC_Os03g04130 AMP-binding domain containing protein, expressed FN3126-S Chr3 1866001 1902000 0 0 Deletion 35999 LOC_Os03g04140 serine acetyltransferase protein, putative, expressed FN3126-S Chr3 1866001 1902000 0 0 Deletion 35999 LOC_Os03g04150 transposon protein, putative, Mutator sub-class, expressed FN3126-S Chr3 18877001 18891000 0 0 Deletion 13999 LOC_Os03g33230 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 19000001 19025000 0 0 Deletion 24999 LOC_Os03g33230 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 19000001 19025000 0 0 Deletion 24999 LOC_Os03g33240 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 19000001 19025000 0 0 Deletion 24999 LOC_Os03g33250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 19027001 19045000 0 0 Deletion 17999 LOC_Os03g33270 retrotransposon protein, putative, unclassified FN3126-S Chr3 19027001 19045000 0 0 Deletion 17999 LOC_Os03g33280 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 19027001 19045000 0 0 Deletion 17999 LOC_Os03g33290 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 19027001 19045000 0 0 Deletion 17999 LOC_Os03g33300 retrotransposon, putative, centromere-specific, expressed FN3126-S Chr3 19027001 19045000 0 0 Deletion 17999 LOC_Os03g33580 mitotic checkpoint protein, putative, expressed FN3126-S Chr3 19156656 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g33530 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 19179001 19195000 0 0 Deletion 15999 LOC_Os03g33640 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr3 19222001 19234000 0 0 Deletion 11999 LOC_Os03g33828 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 19331001 19350000 0 0 Deletion 18999 LOC_Os03g33837 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 19331001 19350000 0 0 Deletion 18999 LOC_Os03g33850 retrotransposon protein, putative, Ty1-copia subclass FN3126-S Chr3 19331001 19350000 0 0 Deletion 18999 LOC_Os03g33860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 19331001 19350000 0 0 Deletion 18999 LOC_Os03g33870 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 19331001 19350000 0 0 Deletion 18999 LOC_Os03g33880 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 19331001 19350000 0 0 Deletion 18999 LOC_Os03g35430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 19648001 19664000 0 0 Deletion 15999 LOC_Os03g35454 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 19648001 19664000 0 0 Deletion 15999 LOC_Os03g36060 hypothetical protein FN3126-S Chr3 20002001 20019000 0 0 Deletion 16999 LOC_Os03g36060 hypothetical protein FN3126-S Chr3 20002001 20019000 0 0 Deletion 16999 LOC_Os03g36070 retrotransposon protein, putative, unclassified FN3126-S Chr3 20002001 20019000 0 0 Deletion 16999 LOC_Os03g36080 expressed protein FN3126-S Chr3 20097423 20097424 0 0 Deletion 1 frameshift_variant HET LOC_Os03g36239 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 20103001 20148000 0 0 Deletion 44999 LOC_Os03g36239 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 20103001 20148000 0 0 Deletion 44999 LOC_Os03g36260 expressed protein FN3126-S Chr3 20103001 20148000 0 0 Deletion 44999 LOC_Os03g36270 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 20103001 20148000 0 0 Deletion 44999 LOC_Os03g36279 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 20103001 20148000 0 0 Deletion 44999 LOC_Os03g36290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 20103001 20148000 0 0 Deletion 44999 LOC_Os03g36300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 20103001 20148000 0 0 Deletion 44999 LOC_Os03g36310 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 20103001 20148000 0 0 Deletion 44999 LOC_Os03g36320 expressed protein FN3126-S Chr3 20344001 20370000 0 0 Deletion 25999 LOC_Os03g36700 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 20344001 20370000 0 0 Deletion 25999 LOC_Os03g36710 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 20344001 20370000 0 0 Deletion 25999 LOC_Os03g36720 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr3 20344001 20370000 0 0 Deletion 25999 LOC_Os03g36730 OST3/OST6 family protein, putative, expressed FN3126-S Chr3 20344001 20370000 0 0 Deletion 25999 LOC_Os03g36760 expressed protein FN3126-S Chr3 20392001 20408000 0 0 Deletion 15999 LOC_Os03g36770 expressed protein FN3126-S Chr3 20392001 20408000 0 0 Deletion 15999 LOC_Os03g36780 elongation factor, putative, expressed FN3126-S Chr3 20392001 20408000 0 0 Deletion 15999 LOC_Os03g37340 expressed protein FN3126-S Chr3 20696001 20737000 0 0 Deletion 40999 LOC_Os03g37350 transposon protein, putative, Pong sub-class FN3126-S Chr3 20696001 20737000 0 0 Deletion 40999 LOC_Os03g37360 expressed protein FN3126-S Chr3 20696001 20737000 0 0 Deletion 40999 LOC_Os03g37377 retrotransposon protein, putative, unclassified FN3126-S Chr3 20696001 20737000 0 0 Deletion 40999 LOC_Os03g37394 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 20696001 20737000 0 0 Deletion 40999 LOC_Os03g37411 MATE efflux family protein, putative, expressed FN3126-S Chr3 20976001 20993000 0 0 Deletion 16999 LOC_Os03g37900 scarecrow transcription factor family protein, putative FN3126-S Chr3 210001 225000 0 0 Deletion 14999 LOC_Os03g01320 LTPL116 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3126-S Chr3 210001 225000 0 0 Deletion 14999 LOC_Os03g03210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 21047001 21062000 0 0 Deletion 14999 LOC_Os03g37915 expressed protein FN3126-S Chr3 21047001 21062000 0 0 Deletion 14999 LOC_Os03g37920 transposon protein, putative, unclassified, expressed FN3126-S Chr3 21047001 21062000 0 0 Deletion 14999 LOC_Os03g37930 potassium transporter, putative, expressed FN3126-S Chr3 21047001 21062000 0 0 Deletion 14999 LOC_Os03g38070 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 21128001 21142000 0 0 Deletion 13999 LOC_Os03g38070 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 21128001 21142000 0 0 Deletion 13999 LOC_Os03g38076 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 21128001 21142000 0 0 Deletion 13999 LOC_Os03g38082 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr3 21233001 21269000 0 0 Deletion 35999 LOC_Os03g38260 60S ribosomal protein L19-3, putative, expressed FN3126-S Chr3 21233001 21269000 0 0 Deletion 35999 LOC_Os03g38270 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 21233001 21269000 0 0 Deletion 35999 LOC_Os03g38284 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 21233001 21269000 0 0 Deletion 35999 LOC_Os03g38300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 21233001 21269000 0 0 Deletion 35999 LOC_Os03g38310 retrotransposon protein, putative, unclassified FN3126-S Chr3 21233001 21269000 0 0 Deletion 35999 LOC_Os03g38320 expressed protein FN3126-S Chr3 21233001 21269000 0 0 Deletion 35999 LOC_Os03g38330 disease resistance RPP13-like protein 1, putative, expressed FN3126-S Chr3 21233001 21269000 0 0 Deletion 35999 LOC_Os03g38620 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 21431001 21452000 0 0 Deletion 20999 LOC_Os03g38710 protein kinase, putative, expressed FN3126-S Chr3 21484001 21531000 0 0 Deletion 46999 LOC_Os03g38710 protein kinase, putative, expressed FN3126-S Chr3 21484001 21531000 0 0 Deletion 46999 LOC_Os03g38720 proteasome maturation factor UMP1 family protein, expressed FN3126-S Chr3 21484001 21531000 0 0 Deletion 46999 LOC_Os03g38730 peroxisomal membrane protein, putative, expressed FN3126-S Chr3 21484001 21531000 0 0 Deletion 46999 LOC_Os03g38740 Dicer, putative, expressed FN3126-S Chr3 21484001 21531000 0 0 Deletion 46999 LOC_Os03g38745 serine/arginine repetitive matrix protein 1, putative, expressed FN3126-S Chr3 21484001 21531000 0 0 Deletion 46999 LOC_Os03g38750 expressed protein FN3126-S Chr3 21484001 21531000 0 0 Deletion 46999 LOC_Os03g38764 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 21927001 21951000 0 0 Deletion 23999 LOC_Os03g39490 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr3 21927001 21951000 0 0 Deletion 23999 LOC_Os03g39500 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 21927001 21951000 0 0 Deletion 23999 LOC_Os03g39510 expressed protein FN3126-S Chr3 21927001 21951000 0 0 Deletion 23999 LOC_Os03g39520 plant protein of unknown function domain containing protein, expressed FN3126-S Chr3 21927001 21951000 0 0 Deletion 23999 LOC_Os03g39640 CBS domain containing protein, expressed FN3126-S Chr3 22029001 22044000 0 0 Deletion 14999 LOC_Os03g40194 disease resistance RPP13-like protein 1, putative, expressed FN3126-S Chr3 22350001 22376000 0 0 Deletion 25999 LOC_Os03g40210 expressed protein FN3126-S Chr3 22350001 22376000 0 0 Deletion 25999 LOC_Os03g40220 retrotransposon protein, putative, unclassified FN3126-S Chr3 22350001 22376000 0 0 Deletion 25999 LOC_Os03g40230 expressed protein FN3126-S Chr3 22350001 22376000 0 0 Deletion 25999 LOC_Os03g40240 hypothetical protein FN3126-S Chr3 22350001 22376000 0 0 Deletion 25999 LOC_Os03g40250 Leucine Rich Repeat family protein, expressed FN3126-S Chr3 22350001 22376000 0 0 Deletion 25999 LOC_Os03g40260 Regulator of chromosome condensation domain containing protein, expressed FN3126-S Chr3 22582001 22596000 0 0 Deletion 13999 LOC_Os03g40650 bromodomain associated family protein, expressed FN3126-S Chr3 22582001 22596000 0 0 Deletion 13999 LOC_Os03g40870 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 22723001 22755000 0 0 Deletion 31999 LOC_Os03g40870 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 22723001 22755000 0 0 Deletion 31999 LOC_Os03g40880 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 22723001 22755000 0 0 Deletion 31999 LOC_Os03g40900 expressed protein FN3126-S Chr3 22723001 22755000 0 0 Deletion 31999 LOC_Os03g40910 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 22723001 22755000 0 0 Deletion 31999 LOC_Os03g40920 expressed protein FN3126-S Chr3 22723001 22755000 0 0 Deletion 31999 LOC_Os03g40930 expressed protein FN3126-S Chr3 22813473 22813478 0 0 Deletion 5 INTERGENIC HET FN3126-S Chr3 23153001 23167000 0 0 Deletion 13999 LOC_Os03g41662 expressed protein FN3126-S Chr3 23153001 23167000 0 0 Deletion 13999 LOC_Os03g41675 expressed protein FN3126-S Chr3 23153001 23167000 0 0 Deletion 13999 LOC_Os03g41690 expressed protein FN3126-S Chr3 23153001 23167000 0 0 Deletion 13999 LOC_Os03g41960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 23303001 23327000 0 0 Deletion 23999 LOC_Os03g41970 retrotransposon protein, putative, unclassified FN3126-S Chr3 23303001 23327000 0 0 Deletion 23999 LOC_Os03g41980 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 23303001 23327000 0 0 Deletion 23999 LOC_Os03g41990 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 23948001 23964000 0 0 Deletion 15999 LOC_Os03g42950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 23948001 23964000 0 0 Deletion 15999 LOC_Os03g42954 conserved hypothetical protein FN3126-S Chr3 23948001 23964000 0 0 Deletion 15999 LOC_Os03g42960 expressed protein FN3126-S Chr3 23948001 23964000 0 0 Deletion 15999 LOC_Os03g42970 transposon protein, putative, unclassified, expressed FN3126-S Chr3 24082001 24112000 0 0 Deletion 29999 LOC_Os03g43169 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr3 24082001 24112000 0 0 Deletion 29999 LOC_Os03g43180 transposon protein, putative, unclassified, expressed FN3126-S Chr3 24082001 24112000 0 0 Deletion 29999 LOC_Os03g43190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 24082001 24112000 0 0 Deletion 29999 LOC_Os03g43200 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 24082001 24112000 0 0 Deletion 29999 LOC_Os03g43210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 24082001 24112000 0 0 Deletion 29999 LOC_Os03g43220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 24082001 24112000 0 0 Deletion 29999 LOC_Os03g43230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 24082001 24112000 0 0 Deletion 29999 LOC_Os03g43235 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 24082001 24112000 0 0 Deletion 29999 LOC_Os03g43240 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr3 24489001 24503000 0 0 Deletion 13999 LOC_Os03g43779 expressed protein FN3126-S Chr3 24489001 24503000 0 0 Deletion 13999 LOC_Os03g43820 plant invertase/pectin methylesterase inhibitor domain containing protein, expressed FN3126-S Chr3 24560001 24579000 0 0 Deletion 18999 LOC_Os03g43830 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 24560001 24579000 0 0 Deletion 18999 LOC_Os03g43840 LSD1 zinc finger domain containing protein, expressed FN3126-S Chr3 24560001 24579000 0 0 Deletion 18999 LOC_Os03g46270 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr3 26159001 26182000 0 0 Deletion 22999 LOC_Os03g46280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr3 26159001 26182000 0 0 Deletion 22999 LOC_Os03g46630 retrotransposon protein, putative, Ty1-copia subclass FN3126-S Chr3 26390001 26405000 0 0 Deletion 14999 LOC_Os03g46640 deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed FN3126-S Chr3 26390001 26405000 0 0 Deletion 14999 LOC_Os03g46650 WD domain, G-beta repeat domain containing protein, expressed FN3126-S Chr3 26390001 26405000 0 0 Deletion 14999 LOC_Os03g47120 CBS domain containing protein, expressed FN3126-S Chr3 26657001 26671000 0 0 Deletion 13999 LOC_Os03g47130 transposon protein, putative, unclassified, expressed FN3126-S Chr3 26657001 26671000 0 0 Deletion 13999 LOC_Os03g47620 ankyrin, putative, expressed FN3126-S Chr3 27662001 27681000 0 0 Deletion 18999 LOC_Os03g48540 expressed protein FN3126-S Chr3 27662001 27681000 0 0 Deletion 18999 LOC_Os03g48550 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr3 27662001 27681000 0 0 Deletion 18999 LOC_Os03g48560 N-acetylglucosaminyltransferase, putative, expressed FN3126-S Chr3 2776482 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3126-S Chr3 27974001 27991000 0 0 Deletion 16999 LOC_Os03g49120 transposon protein, putative, unclassified, expressed FN3126-S Chr3 27974001 27991000 0 0 Deletion 16999 LOC_Os03g49126 expressed protein FN3126-S Chr3 27974001 27991000 0 0 Deletion 16999 LOC_Os03g49132 ZOS3-16 - C2H2 zinc finger protein, expressed FN3126-S Chr3 27974001 27991000 0 0 Deletion 16999 LOC_Os03g49140 ABC1 protein At2g40090 precursor, putative, expressed FN3126-S Chr3 27974001 27991000 0 0 Deletion 16999 LOC_Os03g49210 BRCA1 C Terminus domain containing protein, expressed FN3126-S Chr3 28043001 28060000 0 0 Deletion 16999 LOC_Os03g49250 OsFBO16 - F-box and other domain containing protein, expressed FN3126-S Chr3 28043001 28060000 0 0 Deletion 16999 LOC_Os03g49260 lipoxygenase, putative, expressed FN3126-S Chr3 28043001 28060000 0 0 Deletion 16999 LOC_Os03g49270 THION36 - Plant thionin family protein precursor, expressed FN3126-S Chr3 28043001 28060000 0 0 Deletion 16999 LOC_Os03g49280 THION37 - Plant thionin family protein precursor, putative, expressed FN3126-S Chr3 28043001 28060000 0 0 Deletion 16999 LOC_Os03g49560 expressed protein FN3126-S Chr3 28225001 28247000 0 0 Deletion 21999 LOC_Os03g49570 domain of unknown function, DUF250 domain containing protein, expressed FN3126-S Chr3 28225001 28247000 0 0 Deletion 21999 LOC_Os03g49580 eukaryotic peptide chain release factor subunit 1-1, putative, expressed FN3126-S Chr3 28225001 28247000 0 0 Deletion 21999 LOC_Os03g49590 expressed protein FN3126-S Chr3 28225001 28247000 0 0 Deletion 21999 LOC_Os03g49600 Os3bglu7 - beta-glucosidase, exo-beta-glucanse, expressed FN3126-S Chr3 28225001 28247000 0 0 Deletion 21999 LOC_Os03g49630 expressed protein FN3126-S Chr3 28265001 28281000 0 0 Deletion 15999 LOC_Os03g49640 STE_MEKK_ste11_MAP3K.14 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed FN3126-S Chr3 28265001 28281000 0 0 Deletion 15999 LOC_Os03g49650 retrotransposon protein, putative, Ty1-copia subclass FN3126-S Chr3 28265001 28281000 0 0 Deletion 15999 LOC_Os03g49660 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr3 2890001 2904000 0 0 Deletion 13999 LOC_Os03g05800 expressed protein FN3126-S Chr3 2890001 2904000 0 0 Deletion 13999 LOC_Os03g05806 pseudouridine synthase family protein, putative, expressed FN3126-S Chr3 2890001 2904000 0 0 Deletion 13999 LOC_Os03g07630 retrotransposon protein, putative, unclassified FN3126-S Chr3 29247001 29272000 0 0 Deletion 24999 LOC_Os03g51550 WD repeat-containing protein 5, putative, expressed FN3126-S Chr3 29489001 29511000 0 0 Deletion 21999 LOC_Os03g51556 hypothetical protein FN3126-S Chr3 29489001 29511000 0 0 Deletion 21999 LOC_Os03g52475 pentatricopeptide, putative, expressed FN3126-S Chr3 30785001 30802000 0 0 Deletion 16999 LOC_Os03g53690 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed FN3126-S Chr3 30785001 30802000 0 0 Deletion 16999 LOC_Os03g53700 PHD-finger domain containing protein, putative, expressed FN3126-S Chr3 30785001 30802000 0 0 Deletion 16999 LOC_Os03g53710 aldose 1-epimerase, putative, expressed FN3126-S Chr3 30955001 30968000 0 0 Deletion 12999 LOC_Os03g54000 oligopeptide transporter, putative, expressed FN3126-S Chr3 30955001 30968000 0 0 Deletion 12999 LOC_Os03g54010 retrotransposon protein, putative, unclassified FN3126-S Chr3 30955001 30968000 0 0 Deletion 12999 LOC_Os03g54020 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr3 30955001 30968000 0 0 Deletion 12999 LOC_Os03g56560 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 32218001 32232000 0 0 Deletion 13999 LOC_Os03g56560 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 32218001 32232000 0 0 Deletion 13999 LOC_Os03g56566 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 32218001 32232000 0 0 Deletion 13999 LOC_Os03g56572 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr3 33890001 33905000 0 0 Deletion 14999 LOC_Os03g59540 zinc finger, C3HC4 type domain containing protein, expressed FN3126-S Chr3 33890001 33905000 0 0 Deletion 14999 LOC_Os03g59550 RNA recognition motif containing protein, putative, expressed FN3126-S Chr3 33890001 33905000 0 0 Deletion 14999 LOC_Os03g59560 hypothetical protein FN3126-S Chr3 33890001 33905000 0 0 Deletion 14999 LOC_Os03g60140 U-box domain-containing protein, putative, expressed FN3126-S Chr3 34362001 34384000 0 0 Deletion 21999 LOC_Os03g60440 expressed protein FN3126-S Chr3 34362001 34384000 0 0 Deletion 21999 LOC_Os03g60449 hypothetical protein FN3126-S Chr3 34362001 34384000 0 0 Deletion 21999 LOC_Os03g60460 aminopeptidase, putative, expressed FN3126-S Chr3 34362001 34384000 0 0 Deletion 21999 LOC_Os03g60470 glycine-rich protein A3, putative, expressed FN3126-S Chr3 34362001 34384000 0 0 Deletion 21999 LOC_Os03g60670 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 34490001 34534000 0 0 Deletion 43999 LOC_Os03g60670 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 34490001 34534000 0 0 Deletion 43999 LOC_Os03g60690 pentatricopeptide, putative, expressed FN3126-S Chr3 34490001 34534000 0 0 Deletion 43999 LOC_Os03g60700 dolichyl-phosphate beta-glycosyltransferase, putative, expressed FN3126-S Chr3 34490001 34534000 0 0 Deletion 43999 LOC_Os03g60710 protein kinase domain containing protein, expressed FN3126-S Chr3 34490001 34534000 0 0 Deletion 43999 LOC_Os03g60720 expansin precursor, putative, expressed FN3126-S Chr3 34490001 34534000 0 0 Deletion 43999 LOC_Os03g60730 transposon protein, putative, unclassified, expressed FN3126-S Chr3 34490001 34534000 0 0 Deletion 43999 LOC_Os03g60740 expressed protein FN3126-S Chr3 34490001 34534000 0 0 Deletion 43999 LOC_Os03g60750 ribosomal RNA large subunit methyltransferase J, putative, expressed FN3126-S Chr3 34490001 34534000 0 0 Deletion 43999 LOC_Os03g60760 expressed protein FN3126-S Chr3 34678001 34702000 0 0 Deletion 23999 LOC_Os03g61050 FG-GAP repeat-containing protein, putative, expressed FN3126-S Chr3 34678001 34702000 0 0 Deletion 23999 LOC_Os03g61060 protein kinase domain containing protein, expressed FN3126-S Chr3 34678001 34702000 0 0 Deletion 23999 LOC_Os03g61070 expressed protein FN3126-S Chr3 34678001 34702000 0 0 Deletion 23999 LOC_Os03g61080 expressed protein FN3126-S Chr3 35103507 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN3126-S Chr3 35328950 35329042 0 0 Deletion 92 upstream_gene_variant HET FN3126-S Chr3 36046001 36063000 0 0 Deletion 16999 LOC_Os03g63830 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 36046001 36063000 0 0 Deletion 16999 LOC_Os04g01180 retrotransposon protein, putative, LINE subclass, expressed FN3126-S Chr3 3875001 3887000 0 0 Deletion 11999 LOC_Os03g07640 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr3 3875001 3887000 0 0 Deletion 11999 LOC_Os03g08114 expressed protein FN3126-S Chr3 4143001 4162000 0 0 Deletion 18999 LOC_Os03g08120 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr3 4143001 4162000 0 0 Deletion 18999 LOC_Os03g08130 expressed protein FN3126-S Chr3 4143001 4162000 0 0 Deletion 18999 LOC_Os03g08140 tubulin--tyrosine ligase-like protein 12, putative, expressed FN3126-S Chr3 4143001 4162000 0 0 Deletion 18999 LOC_Os03g08150 Cupin domain containing protein, expressed FN3126-S Chr3 4143001 4162000 0 0 Deletion 18999 LOC_Os03g09830 expressed protein FN3126-S Chr3 4890001 4914000 0 0 Deletion 23999 LOC_Os03g09840 C2 domain containing protein, putative, expressed FN3126-S Chr3 4890001 4914000 0 0 Deletion 23999 LOC_Os03g09850 auxin-responsive protein-related, putative, expressed FN3126-S Chr3 4890001 4914000 0 0 Deletion 23999 LOC_Os03g09860 acetyltransferase, GNAT family, putative, expressed FN3126-S Chr3 4890001 4914000 0 0 Deletion 23999 LOC_Os03g09870 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed FN3126-S Chr3 4890001 4914000 0 0 Deletion 23999 LOC_Os03g09880 AIR12, putative, expressed FN3126-S Chr3 4890001 4914000 0 0 Deletion 23999 LOC_Os03g09910 aminotransferase, classes I and II, domain containing protein, expressed FN3126-S Chr3 4931001 4947000 0 0 Deletion 15999 LOC_Os03g09920 RNase L inhibitor protein-related, putative, expressed FN3126-S Chr3 4931001 4947000 0 0 Deletion 15999 LOC_Os03g09930 sulfate transporter, putative, expressed FN3126-S Chr3 4931001 4947000 0 0 Deletion 15999 LOC_Os03g11460 expressed protein FN3126-S Chr3 5912001 5932000 0 0 Deletion 19999 LOC_Os03g11470 DEAD/DEAH box helicase domain containing protein, expressed FN3126-S Chr3 5912001 5932000 0 0 Deletion 19999 LOC_Os03g11500 DUF647 domain containing protein, putative, expressed FN3126-S Chr3 5956001 5975000 0 0 Deletion 18999 LOC_Os03g11510 mitochondrial carrier protein, putative, expressed FN3126-S Chr3 5956001 5975000 0 0 Deletion 18999 LOC_Os03g11520 expressed protein FN3126-S Chr3 5956001 5975000 0 0 Deletion 18999 LOC_Os03g11530 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed FN3126-S Chr3 5956001 5975000 0 0 Deletion 18999 LOC_Os03g11970 tubulin/FtsZ domain containing protein, putative, expressed FN3126-S Chr3 7491001 7515000 0 0 Deletion 23999 LOC_Os03g13830 pentatricopeptide, putative, expressed FN3126-S Chr3 7491001 7515000 0 0 Deletion 23999 LOC_Os03g13840 senescence-associated protein, putative, expressed FN3126-S Chr3 7491001 7515000 0 0 Deletion 23999 LOC_Os03g13850 cell cycle checkpoint protein RAD17, putative, expressed FN3126-S Chr3 7491001 7515000 0 0 Deletion 23999 LOC_Os03g13860 ras-related protein, putative, expressed FN3126-S Chr3 7838001 7872000 0 0 Deletion 33999 LOC_Os03g14420 cytochrome P450, putative, expressed FN3126-S Chr3 7838001 7872000 0 0 Deletion 33999 LOC_Os03g14430 expressed protein FN3126-S Chr3 7838001 7872000 0 0 Deletion 33999 LOC_Os03g14440 expressed protein FN3126-S Chr3 7838001 7872000 0 0 Deletion 33999 LOC_Os03g14450 enolase, putative, expressed FN3126-S Chr3 7838001 7872000 0 0 Deletion 33999 LOC_Os03g14460 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr3 7838001 7872000 0 0 Deletion 33999 LOC_Os03g14470 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr3 7838001 7872000 0 0 Deletion 33999 LOC_Os03g14480 hypothetical protein FN3126-S Chr3 7838001 7872000 0 0 Deletion 33999 LOC_Os03g14490 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr3 7838001 7872000 0 0 Deletion 33999 LOC_Os03g14500 expressed protein FN3126-S Chr3 7838001 7872000 0 0 Deletion 33999 LOC_Os03g14642 LTPL107 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3126-S Chr3 7959001 7974000 0 0 Deletion 14999 LOC_Os03g14654 LTPL108 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3126-S Chr3 7959001 7974000 0 0 Deletion 14999 LOC_Os03g15900 SH3 domain containing protein, expressed FN3126-S Chr3 9775001 9813000 0 0 Deletion 37999 LOC_Os03g17590 cat eye syndrome critical region protein 5 precursor, putative, expressed FN3126-S Chr3 9775001 9813000 0 0 Deletion 37999 LOC_Os03g17600 expressed protein FN3126-S Chr3 9775001 9813000 0 0 Deletion 37999 LOC_Os03g17610 OsTOP6A3 - Topoisomerase 6 subunit A homolog 3, expressed FN3126-S Chr3 9775001 9813000 0 0 Deletion 37999 LOC_Os03g17634 PPR repeat domain containing protein, putative, expressed FN3126-S Chr3 9775001 9813000 0 0 Deletion 37999 LOC_Os03g19340 WD domain, G-beta repeat domain containing protein, expressed FN3126-S Chr4 10106001 10123000 0 0 Deletion 16999 LOC_Os04g18300 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 10106001 10123000 0 0 Deletion 16999 LOC_Os04g18310 retrotransposon, putative, centromere-specific, expressed FN3126-S Chr4 10106001 10123000 0 0 Deletion 16999 LOC_Os04g18320 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr4 10106001 10123000 0 0 Deletion 16999 LOC_Os04g18330 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 10106001 10123000 0 0 Deletion 16999 LOC_Os04g18340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 10106001 10123000 0 0 Deletion 16999 LOC_Os04g18470 retrotransposon, putative, centromere-specific, expressed FN3126-S Chr4 10208001 10266000 0 0 Deletion 57999 LOC_Os04g18480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 10208001 10266000 0 0 Deletion 57999 LOC_Os04g18490 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr4 10208001 10266000 0 0 Deletion 57999 LOC_Os04g18500 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 10208001 10266000 0 0 Deletion 57999 LOC_Os04g18510 retrotransposon protein, putative, unclassified FN3126-S Chr4 10208001 10266000 0 0 Deletion 57999 LOC_Os04g18520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 10208001 10266000 0 0 Deletion 57999 LOC_Os04g18530 expressed protein FN3126-S Chr4 10208001 10266000 0 0 Deletion 57999 LOC_Os04g18540 hAT dimerisation domain containing protein, putative, expressed FN3126-S Chr4 10208001 10266000 0 0 Deletion 57999 LOC_Os04g18550 expressed protein FN3126-S Chr4 10208001 10266000 0 0 Deletion 57999 LOC_Os04g18559 retrotransposon protein, putative, unclassified FN3126-S Chr4 10208001 10266000 0 0 Deletion 57999 LOC_Os04g18570 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 10208001 10266000 0 0 Deletion 57999 LOC_Os04g18580 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 10229508 10229537 0 0 Deletion 29 frameshift_variant HET LOC_Os04g18500 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 10492001 10515000 0 0 Deletion 22999 LOC_Os04g18870 retrotransposon protein, putative, unclassified FN3126-S Chr4 10492001 10515000 0 0 Deletion 22999 LOC_Os04g18884 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr4 10492001 10515000 0 0 Deletion 22999 LOC_Os04g18900 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 10492001 10515000 0 0 Deletion 22999 LOC_Os04g18910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 10492001 10515000 0 0 Deletion 22999 LOC_Os04g19070 retrotransposon protein, putative, unclassified FN3126-S Chr4 10584001 10617000 0 0 Deletion 32999 LOC_Os04g19070 retrotransposon protein, putative, unclassified FN3126-S Chr4 10584001 10617000 0 0 Deletion 32999 LOC_Os04g19080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 10584001 10617000 0 0 Deletion 32999 LOC_Os04g19090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 10584001 10617000 0 0 Deletion 32999 LOC_Os04g19100 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 10584001 10617000 0 0 Deletion 32999 LOC_Os04g19114 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 10648001 10671000 0 0 Deletion 22999 LOC_Os04g19180 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr4 10648001 10671000 0 0 Deletion 22999 LOC_Os04g19190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 10648001 10671000 0 0 Deletion 22999 LOC_Os04g19200 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 10648001 10671000 0 0 Deletion 22999 LOC_Os04g19280 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 10753001 10775000 0 0 Deletion 21999 LOC_Os04g19340 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 10753001 10775000 0 0 Deletion 21999 LOC_Os04g19350 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr4 10753001 10775000 0 0 Deletion 21999 LOC_Os04g19360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 10753001 10775000 0 0 Deletion 21999 LOC_Os04g19500 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 10861001 10882000 0 0 Deletion 20999 LOC_Os04g19510 retrotransposon protein, putative, unclassified FN3126-S Chr4 10861001 10882000 0 0 Deletion 20999 LOC_Os04g19520 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr4 10861001 10882000 0 0 Deletion 20999 LOC_Os04g19530 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 10861001 10882000 0 0 Deletion 20999 LOC_Os04g19540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 11310001 11340000 0 0 Deletion 29999 LOC_Os04g20270 transcriptional regulator Sir2 family protein, putative, expressed FN3126-S Chr4 11310001 11340000 0 0 Deletion 29999 LOC_Os04g20280 expressed protein FN3126-S Chr4 11310001 11340000 0 0 Deletion 29999 LOC_Os04g20510 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 11591001 11634000 0 0 Deletion 42999 LOC_Os04g20700 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 11591001 11634000 0 0 Deletion 42999 LOC_Os04g20710 retrotransposon protein, putative, unclassified FN3126-S Chr4 11591001 11634000 0 0 Deletion 42999 LOC_Os04g20720 retrotransposon, putative, centromere-specific, expressed FN3126-S Chr4 11591001 11634000 0 0 Deletion 42999 LOC_Os04g20730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 11591001 11634000 0 0 Deletion 42999 LOC_Os04g21360 expressed protein FN3126-S Chr4 12069001 12096000 0 0 Deletion 26999 LOC_Os04g21370 expressed protein FN3126-S Chr4 12069001 12096000 0 0 Deletion 26999 LOC_Os04g21380 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 12069001 12096000 0 0 Deletion 26999 LOC_Os04g21390 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 12069001 12096000 0 0 Deletion 26999 LOC_Os04g21400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 12290072 Chr3 34340975 0 Translocation 0 LOC_Os03g60380 cinnamoyl CoA reductase, putative, expressed FN3126-S Chr4 12305001 12322000 0 0 Deletion 16999 LOC_Os04g21760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 12305001 12322000 0 0 Deletion 16999 LOC_Os04g21770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 12305001 12322000 0 0 Deletion 16999 LOC_Os04g22060 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 12493001 12514000 0 0 Deletion 20999 LOC_Os04g22070 expressed protein FN3126-S Chr4 12493001 12514000 0 0 Deletion 20999 LOC_Os04g22080 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 12493001 12514000 0 0 Deletion 20999 LOC_Os04g22090 NB-ARC domain containing protein, expressed FN3126-S Chr4 12493001 12514000 0 0 Deletion 20999 LOC_Os04g22160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22170 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22180 expressed protein FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22190 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22210 SCP-like extracellular protein, expressed FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22220 SCP-like extracellular protein, expressed FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22230 SCP-like extracellular protein, expressed FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22235 expressed protein FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22240 zinc finger, C3HC4 type domain containing protein, expressed FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22250 retrotransposon protein, putative, Ty1-copia subclass FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22260 expressed protein FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22270 expressed protein FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22280 hypothetical protein FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22290 expressed protein FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22300 expressed protein FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22320 hypothetical protein FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22330 SCP-like extracellular protein, expressed FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22340 SCP-like extracellular protein, expressed FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22350 expressed protein FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22360 DUF647 domain containing protein, putative, expressed FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22370 transposon protein, putative, unclassified FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22380 short chain dehydrogenase/reductase protein, putative, expressed FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22390 short chain dehydrogenase/reductase protein, putative, expressed FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22400 retrotransposon protein, putative, Ty1-copia subclass FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22410 expressed protein FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22420 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22430 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22440 expressed protein FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22450 expressed protein FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22460 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22470 SHR5-receptor-like kinase, putative, expressed FN3126-S Chr4 12555001 12721000 0 0 Deletion 165999 LOC_Os04g22520 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr4 12761001 12779000 0 0 Deletion 17999 LOC_Os04g22550 retrotransposon protein, putative, unclassified FN3126-S Chr4 12761001 12779000 0 0 Deletion 17999 LOC_Os04g22560 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 12761001 12779000 0 0 Deletion 17999 LOC_Os04g22570 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 12761001 12779000 0 0 Deletion 17999 LOC_Os04g22600 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 12800001 12828000 0 0 Deletion 27999 LOC_Os04g22610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 12800001 12828000 0 0 Deletion 27999 LOC_Os04g22620 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr4 12800001 12828000 0 0 Deletion 27999 LOC_Os04g22630 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 12800001 12828000 0 0 Deletion 27999 LOC_Os04g22640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 12800001 12828000 0 0 Deletion 27999 LOC_Os04g23090 hypothetical protein FN3126-S Chr4 13132001 13164000 0 0 Deletion 31999 LOC_Os04g23130 expressed protein FN3126-S Chr4 13132001 13164000 0 0 Deletion 31999 LOC_Os04g23140 expressed protein FN3126-S Chr4 13132001 13164000 0 0 Deletion 31999 LOC_Os04g23240 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 13384169 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g23410 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 13384170 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g23410 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 13455001 13531000 0 0 Deletion 75999 LOC_Os04g23550 basic helix-loop-helix family protein, putative, expressed FN3126-S Chr4 13455001 13531000 0 0 Deletion 75999 LOC_Os04g23570 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 13455001 13531000 0 0 Deletion 75999 LOC_Os04g23580 xylosyltransferase, putative, expressed FN3126-S Chr4 13455001 13531000 0 0 Deletion 75999 LOC_Os04g23590 hypothetical protein FN3126-S Chr4 13455001 13531000 0 0 Deletion 75999 LOC_Os04g23600 D-mannose binding lectin family protein, expressed FN3126-S Chr4 13455001 13531000 0 0 Deletion 75999 LOC_Os04g23610 expressed protein FN3126-S Chr4 13455001 13531000 0 0 Deletion 75999 LOC_Os04g23620 D-mannose binding lectin family protein, expressed FN3126-S Chr4 13455001 13531000 0 0 Deletion 75999 LOC_Os04g23630 expressed protein FN3126-S Chr4 13455001 13531000 0 0 Deletion 75999 LOC_Os04g23680 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 13544001 13562000 0 0 Deletion 17999 LOC_Os04g23689 expressed protein FN3126-S Chr4 13544001 13562000 0 0 Deletion 17999 LOC_Os04g23700 lectin protein kinase family protein, putative, expressed FN3126-S Chr4 13544001 13562000 0 0 Deletion 17999 LOC_Os04g23710 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr4 13544001 13562000 0 0 Deletion 17999 LOC_Os04g23739 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 13570001 13607000 0 0 Deletion 36999 LOC_Os04g23760 lectin protein kinase family protein, putative, expressed FN3126-S Chr4 13570001 13607000 0 0 Deletion 36999 LOC_Os04g23780 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 13570001 13607000 0 0 Deletion 36999 LOC_Os04g23799 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 13570001 13607000 0 0 Deletion 36999 LOC_Os04g24580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 1406001 1420000 0 0 Deletion 13999 LOC_Os04g03310 expressed protein FN3126-S Chr4 1406001 1420000 0 0 Deletion 13999 LOC_Os04g03320 jacalin-like lectin domain containing protein, expressed FN3126-S Chr4 1406001 1420000 0 0 Deletion 13999 LOC_Os04g03330 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr4 1406001 1420000 0 0 Deletion 13999 LOC_Os04g03340 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr4 14242001 14257000 0 0 Deletion 14999 LOC_Os04g24804 expressed protein FN3126-S Chr4 14242001 14257000 0 0 Deletion 14999 LOC_Os04g25890 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 1433001 1456000 0 0 Deletion 22999 LOC_Os04g03350 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 1433001 1456000 0 0 Deletion 22999 LOC_Os04g03360 jacalin-like lectin domain containing protein, expressed FN3126-S Chr4 1433001 1456000 0 0 Deletion 22999 LOC_Os04g03370 cysteine-rich receptor-like protein kinase 41 precursor, putative, expressed FN3126-S Chr4 1433001 1456000 0 0 Deletion 22999 LOC_Os04g03380 legume lectins beta domain containing protein, putative, expressed FN3126-S Chr4 1433001 1456000 0 0 Deletion 22999 LOC_Os04g03390 expressed protein FN3126-S Chr4 1433001 1456000 0 0 Deletion 22999 LOC_Os04g03400 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 145001 173000 0 0 Deletion 27999 LOC_Os04g01210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 145001 173000 0 0 Deletion 27999 LOC_Os04g02120 expressed protein FN3126-S Chr4 1476001 1503000 0 0 Deletion 26999 LOC_Os04g03440 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 1476001 1503000 0 0 Deletion 26999 LOC_Os04g03450 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 1476001 1503000 0 0 Deletion 26999 LOC_Os04g03460 retrotransposon protein, putative, unclassified FN3126-S Chr4 1476001 1503000 0 0 Deletion 26999 LOC_Os04g03470 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 14858156 14858157 0 0 Deletion 1 frameshift_variant HET LOC_Os04g25640 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 15050001 15086000 0 0 Deletion 35999 LOC_Os04g25890 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 15050001 15086000 0 0 Deletion 35999 LOC_Os04g25900 go35 NBS-LRR, putative, expressed FN3126-S Chr4 15050001 15086000 0 0 Deletion 35999 LOC_Os04g25910 hypothetical protein FN3126-S Chr4 15050001 15086000 0 0 Deletion 35999 LOC_Os04g25920 OsMADS85 - MADS-box family gene with M-gamma type-box, expressed FN3126-S Chr4 15050001 15086000 0 0 Deletion 35999 LOC_Os04g25930 OsMADS99 - MADS-box family gene with M-gamma type-box FN3126-S Chr4 15860166 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3126-S Chr4 1593001 1649000 0 0 Deletion 55999 LOC_Os04g03640 retrotransposon protein, putative, Ty1-copia subclass FN3126-S Chr4 1593001 1649000 0 0 Deletion 55999 LOC_Os04g03650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 1593001 1649000 0 0 Deletion 55999 LOC_Os04g03660 expressed protein FN3126-S Chr4 1593001 1649000 0 0 Deletion 55999 LOC_Os04g03680 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr4 1593001 1649000 0 0 Deletion 55999 LOC_Os04g03690 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 1593001 1649000 0 0 Deletion 55999 LOC_Os04g03700 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 1593001 1649000 0 0 Deletion 55999 LOC_Os04g03710 OsSub36 - Putative Subtilisin homologue, expressed FN3126-S Chr4 1593001 1649000 0 0 Deletion 55999 LOC_Os04g03720 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 1593001 1649000 0 0 Deletion 55999 LOC_Os04g03760 expressed protein FN3126-S Chr4 15939001 15979000 0 0 Deletion 39999 LOC_Os04g26960 terpene synthase, putative, expressed FN3126-S Chr4 15939001 15979000 0 0 Deletion 39999 LOC_Os04g26970 retrotransposon protein, putative, unclassified FN3126-S Chr4 15939001 15979000 0 0 Deletion 39999 LOC_Os04g26980 terpene synthase, putative, expressed FN3126-S Chr4 15939001 15979000 0 0 Deletion 39999 LOC_Os04g26994 retrotransposon protein, putative, unclassified FN3126-S Chr4 16027001 16072000 0 0 Deletion 44999 LOC_Os04g27094 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 16027001 16072000 0 0 Deletion 44999 LOC_Os04g27096 expressed protein FN3126-S Chr4 16027001 16072000 0 0 Deletion 44999 LOC_Os04g27160 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr4 16027001 16072000 0 0 Deletion 44999 LOC_Os04g27170 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr4 16027001 16072000 0 0 Deletion 44999 LOC_Os04g27180 expressed protein FN3126-S Chr4 16027001 16072000 0 0 Deletion 44999 LOC_Os04g27190 terpene synthase, putative, expressed FN3126-S Chr4 16027001 16072000 0 0 Deletion 44999 LOC_Os04g27200 expressed protein FN3126-S Chr4 16027001 16072000 0 0 Deletion 44999 LOC_Os04g27330 hypothetical protein FN3126-S Chr4 16150001 16174000 0 0 Deletion 23999 LOC_Os04g27340 terpene synthase, putative, expressed FN3126-S Chr4 16150001 16174000 0 0 Deletion 23999 LOC_Os04g27350 retrotransposon protein, putative, LINE subclass FN3126-S Chr4 16150001 16174000 0 0 Deletion 23999 LOC_Os04g27360 retrotransposon protein, putative, unclassified FN3126-S Chr4 16150001 16174000 0 0 Deletion 23999 LOC_Os04g27370 hypothetical protein FN3126-S Chr4 16150001 16174000 0 0 Deletion 23999 LOC_Os04g27420 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 16202001 16225000 0 0 Deletion 22999 LOC_Os04g27430 terpene synthase, putative, expressed FN3126-S Chr4 16202001 16225000 0 0 Deletion 22999 LOC_Os04g28120 response regulator receiver domain containing protein, expressed FN3126-S Chr4 1660001 1681000 0 0 Deletion 20999 LOC_Os04g03760 expressed protein FN3126-S Chr4 17365001 17422000 0 0 Deletion 56999 LOC_Os04g29300 retrotransposon protein, putative, unclassified FN3126-S Chr4 17365001 17422000 0 0 Deletion 56999 LOC_Os04g29310 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 17365001 17422000 0 0 Deletion 56999 LOC_Os04g29330 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 17365001 17422000 0 0 Deletion 56999 LOC_Os04g29350 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 17437001 17531000 0 0 Deletion 93999 LOC_Os04g29360 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 17437001 17531000 0 0 Deletion 93999 LOC_Os04g29370 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 17437001 17531000 0 0 Deletion 93999 LOC_Os04g29380 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 17437001 17531000 0 0 Deletion 93999 LOC_Os04g29400 hypothetical protein FN3126-S Chr4 17437001 17531000 0 0 Deletion 93999 LOC_Os04g29410 expressed protein FN3126-S Chr4 17437001 17531000 0 0 Deletion 93999 LOC_Os04g29424 retrotransposon protein, putative, LINE subclass, expressed FN3126-S Chr4 17437001 17531000 0 0 Deletion 93999 LOC_Os04g29440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 17437001 17531000 0 0 Deletion 93999 LOC_Os04g29450 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 17437001 17531000 0 0 Deletion 93999 LOC_Os04g29469 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 17437001 17531000 0 0 Deletion 93999 LOC_Os04g29490 expressed protein FN3126-S Chr4 17437001 17531000 0 0 Deletion 93999 LOC_Os04g29540 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 17548001 17563000 0 0 Deletion 14999 LOC_Os04g29550 RIPER2 - Ripening-related family protein precursor, expressed FN3126-S Chr4 17548001 17563000 0 0 Deletion 14999 LOC_Os04g29560 hypothetical protein FN3126-S Chr4 17548001 17563000 0 0 Deletion 14999 LOC_Os04g30620 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 1790001 1810000 0 0 Deletion 19999 LOC_Os04g03920 expressed protein FN3126-S Chr4 1790001 1810000 0 0 Deletion 19999 LOC_Os04g03930 expressed protein FN3126-S Chr4 1790001 1810000 0 0 Deletion 19999 LOC_Os04g03940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 1790001 1810000 0 0 Deletion 19999 LOC_Os04g03950 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 1790001 1810000 0 0 Deletion 19999 LOC_Os04g03960 hypothetical protein FN3126-S Chr4 1790001 1810000 0 0 Deletion 19999 LOC_Os04g03970 hypothetical protein FN3126-S Chr4 18283001 18301000 0 0 Deletion 17999 LOC_Os04g30630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 18283001 18301000 0 0 Deletion 17999 LOC_Os04g30640 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr4 18283001 18301000 0 0 Deletion 17999 LOC_Os04g31080 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr4 18565001 18593000 0 0 Deletion 27999 LOC_Os04g31090 expressed protein FN3126-S Chr4 18565001 18593000 0 0 Deletion 27999 LOC_Os04g31180 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 18657001 18708000 0 0 Deletion 50999 LOC_Os04g31190 dynamin family protein, putative, expressed FN3126-S Chr4 18657001 18708000 0 0 Deletion 50999 LOC_Os04g31200 hypothetical protein FN3126-S Chr4 18657001 18708000 0 0 Deletion 50999 LOC_Os04g31210 bile acid sodium symporter family protein, putative, expressed FN3126-S Chr4 18657001 18708000 0 0 Deletion 50999 LOC_Os04g31220 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr4 18657001 18708000 0 0 Deletion 50999 LOC_Os04g31230 expressed protein FN3126-S Chr4 18657001 18708000 0 0 Deletion 50999 LOC_Os04g31240 hydrolase, alpha/beta fold family protein, putative, expressed FN3126-S Chr4 18657001 18708000 0 0 Deletion 50999 LOC_Os04g31250 DEFL49 - Defensin and Defensin-like DEFL family, expressed FN3126-S Chr4 18657001 18708000 0 0 Deletion 50999 LOC_Os04g31260 hypothetical protein FN3126-S Chr4 18657001 18708000 0 0 Deletion 50999 LOC_Os04g31270 EMB1688, putative, expressed FN3126-S Chr4 18657001 18708000 0 0 Deletion 50999 LOC_Os04g34850 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr4 1884001 1903000 0 0 Deletion 18999 LOC_Os04g04100 hypothetical protein FN3126-S Chr4 1884001 1903000 0 0 Deletion 18999 LOC_Os04g04120 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr4 1929986 1929987 0 0 Deletion 1 downstream_gene_variant HET FN3126-S Chr4 1935001 1982000 0 0 Deletion 46999 LOC_Os04g04170 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr4 1935001 1982000 0 0 Deletion 46999 LOC_Os04g04180 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 1935001 1982000 0 0 Deletion 46999 LOC_Os04g04190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 1935001 1982000 0 0 Deletion 46999 LOC_Os04g04200 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 1935001 1982000 0 0 Deletion 46999 LOC_Os04g04210 expressed protein FN3126-S Chr4 1935001 1982000 0 0 Deletion 46999 LOC_Os04g04220 transposon protein, putative, unclassified, expressed FN3126-S Chr4 1935001 1982000 0 0 Deletion 46999 LOC_Os04g04230 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed FN3126-S Chr4 1935001 1982000 0 0 Deletion 46999 LOC_Os04g04240 sterol 3-beta-glucosyltransferase, putative, expressed FN3126-S Chr4 21135001 21149000 0 0 Deletion 13999 LOC_Os04g34860 expressed protein FN3126-S Chr4 21135001 21149000 0 0 Deletion 13999 LOC_Os04g35600 OsPDIL1-2 protein disulfide isomerase PDIL1-2, expressed FN3126-S Chr4 22567001 22594000 0 0 Deletion 26999 LOC_Os04g37950 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed FN3126-S Chr4 22567001 22594000 0 0 Deletion 26999 LOC_Os04g37960 synaptonemal complex protein 2, putative, expressed FN3126-S Chr4 23156001 23171000 0 0 Deletion 14999 LOC_Os04g38990 expressed protein FN3126-S Chr4 23156001 23171000 0 0 Deletion 14999 LOC_Os04g39000 pentatricopeptide, putative, expressed FN3126-S Chr4 23156001 23171000 0 0 Deletion 14999 LOC_Os04g39010 heavy metal associated domain containing protein, expressed FN3126-S Chr4 23156001 23171000 0 0 Deletion 14999 LOC_Os04g39060 CRS1/YhbY domain containing protein, expressed FN3126-S Chr4 23204001 23239000 0 0 Deletion 34999 LOC_Os04g39060 CRS1/YhbY domain containing protein, expressed FN3126-S Chr4 23204001 23239000 0 0 Deletion 34999 LOC_Os04g39070 OsFBX139 - F-box domain containing protein, expressed FN3126-S Chr4 23204001 23239000 0 0 Deletion 34999 LOC_Os04g39080 OsFBX140 - F-box domain containing protein, expressed FN3126-S Chr4 23204001 23239000 0 0 Deletion 34999 LOC_Os04g39090 SAM domain containing protein, putative, expressed FN3126-S Chr4 23204001 23239000 0 0 Deletion 34999 LOC_Os04g39100 peroxidase precursor, putative, expressed FN3126-S Chr4 24192001 24216000 0 0 Deletion 23999 LOC_Os04g40780 OsFBX145 - F-box domain containing protein, expressed FN3126-S Chr4 24192001 24216000 0 0 Deletion 23999 LOC_Os04g40790 conserved hypothetical protein FN3126-S Chr4 24192001 24216000 0 0 Deletion 23999 LOC_Os04g40800 OsFBL18 - F-box domain and LRR containing protein, expressed FN3126-S Chr4 24192001 24216000 0 0 Deletion 23999 LOC_Os04g42399 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr4 25085001 25097000 0 0 Deletion 11999 LOC_Os04g43020 protein kinase, putative, expressed FN3126-S Chr4 25458001 25481000 0 0 Deletion 22999 LOC_Os04g43030 lipase class 3 family protein, putative, expressed FN3126-S Chr4 25458001 25481000 0 0 Deletion 22999 LOC_Os04g43040 expressed protein FN3126-S Chr4 25458001 25481000 0 0 Deletion 22999 LOC_Os04g43050 Dicer, putative, expressed FN3126-S Chr4 25458001 25481000 0 0 Deletion 22999 LOC_Os04g43230 expressed protein FN3126-S Chr4 25582001 25601000 0 0 Deletion 18999 LOC_Os04g43240 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 25582001 25601000 0 0 Deletion 18999 LOC_Os04g43250 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 25582001 25601000 0 0 Deletion 18999 LOC_Os04g43260 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 25582001 25601000 0 0 Deletion 18999 LOC_Os04g43270 WAX2, putative, expressed FN3126-S Chr4 25582001 25601000 0 0 Deletion 18999 LOC_Os04g43420 PTAC5, putative, expressed FN3126-S Chr4 25700001 25741000 0 0 Deletion 40999 LOC_Os04g43420 PTAC5, putative, expressed FN3126-S Chr4 25700001 25741000 0 0 Deletion 40999 LOC_Os04g43430 pentatricopeptide, putative, expressed FN3126-S Chr4 25700001 25741000 0 0 Deletion 40999 LOC_Os04g43440 NB-ARC/LRR disease resistance protein, putative, expressed FN3126-S Chr4 25700001 25741000 0 0 Deletion 40999 LOC_Os04g43450 expressed protein FN3126-S Chr4 25700001 25741000 0 0 Deletion 40999 LOC_Os04g43464 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 25700001 25741000 0 0 Deletion 40999 LOC_Os04g43480 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 25700001 25741000 0 0 Deletion 40999 LOC_Os04g43490 CK1_CaseinKinase_1.7 - CK1 includes the casein kinase 1 kinases, expressed FN3126-S Chr4 25700001 25741000 0 0 Deletion 40999 LOC_Os04g43500 transposon protein, putative, unclassified FN3126-S Chr4 25997001 26014000 0 0 Deletion 16999 LOC_Os04g43900 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr4 25997001 26014000 0 0 Deletion 16999 LOC_Os04g43910 auxin response factor, putative, expressed FN3126-S Chr4 25997001 26014000 0 0 Deletion 16999 LOC_Os04g43990 DUF584 domain containing protein, putative, expressed FN3126-S Chr4 26073001 26109000 0 0 Deletion 35999 LOC_Os04g43990 DUF584 domain containing protein, putative, expressed FN3126-S Chr4 26073001 26109000 0 0 Deletion 35999 LOC_Os04g44000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 26073001 26109000 0 0 Deletion 35999 LOC_Os04g44010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 26073001 26109000 0 0 Deletion 35999 LOC_Os04g44020 expressed protein FN3126-S Chr4 26073001 26109000 0 0 Deletion 35999 LOC_Os04g44030 PPR repeat domain containing protein, putative, expressed FN3126-S Chr4 26073001 26109000 0 0 Deletion 35999 LOC_Os04g44050 expressed protein FN3126-S Chr4 26073001 26109000 0 0 Deletion 35999 LOC_Os04g44060 aquaporin protein, putative, expressed FN3126-S Chr4 26073001 26109000 0 0 Deletion 35999 LOC_Os04g44070 expressed protein FN3126-S Chr4 26073001 26109000 0 0 Deletion 35999 LOC_Os04g44080 expressed protein FN3126-S Chr4 26073001 26109000 0 0 Deletion 35999 LOC_Os04g44090 expressed protein FN3126-S Chr4 26665534 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g45070 remorin, putative, expressed FN3126-S Chr4 26806001 26819000 0 0 Deletion 12999 LOC_Os04g46550 hypothetical protein FN3126-S Chr4 27690001 27710000 0 0 Deletion 19999 LOC_Os04g46710 thioesterase family protein, putative, expressed FN3126-S Chr4 27690001 27710000 0 0 Deletion 19999 LOC_Os04g46720 transposon protein, putative, unclassified FN3126-S Chr4 27690001 27710000 0 0 Deletion 19999 LOC_Os04g46730 thioesterase family protein, putative, expressed FN3126-S Chr4 27690001 27710000 0 0 Deletion 19999 LOC_Os04g46740 pectinesterase, putative, expressed FN3126-S Chr4 27690001 27710000 0 0 Deletion 19999 LOC_Os04g47590 niemann-Pick C1 protein precursor, putative, expressed FN3126-S Chr4 28222001 28259000 0 0 Deletion 36999 LOC_Os04g47600 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr4 28222001 28259000 0 0 Deletion 36999 LOC_Os04g47810 ethylene-responsive protein related, putative, expressed FN3126-S Chr4 28370001 28394000 0 0 Deletion 23999 LOC_Os04g47820 expressed protein FN3126-S Chr4 28370001 28394000 0 0 Deletion 23999 LOC_Os04g47830 SNF2 family N-terminal domain containing protein, expressed FN3126-S Chr4 28370001 28394000 0 0 Deletion 23999 LOC_Os04g47840 expressed protein FN3126-S Chr4 28370001 28394000 0 0 Deletion 23999 LOC_Os04g48370 RNA polymerase IV subunit, putative, expressed FN3126-S Chr4 28834001 28853000 0 0 Deletion 18999 LOC_Os04g48375 WD domain, G-beta repeat domain containing protein, expressed FN3126-S Chr4 28834001 28853000 0 0 Deletion 18999 LOC_Os04g48900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 29412001 29437000 0 0 Deletion 24999 LOC_Os04g49280 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 29412001 29437000 0 0 Deletion 24999 LOC_Os04g49290 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 29412001 29437000 0 0 Deletion 24999 LOC_Os04g49300 retrotransposon protein, putative, LINE subclass, expressed FN3126-S Chr4 29412001 29437000 0 0 Deletion 24999 LOC_Os04g49310 tRNA-splicing endonuclease positive effector-related, putative, expressed FN3126-S Chr4 29412001 29437000 0 0 Deletion 24999 LOC_Os04g50810 expressed protein FN3126-S Chr4 30057001 30079000 0 0 Deletion 21999 LOC_Os04g50810 expressed protein FN3126-S Chr4 30057001 30079000 0 0 Deletion 21999 LOC_Os04g50820 oligopeptide transporter, putative, expressed FN3126-S Chr4 30057001 30079000 0 0 Deletion 21999 LOC_Os04g50830 retrotransposon protein, putative, LINE subclass, expressed FN3126-S Chr4 30057001 30079000 0 0 Deletion 21999 LOC_Os04g50840 expressed protein FN3126-S Chr4 30057001 30079000 0 0 Deletion 21999 LOC_Os04g50850 aspartyl protease family, putative, expressed FN3126-S Chr4 30057001 30079000 0 0 Deletion 21999 LOC_Os04g50860 expressed protein FN3126-S Chr4 30180001 30224000 0 0 Deletion 43999 LOC_Os04g51000 transcription factor FL, putative, expressed FN3126-S Chr4 30180001 30224000 0 0 Deletion 43999 LOC_Os04g51009 OsWAK52 - OsWAK short gene, expressed FN3126-S Chr4 30180001 30224000 0 0 Deletion 43999 LOC_Os04g51020 hypothetical protein FN3126-S Chr4 30180001 30224000 0 0 Deletion 43999 LOC_Os04g51030 wall-associated kinase 1, putative, expressed FN3126-S Chr4 30180001 30224000 0 0 Deletion 43999 LOC_Os04g51040 OsWAK50 - OsWAK receptor-like protein kinase, expressed FN3126-S Chr4 30180001 30224000 0 0 Deletion 43999 LOC_Os04g51050 OsWAK53b - OsWAK receptor-like protein kinase, expressed FN3126-S Chr4 30363698 30363700 0 0 Deletion 2 INTERGENIC HET FN3126-S Chr4 3089001 3152000 0 0 Deletion 62999 LOC_Os04g05980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 3089001 3152000 0 0 Deletion 62999 LOC_Os04g05990 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr4 3089001 3152000 0 0 Deletion 62999 LOC_Os04g06000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 3089001 3152000 0 0 Deletion 62999 LOC_Os04g06010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 3089001 3152000 0 0 Deletion 62999 LOC_Os04g06020 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr4 3089001 3152000 0 0 Deletion 62999 LOC_Os04g06030 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 3089001 3152000 0 0 Deletion 62999 LOC_Os04g06050 expressed protein FN3126-S Chr4 3089001 3152000 0 0 Deletion 62999 LOC_Os04g06070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 31783001 31806000 0 0 Deletion 22999 LOC_Os04g53370 acyltransferase, putative, expressed FN3126-S Chr4 31783001 31806000 0 0 Deletion 22999 LOC_Os04g53380 expressed protein FN3126-S Chr4 31783001 31806000 0 0 Deletion 22999 LOC_Os04g53390 MrBTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH-related domain, expressed FN3126-S Chr4 32415973 32415974 0 0 Deletion 1 INTERGENIC HOMO FN3126-S Chr4 32470009 32470010 0 0 Deletion 1 downstream_gene_variant HET FN3126-S Chr4 32728001 32743000 0 0 Deletion 14999 LOC_Os04g55040 vacuolar ATP synthase subunit D 1, putative, expressed FN3126-S Chr4 32728001 32743000 0 0 Deletion 14999 LOC_Os04g55050 amidase, putative, expressed FN3126-S Chr4 32728001 32743000 0 0 Deletion 14999 LOC_Os04g55060 3-oxoacyl-synthase III, chloroplast precursor, putative, expressed FN3126-S Chr4 32728001 32743000 0 0 Deletion 14999 LOC_Os04g55440 Cf-4A protein, putative, expressed FN3126-S Chr4 32973001 32984000 0 0 Deletion 10999 LOC_Os04g55450 transposon protein, putative, unclassified, expressed FN3126-S Chr4 32973001 32984000 0 0 Deletion 10999 LOC_Os04g56995 expressed protein FN3126-S Chr4 33981001 34036000 0 0 Deletion 54999 LOC_Os04g56995 expressed protein FN3126-S Chr4 33981001 34036000 0 0 Deletion 54999 LOC_Os04g57010 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed FN3126-S Chr4 33981001 34036000 0 0 Deletion 54999 LOC_Os04g57020 expressed protein FN3126-S Chr4 33981001 34036000 0 0 Deletion 54999 LOC_Os04g57030 VQ domain containing protein, putative, expressed FN3126-S Chr4 33981001 34036000 0 0 Deletion 54999 LOC_Os04g57040 expressed protein FN3126-S Chr4 33981001 34036000 0 0 Deletion 54999 LOC_Os04g57050 jasmonate O-methyltransferase, putative, expressed FN3126-S Chr4 33981001 34036000 0 0 Deletion 54999 LOC_Os04g57060 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 33981001 34036000 0 0 Deletion 54999 LOC_Os04g57070 jasmonate O-methyltransferase, putative, expressed FN3126-S Chr4 33981001 34036000 0 0 Deletion 54999 LOC_Os04g57080 jasmonate O-methyltransferase, putative, expressed FN3126-S Chr4 33981001 34036000 0 0 Deletion 54999 LOC_Os04g57090 jasmonate O-methyltransferase, putative, expressed FN3126-S Chr4 33981001 34036000 0 0 Deletion 54999 LOC_Os04g57100 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 33981001 34036000 0 0 Deletion 54999 LOC_Os04g57110 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 34131011 C-A 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN3126-S Chr4 3439001 3456000 0 0 Deletion 16999 LOC_Os04g06560 retrotransposon protein, putative, unclassified FN3126-S Chr4 3439001 3456000 0 0 Deletion 16999 LOC_Os04g06590 expressed protein FN3126-S Chr4 34616001 34629000 0 0 Deletion 12999 LOC_Os04g58140 elongation factor Tu, putative, expressed FN3126-S Chr4 34616001 34629000 0 0 Deletion 12999 LOC_Os05g02850 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 3470001 3485000 0 0 Deletion 14999 LOC_Os04g06600 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 3470001 3485000 0 0 Deletion 14999 LOC_Os04g06610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 3470001 3485000 0 0 Deletion 14999 LOC_Os04g08470 OsFBX116 - F-box domain containing protein, expressed FN3126-S Chr4 4564001 4613000 0 0 Deletion 48999 LOC_Os04g08480 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 4564001 4613000 0 0 Deletion 48999 LOC_Os04g08500 conserved hypothetical protein FN3126-S Chr4 4564001 4613000 0 0 Deletion 48999 LOC_Os04g08510 OsFBX117 - F-box domain containing protein, expressed FN3126-S Chr4 4564001 4613000 0 0 Deletion 48999 LOC_Os04g08520 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr4 4564001 4613000 0 0 Deletion 48999 LOC_Os04g09360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 5180001 5209000 0 0 Deletion 28999 LOC_Os04g09654 O-methyltransferase, putative, expressed FN3126-S Chr4 5180001 5209000 0 0 Deletion 28999 LOC_Os04g09670 O-methyltransferase, putative, expressed FN3126-S Chr4 5180001 5209000 0 0 Deletion 28999 LOC_Os04g09680 caffeic acid 3-O-methyltransferase, putative, expressed FN3126-S Chr4 5180001 5209000 0 0 Deletion 28999 LOC_Os04g09690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 5180001 5209000 0 0 Deletion 28999 LOC_Os04g09700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 5180001 5209000 0 0 Deletion 28999 LOC_Os04g09710 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 5180001 5209000 0 0 Deletion 28999 LOC_Os04g09720 OsSCP22 - Putative Serine Carboxypeptidase homologue, expressed FN3126-S Chr4 5490001 5515000 0 0 Deletion 24999 LOC_Os04g10180 expressed protein FN3126-S Chr4 5490001 5515000 0 0 Deletion 24999 LOC_Os04g10190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 5490001 5515000 0 0 Deletion 24999 LOC_Os04g10200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 5490001 5515000 0 0 Deletion 24999 LOC_Os04g10380 glycine-rich protein, putative, expressed FN3126-S Chr4 5614001 5629000 0 0 Deletion 14999 LOC_Os04g10380 glycine-rich protein, putative, expressed FN3126-S Chr4 6070001 6099000 0 0 Deletion 28999 LOC_Os04g11170 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 6070001 6099000 0 0 Deletion 28999 LOC_Os04g11180 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 6070001 6099000 0 0 Deletion 28999 LOC_Os04g11195 gamma-thionin family domain containing protein, expressed FN3126-S Chr4 6070001 6099000 0 0 Deletion 28999 LOC_Os04g11200 expressed protein FN3126-S Chr4 6070001 6099000 0 0 Deletion 28999 LOC_Os04g11350 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 6195001 6216000 0 0 Deletion 20999 LOC_Os04g11370 expressed protein FN3126-S Chr4 6195001 6216000 0 0 Deletion 20999 LOC_Os04g11390 expressed protein FN3126-S Chr4 6226001 6247000 0 0 Deletion 20999 LOC_Os04g11400 expressed protein FN3126-S Chr4 6226001 6247000 0 0 Deletion 20999 LOC_Os04g11410 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr4 6226001 6247000 0 0 Deletion 20999 LOC_Os04g11420 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr4 6226001 6247000 0 0 Deletion 20999 LOC_Os04g11830 TCP family transcription factor, putative, expressed FN3126-S Chr4 6524001 6542000 0 0 Deletion 17999 LOC_Os04g11900 expressed protein FN3126-S Chr4 6524001 6542000 0 0 Deletion 17999 LOC_Os04g11910 transposon protein, putative, unclassified, expressed FN3126-S Chr4 695001 708000 0 0 Deletion 12999 LOC_Os04g02130 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 695001 708000 0 0 Deletion 12999 LOC_Os04g02140 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 695001 708000 0 0 Deletion 12999 LOC_Os04g03300 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 7014057 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3126-S Chr4 7118001 7135000 0 0 Deletion 16999 LOC_Os04g12890 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 7118001 7135000 0 0 Deletion 16999 LOC_Os04g12900 glucosyltransferase, putative, expressed FN3126-S Chr4 7118001 7135000 0 0 Deletion 16999 LOC_Os04g14170 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 7926001 7940000 0 0 Deletion 13999 LOC_Os04g14210 expressed protein FN3126-S Chr4 7975001 8014000 0 0 Deletion 38999 LOC_Os04g14240 expressed protein FN3126-S Chr4 7975001 8014000 0 0 Deletion 38999 LOC_Os04g14250 expressed protein FN3126-S Chr4 7975001 8014000 0 0 Deletion 38999 LOC_Os04g14260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 7975001 8014000 0 0 Deletion 38999 LOC_Os04g14270 latency associated nuclear antigen, putative, expressed FN3126-S Chr4 7975001 8014000 0 0 Deletion 38999 LOC_Os04g14280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 7975001 8014000 0 0 Deletion 38999 LOC_Os04g14290 hypothetical protein FN3126-S Chr4 7975001 8014000 0 0 Deletion 38999 LOC_Os04g14304 OsWAK30/31 - OsWAK receptor-like protein OsWAK-RLP, expressed FN3126-S Chr4 7975001 8014000 0 0 Deletion 38999 LOC_Os04g14560 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr4 8150001 8169000 0 0 Deletion 18999 LOC_Os04g14570 expressed protein FN3126-S Chr4 8150001 8169000 0 0 Deletion 18999 LOC_Os04g14760 phosphoglycerate mutase, putative, expressed FN3126-S Chr4 8285001 8303000 0 0 Deletion 17999 LOC_Os04g14770 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 8285001 8303000 0 0 Deletion 17999 LOC_Os04g14780 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 8285001 8303000 0 0 Deletion 17999 LOC_Os04g16150 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 8776001 8817000 0 0 Deletion 40999 LOC_Os04g16170 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 8776001 8817000 0 0 Deletion 40999 LOC_Os04g16180 retrotransposon protein, putative, unclassified FN3126-S Chr4 8776001 8817000 0 0 Deletion 40999 LOC_Os04g16190 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 8776001 8817000 0 0 Deletion 40999 LOC_Os04g16200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 8776001 8817000 0 0 Deletion 40999 LOC_Os04g16220 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr4 8776001 8817000 0 0 Deletion 40999 LOC_Os04g16230 expressed protein FN3126-S Chr4 8776001 8817000 0 0 Deletion 40999 LOC_Os04g16350 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 8881001 8926000 0 0 Deletion 44999 LOC_Os04g16360 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr4 8881001 8926000 0 0 Deletion 44999 LOC_Os04g16370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 8881001 8926000 0 0 Deletion 44999 LOC_Os04g16380 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 8881001 8926000 0 0 Deletion 44999 LOC_Os04g16390 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 8881001 8926000 0 0 Deletion 44999 LOC_Os04g16400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 8881001 8926000 0 0 Deletion 44999 LOC_Os04g16410 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr4 8881001 8926000 0 0 Deletion 44999 LOC_Os04g16420 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr4 8881001 8926000 0 0 Deletion 44999 LOC_Os04g16670 expressed protein FN3126-S Chr4 9066001 9078000 0 0 Deletion 11999 LOC_Os04g16670 expressed protein FN3126-S Chr4 9066001 9078000 0 0 Deletion 11999 LOC_Os04g16680 fructose-1,6-bisphosphatase, putative, expressed FN3126-S Chr4 9452182 9452184 0 0 Deletion 2 intron_variant HET FN3126-S Chr4 9502001 9516000 0 0 Deletion 13999 LOC_Os04g17350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr4 9502001 9516000 0 0 Deletion 13999 LOC_Os04g17360 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr4 9502001 9516000 0 0 Deletion 13999 LOC_Os04g17370 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr4 9502001 9516000 0 0 Deletion 13999 LOC_Os04g17380 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr4 9502001 9516000 0 0 Deletion 13999 LOC_Os04g18290 retrotransposon protein, putative, unclassified FN3126-S Chr4 9860782 9860825 0 0 Deletion 43 upstream_gene_variant HET FN3126-S Chr5 10232001 10281000 0 0 Deletion 48999 LOC_Os05g17810 SHR5-receptor-like kinase, putative, expressed FN3126-S Chr5 10232001 10281000 0 0 Deletion 48999 LOC_Os05g17820 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr5 10232001 10281000 0 0 Deletion 48999 LOC_Os05g17830 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 10232001 10281000 0 0 Deletion 48999 LOC_Os05g17840 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr5 10232001 10281000 0 0 Deletion 48999 LOC_Os05g17849 expressed protein FN3126-S Chr5 10232001 10281000 0 0 Deletion 48999 LOC_Os05g17860 retrotransposon protein, putative, unclassified FN3126-S Chr5 10232001 10281000 0 0 Deletion 48999 LOC_Os05g17870 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 10232001 10281000 0 0 Deletion 48999 LOC_Os05g17880 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 10232001 10281000 0 0 Deletion 48999 LOC_Os05g17960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr5 10320001 10357000 0 0 Deletion 36999 LOC_Os05g17960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr5 10320001 10357000 0 0 Deletion 36999 LOC_Os05g17970 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 10320001 10357000 0 0 Deletion 36999 LOC_Os05g17980 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 10320001 10357000 0 0 Deletion 36999 LOC_Os05g17990 expressed protein FN3126-S Chr5 10320001 10357000 0 0 Deletion 36999 LOC_Os05g18000 retrotransposon protein, putative, LINE subclass, expressed FN3126-S Chr5 1036001 1072000 0 0 Deletion 35999 LOC_Os05g02870 white-brown complex homolog protein, putative, expressed FN3126-S Chr5 1036001 1072000 0 0 Deletion 35999 LOC_Os05g02880 splicing factor, arginine/serine-rich 7, putative, expressed FN3126-S Chr5 1036001 1072000 0 0 Deletion 35999 LOC_Os05g02890 white-brown complex homolog protein 16, putative, expressed FN3126-S Chr5 1036001 1072000 0 0 Deletion 35999 LOC_Os05g02900 expressed protein FN3126-S Chr5 1036001 1072000 0 0 Deletion 35999 LOC_Os05g02920 expressed protein FN3126-S Chr5 1036001 1072000 0 0 Deletion 35999 LOC_Os05g03000 inner membrane protein alx, putative, expressed FN3126-S Chr5 11157001 11180000 0 0 Deletion 22999 LOC_Os05g19230 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr5 11157001 11180000 0 0 Deletion 22999 LOC_Os05g19240 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr5 11157001 11180000 0 0 Deletion 22999 LOC_Os05g19580 expressed protein FN3126-S Chr5 1119001 1130000 0 0 Deletion 10999 LOC_Os05g04410 peroxidase precursor, putative, expressed FN3126-S Chr5 11396001 11409000 0 0 Deletion 12999 LOC_Os05g19930 retrotransposon protein, putative, unclassified FN3126-S Chr5 11629001 11655000 0 0 Deletion 25999 LOC_Os05g19940 retrotransposon protein, putative, unclassified FN3126-S Chr5 11629001 11655000 0 0 Deletion 25999 LOC_Os05g19954 tRNA pseudouridine synthase family protein, putative, expressed FN3126-S Chr5 11913001 12015000 0 0 Deletion 101999 LOC_Os05g20330 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 11913001 12015000 0 0 Deletion 101999 LOC_Os05g20340 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 11913001 12015000 0 0 Deletion 101999 LOC_Os05g20350 expressed protein FN3126-S Chr5 11913001 12015000 0 0 Deletion 101999 LOC_Os05g20360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr5 11913001 12015000 0 0 Deletion 101999 LOC_Os05g20370 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 11913001 12015000 0 0 Deletion 101999 LOC_Os05g20380 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 11913001 12015000 0 0 Deletion 101999 LOC_Os05g20390 transposon protein, putative, unclassified, expressed FN3126-S Chr5 11913001 12015000 0 0 Deletion 101999 LOC_Os05g20400 transposon protein, putative, unclassified, expressed FN3126-S Chr5 11913001 12015000 0 0 Deletion 101999 LOC_Os05g20410 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr5 11913001 12015000 0 0 Deletion 101999 LOC_Os05g20420 expressed protein FN3126-S Chr5 11913001 12015000 0 0 Deletion 101999 LOC_Os05g20430 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 11913001 12015000 0 0 Deletion 101999 LOC_Os05g20440 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 11913001 12015000 0 0 Deletion 101999 LOC_Os05g20450 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 11913001 12015000 0 0 Deletion 101999 LOC_Os05g20460 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 11913001 12015000 0 0 Deletion 101999 LOC_Os05g20470 expressed protein FN3126-S Chr5 12287001 12359000 0 0 Deletion 71999 LOC_Os05g20920 retrotransposon, putative, centromere-specific, expressed FN3126-S Chr5 12287001 12359000 0 0 Deletion 71999 LOC_Os05g20930 ZOS5-07 - C2H2 zinc finger protein, expressed FN3126-S Chr5 12287001 12359000 0 0 Deletion 71999 LOC_Os05g20940 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr5 12287001 12359000 0 0 Deletion 71999 LOC_Os05g20950 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 12287001 12359000 0 0 Deletion 71999 LOC_Os05g20954 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 12287001 12359000 0 0 Deletion 71999 LOC_Os05g20960 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr5 12287001 12359000 0 0 Deletion 71999 LOC_Os05g20970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr5 12287001 12359000 0 0 Deletion 71999 LOC_Os05g20980 transposable element protein, putative, containing Pfam profile: PF03004, Transposase_24, expressed FN3126-S Chr5 12287001 12359000 0 0 Deletion 71999 LOC_Os05g20990 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr5 12287001 12359000 0 0 Deletion 71999 LOC_Os05g21000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr5 12287001 12359000 0 0 Deletion 71999 LOC_Os05g22314 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 13034001 13070000 0 0 Deletion 35999 LOC_Os05g22920 digestive organ expansion factor, putative, expressed FN3126-S Chr5 13034001 13070000 0 0 Deletion 35999 LOC_Os05g22930 CAAX amino terminal protease family protein, putative, expressed FN3126-S Chr5 13034001 13070000 0 0 Deletion 35999 LOC_Os05g22940 acetyl-CoA carboxylase, putative, expressed FN3126-S Chr5 13439001 13465000 0 0 Deletion 25999 LOC_Os05g23500 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 13439001 13465000 0 0 Deletion 25999 LOC_Os05g23810 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 13547806 13547812 0 0 Deletion 6 INTERGENIC HOMO FN3126-S Chr5 13687001 13717000 0 0 Deletion 29999 LOC_Os05g23830 endo-1,4-beta-xylanase, putative, expressed FN3126-S Chr5 13687001 13717000 0 0 Deletion 29999 LOC_Os05g23840 expressed protein FN3126-S Chr5 13687001 13717000 0 0 Deletion 29999 LOC_Os05g23850 expressed protein FN3126-S Chr5 13687001 13717000 0 0 Deletion 29999 LOC_Os05g23860 rab GDP dissociation inhibitor alpha, putative, expressed FN3126-S Chr5 13687001 13717000 0 0 Deletion 29999 LOC_Os05g23900 expressed protein FN3126-S Chr5 13743001 13755000 0 0 Deletion 11999 LOC_Os05g23910 histone-like transcription factor and archaeal histone, putative, expressed FN3126-S Chr5 13743001 13755000 0 0 Deletion 11999 LOC_Os05g23960 pentatricopeptide, putative, expressed FN3126-S Chr5 13787001 13801000 0 0 Deletion 13999 LOC_Os05g23970 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 13787001 13801000 0 0 Deletion 13999 LOC_Os05g24190 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr5 13972001 13989000 0 0 Deletion 16999 LOC_Os05g24410 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 14109001 14117000 0 0 Deletion 7999 LOC_Os05g24440 retrotransposon protein, putative, unclassified FN3126-S Chr5 14109001 14117000 0 0 Deletion 7999 LOC_Os05g24450 hypothetical protein FN3126-S Chr5 14109001 14117000 0 0 Deletion 7999 LOC_Os05g24840 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 14394001 14412000 0 0 Deletion 17999 LOC_Os05g24850 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr5 14394001 14412000 0 0 Deletion 17999 LOC_Os05g24860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr5 14394001 14412000 0 0 Deletion 17999 LOC_Os05g24870 expressed protein FN3126-S Chr5 14394001 14412000 0 0 Deletion 17999 LOC_Os05g24880 dehydrogenase, putative, expressed FN3126-S Chr5 14394001 14412000 0 0 Deletion 17999 LOC_Os05g24930 PPR repeat containing protein, expressed FN3126-S Chr5 14429001 14448000 0 0 Deletion 18999 LOC_Os05g24940 expressed protein FN3126-S Chr5 14429001 14448000 0 0 Deletion 18999 LOC_Os05g24950 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 14429001 14448000 0 0 Deletion 18999 LOC_Os05g24960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr5 14429001 14448000 0 0 Deletion 18999 LOC_Os05g25020 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr5 14485001 14521000 0 0 Deletion 35999 LOC_Os05g25030 expressed protein FN3126-S Chr5 14485001 14521000 0 0 Deletion 35999 LOC_Os05g25040 expressed protein FN3126-S Chr5 14485001 14521000 0 0 Deletion 35999 LOC_Os05g25050 expressed protein FN3126-S Chr5 14485001 14521000 0 0 Deletion 35999 LOC_Os05g25060 PPR repeat domain containing protein, putative, expressed FN3126-S Chr5 14485001 14521000 0 0 Deletion 35999 LOC_Os05g25070 expressed protein FN3126-S Chr5 14485001 14521000 0 0 Deletion 35999 LOC_Os05g25075 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 14485001 14521000 0 0 Deletion 35999 LOC_Os05g25080 transposon protein, putative, unclassified, expressed FN3126-S Chr5 14744001 14771000 0 0 Deletion 26999 LOC_Os05g25390 tyrosine protein kinase domain containing protein, putative, expressed FN3126-S Chr5 14744001 14771000 0 0 Deletion 26999 LOC_Os05g25400 RNA binding protein, putative, expressed FN3126-S Chr5 15051001 15078000 0 0 Deletion 26999 LOC_Os05g25860 expressed protein FN3126-S Chr5 15051001 15078000 0 0 Deletion 26999 LOC_Os05g25870 N-dimethylguanosine tRNA methyltransferase, putative, expressed FN3126-S Chr5 15051001 15078000 0 0 Deletion 26999 LOC_Os05g25880 N-dimethylguanosine tRNA methyltransferase, putative, expressed FN3126-S Chr5 15051001 15078000 0 0 Deletion 26999 LOC_Os05g25890 expressed protein FN3126-S Chr5 15051001 15078000 0 0 Deletion 26999 LOC_Os05g25900 expressed protein FN3126-S Chr5 15051001 15078000 0 0 Deletion 26999 LOC_Os05g25910 DUF623 domain containing protein, expressed FN3126-S Chr5 15051001 15078000 0 0 Deletion 26999 LOC_Os05g25914 expressed protein FN3126-S Chr5 15051001 15078000 0 0 Deletion 26999 LOC_Os05g25920 expressed protein FN3126-S Chr5 15051001 15078000 0 0 Deletion 26999 LOC_Os05g26020 cyclin, putative, expressed FN3126-S Chr5 15125001 15194000 0 0 Deletion 68999 LOC_Os05g26026 expressed protein FN3126-S Chr5 15125001 15194000 0 0 Deletion 68999 LOC_Os05g26032 expressed protein FN3126-S Chr5 15125001 15194000 0 0 Deletion 68999 LOC_Os05g26040 pumilio-family RNA binding repeat containing protein, expressed FN3126-S Chr5 15125001 15194000 0 0 Deletion 68999 LOC_Os05g26049 expressed protein FN3126-S Chr5 15125001 15194000 0 0 Deletion 68999 LOC_Os05g26060 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 15125001 15194000 0 0 Deletion 68999 LOC_Os05g26070 cyclin, putative, expressed FN3126-S Chr5 15125001 15194000 0 0 Deletion 68999 LOC_Os05g26080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr5 15125001 15194000 0 0 Deletion 68999 LOC_Os05g26090 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr5 15125001 15194000 0 0 Deletion 68999 LOC_Os05g26100 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr5 15125001 15194000 0 0 Deletion 68999 LOC_Os05g26110 transposon protein, putative, Mutator sub-class, expressed FN3126-S Chr5 15125001 15194000 0 0 Deletion 68999 LOC_Os05g26120 expressed protein FN3126-S Chr5 15125001 15194000 0 0 Deletion 68999 LOC_Os05g26330 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr5 15316001 15354000 0 0 Deletion 37999 LOC_Os05g26340 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr5 15316001 15354000 0 0 Deletion 37999 LOC_Os05g26350 PROLM4 - Prolamin precursor, expressed FN3126-S Chr5 15316001 15354000 0 0 Deletion 37999 LOC_Os05g26368 prolamin precursor, putative, expressed FN3126-S Chr5 15316001 15354000 0 0 Deletion 37999 LOC_Os05g26377 PROLM9 - Prolamin precursor, expressed FN3126-S Chr5 15316001 15354000 0 0 Deletion 37999 LOC_Os05g26386 prolamin precursor, putative, expressed FN3126-S Chr5 15316001 15354000 0 0 Deletion 37999 LOC_Os05g26410 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr5 15510001 15538000 0 0 Deletion 27999 LOC_Os05g26710 retrotransposon protein, putative, unclassified FN3126-S Chr5 15510001 15538000 0 0 Deletion 27999 LOC_Os05g26720 PROLM16 - Prolamin precursor, expressed FN3126-S Chr5 15510001 15538000 0 0 Deletion 27999 LOC_Os05g26730 retrotransposon protein, putative, LINE subclass, expressed FN3126-S Chr5 15510001 15538000 0 0 Deletion 27999 LOC_Os05g26740 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 15510001 15538000 0 0 Deletion 27999 LOC_Os05g26750 PROLM17 - Prolamin precursor, expressed FN3126-S Chr5 15510001 15538000 0 0 Deletion 27999 LOC_Os05g26760 expressed protein FN3126-S Chr5 15510001 15538000 0 0 Deletion 27999 LOC_Os05g26770 PROLM18 - Prolamin precursor, expressed FN3126-S Chr5 15510001 15538000 0 0 Deletion 27999 LOC_Os05g26780 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 15599001 15613000 0 0 Deletion 13999 LOC_Os05g27130 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr5 15785001 15796000 0 0 Deletion 10999 LOC_Os05g27140 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr5 15785001 15796000 0 0 Deletion 10999 LOC_Os05g27590 wound-induced protein WI12, putative, expressed FN3126-S Chr5 16051001 16083000 0 0 Deletion 31999 LOC_Os05g27600 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr5 16051001 16083000 0 0 Deletion 31999 LOC_Os05g27610 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr5 16051001 16083000 0 0 Deletion 31999 LOC_Os05g27620 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr5 16051001 16083000 0 0 Deletion 31999 LOC_Os05g27630 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr5 16051001 16083000 0 0 Deletion 31999 LOC_Os05g27640 expressed protein FN3126-S Chr5 16051001 16083000 0 0 Deletion 31999 LOC_Os05g27870 expressed protein FN3126-S Chr5 16517001 16535000 0 0 Deletion 17999 LOC_Os05g28210 small hydrophilic plant seed protein, putative, expressed FN3126-S Chr5 16517001 16535000 0 0 Deletion 17999 LOC_Os05g28220 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 16517001 16535000 0 0 Deletion 17999 LOC_Os05g29790 pectinesterase, putative, expressed FN3126-S Chr5 17407001 17428000 0 0 Deletion 20999 LOC_Os05g30090 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 17407001 17428000 0 0 Deletion 20999 LOC_Os05g30100 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 18664001 18691000 0 0 Deletion 26999 LOC_Os05g32040 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 18664001 18691000 0 0 Deletion 26999 LOC_Os05g32050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr5 18664001 18691000 0 0 Deletion 26999 LOC_Os05g32060 expressed protein FN3126-S Chr5 18664001 18691000 0 0 Deletion 26999 LOC_Os05g32900 hexose carrier protein HEX6, putative FN3126-S Chr5 19269001 19300000 0 0 Deletion 30999 LOC_Os05g32910 retrotransposon protein, putative, unclassified FN3126-S Chr5 19269001 19300000 0 0 Deletion 30999 LOC_Os05g32920 expressed protein FN3126-S Chr5 19269001 19300000 0 0 Deletion 30999 LOC_Os05g32930 retrotransposon protein, putative, unclassified FN3126-S Chr5 19269001 19300000 0 0 Deletion 30999 LOC_Os05g32940 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr5 19269001 19300000 0 0 Deletion 30999 LOC_Os05g32950 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr5 19269001 19300000 0 0 Deletion 30999 LOC_Os05g33330 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr5 19583867 A-C 0 0 Single Base Substitution 0 INTRON HOMO FN3126-S Chr5 19840224 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3126-S Chr5 20103001 20115000 0 0 Deletion 11999 LOC_Os05g34050 bZIP transcription factor domain containing protein, expressed FN3126-S Chr5 20103001 20115000 0 0 Deletion 11999 LOC_Os05g34440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr5 20219596 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g34190 retrotransposon protein, putative, unclassified FN3126-S Chr5 20400001 20412000 0 0 Deletion 11999 LOC_Os05g35160 clathrin assembly protein, putative, expressed FN3126-S Chr5 20882001 20893000 0 0 Deletion 10999 LOC_Os05g35180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr5 20882001 20893000 0 0 Deletion 10999 LOC_Os05g37270 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 21803001 21904000 0 0 Deletion 100999 LOC_Os05g37280 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 21803001 21904000 0 0 Deletion 100999 LOC_Os05g37290 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 21803001 21904000 0 0 Deletion 100999 LOC_Os05g37300 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 21803001 21904000 0 0 Deletion 100999 LOC_Os05g37310 expressed protein FN3126-S Chr5 21803001 21904000 0 0 Deletion 100999 LOC_Os05g37320 transposon protein, putative, unclassified, expressed FN3126-S Chr5 21803001 21904000 0 0 Deletion 100999 LOC_Os05g37330 60S acidic ribosomal protein, putative, expressed FN3126-S Chr5 21803001 21904000 0 0 Deletion 100999 LOC_Os05g37340 expressed protein FN3126-S Chr5 21803001 21904000 0 0 Deletion 100999 LOC_Os05g37350 hhH-GPD superfamily base excision DNA repair protein, expressed FN3126-S Chr5 21803001 21904000 0 0 Deletion 100999 LOC_Os05g37360 hypothetical protein FN3126-S Chr5 21803001 21904000 0 0 Deletion 100999 LOC_Os05g37370 retrotransposon protein, putative, unclassified FN3126-S Chr5 21803001 21904000 0 0 Deletion 100999 LOC_Os05g37380 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 21803001 21904000 0 0 Deletion 100999 LOC_Os05g37390 G10 protein, putative, expressed FN3126-S Chr5 21803001 21904000 0 0 Deletion 100999 LOC_Os05g37400 expressed protein FN3126-S Chr5 21803001 21904000 0 0 Deletion 100999 LOC_Os05g37410 hhH-GPD superfamily base excision DNA repair protein, expressed FN3126-S Chr5 21803001 21904000 0 0 Deletion 100999 LOC_Os05g37420 expressed protein FN3126-S Chr5 21803001 21904000 0 0 Deletion 100999 LOC_Os05g37434 arginyl-tRNA--protein transferase 1, putative, expressed FN3126-S Chr5 22933001 22950000 0 0 Deletion 16999 LOC_Os05g39120 expressed protein FN3126-S Chr5 22933001 22950000 0 0 Deletion 16999 LOC_Os05g39130 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 22933001 22950000 0 0 Deletion 16999 LOC_Os05g40080 WRKY54, expressed FN3126-S Chr5 23546001 23561000 0 0 Deletion 14999 LOC_Os05g40090 transposon protein, putative, unclassified, expressed FN3126-S Chr5 23546001 23561000 0 0 Deletion 14999 LOC_Os05g40100 retrotransposon protein, putative, unclassified FN3126-S Chr5 23546001 23561000 0 0 Deletion 14999 LOC_Os05g40330 auxin efflux carrier component, putative, expressed FN3126-S Chr5 23702001 23719000 0 0 Deletion 16999 LOC_Os05g40350 expressed protein FN3126-S Chr5 23702001 23719000 0 0 Deletion 16999 LOC_Os05g40360 expressed protein FN3126-S Chr5 23702001 23719000 0 0 Deletion 16999 LOC_Os05g41840 expressed protein FN3126-S Chr5 24504001 24517000 0 0 Deletion 12999 LOC_Os05g41850 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr5 24504001 24517000 0 0 Deletion 12999 LOC_Os05g41860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr5 24924001 24984000 0 0 Deletion 59999 LOC_Os05g42940 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr5 24924001 24984000 0 0 Deletion 59999 LOC_Os05g42950 retrotransposon protein, putative, unclassified FN3126-S Chr5 24924001 24984000 0 0 Deletion 59999 LOC_Os05g42960 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 24924001 24984000 0 0 Deletion 59999 LOC_Os05g42970 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr5 24924001 24984000 0 0 Deletion 59999 LOC_Os05g42980 expressed protein FN3126-S Chr5 24924001 24984000 0 0 Deletion 59999 LOC_Os05g42990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr5 24924001 24984000 0 0 Deletion 59999 LOC_Os05g43000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr5 24924001 24984000 0 0 Deletion 59999 LOC_Os05g43010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr5 24924001 24984000 0 0 Deletion 59999 LOC_Os05g43020 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr5 24924001 24984000 0 0 Deletion 59999 LOC_Os05g44916 mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed FN3126-S Chr5 26372001 26396000 0 0 Deletion 23999 LOC_Os05g45470 hypothetical protein FN3126-S Chr5 26372001 26396000 0 0 Deletion 23999 LOC_Os05g45480 POEI45 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN3126-S Chr5 26372001 26396000 0 0 Deletion 23999 LOC_Os05g45490 hydrolase, acting on carbon-nitrogen, putative, expressed FN3126-S Chr5 26372001 26396000 0 0 Deletion 23999 LOC_Os05g45500 expressed protein FN3126-S Chr5 26372001 26396000 0 0 Deletion 23999 LOC_Os05g45510 expressed protein FN3126-S Chr5 26372001 26396000 0 0 Deletion 23999 LOC_Os05g45520 expressed protein FN3126-S Chr5 26372001 26396000 0 0 Deletion 23999 LOC_Os05g45530 expressed protein FN3126-S Chr5 26372001 26396000 0 0 Deletion 23999 LOC_Os05g46250 DUF1230 domain containing protein, expressed FN3126-S Chr5 26823001 26861000 0 0 Deletion 37999 LOC_Os05g46260 exostosin, putative, expressed FN3126-S Chr5 26823001 26861000 0 0 Deletion 37999 LOC_Os05g46270 FEN1A - Putative flap endonuclease protein, expressed FN3126-S Chr5 26823001 26861000 0 0 Deletion 37999 LOC_Os05g46280 expressed protein FN3126-S Chr5 26823001 26861000 0 0 Deletion 37999 LOC_Os05g46290 T-complex protein, putative, expressed FN3126-S Chr5 26823001 26861000 0 0 Deletion 37999 LOC_Os05g46300 OsFBX172 - F-box domain containing protein, expressed FN3126-S Chr5 26823001 26861000 0 0 Deletion 37999 LOC_Os05g46310 expressed protein FN3126-S Chr5 26823001 26861000 0 0 Deletion 37999 LOC_Os05g46320 OsFBX173 - F-box domain containing protein, expressed FN3126-S Chr5 26823001 26861000 0 0 Deletion 37999 LOC_Os05g46330 MYB family transcription factor, putative, expressed FN3126-S Chr5 26823001 26861000 0 0 Deletion 37999 LOC_Os05g46340 expressed protein FN3126-S Chr5 27781001 27801000 0 0 Deletion 19999 LOC_Os05g48470 expressed protein FN3126-S Chr5 27781001 27801000 0 0 Deletion 19999 LOC_Os05g48480 FAD-binding domain-containing protein, putative, expressed FN3126-S Chr5 27781001 27801000 0 0 Deletion 19999 LOC_Os05g48489 expressed protein FN3126-S Chr5 27781001 27801000 0 0 Deletion 19999 LOC_Os05g48500 expressed protein FN3126-S Chr5 27781001 27801000 0 0 Deletion 19999 LOC_Os05g48510 phenylalanyl-tRNA synthetase beta chain, putative, expressed FN3126-S Chr5 27781001 27801000 0 0 Deletion 19999 LOC_Os05g50860 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr5 29170001 29194000 0 0 Deletion 23999 LOC_Os05g50870 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr5 29170001 29194000 0 0 Deletion 23999 LOC_Os05g50880 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr5 29170001 29194000 0 0 Deletion 23999 LOC_Os06g01110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr5 3258001 3277000 0 0 Deletion 18999 LOC_Os05g06370 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 3258001 3277000 0 0 Deletion 18999 LOC_Os05g06380 transferase family protein, putative, expressed FN3126-S Chr5 3258001 3277000 0 0 Deletion 18999 LOC_Os05g06390 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 3258001 3277000 0 0 Deletion 18999 LOC_Os05g06690 HECT-domain domain containing protein, expressed FN3126-S Chr5 4751001 4769000 0 0 Deletion 17999 LOC_Os05g08680 microneme protein Sm70, putative, expressed FN3126-S Chr5 4751001 4769000 0 0 Deletion 17999 LOC_Os05g08694 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 4751001 4769000 0 0 Deletion 17999 LOC_Os05g09130 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr5 5077001 5092000 0 0 Deletion 14999 LOC_Os05g09220 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr5 5153001 5176000 0 0 Deletion 22999 LOC_Os05g09230 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr5 5153001 5176000 0 0 Deletion 22999 LOC_Os05g09240 AGAP006957-PA, putative, expressed FN3126-S Chr5 5153001 5176000 0 0 Deletion 22999 LOC_Os05g09250 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 5153001 5176000 0 0 Deletion 22999 LOC_Os05g09260 retrotransposon protein, putative, unclassified FN3126-S Chr5 5153001 5176000 0 0 Deletion 22999 LOC_Os05g09270 retrotransposon protein, putative, Ty1-copia subclass FN3126-S Chr5 5153001 5176000 0 0 Deletion 22999 LOC_Os05g10380 RWP-RK, putative, expressed FN3126-S Chr5 5656001 5696000 0 0 Deletion 39999 LOC_Os05g10390 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr5 5656001 5696000 0 0 Deletion 39999 LOC_Os05g10400 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr5 5656001 5696000 0 0 Deletion 39999 LOC_Os05g10414 expressed protein FN3126-S Chr5 5656001 5696000 0 0 Deletion 39999 LOC_Os05g10420 expressed protein FN3126-S Chr5 5656001 5696000 0 0 Deletion 39999 LOC_Os05g10430 hypothetical protein FN3126-S Chr5 5656001 5696000 0 0 Deletion 39999 LOC_Os05g10440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr5 5656001 5696000 0 0 Deletion 39999 LOC_Os05g10450 expressed protein FN3126-S Chr5 5656001 5696000 0 0 Deletion 39999 LOC_Os05g10460 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr5 5656001 5696000 0 0 Deletion 39999 LOC_Os05g10470 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr5 5656001 5696000 0 0 Deletion 39999 LOC_Os05g10660 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr5 5719228 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g10520 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 5825001 5841000 0 0 Deletion 15999 LOC_Os05g10660 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr5 5937001 5955000 0 0 Deletion 17999 LOC_Os05g10780 aminotransferase, classes I and II, domain containing protein, expressed FN3126-S Chr5 5937001 5955000 0 0 Deletion 17999 LOC_Os05g11580 expressed protein FN3126-S Chr5 6552001 6580000 0 0 Deletion 27999 LOC_Os05g11580 expressed protein FN3126-S Chr5 6552001 6580000 0 0 Deletion 27999 LOC_Os05g11590 expressed protein FN3126-S Chr5 6552001 6580000 0 0 Deletion 27999 LOC_Os05g11600 expressed protein FN3126-S Chr5 6552001 6580000 0 0 Deletion 27999 LOC_Os05g11610 expressed protein FN3126-S Chr5 6666001 6703000 0 0 Deletion 36999 LOC_Os05g11750 protein kinase, putative, expressed FN3126-S Chr5 6666001 6703000 0 0 Deletion 36999 LOC_Os05g11760 hypothetical protein FN3126-S Chr5 6666001 6703000 0 0 Deletion 36999 LOC_Os05g11770 ulp1 protease family protein, putative, expressed FN3126-S Chr5 6666001 6703000 0 0 Deletion 36999 LOC_Os05g11780 mitochondrial carrier protein, putative, expressed FN3126-S Chr5 6666001 6703000 0 0 Deletion 36999 LOC_Os05g11790 CAMK_KIN1/SNF1/Nim1_like.19 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN3126-S Chr5 7046001 7092000 0 0 Deletion 45999 LOC_Os05g12290 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 7046001 7092000 0 0 Deletion 45999 LOC_Os05g12300 expressed protein FN3126-S Chr5 7046001 7092000 0 0 Deletion 45999 LOC_Os05g12310 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 7046001 7092000 0 0 Deletion 45999 LOC_Os05g12320 nodulin MtN3 family protein, putative, expressed FN3126-S Chr5 7046001 7092000 0 0 Deletion 45999 LOC_Os05g12330 uncharacterized protein KIAA1310, putative, expressed FN3126-S Chr5 7046001 7092000 0 0 Deletion 45999 LOC_Os05g12340 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 7870001 7894000 0 0 Deletion 23999 LOC_Os05g14100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr5 7870001 7894000 0 0 Deletion 23999 LOC_Os05g14110 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 7870001 7894000 0 0 Deletion 23999 LOC_Os05g14120 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 7870001 7894000 0 0 Deletion 23999 LOC_Os05g14130 ZOS5-05 - C2H2 zinc finger protein, expressed FN3126-S Chr5 8158687 8158688 0 0 Deletion 1 upstream_gene_variant HET FN3126-S Chr5 8225001 8256000 0 0 Deletion 30999 LOC_Os05g14540 hypothetical protein FN3126-S Chr5 8405001 8419000 0 0 Deletion 13999 LOC_Os05g14810 retrotransposon protein, putative, Ty1-copia subclass FN3126-S Chr5 8405001 8419000 0 0 Deletion 13999 LOC_Os05g15030 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 8521001 8539000 0 0 Deletion 17999 LOC_Os05g15040 NB-ARC domain containing protein, expressed FN3126-S Chr5 8521001 8539000 0 0 Deletion 17999 LOC_Os05g15950 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 9004001 9032000 0 0 Deletion 27999 LOC_Os05g15960 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 9004001 9032000 0 0 Deletion 27999 LOC_Os05g15970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr5 9004001 9032000 0 0 Deletion 27999 LOC_Os05g15980 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr5 9004001 9032000 0 0 Deletion 27999 LOC_Os05g15990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr5 9196001 9250000 0 0 Deletion 53999 LOC_Os05g16260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr5 9196001 9250000 0 0 Deletion 53999 LOC_Os05g16270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr5 9196001 9250000 0 0 Deletion 53999 LOC_Os05g16280 transposon protein, putative, unclassified, expressed FN3126-S Chr5 9196001 9250000 0 0 Deletion 53999 LOC_Os05g16290 transposon protein, putative, unclassified, expressed FN3126-S Chr5 9196001 9250000 0 0 Deletion 53999 LOC_Os05g16300 expressed protein FN3126-S Chr5 9196001 9250000 0 0 Deletion 53999 LOC_Os05g16315 translation initiation factor IF-2, putative, expressed FN3126-S Chr5 9196001 9250000 0 0 Deletion 53999 LOC_Os05g16320 expressed protein FN3126-S Chr5 9196001 9250000 0 0 Deletion 53999 LOC_Os05g16330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr5 9712001 9750000 0 0 Deletion 37999 LOC_Os05g17020 expressed protein FN3126-S Chr5 9712001 9750000 0 0 Deletion 37999 LOC_Os05g17030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr5 9712001 9750000 0 0 Deletion 37999 LOC_Os05g17040 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 9712001 9750000 0 0 Deletion 37999 LOC_Os05g17050 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr5 9712001 9750000 0 0 Deletion 37999 LOC_Os05g17060 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr5 9712001 9750000 0 0 Deletion 37999 LOC_Os05g17070 retrotransposon protein, putative, unclassified FN3126-S Chr5 9778001 9796000 0 0 Deletion 17999 LOC_Os05g17120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr6 107001 121000 0 0 Deletion 13999 LOC_Os06g01120 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 107001 121000 0 0 Deletion 13999 LOC_Os06g01130 retrotransposon protein, putative, unclassified FN3126-S Chr6 107001 121000 0 0 Deletion 13999 LOC_Os06g02144 6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed FN3126-S Chr6 1151001 1165000 0 0 Deletion 13999 LOC_Os06g03130 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr6 1151001 1165000 0 0 Deletion 13999 LOC_Os06g05350 whirly transcription factor domain containing protein, expressed FN3126-S Chr6 11839001 11860000 0 0 Deletion 20999 LOC_Os06g20570 glycosyltransferase, putative, expressed FN3126-S Chr6 11839001 11860000 0 0 Deletion 20999 LOC_Os06g20580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr6 11839001 11860000 0 0 Deletion 20999 LOC_Os06g20590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr6 11839001 11860000 0 0 Deletion 20999 LOC_Os06g20600 retrotransposon protein, putative, unclassified FN3126-S Chr6 11895001 11906000 0 0 Deletion 10999 LOC_Os06g20660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr6 11895001 11906000 0 0 Deletion 10999 LOC_Os06g20720 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr6 12002458 12002459 0 0 Deletion 1 intron_variant HET FN3126-S Chr6 12051001 12074000 0 0 Deletion 22999 LOC_Os06g20870 pentatricopeptide repeat protein PPR1106-17, putative, expressed FN3126-S Chr6 12051001 12074000 0 0 Deletion 22999 LOC_Os06g20879 expressed protein FN3126-S Chr6 12051001 12074000 0 0 Deletion 22999 LOC_Os06g20960 SAM dependent carboxyl methyltransferase, putative, expressed FN3126-S Chr6 12114001 12174000 0 0 Deletion 59999 LOC_Os06g20960 SAM dependent carboxyl methyltransferase, putative, expressed FN3126-S Chr6 12114001 12174000 0 0 Deletion 59999 LOC_Os06g20970 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr6 12114001 12174000 0 0 Deletion 59999 LOC_Os06g20980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr6 12114001 12174000 0 0 Deletion 59999 LOC_Os06g20990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr6 12114001 12174000 0 0 Deletion 59999 LOC_Os06g21000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr6 12114001 12174000 0 0 Deletion 59999 LOC_Os06g21010 transposon protein, putative, unclassified, expressed FN3126-S Chr6 12114001 12174000 0 0 Deletion 59999 LOC_Os06g21020 methyltransferase, putative, expressed FN3126-S Chr6 12114001 12174000 0 0 Deletion 59999 LOC_Os06g21030 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr6 12114001 12174000 0 0 Deletion 59999 LOC_Os06g21040 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr6 12114001 12174000 0 0 Deletion 59999 LOC_Os06g21050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr6 12114001 12174000 0 0 Deletion 59999 LOC_Os06g21059 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr6 12114001 12174000 0 0 Deletion 59999 LOC_Os06g21068 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr6 12216316 12216319 0 0 Deletion 3 downstream_gene_variant HET FN3126-S Chr6 12282001 12318000 0 0 Deletion 35999 LOC_Os06g21250 glycine rich protein family protein, putative, expressed FN3126-S Chr6 12282001 12318000 0 0 Deletion 35999 LOC_Os06g21260 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 12282001 12318000 0 0 Deletion 35999 LOC_Os06g21270 glycine rich protein family protein, putative, expressed FN3126-S Chr6 12282001 12318000 0 0 Deletion 35999 LOC_Os06g21280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr6 12282001 12318000 0 0 Deletion 35999 LOC_Os06g21290 expressed protein FN3126-S Chr6 12282001 12318000 0 0 Deletion 35999 LOC_Os06g21300 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr6 12282001 12318000 0 0 Deletion 35999 LOC_Os06g21310 glycine-rich cell wall structural protein precursor, putative, expressed FN3126-S Chr6 12282001 12318000 0 0 Deletion 35999 LOC_Os06g21320 hypothetical protein FN3126-S Chr6 13030001 13093000 0 0 Deletion 62999 LOC_Os06g22420 ZOS6-04 - C2H2 zinc finger protein, expressed FN3126-S Chr6 13030001 13093000 0 0 Deletion 62999 LOC_Os06g22430 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr6 13030001 13093000 0 0 Deletion 62999 LOC_Os06g22440 SAM dependent carboxyl methyltransferase, putative, expressed FN3126-S Chr6 13030001 13093000 0 0 Deletion 62999 LOC_Os06g22450 expressed protein FN3126-S Chr6 13030001 13093000 0 0 Deletion 62999 LOC_Os06g22460 disease resistance protein RPM1, putative, expressed FN3126-S Chr6 13030001 13093000 0 0 Deletion 62999 LOC_Os06g22470 hypothetical protein FN3126-S Chr6 13030001 13093000 0 0 Deletion 62999 LOC_Os06g22480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr6 13030001 13093000 0 0 Deletion 62999 LOC_Os06g22490 sphingolipid C4-hydroxylase SUR2, putative, expressed FN3126-S Chr6 13030001 13093000 0 0 Deletion 62999 LOC_Os06g22500 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 13030001 13093000 0 0 Deletion 62999 LOC_Os06g22510 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr6 13030001 13093000 0 0 Deletion 62999 LOC_Os06g22520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr6 13169001 13183000 0 0 Deletion 13999 LOC_Os06g22654 expressed protein FN3126-S Chr6 13169001 13183000 0 0 Deletion 13999 LOC_Os06g22660 EMB1303, putative, expressed FN3126-S Chr6 13169001 13183000 0 0 Deletion 13999 LOC_Os06g22670 tesmin/TSO1-like CXC domain containing protein, expressed FN3126-S Chr6 13169001 13183000 0 0 Deletion 13999 LOC_Os06g22770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr6 13256001 13272000 0 0 Deletion 15999 LOC_Os06g22770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr6 13256001 13272000 0 0 Deletion 15999 LOC_Os06g22780 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr6 13256001 13272000 0 0 Deletion 15999 LOC_Os06g22790 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 13569001 13578000 0 0 Deletion 8999 LOC_Os06g23250 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr6 13569001 13578000 0 0 Deletion 8999 LOC_Os06g23260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr6 13569001 13578000 0 0 Deletion 8999 LOC_Os06g23340 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr6 13630001 13649000 0 0 Deletion 18999 LOC_Os06g23360 LTPL70 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3126-S Chr6 13630001 13649000 0 0 Deletion 18999 LOC_Os06g23370 expressed protein FN3126-S Chr6 13630001 13649000 0 0 Deletion 18999 LOC_Os06g23380 IQ calmodulin-binding motif family protein, putative, expressed FN3126-S Chr6 13630001 13649000 0 0 Deletion 18999 LOC_Os06g23460 KH domain containing protein, putative, expressed FN3126-S Chr6 13715001 13726000 0 0 Deletion 10999 LOC_Os06g23530 pre-mRNA-splicing factor ATP-dependent RNA helicase, putative, expressed FN3126-S Chr6 13715001 13726000 0 0 Deletion 10999 LOC_Os06g23600 expressed protein FN3126-S Chr6 13715301 Chr1 18683563 0 Translocation 0 FN3126-S Chr6 13834001 13870000 0 0 Deletion 35999 LOC_Os06g23684 tyrosine aminotransferase, putative, expressed FN3126-S Chr6 13834001 13870000 0 0 Deletion 35999 LOC_Os06g23710 retrotransposon protein, putative, unclassified FN3126-S Chr6 13834001 13870000 0 0 Deletion 35999 LOC_Os06g23720 retrotransposon protein, putative, unclassified FN3126-S Chr6 13834001 13870000 0 0 Deletion 35999 LOC_Os06g23730 retrotransposon, putative, centromere-specific FN3126-S Chr6 13927001 13950000 0 0 Deletion 22999 LOC_Os06g23840 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 13927001 13950000 0 0 Deletion 22999 LOC_Os06g23850 expressed protein FN3126-S Chr6 13927001 13950000 0 0 Deletion 22999 LOC_Os06g23860 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr6 13927001 13950000 0 0 Deletion 22999 LOC_Os06g23870 acyl-CoA dehydrogenase domain protein, putative, expressed FN3126-S Chr6 14123001 14179000 0 0 Deletion 55999 LOC_Os06g24150 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr6 14123001 14179000 0 0 Deletion 55999 LOC_Os06g24160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr6 14123001 14179000 0 0 Deletion 55999 LOC_Os06g24170 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr6 14123001 14179000 0 0 Deletion 55999 LOC_Os06g24180 cytochrome P450 84A1, putative, expressed FN3126-S Chr6 14123001 14179000 0 0 Deletion 55999 LOC_Os06g24190 expressed protein FN3126-S Chr6 14123001 14179000 0 0 Deletion 55999 LOC_Os06g24200 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr6 14123001 14179000 0 0 Deletion 55999 LOC_Os06g24210 expressed protein FN3126-S Chr6 14230001 14258000 0 0 Deletion 27999 LOC_Os06g24360 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr6 14230001 14258000 0 0 Deletion 27999 LOC_Os06g24380 retrotransposon, putative, centromere-specific, expressed FN3126-S Chr6 14275001 14338000 0 0 Deletion 62999 LOC_Os06g24390 expressed protein FN3126-S Chr6 14275001 14338000 0 0 Deletion 62999 LOC_Os06g24404 GDSL-like lipase/acylhydrolase, putative, expressed FN3126-S Chr6 14275001 14338000 0 0 Deletion 62999 LOC_Os06g24420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr6 14275001 14338000 0 0 Deletion 62999 LOC_Os06g24430 expressed protein FN3126-S Chr6 14275001 14338000 0 0 Deletion 62999 LOC_Os06g24440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr6 14275001 14338000 0 0 Deletion 62999 LOC_Os06g24450 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr6 14275001 14338000 0 0 Deletion 62999 LOC_Os06g24460 pleiotropic drug resistance protein 2, putative, expressed FN3126-S Chr6 14275001 14338000 0 0 Deletion 62999 LOC_Os06g24470 expressed protein FN3126-S Chr6 14425001 14447000 0 0 Deletion 21999 LOC_Os06g24610 hypothetical protein FN3126-S Chr6 14425001 14447000 0 0 Deletion 21999 LOC_Os06g25140 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr6 14522178 14901827 0 0 Inversion 379649 FN3126-S Chr6 14707001 14729000 0 0 Deletion 21999 LOC_Os06g25150 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 14707001 14729000 0 0 Deletion 21999 LOC_Os06g25160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr6 14707001 14729000 0 0 Deletion 21999 LOC_Os06g25170 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 14707001 14729000 0 0 Deletion 21999 LOC_Os06g25290 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr6 14804001 14853000 0 0 Deletion 48999 LOC_Os06g25294 60S ribosomal protein L18a-1, putative, expressed FN3126-S Chr6 14804001 14853000 0 0 Deletion 48999 LOC_Os06g25300 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr6 14804001 14853000 0 0 Deletion 48999 LOC_Os06g25310 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr6 14804001 14853000 0 0 Deletion 48999 LOC_Os06g25320 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr6 14804001 14853000 0 0 Deletion 48999 LOC_Os06g25330 retrotransposon protein, putative, unclassified FN3126-S Chr6 14804001 14853000 0 0 Deletion 48999 LOC_Os06g25340 hypothetical protein FN3126-S Chr6 14804001 14853000 0 0 Deletion 48999 LOC_Os06g25350 retrotransposon protein, putative, unclassified FN3126-S Chr6 14804001 14853000 0 0 Deletion 48999 LOC_Os06g25460 expressed protein FN3126-S Chr6 14888001 14939000 0 0 Deletion 50999 LOC_Os06g25470 expressed protein FN3126-S Chr6 14888001 14939000 0 0 Deletion 50999 LOC_Os06g25500 expressed protein FN3126-S Chr6 14888001 14939000 0 0 Deletion 50999 LOC_Os06g25510 expressed protein FN3126-S Chr6 14888001 14939000 0 0 Deletion 50999 LOC_Os06g25520 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 14888001 14939000 0 0 Deletion 50999 LOC_Os06g25530 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 14888001 14939000 0 0 Deletion 50999 LOC_Os06g25540 expressed protein FN3126-S Chr6 14888001 14939000 0 0 Deletion 50999 LOC_Os06g25550 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 15096001 15122000 0 0 Deletion 25999 LOC_Os06g25850 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 15096001 15122000 0 0 Deletion 25999 LOC_Os06g25860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr6 15096001 15122000 0 0 Deletion 25999 LOC_Os06g25870 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 15096001 15122000 0 0 Deletion 25999 LOC_Os06g25880 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 15142001 15159000 0 0 Deletion 16999 LOC_Os06g25890 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 15142001 15159000 0 0 Deletion 16999 LOC_Os06g25900 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 15743001 15771000 0 0 Deletion 27999 LOC_Os06g27810 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 15743001 15771000 0 0 Deletion 27999 LOC_Os06g27820 expressed protein FN3126-S Chr6 15743001 15771000 0 0 Deletion 27999 LOC_Os06g27830 expressed protein FN3126-S Chr6 15743001 15771000 0 0 Deletion 27999 LOC_Os06g27840 retrotransposon protein, putative, LINE subclass, expressed FN3126-S Chr6 16078001 16098000 0 0 Deletion 19999 LOC_Os06g28320 retrotransposon, putative, centromere-specific FN3126-S Chr6 16078001 16098000 0 0 Deletion 19999 LOC_Os06g28330 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 16078001 16098000 0 0 Deletion 19999 LOC_Os06g28660 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 16308001 16332000 0 0 Deletion 23999 LOC_Os06g28670 polygalacturonase, putative, expressed FN3126-S Chr6 16308001 16332000 0 0 Deletion 23999 LOC_Os06g29000 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 16530001 16621000 0 0 Deletion 90999 LOC_Os06g29010 expressed protein FN3126-S Chr6 16530001 16621000 0 0 Deletion 90999 LOC_Os06g29020 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 16530001 16621000 0 0 Deletion 90999 LOC_Os06g29030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr6 16530001 16621000 0 0 Deletion 90999 LOC_Os06g29040 retrotransposon protein, putative, unclassified FN3126-S Chr6 16530001 16621000 0 0 Deletion 90999 LOC_Os06g29050 transposon protein, putative, unclassified, expressed FN3126-S Chr6 16530001 16621000 0 0 Deletion 90999 LOC_Os06g29060 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 16530001 16621000 0 0 Deletion 90999 LOC_Os06g29070 retrotransposon protein, putative, unclassified FN3126-S Chr6 16530001 16621000 0 0 Deletion 90999 LOC_Os06g29080 expressed protein FN3126-S Chr6 16530001 16621000 0 0 Deletion 90999 LOC_Os06g29100 expressed protein FN3126-S Chr6 16530001 16621000 0 0 Deletion 90999 LOC_Os06g29110 MLO domain containing protein, putative, expressed FN3126-S Chr6 16530001 16621000 0 0 Deletion 90999 LOC_Os06g29120 STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed FN3126-S Chr6 16864001 16879000 0 0 Deletion 14999 LOC_Os06g29450 expressed protein FN3126-S Chr6 16864001 16879000 0 0 Deletion 14999 LOC_Os06g29490 expressed protein FN3126-S Chr6 16993001 17006000 0 0 Deletion 12999 LOC_Os06g29640 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 16993001 17006000 0 0 Deletion 12999 LOC_Os06g29650 CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1, putative, expressed FN3126-S Chr6 16993001 17006000 0 0 Deletion 12999 LOC_Os06g29679 expressed protein FN3126-S Chr6 17036001 17067000 0 0 Deletion 30999 LOC_Os06g29700 OsFBD11 - F-box and FBD domain containing protein, expressed FN3126-S Chr6 17036001 17067000 0 0 Deletion 30999 LOC_Os06g29710 OsFBD12 - F-box and FBD domain containing protein, expressed FN3126-S Chr6 17036001 17067000 0 0 Deletion 30999 LOC_Os06g29730 RALFL28 - Rapid ALkalinization Factor RALF family protein precursor, expressed FN3126-S Chr6 17036001 17067000 0 0 Deletion 30999 LOC_Os06g29900 integral membrane protein, putative, expressed FN3126-S Chr6 17037014 17037014 0 0 Insertion 1 downstream_gene_variant HET FN3126-S Chr6 17221001 17236000 0 0 Deletion 14999 LOC_Os06g29910 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 17221001 17236000 0 0 Deletion 14999 LOC_Os06g29920 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 17221001 17236000 0 0 Deletion 14999 LOC_Os06g29930 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 17221001 17236000 0 0 Deletion 14999 LOC_Os06g30060 expressed protein FN3126-S Chr6 17230264 G-A 0 0 Single Base Substitution 0 INTRON HET FN3126-S Chr6 17315001 17336000 0 0 Deletion 20999 LOC_Os06g30060 expressed protein FN3126-S Chr6 17315001 17336000 0 0 Deletion 20999 LOC_Os06g30070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr6 17315001 17336000 0 0 Deletion 20999 LOC_Os06g30080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr6 19793001 19810000 0 0 Deletion 16999 LOC_Os06g34000 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr6 19793001 19810000 0 0 Deletion 16999 LOC_Os06g34010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr6 19793001 19810000 0 0 Deletion 16999 LOC_Os06g34140 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr6 19873001 19895000 0 0 Deletion 21999 LOC_Os06g34140 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr6 19873001 19895000 0 0 Deletion 21999 LOC_Os06g34150 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr6 19930001 20011000 0 0 Deletion 80999 LOC_Os06g34240 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 19930001 20011000 0 0 Deletion 80999 LOC_Os06g34250 expressed protein FN3126-S Chr6 19930001 20011000 0 0 Deletion 80999 LOC_Os06g34260 hypothetical protein FN3126-S Chr6 19930001 20011000 0 0 Deletion 80999 LOC_Os06g34270 hypothetical protein FN3126-S Chr6 19930001 20011000 0 0 Deletion 80999 LOC_Os06g34280 expressed protein FN3126-S Chr6 19930001 20011000 0 0 Deletion 80999 LOC_Os06g34290 retrotransposon protein, putative, unclassified FN3126-S Chr6 19930001 20011000 0 0 Deletion 80999 LOC_Os06g34300 retrotransposon, putative, centromere-specific, expressed FN3126-S Chr6 19930001 20011000 0 0 Deletion 80999 LOC_Os06g34310 retrotransposon protein, putative, unclassified FN3126-S Chr6 19930001 20011000 0 0 Deletion 80999 LOC_Os06g34320 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 19930001 20011000 0 0 Deletion 80999 LOC_Os06g34330 expressed protein FN3126-S Chr6 19930001 20011000 0 0 Deletion 80999 LOC_Os06g34340 expressed protein FN3126-S Chr6 19930001 20011000 0 0 Deletion 80999 LOC_Os06g34350 expressed protein FN3126-S Chr6 19930001 20011000 0 0 Deletion 80999 LOC_Os06g34360 zinc finger, C3HC4 type domain containing protein, expressed FN3126-S Chr6 19930001 20011000 0 0 Deletion 80999 LOC_Os06g34370 transposon protein, putative, Pong sub-class, expressed FN3126-S Chr6 19930001 20011000 0 0 Deletion 80999 LOC_Os06g34380 transposon protein, putative, Pong sub-class FN3126-S Chr6 19930001 20011000 0 0 Deletion 80999 LOC_Os06g34390 zinc finger, C3HC4 type domain containing protein, expressed FN3126-S Chr6 19930001 20011000 0 0 Deletion 80999 LOC_Os06g35970 meiosis 5, putative, expressed FN3126-S Chr6 21004001 21024000 0 0 Deletion 19999 LOC_Os06g35980 expressed protein FN3126-S Chr6 21004001 21024000 0 0 Deletion 19999 LOC_Os06g35990 expressed protein FN3126-S Chr6 21004001 21024000 0 0 Deletion 19999 LOC_Os06g36270 receptor-like protein kinase 5 precursor, putative, expressed FN3126-S Chr6 21261001 21294000 0 0 Deletion 32999 LOC_Os06g36290 retrotransposon protein, putative, Ty1-copia subclass FN3126-S Chr6 21261001 21294000 0 0 Deletion 32999 LOC_Os06g36310 receptor-like protein kinase 5 precursor, putative, expressed FN3126-S Chr6 21261001 21294000 0 0 Deletion 32999 LOC_Os06g36320 receptor-like protein kinase 5 precursor, putative, expressed FN3126-S Chr6 21261001 21294000 0 0 Deletion 32999 LOC_Os06g37470 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 21857133 21857133 0 0 Insertion 1 upstream_gene_variant HET FN3126-S Chr6 21857896 21857897 0 0 Deletion 1 upstream_gene_variant HET FN3126-S Chr6 22169001 22188000 0 0 Deletion 18999 LOC_Os06g37490 expressed protein FN3126-S Chr6 22169001 22188000 0 0 Deletion 18999 LOC_Os06g39290 expressed protein FN3126-S Chr6 22508734 22508804 0 0 Deletion 70 upstream_gene_variant HET FN3126-S Chr6 23316001 23336000 0 0 Deletion 19999 LOC_Os06g39300 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 23316001 23336000 0 0 Deletion 19999 LOC_Os06g39310 retrotransposon protein, putative, unclassified FN3126-S Chr6 23316001 23336000 0 0 Deletion 19999 LOC_Os06g39320 retrotransposon protein, putative, unclassified FN3126-S Chr6 23316001 23336000 0 0 Deletion 19999 LOC_Os06g39330 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed FN3126-S Chr6 23918001 23940000 0 0 Deletion 21999 LOC_Os06g40180 phospholipase D, putative, expressed FN3126-S Chr6 23918001 23940000 0 0 Deletion 21999 LOC_Os06g40190 phospholipase D, putative, expressed FN3126-S Chr6 23918001 23940000 0 0 Deletion 21999 LOC_Os06g40200 calcium-binding mitochondrial carrier CBG00135, putative, expressed FN3126-S Chr6 2403001 2420000 0 0 Deletion 16999 LOC_Os06g05355 expressed protein FN3126-S Chr6 2403001 2420000 0 0 Deletion 16999 LOC_Os06g05359 NBS-LRR disease resistance protein, putative, expressed FN3126-S Chr6 2403001 2420000 0 0 Deletion 16999 LOC_Os06g05368 expressed protein FN3126-S Chr6 2403001 2420000 0 0 Deletion 16999 LOC_Os06g05980 transporter family protein, putative, expressed FN3126-S Chr6 24418001 24429000 0 0 Deletion 10999 LOC_Os06g41150 expressed protein FN3126-S Chr6 24644001 24664000 0 0 Deletion 19999 LOC_Os06g41200 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr6 24644001 24664000 0 0 Deletion 19999 LOC_Os06g41880 OsSub51 - Putative Subtilisin homologue, expressed FN3126-S Chr6 24677958 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3126-S Chr6 25442001 25489000 0 0 Deletion 46999 LOC_Os06g42360 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 25442001 25489000 0 0 Deletion 46999 LOC_Os06g42370 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 25442001 25489000 0 0 Deletion 46999 LOC_Os06g42380 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 25442001 25489000 0 0 Deletion 46999 LOC_Os06g42390 expressed protein FN3126-S Chr6 25442001 25489000 0 0 Deletion 46999 LOC_Os06g42400 transposon protein, putative, unclassified, expressed FN3126-S Chr6 25442001 25489000 0 0 Deletion 46999 LOC_Os06g43750 expressed protein FN3126-S Chr6 26327001 26348000 0 0 Deletion 20999 LOC_Os06g43760 tRNA synthetase class I, putative, expressed FN3126-S Chr6 26327001 26348000 0 0 Deletion 20999 LOC_Os06g43770 expressed protein FN3126-S Chr6 26327001 26348000 0 0 Deletion 20999 LOC_Os06g44730 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 27001001 27010000 0 0 Deletion 8999 LOC_Os06g44740 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 27001001 27010000 0 0 Deletion 8999 LOC_Os06g45140 bZIP transcription factor domain containing protein, expressed FN3126-S Chr6 27305001 27315000 0 0 Deletion 9999 LOC_Os06g45170 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 27305001 27315000 0 0 Deletion 9999 LOC_Os06g45720 BTB/POZ domain containing protein, expressed FN3126-S Chr6 27681001 27699000 0 0 Deletion 17999 LOC_Os06g45730 MBTB11 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3126-S Chr6 27681001 27699000 0 0 Deletion 17999 LOC_Os06g45740 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 27681001 27699000 0 0 Deletion 17999 LOC_Os06g45750 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 27681001 27699000 0 0 Deletion 17999 LOC_Os06g45760 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 27681001 27699000 0 0 Deletion 17999 LOC_Os06g47140 expressed protein FN3126-S Chr6 30018549 30018553 0 0 Deletion 4 frameshift_variant HET LOC_Os06g49570 expressed protein FN3126-S Chr6 30840001 30865000 0 0 Deletion 24999 LOC_Os06g50970 expressed protein FN3126-S Chr6 30840001 30865000 0 0 Deletion 24999 LOC_Os06g50980 expressed protein FN3126-S Chr6 30840001 30865000 0 0 Deletion 24999 LOC_Os06g50990 expressed protein FN3126-S Chr6 30840001 30865000 0 0 Deletion 24999 LOC_Os07g01550 leucine rich repeat domain containing protein, putative, expressed FN3126-S Chr6 3240001 3251000 0 0 Deletion 10999 LOC_Os06g06870 zinc finger protein, putative, expressed FN3126-S Chr6 3240001 3251000 0 0 Deletion 10999 LOC_Os06g07690 expressed protein FN3126-S Chr6 3717001 3763000 0 0 Deletion 45999 LOC_Os06g07700 expressed protein FN3126-S Chr6 3717001 3763000 0 0 Deletion 45999 LOC_Os06g07710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr6 3717001 3763000 0 0 Deletion 45999 LOC_Os06g07720 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr6 3717001 3763000 0 0 Deletion 45999 LOC_Os06g07730 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 3717001 3763000 0 0 Deletion 45999 LOC_Os06g07740 myb-like DNA-binding domain, SHAQKYF class family protein, expressed FN3126-S Chr6 3717001 3763000 0 0 Deletion 45999 LOC_Os06g07750 expressed protein FN3126-S Chr6 3717001 3763000 0 0 Deletion 45999 LOC_Os06g07760 sulfiredoxin-1, putative, expressed FN3126-S Chr6 3717001 3763000 0 0 Deletion 45999 LOC_Os06g07770 expressed protein FN3126-S Chr6 3717001 3763000 0 0 Deletion 45999 LOC_Os06g08730 expressed protein FN3126-S Chr6 5379001 5394000 0 0 Deletion 14999 LOC_Os06g10470 ZOS6-02 - C2H2 zinc finger protein, expressed FN3126-S Chr6 5379001 5394000 0 0 Deletion 14999 LOC_Os06g10480 expressed protein FN3126-S Chr6 5379001 5394000 0 0 Deletion 14999 LOC_Os06g10780 AP2 domain containing protein, expressed FN3126-S Chr6 5988001 6002000 0 0 Deletion 13999 FN3126-S Chr6 6032001 6043000 0 0 Deletion 10999 LOC_Os06g11440 transposon protein, putative, Mutator sub-class, expressed FN3126-S Chr6 6032001 6043000 0 0 Deletion 10999 LOC_Os06g11880 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr6 645001 657000 0 0 Deletion 11999 LOC_Os06g02160 AMP-binding enzyme family protein, expressed FN3126-S Chr6 645001 657000 0 0 Deletion 11999 LOC_Os06g03110 expressed protein FN3126-S Chr6 7709001 7737000 0 0 Deletion 27999 LOC_Os06g13880 expressed protein FN3126-S Chr6 7709001 7737000 0 0 Deletion 27999 LOC_Os06g13890 expressed protein FN3126-S Chr6 7709001 7737000 0 0 Deletion 27999 LOC_Os06g14120 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr6 7976001 8008000 0 0 Deletion 31999 LOC_Os06g14300 transposon protein, putative, unclassified FN3126-S Chr6 7976001 8008000 0 0 Deletion 31999 LOC_Os06g14310 potassium channel AKT1, putative, expressed FN3126-S Chr6 7976001 8008000 0 0 Deletion 31999 LOC_Os06g14324 caleosin related protein, putative, expressed FN3126-S Chr6 7976001 8008000 0 0 Deletion 31999 LOC_Os06g14340 hypothetical protein FN3126-S Chr6 7976001 8008000 0 0 Deletion 31999 LOC_Os06g14350 caleosin related protein, putative, expressed FN3126-S Chr6 7976001 8008000 0 0 Deletion 31999 LOC_Os06g15010 conserved hypothetical protein FN3126-S Chr6 8503001 8546000 0 0 Deletion 42999 LOC_Os06g15020 3-ketoacyl-CoA synthase, putative, expressed FN3126-S Chr6 8503001 8546000 0 0 Deletion 42999 LOC_Os06g15030 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr6 8503001 8546000 0 0 Deletion 42999 LOC_Os06g15040 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr6 8503001 8546000 0 0 Deletion 42999 LOC_Os06g15050 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr6 8503001 8546000 0 0 Deletion 42999 LOC_Os06g15060 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr6 8503001 8546000 0 0 Deletion 42999 LOC_Os06g15070 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr6 8503001 8546000 0 0 Deletion 42999 LOC_Os06g15440 expressed protein FN3126-S Chr6 8769001 8794000 0 0 Deletion 24999 LOC_Os06g15450 retrotransposon protein, putative, Ty1-copia subclass FN3126-S Chr6 8769001 8794000 0 0 Deletion 24999 LOC_Os06g15460 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr6 8769001 8794000 0 0 Deletion 24999 LOC_Os06g15470 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr6 8769001 8794000 0 0 Deletion 24999 LOC_Os06g15480 transcription factor, putative, expressed FN3126-S Chr6 8769001 8794000 0 0 Deletion 24999 LOC_Os06g15490 expressed protein FN3126-S Chr6 8769001 8794000 0 0 Deletion 24999 LOC_Os06g15800 expressed protein FN3126-S Chr6 8993001 9003000 0 0 Deletion 9999 LOC_Os06g15850 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr6 9111001 9162000 0 0 Deletion 50999 LOC_Os06g16020 expressed protein FN3126-S Chr6 9111001 9162000 0 0 Deletion 50999 LOC_Os06g16030 amidase family protein, putative, expressed FN3126-S Chr6 9111001 9162000 0 0 Deletion 50999 LOC_Os06g16040 expressed protein FN3126-S Chr6 9111001 9162000 0 0 Deletion 50999 LOC_Os06g16050 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr6 9111001 9162000 0 0 Deletion 50999 LOC_Os06g16060 zinc finger, C3HC4 type domain containing protein, expressed FN3126-S Chr6 9111001 9162000 0 0 Deletion 50999 LOC_Os06g16070 receptor-like protein kinase 2 precursor, putative, expressed FN3126-S Chr6 9111001 9162000 0 0 Deletion 50999 LOC_Os06g16080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr6 9111001 9162000 0 0 Deletion 50999 LOC_Os06g16090 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr6 9261001 9278000 0 0 Deletion 16999 LOC_Os06g16270 heat shock factor binding protein 2, putative, expressed FN3126-S Chr6 9261001 9278000 0 0 Deletion 16999 LOC_Os06g16280 expressed protein FN3126-S Chr6 9352429 Chr2 11966171 0 Translocation 0 FN3126-S Chr6 9712001 9745000 0 0 Deletion 32999 LOC_Os06g16780 expressed protein FN3126-S Chr6 9712001 9745000 0 0 Deletion 32999 LOC_Os06g16790 go35 NBS-LRR, putative, expressed FN3126-S Chr6 9712001 9745000 0 0 Deletion 32999 LOC_Os06g16810 polygalacturonase precursor, putative, expressed FN3126-S Chr6 9712001 9745000 0 0 Deletion 32999 LOC_Os06g16820 expressed protein FN3126-S Chr6 9712001 9745000 0 0 Deletion 32999 LOC_Os06g16830 retrotransposon protein, putative, Ty1-copia subclass FN3126-S Chr6 9820001 9852000 0 0 Deletion 31999 LOC_Os06g16960 O-methyltransferase, putative, expressed FN3126-S Chr6 9820001 9852000 0 0 Deletion 31999 LOC_Os06g16970 hypothetical protein FN3126-S Chr6 9820001 9852000 0 0 Deletion 31999 LOC_Os06g16980 DNA topoisomerase I family protein, expressed FN3126-S Chr6 9820001 9852000 0 0 Deletion 31999 LOC_Os06g20570 glycosyltransferase, putative, expressed FN3126-S Chr7 10339001 10367000 0 0 Deletion 27999 LOC_Os07g17500 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr7 10339001 10367000 0 0 Deletion 27999 LOC_Os07g17510 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr7 10339001 10367000 0 0 Deletion 27999 LOC_Os07g17520 expressed protein FN3126-S Chr7 10339001 10367000 0 0 Deletion 27999 LOC_Os07g17530 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr7 10614001 10654000 0 0 Deletion 39999 LOC_Os07g17960 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr7 10614001 10654000 0 0 Deletion 39999 LOC_Os07g17970 AMP-binding domain containing protein, expressed FN3126-S Chr7 10614001 10654000 0 0 Deletion 39999 LOC_Os07g17980 retrotransposon, putative, centromere-specific, expressed FN3126-S Chr7 10614001 10654000 0 0 Deletion 39999 LOC_Os07g17990 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 10614001 10654000 0 0 Deletion 39999 LOC_Os07g18000 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 10614001 10654000 0 0 Deletion 39999 LOC_Os07g18350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 10948001 11081000 0 0 Deletion 132999 LOC_Os07g18510 OsFBLD5 - F-box, LRR and FBD domain containing protein, expressed FN3126-S Chr7 10948001 11081000 0 0 Deletion 132999 LOC_Os07g18520 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr7 10948001 11081000 0 0 Deletion 132999 LOC_Os07g18530 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr7 10948001 11081000 0 0 Deletion 132999 LOC_Os07g18540 ribosomal RNA apurinic site specific lyase, putative, expressed FN3126-S Chr7 10948001 11081000 0 0 Deletion 132999 LOC_Os07g18550 hypothetical protein FN3126-S Chr7 10948001 11081000 0 0 Deletion 132999 LOC_Os07g18560 OsFBLD6 - F-box, LRR and FBD domain containing protein, expressed FN3126-S Chr7 10948001 11081000 0 0 Deletion 132999 LOC_Os07g18570 expressed protein FN3126-S Chr7 10948001 11081000 0 0 Deletion 132999 LOC_Os07g18580 expressed protein FN3126-S Chr7 10948001 11081000 0 0 Deletion 132999 LOC_Os07g18590 expressed protein FN3126-S Chr7 10948001 11081000 0 0 Deletion 132999 LOC_Os07g18600 OsFBL37 - F-box domain and LRR containing protein, expressed FN3126-S Chr7 10948001 11081000 0 0 Deletion 132999 LOC_Os07g18610 OsFBLD7 - F-box, LRR and FBD domain containing protein, expressed FN3126-S Chr7 10948001 11081000 0 0 Deletion 132999 LOC_Os07g18620 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr7 10948001 11081000 0 0 Deletion 132999 LOC_Os07g18630 expressed protein FN3126-S Chr7 10948001 11081000 0 0 Deletion 132999 LOC_Os07g18640 retrotransposon protein, putative, unclassified FN3126-S Chr7 10948001 11081000 0 0 Deletion 132999 LOC_Os07g18660 hypothetical protein FN3126-S Chr7 10948001 11081000 0 0 Deletion 132999 LOC_Os07g18670 expressed protein FN3126-S Chr7 10948001 11081000 0 0 Deletion 132999 LOC_Os07g18680 retrotransposon, putative, centromere-specific, expressed FN3126-S Chr7 10948001 11081000 0 0 Deletion 132999 LOC_Os07g18690 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 10948001 11081000 0 0 Deletion 132999 LOC_Os07g18700 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 10948001 11081000 0 0 Deletion 132999 LOC_Os07g18710 OsFBLD8 - F-box, LRR and FBD domain containing protein, expressed FN3126-S Chr7 10948001 11081000 0 0 Deletion 132999 LOC_Os07g18720 tetratricopeptide repeat containing protein, putative, expressed FN3126-S Chr7 10948001 11081000 0 0 Deletion 132999 LOC_Os07g23220 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 11611713 Chr5 8422024 0 Translocation 0 FN3126-S Chr7 13086001 13118000 0 0 Deletion 31999 LOC_Os07g23230 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 13086001 13118000 0 0 Deletion 31999 LOC_Os07g23244 ribosomal protein L23 family protein, putative, expressed FN3126-S Chr7 13086001 13118000 0 0 Deletion 31999 LOC_Os07g23260 expressed protein FN3126-S Chr7 13086001 13118000 0 0 Deletion 31999 LOC_Os07g23270 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr7 13348001 13375000 0 0 Deletion 26999 LOC_Os07g23620 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr7 13348001 13375000 0 0 Deletion 26999 LOC_Os07g23630 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr7 13348001 13375000 0 0 Deletion 26999 LOC_Os07g23640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 13348001 13375000 0 0 Deletion 26999 LOC_Os07g23660 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 13348001 13375000 0 0 Deletion 26999 LOC_Os07g23670 expressed protein FN3126-S Chr7 13348001 13375000 0 0 Deletion 26999 LOC_Os07g23680 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr7 13348001 13375000 0 0 Deletion 26999 LOC_Os07g23690 root cap protein 1, putative, expressed FN3126-S Chr7 13348001 13375000 0 0 Deletion 26999 LOC_Os07g23850 glycosyl hydrolase, putative, expressed FN3126-S Chr7 13353497 13353499 0 0 Deletion 2 downstream_gene_variant HET FN3126-S Chr7 13474001 13571000 0 0 Deletion 96999 LOC_Os07g23870 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 13474001 13571000 0 0 Deletion 96999 LOC_Os07g23880 glycosyl hydrolase, family 31, putative, expressed FN3126-S Chr7 13474001 13571000 0 0 Deletion 96999 LOC_Os07g23890 OsFBDUF36 - F-box and DUF domain containing protein, expressed FN3126-S Chr7 13474001 13571000 0 0 Deletion 96999 LOC_Os07g23900 OsFBX234 - F-box domain containing protein, expressed FN3126-S Chr7 13474001 13571000 0 0 Deletion 96999 LOC_Os07g23910 hypothetical protein FN3126-S Chr7 13474001 13571000 0 0 Deletion 96999 LOC_Os07g23920 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr7 13474001 13571000 0 0 Deletion 96999 LOC_Os07g23930 expressed protein FN3126-S Chr7 13474001 13571000 0 0 Deletion 96999 LOC_Os07g23944 glycosyl hydrolase, family 31, putative, expressed FN3126-S Chr7 13474001 13571000 0 0 Deletion 96999 LOC_Os07g23960 transferase family protein, putative, expressed FN3126-S Chr7 13474001 13571000 0 0 Deletion 96999 LOC_Os07g23970 zinc finger, C3HC4 type domain containing protein, expressed FN3126-S Chr7 13474001 13571000 0 0 Deletion 96999 LOC_Os07g23990 tetratricopeptide repeat domain containing protein, putative, expressed FN3126-S Chr7 13587001 13615000 0 0 Deletion 27999 LOC_Os07g23990 tetratricopeptide repeat domain containing protein, putative, expressed FN3126-S Chr7 13587001 13615000 0 0 Deletion 27999 LOC_Os07g24000 AWPM-19-like membrane family protein, putative, expressed FN3126-S Chr7 13587001 13615000 0 0 Deletion 27999 LOC_Os07g24010 hypothetical protein FN3126-S Chr7 13587001 13615000 0 0 Deletion 27999 LOC_Os07g24020 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr7 13825001 13862000 0 0 Deletion 36999 LOC_Os07g24320 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 13825001 13862000 0 0 Deletion 36999 LOC_Os07g24330 conserved hypothetical protein FN3126-S Chr7 13825001 13862000 0 0 Deletion 36999 LOC_Os07g24340 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr7 13825001 13862000 0 0 Deletion 36999 LOC_Os07g24350 homeobox domain containing protein, expressed FN3126-S Chr7 13825001 13862000 0 0 Deletion 36999 LOC_Os07g24740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 14070001 14108000 0 0 Deletion 37999 LOC_Os07g24750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 14070001 14108000 0 0 Deletion 37999 LOC_Os07g24760 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr7 14070001 14108000 0 0 Deletion 37999 LOC_Os07g24770 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 14070001 14108000 0 0 Deletion 37999 LOC_Os07g24780 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr7 14070001 14108000 0 0 Deletion 37999 LOC_Os07g24790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 14070001 14108000 0 0 Deletion 37999 LOC_Os07g24800 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 14070001 14108000 0 0 Deletion 37999 LOC_Os07g24810 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 14070001 14108000 0 0 Deletion 37999 LOC_Os07g24820 thionin-like peptide, putative, expressed FN3126-S Chr7 14313001 14337000 0 0 Deletion 23999 LOC_Os07g25090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 14313001 14337000 0 0 Deletion 23999 LOC_Os07g25100 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr7 14313001 14337000 0 0 Deletion 23999 LOC_Os07g25270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 14438001 14453000 0 0 Deletion 14999 LOC_Os07g25280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr7 14438001 14453000 0 0 Deletion 14999 LOC_Os07g25290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 14438001 14453000 0 0 Deletion 14999 LOC_Os07g25300 retrotransposon, putative, centromere-specific FN3126-S Chr7 14438001 14453000 0 0 Deletion 14999 LOC_Os07g25530 expressed protein FN3126-S Chr7 14612001 14625000 0 0 Deletion 12999 LOC_Os07g25540 flavin monooxygenase, putative, expressed FN3126-S Chr7 14612001 14625000 0 0 Deletion 12999 LOC_Os07g25590 decarboxylase, putative, expressed FN3126-S Chr7 14671001 14708000 0 0 Deletion 36999 LOC_Os07g25590 decarboxylase, putative, expressed FN3126-S Chr7 14671001 14708000 0 0 Deletion 36999 LOC_Os07g25600 expressed protein FN3126-S Chr7 14671001 14708000 0 0 Deletion 36999 LOC_Os07g25620 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 14671001 14708000 0 0 Deletion 36999 LOC_Os07g25630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 14671001 14708000 0 0 Deletion 36999 LOC_Os07g25640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 14671001 14708000 0 0 Deletion 36999 LOC_Os07g25650 expressed protein FN3126-S Chr7 14978001 14999000 0 0 Deletion 20999 LOC_Os07g26160 hypothetical protein FN3126-S Chr7 15730001 15755000 0 0 Deletion 24999 LOC_Os07g27130 hypothetical protein FN3126-S Chr7 15730001 15755000 0 0 Deletion 24999 LOC_Os07g27140 AT hook motif family protein, expressed FN3126-S Chr7 15730001 15755000 0 0 Deletion 24999 LOC_Os07g27150 trafficking protein particle complex subunit 4, putative, expressed FN3126-S Chr7 15730001 15755000 0 0 Deletion 24999 LOC_Os07g27200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 15799001 15824000 0 0 Deletion 24999 LOC_Os07g27200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 15799001 15824000 0 0 Deletion 24999 LOC_Os07g27210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 15799001 15824000 0 0 Deletion 24999 LOC_Os07g27220 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr7 15799001 15824000 0 0 Deletion 24999 LOC_Os07g27230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 15967001 16002000 0 0 Deletion 34999 LOC_Os07g27410 expressed protein FN3126-S Chr7 15967001 16002000 0 0 Deletion 34999 LOC_Os07g27420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 15967001 16002000 0 0 Deletion 34999 LOC_Os07g27430 expressed protein FN3126-S Chr7 15967001 16002000 0 0 Deletion 34999 LOC_Os07g27450 expressed protein FN3126-S Chr7 15967001 16002000 0 0 Deletion 34999 LOC_Os07g27460 serine/threonine-protein kinase 19, putative, expressed FN3126-S Chr7 16841001 16860000 0 0 Deletion 18999 LOC_Os07g28780 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr7 16841001 16860000 0 0 Deletion 18999 LOC_Os07g28790 PAP fibrillin family domain containing protein, expressed FN3126-S Chr7 16841001 16860000 0 0 Deletion 18999 LOC_Os07g28970 retrotransposon, putative, centromere-specific, expressed FN3126-S Chr7 16955631 16955633 0 0 Deletion 2 INTERGENIC HET FN3126-S Chr7 16992001 17011000 0 0 Deletion 18999 LOC_Os07g28980 expressed protein FN3126-S Chr7 16992001 17011000 0 0 Deletion 18999 LOC_Os07g28990 expressed protein FN3126-S Chr7 16992001 17011000 0 0 Deletion 18999 LOC_Os07g29460 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr7 17082118 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3126-S Chr7 17292001 17315000 0 0 Deletion 22999 LOC_Os07g29460 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr7 17292001 17315000 0 0 Deletion 22999 LOC_Os07g29470 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 17292001 17315000 0 0 Deletion 22999 LOC_Os07g29480 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr7 17347001 17388000 0 0 Deletion 40999 LOC_Os07g29550 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 17347001 17388000 0 0 Deletion 40999 LOC_Os07g29560 expressed protein FN3126-S Chr7 17347001 17388000 0 0 Deletion 40999 LOC_Os07g29570 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 17347001 17388000 0 0 Deletion 40999 LOC_Os07g29580 expressed protein FN3126-S Chr7 17347001 17388000 0 0 Deletion 40999 LOC_Os07g29590 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr7 17540001 17574000 0 0 Deletion 33999 LOC_Os07g29860 ankyrin repeat family protein, putative, expressed FN3126-S Chr7 17540001 17574000 0 0 Deletion 33999 LOC_Os07g30030 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 17699001 17736000 0 0 Deletion 36999 LOC_Os07g30030 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 17699001 17736000 0 0 Deletion 36999 LOC_Os07g30040 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 17699001 17736000 0 0 Deletion 36999 LOC_Os07g30050 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 17699001 17736000 0 0 Deletion 36999 LOC_Os07g30060 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 17699001 17736000 0 0 Deletion 36999 LOC_Os07g30070 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 18481001 18506000 0 0 Deletion 24999 LOC_Os07g31220 hypothetical protein FN3126-S Chr7 18481001 18506000 0 0 Deletion 24999 LOC_Os07g31230 hypothetical protein FN3126-S Chr7 18481001 18506000 0 0 Deletion 24999 LOC_Os07g31240 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 18481001 18506000 0 0 Deletion 24999 LOC_Os07g31244 expressed protein FN3126-S Chr7 18481001 18506000 0 0 Deletion 24999 LOC_Os07g31250 OsWAK69 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed FN3126-S Chr7 18481001 18506000 0 0 Deletion 24999 LOC_Os07g31260 expressed protein FN3126-S Chr7 18481001 18506000 0 0 Deletion 24999 LOC_Os07g31380 NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed FN3126-S Chr7 18593001 18610000 0 0 Deletion 16999 LOC_Os07g31390 beta-expansin precursor, putative, expressed FN3126-S Chr7 18593001 18610000 0 0 Deletion 16999 LOC_Os07g31400 transposon protein, putative, unclassified, expressed FN3126-S Chr7 18593001 18610000 0 0 Deletion 16999 LOC_Os07g31410 expressed protein FN3126-S Chr7 18593001 18610000 0 0 Deletion 16999 LOC_Os07g31690 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 18818001 18840000 0 0 Deletion 21999 LOC_Os07g31700 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr7 18818001 18840000 0 0 Deletion 21999 LOC_Os07g31710 expressed protein FN3126-S Chr7 18818001 18840000 0 0 Deletion 21999 LOC_Os07g31790 CXE carboxylesterase, putative, expressed FN3126-S Chr7 18894001 18912000 0 0 Deletion 17999 LOC_Os07g31800 NB-ARC domain containing protein, expressed FN3126-S Chr7 18894001 18912000 0 0 Deletion 17999 LOC_Os07g31810 expressed protein FN3126-S Chr7 18894001 18912000 0 0 Deletion 17999 LOC_Os07g31830 GTPase activating protein, putative, expressed FN3126-S Chr7 18894001 18912000 0 0 Deletion 17999 LOC_Os07g31960 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed FN3126-S Chr7 19008001 19023000 0 0 Deletion 14999 LOC_Os07g31980 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 19516001 19530000 0 0 Deletion 13999 LOC_Os07g32690 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 19516001 19530000 0 0 Deletion 13999 LOC_Os07g32700 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 19516001 19530000 0 0 Deletion 13999 LOC_Os07g34200 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr7 20457001 20469000 0 0 Deletion 11999 LOC_Os07g34210 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr7 20457001 20469000 0 0 Deletion 11999 LOC_Os07g36360 OsFBO19 - F-box and other domain containing protein, expressed FN3126-S Chr7 20825182 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3126-S Chr7 22017001 22044000 0 0 Deletion 26999 LOC_Os07g36760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 22017001 22044000 0 0 Deletion 26999 LOC_Os07g36770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 22017001 22044000 0 0 Deletion 26999 LOC_Os07g36780 S-domain receptor-like protein kinase, putative, expressed FN3126-S Chr7 22017001 22044000 0 0 Deletion 26999 LOC_Os07g36790 hypothetical protein FN3126-S Chr7 22017001 22044000 0 0 Deletion 26999 LOC_Os07g37200 transposon protein, putative, unclassified, expressed FN3126-S Chr7 22297001 22313000 0 0 Deletion 15999 LOC_Os07g37230 inositol-1-monophosphatase, putative, expressed FN3126-S Chr7 22297001 22313000 0 0 Deletion 15999 LOC_Os07g37820 expressed protein FN3126-S Chr7 2262001 2275000 0 0 Deletion 12999 LOC_Os07g05145 expressed protein FN3126-S Chr7 2262001 2275000 0 0 Deletion 12999 LOC_Os07g05740 receptor-like protein kinase 2 precursor, putative, expressed FN3126-S Chr7 22682001 22715000 0 0 Deletion 32999 LOC_Os07g37820 expressed protein FN3126-S Chr7 22682001 22715000 0 0 Deletion 32999 LOC_Os07g37830 peptidyl-prolyl cis-trans isomerase CYP37, chloroplast precursor, putative, expressed FN3126-S Chr7 22682001 22715000 0 0 Deletion 32999 LOC_Os07g37840 lipase, putative, expressed FN3126-S Chr7 22682001 22715000 0 0 Deletion 32999 LOC_Os07g37850 expressed protein FN3126-S Chr7 22682001 22715000 0 0 Deletion 32999 LOC_Os07g37860 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 22682001 22715000 0 0 Deletion 32999 LOC_Os07g37870 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 23630001 23656000 0 0 Deletion 25999 LOC_Os07g39450 expressed protein FN3126-S Chr7 23630001 23656000 0 0 Deletion 25999 LOC_Os07g39460 transposon protein, putative, unclassified, expressed FN3126-S Chr7 23630001 23656000 0 0 Deletion 25999 LOC_Os07g39470 gibberellin response modulator protein, putative, expressed FN3126-S Chr7 23630001 23656000 0 0 Deletion 25999 LOC_Os07g39480 WRKY87, expressed FN3126-S Chr7 23814001 23841000 0 0 Deletion 26999 LOC_Os07g39750 GDSL-like lipase/acylhydrolase, putative, expressed FN3126-S Chr7 23814001 23841000 0 0 Deletion 26999 LOC_Os07g39760 expressed protein FN3126-S Chr7 23814001 23841000 0 0 Deletion 26999 LOC_Os07g39770 expressed protein FN3126-S Chr7 23814001 23841000 0 0 Deletion 26999 LOC_Os07g39780 SUMO-activating enzyme subunit 2, putative, expressed FN3126-S Chr7 23814001 23841000 0 0 Deletion 26999 LOC_Os07g39790 expressed protein FN3126-S Chr7 23814001 23841000 0 0 Deletion 26999 LOC_Os07g39950 mitotic checkpoint protein, putative, expressed FN3126-S Chr7 23965001 23984000 0 0 Deletion 18999 LOC_Os07g39960 ZOS7-07 - C2H2 zinc finger protein, expressed FN3126-S Chr7 23965001 23984000 0 0 Deletion 18999 LOC_Os07g39970 ZOS7-08 - C2H2 zinc finger protein, expressed FN3126-S Chr7 23965001 23984000 0 0 Deletion 18999 LOC_Os07g43110 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 25835001 25846000 0 0 Deletion 10999 LOC_Os07g43120 transposon protein, putative, unclassified, expressed FN3126-S Chr7 25835001 25846000 0 0 Deletion 10999 LOC_Os07g43130 expressed protein FN3126-S Chr7 26419001 26452000 0 0 Deletion 32999 LOC_Os07g44220 expressed protein FN3126-S Chr7 26419001 26452000 0 0 Deletion 32999 LOC_Os07g44230 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative, expressed FN3126-S Chr7 26419001 26452000 0 0 Deletion 32999 LOC_Os07g44240 transposon protein, putative, unclassified, expressed FN3126-S Chr7 26419001 26452000 0 0 Deletion 32999 LOC_Os07g44250 dirigent, putative, expressed FN3126-S Chr7 26419001 26452000 0 0 Deletion 32999 LOC_Os07g44260 dirigent, putative, expressed FN3126-S Chr7 26419001 26452000 0 0 Deletion 32999 LOC_Os07g44640 ZOS7-13 - C2H2 zinc finger protein, expressed FN3126-S Chr7 26578056 26578056 0 0 Insertion 1 upstream_gene_variant HET FN3126-S Chr7 26639001 26734000 0 0 Deletion 94999 LOC_Os07g44660 FGGY family of carbohydrate kinases, putative, expressed FN3126-S Chr7 26639001 26734000 0 0 Deletion 94999 LOC_Os07g44670 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 26639001 26734000 0 0 Deletion 94999 LOC_Os07g44680 expressed protein FN3126-S Chr7 26639001 26734000 0 0 Deletion 94999 LOC_Os07g44690 HSF-type DNA-binding domain containing protein, expressed FN3126-S Chr7 26639001 26734000 0 0 Deletion 94999 LOC_Os07g44700 expressed protein FN3126-S Chr7 26639001 26734000 0 0 Deletion 94999 LOC_Os07g44710 CAMK_CAMK_like.36 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN3126-S Chr7 26639001 26734000 0 0 Deletion 94999 LOC_Os07g44730 expressed protein FN3126-S Chr7 26639001 26734000 0 0 Deletion 94999 LOC_Os07g44740 chaperonin, putative, expressed FN3126-S Chr7 26639001 26734000 0 0 Deletion 94999 LOC_Os07g44744 expressed protein FN3126-S Chr7 26639001 26734000 0 0 Deletion 94999 LOC_Os07g44750 expressed protein FN3126-S Chr7 26639001 26734000 0 0 Deletion 94999 LOC_Os07g44760 expressed protein FN3126-S Chr7 26639001 26734000 0 0 Deletion 94999 LOC_Os07g44770 expressed protein FN3126-S Chr7 26639001 26734000 0 0 Deletion 94999 LOC_Os07g44780 GDSL-like lipase/acylhydrolase, putative, expressed FN3126-S Chr7 26639001 26734000 0 0 Deletion 94999 LOC_Os07g44790 transport protein particle component, Bet3, domain containing protein, expressed FN3126-S Chr7 26639001 26734000 0 0 Deletion 94999 LOC_Os07g45060 uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed FN3126-S Chr7 27306001 27321000 0 0 Deletion 14999 LOC_Os07g45750 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 27306001 27321000 0 0 Deletion 14999 LOC_Os07g45760 expressed protein FN3126-S Chr7 27306001 27321000 0 0 Deletion 14999 LOC_Os07g45880 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 27372001 27454000 0 0 Deletion 81999 LOC_Os07g45890 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr7 27372001 27454000 0 0 Deletion 81999 LOC_Os07g45900 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr7 27372001 27454000 0 0 Deletion 81999 LOC_Os07g45910 hypothetical protein FN3126-S Chr7 27372001 27454000 0 0 Deletion 81999 LOC_Os07g45920 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 27372001 27454000 0 0 Deletion 81999 LOC_Os07g45930 transposon protein, putative, unclassified FN3126-S Chr7 27372001 27454000 0 0 Deletion 81999 LOC_Os07g45940 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 27372001 27454000 0 0 Deletion 81999 LOC_Os07g45950 expressed protein FN3126-S Chr7 27372001 27454000 0 0 Deletion 81999 LOC_Os07g45960 expressed protein FN3126-S Chr7 27372001 27454000 0 0 Deletion 81999 LOC_Os07g45970 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 27372001 27454000 0 0 Deletion 81999 LOC_Os07g45980 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 27372001 27454000 0 0 Deletion 81999 LOC_Os07g45990 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 27372001 27454000 0 0 Deletion 81999 LOC_Os07g46000 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 27372001 27454000 0 0 Deletion 81999 LOC_Os07g47460 expressed protein FN3126-S Chr7 28387001 28408000 0 0 Deletion 20999 LOC_Os07g47500 histone-arginine methyltransferase CARM1, putative, expressed FN3126-S Chr7 28387001 28408000 0 0 Deletion 20999 LOC_Os07g47970 expressed protein FN3126-S Chr7 28636084 Chr2 3868966 0 Translocation 0 FN3126-S Chr7 28653001 28675000 0 0 Deletion 21999 LOC_Os07g47990 peroxidase precursor, putative, expressed FN3126-S Chr7 28653001 28675000 0 0 Deletion 21999 LOC_Os07g48000 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 28653001 28675000 0 0 Deletion 21999 LOC_Os07g48010 peroxidase precursor, putative, expressed FN3126-S Chr7 28653001 28675000 0 0 Deletion 21999 LOC_Os07g48020 peroxidase precursor, putative, expressed FN3126-S Chr7 28653001 28675000 0 0 Deletion 21999 LOC_Os07g48229 vacuolar-sorting receptor precursor, putative, expressed FN3126-S Chr7 29096001 29111000 0 0 Deletion 14999 LOC_Os07g48610 hydrolase, alpha/beta fold family domain containing protein, expressed FN3126-S Chr7 29096001 29111000 0 0 Deletion 14999 LOC_Os08g01920 SGR2, putative, expressed FN3126-S Chr7 3376001 3443000 0 0 Deletion 66999 LOC_Os07g06920 retrotransposon protein, putative, Ty1-copia subclass FN3126-S Chr7 3376001 3443000 0 0 Deletion 66999 LOC_Os07g06930 hypothetical protein FN3126-S Chr7 3376001 3443000 0 0 Deletion 66999 LOC_Os07g06940 valyl-tRNA synthetase, putative, expressed FN3126-S Chr7 3376001 3443000 0 0 Deletion 66999 LOC_Os07g06950 ubiquitin carboxyl-terminal hydrolase, putative, expressed FN3126-S Chr7 3376001 3443000 0 0 Deletion 66999 LOC_Os07g06960 pentatricopeptide, putative, expressed FN3126-S Chr7 3376001 3443000 0 0 Deletion 66999 LOC_Os07g06970 HEN1, putative, expressed FN3126-S Chr7 3376001 3443000 0 0 Deletion 66999 LOC_Os07g06980 histone deacetylase, putative, expressed FN3126-S Chr7 3376001 3443000 0 0 Deletion 66999 LOC_Os07g08300 major facilitator superfamily antiporter, putative, expressed FN3126-S Chr7 349001 363000 0 0 Deletion 13999 LOC_Os07g01560 transporter family protein, putative, expressed FN3126-S Chr7 349001 363000 0 0 Deletion 13999 LOC_Os07g01570 expressed protein FN3126-S Chr7 349001 363000 0 0 Deletion 13999 LOC_Os07g02310 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 4245001 4262000 0 0 Deletion 16999 LOC_Os07g08300 major facilitator superfamily antiporter, putative, expressed FN3126-S Chr7 4245001 4262000 0 0 Deletion 16999 LOC_Os07g08320 RNA recognition motif containing protein, expressed FN3126-S Chr7 4374001 4397000 0 0 Deletion 22999 LOC_Os07g08500 C-5 cytosine-specific DNA methylase, putative, expressed FN3126-S Chr7 4374001 4397000 0 0 Deletion 22999 LOC_Os07g08510 expressed protein FN3126-S Chr7 4374001 4397000 0 0 Deletion 22999 LOC_Os07g08660 40S ribosomal protein S15, putative, expressed FN3126-S Chr7 4460001 4480000 0 0 Deletion 19999 LOC_Os07g08669 expressed protein FN3126-S Chr7 4460001 4480000 0 0 Deletion 19999 LOC_Os07g08680 expressed protein FN3126-S Chr7 4460001 4480000 0 0 Deletion 19999 LOC_Os07g08690 hypothetical protein FN3126-S Chr7 4460001 4480000 0 0 Deletion 19999 LOC_Os07g08700 expressed protein FN3126-S Chr7 4460001 4480000 0 0 Deletion 19999 LOC_Os07g09200 expressed protein FN3126-S Chr7 4834001 4881000 0 0 Deletion 46999 LOC_Os07g09230 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 4834001 4881000 0 0 Deletion 46999 LOC_Os07g09240 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 4834001 4881000 0 0 Deletion 46999 LOC_Os07g09250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 4834001 4881000 0 0 Deletion 46999 LOC_Os07g09270 expressed protein FN3126-S Chr7 4834001 4881000 0 0 Deletion 46999 LOC_Os07g09280 expressed protein FN3126-S Chr7 4834001 4881000 0 0 Deletion 46999 LOC_Os07g09290 hypothetical protein FN3126-S Chr7 4834001 4881000 0 0 Deletion 46999 LOC_Os07g09310 thioredoxin, putative, expressed FN3126-S Chr7 4834001 4881000 0 0 Deletion 46999 LOC_Os07g09510 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 5022001 5068000 0 0 Deletion 45999 LOC_Os07g09520 expressed protein FN3126-S Chr7 5022001 5068000 0 0 Deletion 45999 LOC_Os07g09530 ankyrin repeat family protein, putative, expressed FN3126-S Chr7 5022001 5068000 0 0 Deletion 45999 LOC_Os07g09540 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr7 5022001 5068000 0 0 Deletion 45999 LOC_Os07g09560 ankyrin repeat family protein, putative, expressed FN3126-S Chr7 5022001 5068000 0 0 Deletion 45999 LOC_Os07g09570 hypothetical protein FN3126-S Chr7 5568529 5568536 0 0 Deletion 7 INTRON HOMO FN3126-S Chr7 5569001 5585000 0 0 Deletion 15999 LOC_Os07g10400 pentatricopeptide, putative, expressed FN3126-S Chr7 5569001 5585000 0 0 Deletion 15999 LOC_Os07g10740 polygalacturonase, putative, expressed FN3126-S Chr7 5827001 5854000 0 0 Deletion 26999 LOC_Os07g10750 transposon protein, putative, Pong sub-class, expressed FN3126-S Chr7 5827001 5854000 0 0 Deletion 26999 LOC_Os07g10760 expressed protein FN3126-S Chr7 5827001 5854000 0 0 Deletion 26999 LOC_Os07g10770 CESA8 - cellulose synthase, expressed FN3126-S Chr7 5827001 5854000 0 0 Deletion 26999 LOC_Os07g11180 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 6763001 6823000 0 0 Deletion 59999 LOC_Os07g12120 hypothetical protein FN3126-S Chr7 6763001 6823000 0 0 Deletion 59999 LOC_Os07g12130 MYB family transcription factor, putative, expressed FN3126-S Chr7 6763001 6823000 0 0 Deletion 59999 LOC_Os07g12140 PPR repeat domain containing protein, putative, expressed FN3126-S Chr7 6763001 6823000 0 0 Deletion 59999 LOC_Os07g12150 acyl carrier protein, putative, expressed FN3126-S Chr7 6763001 6823000 0 0 Deletion 59999 LOC_Os07g12160 KHG/KDPG aldolase, putative, expressed FN3126-S Chr7 6763001 6823000 0 0 Deletion 59999 LOC_Os07g12170 ADP-ribosylation factor, putative, expressed FN3126-S Chr7 6763001 6823000 0 0 Deletion 59999 LOC_Os07g12180 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 6763001 6823000 0 0 Deletion 59999 LOC_Os07g12190 retrotransposon protein, putative, unclassified FN3126-S Chr7 6763001 6823000 0 0 Deletion 59999 LOC_Os07g12304 expressed protein FN3126-S Chr7 6933001 6949000 0 0 Deletion 15999 LOC_Os07g12310 hypothetical protein FN3126-S Chr7 6933001 6949000 0 0 Deletion 15999 LOC_Os07g12350 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr7 6981001 7007000 0 0 Deletion 25999 LOC_Os07g12350 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr7 7285001 7302000 0 0 Deletion 16999 LOC_Os07g12760 hypothetical protein FN3126-S Chr7 7285001 7302000 0 0 Deletion 16999 LOC_Os07g12940 expressed protein FN3126-S Chr7 7425001 7447000 0 0 Deletion 21999 LOC_Os07g12950 transposon protein, putative, unclassified, expressed FN3126-S Chr7 7425001 7447000 0 0 Deletion 21999 LOC_Os07g12970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 7425001 7447000 0 0 Deletion 21999 LOC_Os07g12980 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 7478001 7538000 0 0 Deletion 59999 LOC_Os07g13050 hypothetical protein FN3126-S Chr7 7478001 7538000 0 0 Deletion 59999 LOC_Os07g13060 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr7 7478001 7538000 0 0 Deletion 59999 LOC_Os07g13070 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr7 7478001 7538000 0 0 Deletion 59999 LOC_Os07g13080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr7 7478001 7538000 0 0 Deletion 59999 LOC_Os07g13090 expressed protein FN3126-S Chr7 7478001 7538000 0 0 Deletion 59999 LOC_Os07g13100 DNA binding protein, putative, expressed FN3126-S Chr7 7478001 7538000 0 0 Deletion 59999 LOC_Os07g13120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 7478001 7538000 0 0 Deletion 59999 LOC_Os07g13130 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 7478001 7538000 0 0 Deletion 59999 LOC_Os07g13140 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 7478001 7538000 0 0 Deletion 59999 LOC_Os07g13240 hypothetical protein FN3126-S Chr7 7590001 7653000 0 0 Deletion 62999 LOC_Os07g13260 dof zinc finger domain containing protein, putative, expressed FN3126-S Chr7 7590001 7653000 0 0 Deletion 62999 LOC_Os07g13270 SNF7 domain containing protein, putative, expressed FN3126-S Chr7 7590001 7653000 0 0 Deletion 62999 LOC_Os07g13280 RNA recognition motif containing protein, putative, expressed FN3126-S Chr7 7590001 7653000 0 0 Deletion 62999 LOC_Os07g13310 RALFL10 - Rapid ALkalinization Factor RALF family protein precursor, putative, expressed FN3126-S Chr7 7590001 7653000 0 0 Deletion 62999 LOC_Os07g13319 hypothetical protein FN3126-S Chr7 7590001 7653000 0 0 Deletion 62999 LOC_Os07g13330 expressed protein FN3126-S Chr7 7590001 7653000 0 0 Deletion 62999 LOC_Os07g13340 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 7590001 7653000 0 0 Deletion 62999 LOC_Os07g13680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 774001 788000 0 0 Deletion 13999 LOC_Os07g02330 protein phosphatase 2C, putative, expressed FN3126-S Chr7 774001 788000 0 0 Deletion 13999 LOC_Os07g02560 NB-ARC domain containing protein, expressed FN3126-S Chr7 7863001 7915000 0 0 Deletion 51999 LOC_Os07g13710 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 7863001 7915000 0 0 Deletion 51999 LOC_Os07g13719 hypothetical protein FN3126-S Chr7 7863001 7915000 0 0 Deletion 51999 LOC_Os07g13728 hypothetical protein FN3126-S Chr7 7863001 7915000 0 0 Deletion 51999 LOC_Os07g13740 retrotransposon protein, putative, unclassified FN3126-S Chr7 7863001 7915000 0 0 Deletion 51999 LOC_Os07g13760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 7863001 7915000 0 0 Deletion 51999 LOC_Os07g13770 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed FN3126-S Chr7 7863001 7915000 0 0 Deletion 51999 LOC_Os07g13780 cytokinin-O-glucosyltransferase 2, putative, expressed FN3126-S Chr7 7863001 7915000 0 0 Deletion 51999 LOC_Os07g13790 hypothetical protein FN3126-S Chr7 7863001 7915000 0 0 Deletion 51999 LOC_Os07g13800 cytokinin-N-glucosyltransferase, putative, expressed FN3126-S Chr7 7863001 7915000 0 0 Deletion 51999 LOC_Os07g13810 cytokinin-N-glucosyltransferase 1, putative, expressed FN3126-S Chr7 8095001 8108000 0 0 Deletion 12999 LOC_Os07g14200 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr7 8095001 8108000 0 0 Deletion 12999 LOC_Os07g14210 retrotransposon protein, putative, unclassified FN3126-S Chr7 8095001 8108000 0 0 Deletion 12999 LOC_Os07g14220 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 8095001 8108000 0 0 Deletion 12999 LOC_Os07g14230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 8095001 8108000 0 0 Deletion 12999 LOC_Os07g14320 retrotransposon protein, putative, unclassified FN3126-S Chr7 8139843 Chr3 28718061 0 Translocation 0 FN3126-S Chr7 8173001 8188000 0 0 Deletion 14999 LOC_Os07g14320 retrotransposon protein, putative, unclassified FN3126-S Chr7 8173001 8188000 0 0 Deletion 14999 LOC_Os07g14330 expressed protein FN3126-S Chr7 8388001 8405000 0 0 Deletion 16999 LOC_Os07g14720 expressed protein FN3126-S Chr7 8388001 8405000 0 0 Deletion 16999 LOC_Os07g14970 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 8793001 8813000 0 0 Deletion 19999 LOC_Os07g15250 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 8793001 8813000 0 0 Deletion 19999 LOC_Os07g15260 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr7 8793001 8813000 0 0 Deletion 19999 LOC_Os07g15270 RNA-binding region RNP-1, putative, expressed FN3126-S Chr7 8793001 8813000 0 0 Deletion 19999 LOC_Os07g15280 expressed protein FN3126-S Chr7 9087001 9117000 0 0 Deletion 29999 LOC_Os07g15670 peroxiredoxin, putative, expressed FN3126-S Chr7 9087001 9117000 0 0 Deletion 29999 LOC_Os07g15680 phospholipase D, putative, expressed FN3126-S Chr7 9087001 9117000 0 0 Deletion 29999 LOC_Os07g15740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 9139001 9180000 0 0 Deletion 40999 LOC_Os07g15750 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr7 9139001 9180000 0 0 Deletion 40999 LOC_Os07g15760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 9139001 9180000 0 0 Deletion 40999 LOC_Os07g15770 CCT motif family protein, expressed FN3126-S Chr7 9139001 9180000 0 0 Deletion 40999 LOC_Os07g15780 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr7 9139001 9180000 0 0 Deletion 40999 LOC_Os07g15790 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr7 9139001 9180000 0 0 Deletion 40999 LOC_Os07g15800 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr7 9139001 9180000 0 0 Deletion 40999 LOC_Os07g15970 erythronate-4-phosphate dehydrogenase domain containing protein, expressed FN3126-S Chr7 921001 948000 0 0 Deletion 26999 LOC_Os07g02570 NB-ARC domain containing protein, expressed FN3126-S Chr7 921001 948000 0 0 Deletion 26999 LOC_Os07g02580 ubiquinone oxidoreductase, putative, expressed FN3126-S Chr7 921001 948000 0 0 Deletion 26999 LOC_Os07g02590 expressed protein FN3126-S Chr7 921001 948000 0 0 Deletion 26999 LOC_Os07g02600 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr7 921001 948000 0 0 Deletion 26999 LOC_Os07g02610 expressed protein FN3126-S Chr7 921001 948000 0 0 Deletion 26999 LOC_Os07g02620 NB-ARC domain containing protein, expressed FN3126-S Chr7 921001 948000 0 0 Deletion 26999 LOC_Os07g02624 expressed protein FN3126-S Chr7 9295001 9314000 0 0 Deletion 18999 LOC_Os07g16070 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 9375001 9394000 0 0 Deletion 18999 LOC_Os07g16100 retrotransposon protein, putative, unclassified FN3126-S Chr7 9375001 9394000 0 0 Deletion 18999 LOC_Os07g16110 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr7 9375001 9394000 0 0 Deletion 18999 LOC_Os07g16120 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 9375001 9394000 0 0 Deletion 18999 LOC_Os07g16410 transposon protein, putative, unclassified FN3126-S Chr7 9605001 9625000 0 0 Deletion 19999 LOC_Os07g16420 OsFBX232 - F-box domain containing protein, expressed FN3126-S Chr7 9605001 9625000 0 0 Deletion 19999 LOC_Os07g16430 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr7 9605001 9625000 0 0 Deletion 19999 LOC_Os07g16480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr7 9663001 9679000 0 0 Deletion 15999 LOC_Os07g16500 retrotransposon, putative, centromere-specific FN3126-S Chr7 9663001 9679000 0 0 Deletion 15999 LOC_Os07g16510 retrotransposon, putative, centromere-specific, expressed FN3126-S Chr7 9663001 9679000 0 0 Deletion 15999 LOC_Os07g17500 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr7 9667167 9667167 0 0 Insertion 1 upstream_gene_variant HET FN3126-S Chr8 10034001 10047000 0 0 Deletion 12999 LOC_Os08g16420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr8 10034001 10047000 0 0 Deletion 12999 LOC_Os08g16670 OsFBX280 - F-box domain containing protein, expressed FN3126-S Chr8 10199001 10211000 0 0 Deletion 11999 LOC_Os08g16680 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr8 10199001 10211000 0 0 Deletion 11999 LOC_Os08g16690 expressed protein FN3126-S Chr8 10199001 10211000 0 0 Deletion 11999 LOC_Os08g16990 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr8 10302305 10302305 0 0 Insertion 4 INTERGENIC HET FN3126-S Chr8 10406001 10464000 0 0 Deletion 57999 LOC_Os08g17000 expressed protein FN3126-S Chr8 10406001 10464000 0 0 Deletion 57999 LOC_Os08g17010 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 10406001 10464000 0 0 Deletion 57999 LOC_Os08g17020 expressed protein FN3126-S Chr8 10406001 10464000 0 0 Deletion 57999 LOC_Os08g17030 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr8 10406001 10464000 0 0 Deletion 57999 LOC_Os08g17040 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 10406001 10464000 0 0 Deletion 57999 LOC_Os08g17050 expressed protein FN3126-S Chr8 10406001 10464000 0 0 Deletion 57999 LOC_Os08g17060 expressed protein FN3126-S Chr8 10406001 10464000 0 0 Deletion 57999 LOC_Os08g17070 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 10406001 10464000 0 0 Deletion 57999 LOC_Os08g17080 PPR repeat domain containing protein, putative, expressed FN3126-S Chr8 10406001 10464000 0 0 Deletion 57999 LOC_Os08g17090 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 10406001 10464000 0 0 Deletion 57999 LOC_Os08g17750 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr8 10858001 10876000 0 0 Deletion 17999 LOC_Os08g17760 expressed protein FN3126-S Chr8 10858001 10876000 0 0 Deletion 17999 LOC_Os08g17770 expressed protein FN3126-S Chr8 10891001 10916000 0 0 Deletion 24999 LOC_Os08g17770 expressed protein FN3126-S Chr8 10891001 10916000 0 0 Deletion 24999 LOC_Os08g17784 purple acid phosphatase, putative, expressed FN3126-S Chr8 10981001 10994000 0 0 Deletion 12999 LOC_Os08g17900 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr8 10981001 10994000 0 0 Deletion 12999 LOC_Os08g17910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 10981001 10994000 0 0 Deletion 12999 LOC_Os08g17920 retrotransposon, putative, centromere-specific FN3126-S Chr8 10981001 10994000 0 0 Deletion 12999 LOC_Os08g19410 CBL-interacting protein kinase, putative, expressed FN3126-S Chr8 11528373 11528375 0 0 Deletion 2 INTRON HOMO FN3126-S Chr8 11611001 11633000 0 0 Deletion 21999 LOC_Os08g19450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 11611001 11633000 0 0 Deletion 21999 LOC_Os08g19460 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 11611001 11633000 0 0 Deletion 21999 LOC_Os08g19470 expressed protein FN3126-S Chr8 11611001 11633000 0 0 Deletion 21999 LOC_Os08g19710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 11802001 11830000 0 0 Deletion 27999 LOC_Os08g19720 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 11802001 11830000 0 0 Deletion 27999 LOC_Os08g19730 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 11802001 11830000 0 0 Deletion 27999 LOC_Os08g19740 retrotransposon protein, putative, Ty1-copia subclass FN3126-S Chr8 11802001 11830000 0 0 Deletion 27999 LOC_Os08g19750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 11802001 11830000 0 0 Deletion 27999 LOC_Os08g19760 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr8 12606001 12638000 0 0 Deletion 31999 LOC_Os08g21110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 12606001 12638000 0 0 Deletion 31999 LOC_Os08g21124 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 12606001 12638000 0 0 Deletion 31999 LOC_Os08g21140 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr8 1271839 1271923 0 0 Deletion 84 upstream_gene_variant HET FN3126-S Chr8 12986001 13007000 0 0 Deletion 20999 LOC_Os08g22610 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr8 13605001 13621000 0 0 Deletion 15999 LOC_Os08g22620 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 13605001 13621000 0 0 Deletion 15999 LOC_Os08g22630 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 13605001 13621000 0 0 Deletion 15999 LOC_Os08g22640 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 13605001 13621000 0 0 Deletion 15999 LOC_Os08g25190 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 13684513 Chr4 10213072 0 Translocation 0 LOC_Os04g18480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 13684513 Chr4 10213072 0 Translocation 0 LOC_Os08g22760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 15295524 Chr6 16332387 0 Translocation 0 FN3126-S Chr8 15446001 15460000 0 0 Deletion 13999 LOC_Os08g25410 conserved hypothetical protein FN3126-S Chr8 15446001 15460000 0 0 Deletion 13999 LOC_Os08g25960 transposon protein, putative, unclassified, expressed FN3126-S Chr8 16003001 16026000 0 0 Deletion 22999 LOC_Os08g26250 retrotransposon protein, putative, unclassified FN3126-S Chr8 16003001 16026000 0 0 Deletion 22999 LOC_Os08g26260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 16003001 16026000 0 0 Deletion 22999 LOC_Os08g26270 expressed protein FN3126-S Chr8 16003001 16026000 0 0 Deletion 22999 LOC_Os08g26280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr8 16003001 16026000 0 0 Deletion 22999 LOC_Os08g26290 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr8 16089001 16100000 0 0 Deletion 10999 LOC_Os08g26420 expressed protein FN3126-S Chr8 16089001 16100000 0 0 Deletion 10999 LOC_Os08g27100 expressed protein FN3126-S Chr8 16823001 16837000 0 0 Deletion 13999 LOC_Os08g27600 expressed protein FN3126-S Chr8 16823001 16837000 0 0 Deletion 13999 LOC_Os08g27610 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 16823001 16837000 0 0 Deletion 13999 LOC_Os08g27620 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 16823001 16837000 0 0 Deletion 13999 LOC_Os08g27630 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 16823001 16837000 0 0 Deletion 13999 LOC_Os08g27790 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 16929001 16963000 0 0 Deletion 33999 LOC_Os08g27800 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 16929001 16963000 0 0 Deletion 33999 LOC_Os08g27810 OsWAK115 - OsWAK receptor-like protein OsWAK-RLP, expressed FN3126-S Chr8 16929001 16963000 0 0 Deletion 33999 LOC_Os08g27824 NOL1/NOP2/sun family protein, putative, expressed FN3126-S Chr8 16929001 16963000 0 0 Deletion 33999 LOC_Os08g28240 carotenoid cleavage dioxygenase, putative, expressed FN3126-S Chr8 17229001 17265000 0 0 Deletion 35999 LOC_Os08g28250 expressed protein FN3126-S Chr8 17229001 17265000 0 0 Deletion 35999 LOC_Os08g28260 retrotransposon, putative, centromere-specific, expressed FN3126-S Chr8 17229001 17265000 0 0 Deletion 35999 LOC_Os08g28270 hypothetical protein FN3126-S Chr8 17229001 17265000 0 0 Deletion 35999 LOC_Os08g28280 retrotransposon protein, putative, unclassified FN3126-S Chr8 17229001 17265000 0 0 Deletion 35999 LOC_Os08g28590 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr8 17461001 17477000 0 0 Deletion 15999 LOC_Os08g28600 resistance protein, putative, expressed FN3126-S Chr8 17461001 17477000 0 0 Deletion 15999 LOC_Os08g28750 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr8 17589001 17610000 0 0 Deletion 20999 LOC_Os08g28760 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr8 17589001 17610000 0 0 Deletion 20999 LOC_Os08g28770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 17589001 17610000 0 0 Deletion 20999 LOC_Os08g28780 SKP1, putative, expressed FN3126-S Chr8 17589001 17610000 0 0 Deletion 20999 LOC_Os08g28784 expressed protein FN3126-S Chr8 17589001 17610000 0 0 Deletion 20999 LOC_Os08g29030 expressed protein FN3126-S Chr8 17776001 17809000 0 0 Deletion 32999 LOC_Os08g29030 expressed protein FN3126-S Chr8 17776001 17809000 0 0 Deletion 32999 LOC_Os08g29040 protein kinase domain containing protein, expressed FN3126-S Chr8 17776001 17809000 0 0 Deletion 32999 LOC_Os08g29050 retrotransposon protein, putative, unclassified FN3126-S Chr8 17776001 17809000 0 0 Deletion 32999 LOC_Os08g29060 retrotransposon protein, putative, unclassified FN3126-S Chr8 17776001 17809000 0 0 Deletion 32999 LOC_Os08g29070 retrotransposon protein, putative, unclassified FN3126-S Chr8 17776001 17809000 0 0 Deletion 32999 LOC_Os08g29080 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 1807001 1824000 0 0 Deletion 16999 LOC_Os08g03810 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr8 1807001 1824000 0 0 Deletion 16999 LOC_Os08g04230 cysteine-rich repeat secretory protein 55 precursor, putative, expressed FN3126-S Chr8 18106001 18122000 0 0 Deletion 15999 LOC_Os08g29530 double-stranded RNA binding motif containing protein, expressed FN3126-S Chr8 18106001 18122000 0 0 Deletion 15999 LOC_Os08g29540 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 18106001 18122000 0 0 Deletion 15999 LOC_Os08g29550 retrotransposon protein, putative, unclassified FN3126-S Chr8 1840443 Chr3 30508218 0 Translocation 0 FN3126-S Chr8 18648001 18673000 0 0 Deletion 24999 LOC_Os08g30310 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr8 18648001 18673000 0 0 Deletion 24999 LOC_Os08g30320 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr8 18648001 18673000 0 0 Deletion 24999 LOC_Os08g30330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr8 18837001 18864000 0 0 Deletion 26999 LOC_Os08g30590 C1-like domain containing protein, expressed FN3126-S Chr8 18837001 18864000 0 0 Deletion 26999 LOC_Os08g30600 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr8 18837001 18864000 0 0 Deletion 26999 LOC_Os08g30610 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr8 19072001 19114000 0 0 Deletion 41999 LOC_Os08g30910 YDG/SRA domain containing protein, expressed FN3126-S Chr8 19072001 19114000 0 0 Deletion 41999 LOC_Os08g30930 expressed protein FN3126-S Chr8 19072001 19114000 0 0 Deletion 41999 LOC_Os08g30940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 19072001 19114000 0 0 Deletion 41999 LOC_Os08g30950 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr8 19072001 19114000 0 0 Deletion 41999 LOC_Os08g30960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 19072001 19114000 0 0 Deletion 41999 LOC_Os08g32860 hypothetical protein FN3126-S Chr8 19865669 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g32020 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 20372001 20416000 0 0 Deletion 43999 LOC_Os08g32870 aldehyde dehydrogenase, putative, expressed FN3126-S Chr8 20372001 20416000 0 0 Deletion 43999 LOC_Os08g32880 disease resistance protein RPM1, putative, expressed FN3126-S Chr8 20372001 20416000 0 0 Deletion 43999 LOC_Os08g32890 disease resistance protein RPM1, putative, expressed FN3126-S Chr8 20372001 20416000 0 0 Deletion 43999 LOC_Os08g32900 hypothetical protein FN3126-S Chr8 20372001 20416000 0 0 Deletion 43999 LOC_Os08g32910 expressed protein FN3126-S Chr8 20372001 20416000 0 0 Deletion 43999 LOC_Os08g32920 dynamin-2B, putative, expressed FN3126-S Chr8 20372001 20416000 0 0 Deletion 43999 LOC_Os08g33300 cytochrome P450 72A1, putative, expressed FN3126-S Chr8 2061001 2070000 0 0 Deletion 8999 LOC_Os08g04240 cysteine-rich repeat secretory protein 55 precursor, putative, expressed FN3126-S Chr8 2061001 2070000 0 0 Deletion 8999 LOC_Os08g04250 cysteine-rich repeat secretory protein 55 precursor, putative, expressed FN3126-S Chr8 2061001 2070000 0 0 Deletion 8999 LOC_Os08g04540 decarboxylase, putative, expressed FN3126-S Chr8 20690722 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3126-S Chr8 20928001 20942000 0 0 Deletion 13999 LOC_Os08g33850 nucleoside-triphosphatase, putative, expressed FN3126-S Chr8 21198001 21219000 0 0 Deletion 20999 LOC_Os08g33870 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 21198001 21219000 0 0 Deletion 20999 LOC_Os08g33880 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed FN3126-S Chr8 21198001 21219000 0 0 Deletion 20999 LOC_Os08g33890 expressed protein FN3126-S Chr8 21198001 21219000 0 0 Deletion 20999 LOC_Os08g33900 CAAX amino terminal protease family protein, putative, expressed FN3126-S Chr8 21198001 21219000 0 0 Deletion 20999 LOC_Os08g33910 no apical meristem protein, putative, expressed FN3126-S Chr8 21198001 21219000 0 0 Deletion 20999 LOC_Os08g33950 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 21260001 21296000 0 0 Deletion 35999 LOC_Os08g33960 expressed protein FN3126-S Chr8 21260001 21296000 0 0 Deletion 35999 LOC_Os08g33970 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 21260001 21296000 0 0 Deletion 35999 LOC_Os08g33980 retrotransposon protein, putative, unclassified FN3126-S Chr8 21260001 21296000 0 0 Deletion 35999 LOC_Os08g35050 ARID/BRIGHT DNA-binding domain containing protein, expressed FN3126-S Chr8 22079001 22097000 0 0 Deletion 17999 LOC_Os08g36500 nitrate reductase, putative, expressed FN3126-S Chr8 2246001 2263000 0 0 Deletion 16999 LOC_Os08g05370 conserved hypothetical protein FN3126-S Chr8 22940001 22955000 0 0 Deletion 14999 FN3126-S Chr8 23059001 23072000 0 0 Deletion 12999 LOC_Os08g36520 peptidase aspartic family protein, putative, expressed FN3126-S Chr8 23059001 23072000 0 0 Deletion 12999 LOC_Os08g36530 aspartic proteinase nepenthesin precursor, putative, expressed FN3126-S Chr8 23059001 23072000 0 0 Deletion 12999 LOC_Os08g36540 aspartic proteinase nepenthesin-1 precursor, putative, expressed FN3126-S Chr8 23059001 23072000 0 0 Deletion 12999 LOC_Os08g36630 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed FN3126-S Chr8 23299001 23313000 0 0 Deletion 13999 LOC_Os08g36880 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr8 23299001 23313000 0 0 Deletion 13999 LOC_Os08g36890 expressed protein FN3126-S Chr8 23299001 23313000 0 0 Deletion 13999 LOC_Os08g37520 pentatricopeptide, putative, expressed FN3126-S Chr8 23763001 23794000 0 0 Deletion 30999 LOC_Os08g37530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 23763001 23794000 0 0 Deletion 30999 LOC_Os08g37540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 23763001 23794000 0 0 Deletion 30999 LOC_Os08g37550 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 23763001 23794000 0 0 Deletion 30999 LOC_Os08g37560 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 23763001 23794000 0 0 Deletion 30999 LOC_Os08g37570 spotted leaf 11, putative, expressed FN3126-S Chr8 23763001 23794000 0 0 Deletion 30999 LOC_Os08g37874 2-nitropropane dioxygenase family, putative, expressed FN3126-S Chr8 23991001 24003000 0 0 Deletion 11999 LOC_Os08g37890 expressed protein FN3126-S Chr8 23991001 24003000 0 0 Deletion 11999 LOC_Os08g37904 ZOS8-08 - C2H2 zinc finger protein, expressed FN3126-S Chr8 23991001 24003000 0 0 Deletion 11999 LOC_Os08g38760 expressed protein FN3126-S Chr8 24506001 24522000 0 0 Deletion 15999 LOC_Os08g38780 core histone H2A/H2B/H3/H4, putative, expressed FN3126-S Chr8 24506001 24522000 0 0 Deletion 15999 LOC_Os08g38790 expressed protein FN3126-S Chr8 24506001 24522000 0 0 Deletion 15999 LOC_Os08g39150 expressed protein FN3126-S Chr8 25542001 25565000 0 0 Deletion 22999 LOC_Os08g40350 expressed protein FN3126-S Chr8 25542001 25565000 0 0 Deletion 22999 LOC_Os08g40360 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr8 25542001 25565000 0 0 Deletion 22999 LOC_Os08g40370 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 25542001 25565000 0 0 Deletion 22999 LOC_Os08g40380 sulfotransferase domain containing protein, expressed FN3126-S Chr8 25542001 25565000 0 0 Deletion 22999 LOC_Os08g40620 rabGAP/TBC domain-containing protein, putative, expressed FN3126-S Chr8 25714001 25781000 0 0 Deletion 66999 LOC_Os08g40630 mTERF domain containing protein, expressed FN3126-S Chr8 25714001 25781000 0 0 Deletion 66999 LOC_Os08g40640 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr8 25714001 25781000 0 0 Deletion 66999 LOC_Os08g40650 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN3126-S Chr8 25714001 25781000 0 0 Deletion 66999 LOC_Os08g40660 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 25714001 25781000 0 0 Deletion 66999 LOC_Os08g40670 retrotransposon protein, putative, unclassified FN3126-S Chr8 25714001 25781000 0 0 Deletion 66999 LOC_Os08g40680 glycosyl hydrolase, putative, expressed FN3126-S Chr8 25714001 25781000 0 0 Deletion 66999 LOC_Os08g40690 glycosyl hydrolase, putative, expressed FN3126-S Chr8 25714001 25781000 0 0 Deletion 66999 LOC_Os08g40700 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 25714001 25781000 0 0 Deletion 66999 LOC_Os08g40710 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 25714001 25781000 0 0 Deletion 66999 LOC_Os08g40720 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed FN3126-S Chr8 25714001 25781000 0 0 Deletion 66999 LOC_Os08g40730 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 25714001 25781000 0 0 Deletion 66999 LOC_Os08g40740 glycosyl hydrolase, putative, expressed FN3126-S Chr8 25714001 25781000 0 0 Deletion 66999 LOC_Os08g41900 expressed protein FN3126-S Chr8 26454001 26479000 0 0 Deletion 24999 LOC_Os08g41900 expressed protein FN3126-S Chr8 26454001 26479000 0 0 Deletion 24999 LOC_Os08g41910 Sua5/YciO/YrdC/YwlC family protein, putative, expressed FN3126-S Chr8 27400001 27432000 0 0 Deletion 31999 LOC_Os08g43370 6-phosphogluconolactonase, putative, expressed FN3126-S Chr8 27400001 27432000 0 0 Deletion 31999 LOC_Os08g43380 TBC domain containing protein, expressed FN3126-S Chr8 27400001 27432000 0 0 Deletion 31999 LOC_Os08g43390 cytochrome P450, putative, expressed FN3126-S Chr8 27400001 27432000 0 0 Deletion 31999 LOC_Os09g01900 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr8 2835001 2883000 0 0 Deletion 47999 LOC_Os08g05380 expressed protein FN3126-S Chr8 2835001 2883000 0 0 Deletion 47999 LOC_Os08g05390 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr8 2835001 2883000 0 0 Deletion 47999 LOC_Os08g05400 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr8 2835001 2883000 0 0 Deletion 47999 LOC_Os08g05410 expressed protein FN3126-S Chr8 2835001 2883000 0 0 Deletion 47999 LOC_Os08g05420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr8 2835001 2883000 0 0 Deletion 47999 LOC_Os08g05430 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr8 2835001 2883000 0 0 Deletion 47999 LOC_Os08g05440 NB-ARC domain containing protein, expressed FN3126-S Chr8 2835001 2883000 0 0 Deletion 47999 LOC_Os08g05690 ABC transporter, ATP-binding protein, putative, expressed FN3126-S Chr8 3051001 3092000 0 0 Deletion 40999 LOC_Os08g05690 ABC transporter, ATP-binding protein, putative, expressed FN3126-S Chr8 3051001 3092000 0 0 Deletion 40999 LOC_Os08g05700 expressed protein FN3126-S Chr8 3051001 3092000 0 0 Deletion 40999 LOC_Os08g05710 ABC transporter, ATP-binding protein, putative, expressed FN3126-S Chr8 3051001 3092000 0 0 Deletion 40999 LOC_Os08g05720 integral membrane protein, putative, expressed FN3126-S Chr8 3051001 3092000 0 0 Deletion 40999 LOC_Os08g05750 pentatricopeptide, putative, expressed FN3126-S Chr8 3051001 3092000 0 0 Deletion 40999 LOC_Os08g05770 expressed protein FN3126-S Chr8 3502001 3512000 0 0 Deletion 9999 LOC_Os08g07080 terpene synthase, putative, expressed FN3126-S Chr8 3955001 4001000 0 0 Deletion 45999 LOC_Os08g07080 terpene synthase, putative, expressed FN3126-S Chr8 3955001 4001000 0 0 Deletion 45999 LOC_Os08g07090 expressed protein FN3126-S Chr8 3955001 4001000 0 0 Deletion 45999 LOC_Os08g07100 terpene synthase, putative, expressed FN3126-S Chr8 3955001 4001000 0 0 Deletion 45999 LOC_Os08g07120 terpene synthase, putative, expressed FN3126-S Chr8 3955001 4001000 0 0 Deletion 45999 LOC_Os08g07130 transposon protein, putative, unclassified, expressed FN3126-S Chr8 3955001 4001000 0 0 Deletion 45999 LOC_Os08g07140 transposon protein, putative, unclassified, expressed FN3126-S Chr8 4248001 4280000 0 0 Deletion 31999 LOC_Os08g07570 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 4248001 4280000 0 0 Deletion 31999 LOC_Os08g07590 expressed protein FN3126-S Chr8 4248001 4280000 0 0 Deletion 31999 LOC_Os08g07600 expressed protein FN3126-S Chr8 4248001 4280000 0 0 Deletion 31999 LOC_Os08g07610 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr8 4248001 4280000 0 0 Deletion 31999 LOC_Os08g07620 expressed protein FN3126-S Chr8 4248001 4280000 0 0 Deletion 31999 LOC_Os08g07940 disease resistance protein RPM1, putative, expressed FN3126-S Chr8 4306956 Chr6 25086803 0 Translocation 0 FN3126-S Chr8 4476001 4505000 0 0 Deletion 28999 LOC_Os08g07940 disease resistance protein RPM1, putative, expressed FN3126-S Chr8 4476001 4505000 0 0 Deletion 28999 LOC_Os08g07950 NB-ARC domain containing protein, expressed FN3126-S Chr8 4476001 4505000 0 0 Deletion 28999 LOC_Os08g07960 mitotic checkpoint protein, putative, expressed FN3126-S Chr8 5072001 5101000 0 0 Deletion 28999 LOC_Os08g08760 ubiquitin family protein, putative, expressed FN3126-S Chr8 5072001 5101000 0 0 Deletion 28999 LOC_Os08g08770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 5072001 5101000 0 0 Deletion 28999 LOC_Os08g08780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 5072001 5101000 0 0 Deletion 28999 LOC_Os08g08790 ubiquitin family protein, putative, expressed FN3126-S Chr8 5072001 5101000 0 0 Deletion 28999 LOC_Os08g08800 expressed protein FN3126-S Chr8 5192175 5192177 0 0 Deletion 2 upstream_gene_variant HET FN3126-S Chr8 5891001 5907000 0 0 Deletion 15999 LOC_Os08g10150 SHR5-receptor-like kinase, putative, expressed FN3126-S Chr8 5891001 5907000 0 0 Deletion 15999 LOC_Os08g10160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 5891001 5907000 0 0 Deletion 15999 LOC_Os08g10180 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 6009001 6042000 0 0 Deletion 32999 LOC_Os08g10320 SHR5-receptor-like kinase, putative, expressed FN3126-S Chr8 6009001 6042000 0 0 Deletion 32999 LOC_Os08g10330 SHR5-receptor-like kinase, putative, expressed FN3126-S Chr8 6009001 6042000 0 0 Deletion 32999 LOC_Os08g12010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 7051001 7090000 0 0 Deletion 38999 LOC_Os08g12020 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 7051001 7090000 0 0 Deletion 38999 LOC_Os08g12040 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 8028001 8042000 0 0 Deletion 13999 LOC_Os08g13500 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 8028001 8042000 0 0 Deletion 13999 LOC_Os08g13510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 8028001 8042000 0 0 Deletion 13999 LOC_Os08g13520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 8028001 8042000 0 0 Deletion 13999 LOC_Os08g13530 hypothetical protein FN3126-S Chr8 8047001 8074000 0 0 Deletion 26999 LOC_Os08g13540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 8047001 8074000 0 0 Deletion 26999 LOC_Os08g13550 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr8 8047001 8074000 0 0 Deletion 26999 LOC_Os08g13560 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 8047001 8074000 0 0 Deletion 26999 LOC_Os08g13570 exo70 exocyst complex subunit family protein, putative, expressed FN3126-S Chr8 8047001 8074000 0 0 Deletion 26999 LOC_Os08g13580 transposon protein, putative, unclassified, expressed FN3126-S Chr8 8047001 8074000 0 0 Deletion 26999 LOC_Os08g13590 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 807001 821000 0 0 Deletion 13999 LOC_Os08g02340 60S acidic ribosomal protein, putative, expressed FN3126-S Chr8 8186516 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g13720 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 9040001 9049000 0 0 Deletion 8999 LOC_Os08g15290 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 908001 927000 0 0 Deletion 18999 LOC_Os08g02354 expressed protein FN3126-S Chr8 908001 927000 0 0 Deletion 18999 LOC_Os08g02670 ATP binding protein, putative, expressed FN3126-S Chr8 9297001 9318000 0 0 Deletion 20999 LOC_Os08g15300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 9297001 9318000 0 0 Deletion 20999 LOC_Os08g15310 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr8 9297001 9318000 0 0 Deletion 20999 LOC_Os08g15320 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr8 9297001 9318000 0 0 Deletion 20999 LOC_Os08g15550 DEFL56 - Defensin and Defensin-like DEFL family, expressed FN3126-S Chr8 9457001 9477000 0 0 Deletion 19999 LOC_Os08g15560 hypothetical protein FN3126-S Chr8 9457001 9477000 0 0 Deletion 19999 LOC_Os08g15570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 9457001 9477000 0 0 Deletion 19999 LOC_Os08g15580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 9457001 9477000 0 0 Deletion 19999 LOC_Os08g15590 Leucine rich repeat N-terminal domain containing protein, putative, expressed FN3126-S Chr8 9457001 9477000 0 0 Deletion 19999 LOC_Os08g15700 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 9533001 9558000 0 0 Deletion 24999 LOC_Os08g15710 DC1 domain, putative, expressed FN3126-S Chr8 9533001 9558000 0 0 Deletion 24999 LOC_Os08g15720 retrotransposon protein, putative, LINE subclass, expressed FN3126-S Chr8 9533001 9558000 0 0 Deletion 24999 LOC_Os08g15730 hypothetical protein FN3126-S Chr8 9533001 9558000 0 0 Deletion 24999 LOC_Os08g15740 conserved hypothetical protein FN3126-S Chr8 9533001 9558000 0 0 Deletion 24999 LOC_Os08g15750 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr8 9533001 9558000 0 0 Deletion 24999 LOC_Os08g15760 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr8 9533001 9558000 0 0 Deletion 24999 LOC_Os08g15770 expressed protein FN3126-S Chr8 9571001 9617000 0 0 Deletion 45999 LOC_Os08g15810 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr8 9571001 9617000 0 0 Deletion 45999 LOC_Os08g15820 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr8 9571001 9617000 0 0 Deletion 45999 LOC_Os08g15830 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 9571001 9617000 0 0 Deletion 45999 LOC_Os08g15860 expressed protein FN3126-S Chr8 9642001 9679000 0 0 Deletion 36999 LOC_Os08g15870 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr8 9642001 9679000 0 0 Deletion 36999 LOC_Os08g15880 NBS-LRR disease resistance protein, putative, expressed FN3126-S Chr8 9642001 9679000 0 0 Deletion 36999 LOC_Os08g15890 hypothetical protein FN3126-S Chr8 9642001 9679000 0 0 Deletion 36999 LOC_Os08g16140 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr8 9849001 9873000 0 0 Deletion 23999 LOC_Os08g16170 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr8 9849001 9873000 0 0 Deletion 23999 LOC_Os08g16180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 9849001 9873000 0 0 Deletion 23999 LOC_Os08g16190 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr8 9849001 9873000 0 0 Deletion 23999 LOC_Os08g16210 expressed protein FN3126-S Chr8 9882001 9909000 0 0 Deletion 26999 LOC_Os08g16210 expressed protein FN3126-S Chr8 9882001 9909000 0 0 Deletion 26999 LOC_Os08g16220 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr8 9882001 9909000 0 0 Deletion 26999 LOC_Os08g16230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 9882001 9909000 0 0 Deletion 26999 LOC_Os08g16240 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr8 9926001 9934000 0 0 Deletion 7999 LOC_Os08g16410 expressed protein FN3126-S Chr8 9931019 9931022 0 0 Deletion 3 downstream_gene_variant HET FN3126-S Chr9 10147001 10174000 0 0 Deletion 26999 LOC_Os09g16550 ankyrin repeat family protein, putative, expressed FN3126-S Chr9 10147001 10174000 0 0 Deletion 26999 LOC_Os09g16560 hypothetical protein FN3126-S Chr9 10147001 10174000 0 0 Deletion 26999 LOC_Os09g16570 hypothetical protein FN3126-S Chr9 10147001 10174000 0 0 Deletion 26999 LOC_Os09g16870 A3-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with A3 subfamily conserved sequence, expressed FN3126-S Chr9 10312712 10312728 0 0 Deletion 16 frameshift_variant HET LOC_Os09g16880 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr9 10957001 10979000 0 0 Deletion 21999 LOC_Os09g17920 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr9 10957001 10979000 0 0 Deletion 21999 LOC_Os09g17930 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr9 10957001 10979000 0 0 Deletion 21999 LOC_Os09g18000 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN3126-S Chr9 11019001 11052000 0 0 Deletion 32999 LOC_Os09g18010 expressed protein FN3126-S Chr9 11019001 11052000 0 0 Deletion 32999 LOC_Os09g18020 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN3126-S Chr9 11271001 11313000 0 0 Deletion 41999 LOC_Os09g18380 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr9 11271001 11313000 0 0 Deletion 41999 LOC_Os09g18390 flavonol synthase/flavanone 3-hydroxylase, putative, expressed FN3126-S Chr9 11271001 11313000 0 0 Deletion 41999 LOC_Os09g18400 expressed protein FN3126-S Chr9 11271001 11313000 0 0 Deletion 41999 LOC_Os09g18410 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr9 11271001 11313000 0 0 Deletion 41999 LOC_Os09g18420 hypothetical protein FN3126-S Chr9 11271001 11313000 0 0 Deletion 41999 LOC_Os09g18430 transposon protein, putative, Pong sub-class, expressed FN3126-S Chr9 11271001 11313000 0 0 Deletion 41999 LOC_Os09g18440 transposon protein, putative, Pong sub-class, expressed FN3126-S Chr9 11271001 11313000 0 0 Deletion 41999 LOC_Os09g18450 flavonol synthase/flavanone 3-hydroxylase, putative, expressed FN3126-S Chr9 11271001 11313000 0 0 Deletion 41999 LOC_Os09g18490 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr9 11332001 11350000 0 0 Deletion 17999 LOC_Os09g18500 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr9 11332001 11350000 0 0 Deletion 17999 LOC_Os09g18520 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed FN3126-S Chr9 11332001 11350000 0 0 Deletion 17999 LOC_Os09g19580 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr9 1183001 1210000 0 0 Deletion 26999 LOC_Os09g02680 retrotransposon protein, putative, unclassified FN3126-S Chr9 1183001 1210000 0 0 Deletion 26999 LOC_Os09g02690 expressed protein FN3126-S Chr9 12845001 12871000 0 0 Deletion 25999 LOC_Os09g21310 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 12845001 12871000 0 0 Deletion 25999 LOC_Os09g21320 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 12845001 12871000 0 0 Deletion 25999 LOC_Os09g21330 expressed protein FN3126-S Chr9 12845001 12871000 0 0 Deletion 25999 LOC_Os09g21580 OsFBX324 - F-box domain containing protein, expressed FN3126-S Chr9 1309679 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g02810 CCAAT/enhancer-binding protein, putative, expressed FN3126-S Chr9 13319001 13341000 0 0 Deletion 21999 LOC_Os09g22000 hydrolase, HAD superfamily, Cof family, putative, expressed FN3126-S Chr9 13319001 13341000 0 0 Deletion 21999 LOC_Os09g22010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr9 13319001 13341000 0 0 Deletion 21999 LOC_Os09g22020 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 13319001 13341000 0 0 Deletion 21999 LOC_Os09g22030 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 13389001 13456000 0 0 Deletion 66999 LOC_Os09g22110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr9 13389001 13456000 0 0 Deletion 66999 LOC_Os09g22120 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 13389001 13456000 0 0 Deletion 66999 LOC_Os09g22130 expressed protein FN3126-S Chr9 13389001 13456000 0 0 Deletion 66999 LOC_Os09g22140 expressed protein FN3126-S Chr9 13389001 13456000 0 0 Deletion 66999 LOC_Os09g22150 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr9 13389001 13456000 0 0 Deletion 66999 LOC_Os09g22160 expressed protein FN3126-S Chr9 13389001 13456000 0 0 Deletion 66999 LOC_Os09g22170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr9 13389001 13456000 0 0 Deletion 66999 LOC_Os09g22190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr9 13389001 13456000 0 0 Deletion 66999 LOC_Os09g22200 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr9 13389001 13456000 0 0 Deletion 66999 LOC_Os09g22210 retrotransposon, putative, centromere-specific, expressed FN3126-S Chr9 13389001 13456000 0 0 Deletion 66999 LOC_Os09g22220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr9 13389001 13456000 0 0 Deletion 66999 LOC_Os09g22230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr9 13389001 13456000 0 0 Deletion 66999 LOC_Os09g22240 hypothetical protein FN3126-S Chr9 13938001 14004000 0 0 Deletion 65999 LOC_Os09g23480 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr9 13938001 14004000 0 0 Deletion 65999 LOC_Os09g23490 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr9 13938001 14004000 0 0 Deletion 65999 LOC_Os09g23500 hypothetical protein FN3126-S Chr9 13938001 14004000 0 0 Deletion 65999 LOC_Os09g23510 hypothetical protein FN3126-S Chr9 13938001 14004000 0 0 Deletion 65999 LOC_Os09g23520 expressed protein FN3126-S Chr9 13938001 14004000 0 0 Deletion 65999 LOC_Os09g23530 dehydrogenase, putative, expressed FN3126-S Chr9 13938001 14004000 0 0 Deletion 65999 LOC_Os09g23540 dehydrogenase, putative, expressed FN3126-S Chr9 13938001 14004000 0 0 Deletion 65999 LOC_Os09g23550 dehydrogenase, putative, expressed FN3126-S Chr9 13938001 14004000 0 0 Deletion 65999 LOC_Os09g23560 dehydrogenase, putative, expressed FN3126-S Chr9 13938001 14004000 0 0 Deletion 65999 LOC_Os09g27470 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr9 1638001 1678000 0 0 Deletion 39999 LOC_Os09g03380 transposon protein, putative, Mutator sub-class, expressed FN3126-S Chr9 1638001 1678000 0 0 Deletion 39999 LOC_Os09g03390 expressed protein FN3126-S Chr9 1638001 1678000 0 0 Deletion 39999 LOC_Os09g03400 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 1638001 1678000 0 0 Deletion 39999 LOC_Os09g03410 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr9 1685001 1711000 0 0 Deletion 25999 LOC_Os09g03420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr9 1685001 1711000 0 0 Deletion 25999 LOC_Os09g03430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr9 1685001 1711000 0 0 Deletion 25999 LOC_Os09g03440 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr9 1685001 1711000 0 0 Deletion 25999 LOC_Os09g03450 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 1685001 1711000 0 0 Deletion 25999 LOC_Os09g03460 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 1685001 1711000 0 0 Deletion 25999 LOC_Os09g03470 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 1685001 1711000 0 0 Deletion 25999 LOC_Os09g03870 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 18224001 18235000 0 0 Deletion 10999 LOC_Os09g29960 dof zinc finger domain containing protein, putative, expressed FN3126-S Chr9 18224001 18235000 0 0 Deletion 10999 LOC_Os09g36240 deoxyribodipyrimidine photolyase family protein, expressed FN3126-S Chr9 18719001 18732000 0 0 Deletion 12999 FN3126-S Chr9 19123707 Chr7 28591519 0 Translocation 0 LOC_Os09g32040 no apical meristem protein, putative, expressed FN3126-S Chr9 19123719 Chr7 28590457 0 Translocation 0 LOC_Os07g47860 tRNA synthetase, putative, expressed FN3126-S Chr9 19123719 Chr7 28590457 0 Translocation 0 LOC_Os09g32040 no apical meristem protein, putative, expressed FN3126-S Chr9 19200552 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3126-S Chr9 1974001 1983000 0 0 Deletion 8999 LOC_Os09g03880 retrotransposon protein, putative, unclassified FN3126-S Chr9 1974001 1983000 0 0 Deletion 8999 LOC_Os09g04190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr9 20912001 20947000 0 0 Deletion 34999 LOC_Os09g36250 MYB family transcription factor, putative, expressed FN3126-S Chr9 20912001 20947000 0 0 Deletion 34999 LOC_Os09g36260 expressed protein FN3126-S Chr9 20912001 20947000 0 0 Deletion 34999 LOC_Os09g36270 pantothenate kinase, putative, expressed FN3126-S Chr9 20912001 20947000 0 0 Deletion 34999 LOC_Os09g36280 glycosyl hydrolases family 17, putative, expressed FN3126-S Chr9 20912001 20947000 0 0 Deletion 34999 LOC_Os09g36290 Ser/Thr protein phosphatase family protein, putative, expressed FN3126-S Chr9 20912001 20947000 0 0 Deletion 34999 LOC_Os09g36300 OsLonP4 - Putative Lon protease homologue, expressed FN3126-S Chr9 21497001 21516000 0 0 Deletion 18999 LOC_Os09g37250 high mobility group, putative, expressed FN3126-S Chr9 21497001 21516000 0 0 Deletion 18999 LOC_Os09g37310 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 21553001 21573000 0 0 Deletion 19999 LOC_Os09g37320 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 21553001 21573000 0 0 Deletion 19999 LOC_Os09g37330 OsSAUR39 - Auxin-responsive SAUR gene family member, expressed FN3126-S Chr9 21553001 21573000 0 0 Deletion 19999 LOC_Os09g37340 expressed protein FN3126-S Chr9 21553001 21573000 0 0 Deletion 19999 LOC_Os09g37344 expressed protein FN3126-S Chr9 21553001 21573000 0 0 Deletion 19999 LOC_Os09g37350 OsSAUR40 - Auxin-responsive SAUR gene family member, expressed FN3126-S Chr9 21553001 21573000 0 0 Deletion 19999 LOC_Os09g37550 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr9 2163054 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3126-S Chr9 21648001 21669000 0 0 Deletion 20999 LOC_Os09g37560 expressed protein FN3126-S Chr9 21648001 21669000 0 0 Deletion 20999 LOC_Os09g37570 OsFBX340 - F-box domain containing protein, expressed FN3126-S Chr9 21648001 21669000 0 0 Deletion 20999 LOC_Os09g37580 expressed protein FN3126-S Chr9 21648001 21669000 0 0 Deletion 20999 LOC_Os09g37590 OsFBDUF47 - F-box and DUF domain containing protein, expressed FN3126-S Chr9 21648001 21669000 0 0 Deletion 20999 LOC_Os09g37630 transposon protein, putative, unclassified, expressed FN3126-S Chr9 21692001 21705000 0 0 Deletion 12999 LOC_Os09g37640 purine permease, putative, expressed FN3126-S Chr9 21692001 21705000 0 0 Deletion 12999 LOC_Os09g37650 flavin-containing monooxygenase family protein, putative, expressed FN3126-S Chr9 21692001 21705000 0 0 Deletion 12999 LOC_Os09g37660 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 21692001 21705000 0 0 Deletion 12999 LOC_Os09g37870 expressed protein FN3126-S Chr9 21835001 21850000 0 0 Deletion 14999 LOC_Os09g37880 serine/threonine-protein kinase receptor precursor, putative, expressed FN3126-S Chr9 21835001 21850000 0 0 Deletion 14999 LOC_Os09g37890 serine/threonine-protein kinase receptor precursor, putative, expressed FN3126-S Chr9 21835001 21850000 0 0 Deletion 14999 LOC_Os09g38720 mTERF domain containing protein, expressed FN3126-S Chr9 2202001 2219000 0 0 Deletion 16999 LOC_Os09g04190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr9 2202001 2219000 0 0 Deletion 16999 LOC_Os09g04200 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr9 2202001 2219000 0 0 Deletion 16999 LOC_Os09g04210 hydrolase/ zinc ion binding protein, putative, expressed FN3126-S Chr9 22061151 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3126-S Chr9 2207597 G-A 0 0 Single Base Substitution 0 INTRON HET FN3126-S Chr9 22255001 22273000 0 0 Deletion 17999 LOC_Os09g38730 26S protease regulatory subunit 6B, putative, expressed FN3126-S Chr9 22255001 22273000 0 0 Deletion 17999 LOC_Os09g38740 expressed protein FN3126-S Chr9 22255001 22273000 0 0 Deletion 17999 LOC_Os09g38750 expressed protein FN3126-S Chr9 22255001 22273000 0 0 Deletion 17999 LOC_Os09g38755 E3 ubiquitin-protein ligase HERC2, putative, expressed FN3126-S Chr9 22255001 22273000 0 0 Deletion 17999 LOC_Os09g38759 dihydroneopterin aldolase, putative, expressed FN3126-S Chr9 22255001 22273000 0 0 Deletion 17999 LOC_Os09g39110 vignain precursor, putative, expressed FN3126-S Chr9 2450001 2494000 0 0 Deletion 43999 LOC_Os09g04610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr9 2450001 2494000 0 0 Deletion 43999 LOC_Os09g04624 GDSL-like lipase/acylhydrolase, putative, expressed FN3126-S Chr9 2450001 2494000 0 0 Deletion 43999 LOC_Os09g04650 expressed protein FN3126-S Chr9 2450001 2494000 0 0 Deletion 43999 LOC_Os09g04660 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 2450001 2494000 0 0 Deletion 43999 LOC_Os09g04670 DAG protein, chloroplast precursor, putative, expressed FN3126-S Chr9 2450001 2494000 0 0 Deletion 43999 LOC_Os09g04960 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 2668001 2687000 0 0 Deletion 18999 LOC_Os09g04970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr9 2668001 2687000 0 0 Deletion 18999 LOC_Os09g04980 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 2668001 2687000 0 0 Deletion 18999 LOC_Os09g04990 cytoskeletal protein, putative, expressed FN3126-S Chr9 2668001 2687000 0 0 Deletion 18999 LOC_Os09g06550 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 2790173 2790173 0 0 Insertion 1 intergenic_region HET FN3126-S Chr9 2808001 2859000 0 0 Deletion 50999 FN3126-S Chr9 2916415 T-A 0 0 Single Base Substitution 0 INTRON HET FN3126-S Chr9 3112001 3125000 0 0 Deletion 12999 LOC_Os09g06560 WD domain, G-beta repeat domain containing protein, expressed FN3126-S Chr9 3112001 3125000 0 0 Deletion 12999 LOC_Os09g06770 RING finger protein, putative, expressed FN3126-S Chr9 3297001 3335000 0 0 Deletion 37999 LOC_Os09g06880 retrotransposon protein, putative, unclassified FN3126-S Chr9 3297001 3335000 0 0 Deletion 37999 LOC_Os09g06890 BTB/POZ domain containing protein, expressed FN3126-S Chr9 3297001 3335000 0 0 Deletion 37999 LOC_Os09g06900 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 3297001 3335000 0 0 Deletion 37999 LOC_Os09g06910 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 4000001 4034000 0 0 Deletion 33999 LOC_Os09g07880 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr9 4000001 4034000 0 0 Deletion 33999 LOC_Os09g07890 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr9 4000001 4034000 0 0 Deletion 33999 LOC_Os09g07900 ubiquitin-protein ligase 1, putative, expressed FN3126-S Chr9 4000001 4034000 0 0 Deletion 33999 LOC_Os09g07940 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 4070001 4088000 0 0 Deletion 17999 LOC_Os09g07940 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 4070001 4088000 0 0 Deletion 17999 LOC_Os09g07950 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 4070001 4088000 0 0 Deletion 17999 LOC_Os09g07960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr9 4172001 4187000 0 0 Deletion 14999 LOC_Os09g08100 cysteine proteinase inhibitor precursor, putative, expressed FN3126-S Chr9 4172001 4187000 0 0 Deletion 14999 LOC_Os09g08110 hypothetical protein FN3126-S Chr9 4232001 4250000 0 0 Deletion 17999 LOC_Os09g08170 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 4232001 4250000 0 0 Deletion 17999 LOC_Os09g08180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr9 4763001 4794000 0 0 Deletion 30999 LOC_Os09g08970 expressed protein FN3126-S Chr9 4763001 4794000 0 0 Deletion 30999 LOC_Os09g08980 retrotransposon protein, putative, unclassified FN3126-S Chr9 4763001 4794000 0 0 Deletion 30999 LOC_Os09g08990 cytochrome P450, putative, expressed FN3126-S Chr9 4763001 4794000 0 0 Deletion 30999 LOC_Os09g09000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr9 4763001 4794000 0 0 Deletion 30999 LOC_Os09g09150 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr9 4892001 4912000 0 0 Deletion 19999 LOC_Os09g09160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr9 4892001 4912000 0 0 Deletion 19999 LOC_Os09g09170 retrotransposon protein, putative, unclassified FN3126-S Chr9 4892001 4912000 0 0 Deletion 19999 LOC_Os09g09240 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr9 4952001 4992000 0 0 Deletion 39999 LOC_Os09g09250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr9 4952001 4992000 0 0 Deletion 39999 LOC_Os09g09260 expressed protein FN3126-S Chr9 4952001 4992000 0 0 Deletion 39999 LOC_Os09g09270 dihydroflavonol-4-reductase, putative FN3126-S Chr9 4952001 4992000 0 0 Deletion 39999 LOC_Os09g09290 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 4952001 4992000 0 0 Deletion 39999 LOC_Os09g09310 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 4952001 4992000 0 0 Deletion 39999 LOC_Os09g09320 nuclear transport factor, putative, expressed FN3126-S Chr9 4952001 4992000 0 0 Deletion 39999 LOC_Os09g10054 disease resistance protein RPS2, putative, expressed FN3126-S Chr9 5561001 5580000 0 0 Deletion 18999 LOC_Os09g10230 Skp1 family, dimerisation domain containing protein, expressed FN3126-S Chr9 5561001 5580000 0 0 Deletion 18999 LOC_Os09g10240 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 5561001 5580000 0 0 Deletion 18999 LOC_Os09g10820 oxidoreductase domain protein, putative, expressed FN3126-S Chr9 611001 618000 0 0 Deletion 6999 LOC_Os09g01980 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 6121001 6170000 0 0 Deletion 48999 LOC_Os09g11030 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 6121001 6170000 0 0 Deletion 48999 LOC_Os09g11040 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr9 6121001 6170000 0 0 Deletion 48999 LOC_Os09g11050 expressed protein FN3126-S Chr9 6121001 6170000 0 0 Deletion 48999 LOC_Os09g11060 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr9 6121001 6170000 0 0 Deletion 48999 LOC_Os09g11070 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr9 6121001 6170000 0 0 Deletion 48999 LOC_Os09g11080 retrotransposon protein, putative, Ty3-gypsy subclass FN3126-S Chr9 6121001 6170000 0 0 Deletion 48999 LOC_Os09g11090 expressed protein FN3126-S Chr9 6121001 6170000 0 0 Deletion 48999 LOC_Os09g11100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr9 6121001 6170000 0 0 Deletion 48999 LOC_Os09g11110 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 6121001 6170000 0 0 Deletion 48999 LOC_Os09g11120 expressed protein FN3126-S Chr9 6121001 6170000 0 0 Deletion 48999 LOC_Os09g11130 hypothetical protein FN3126-S Chr9 6121001 6170000 0 0 Deletion 48999 LOC_Os09g11320 expressed protein FN3126-S Chr9 6288001 6304000 0 0 Deletion 15999 LOC_Os09g11330 hypothetical protein FN3126-S Chr9 6288001 6304000 0 0 Deletion 15999 LOC_Os09g11350 retrotransposon protein, putative, unclassified FN3126-S Chr9 6288001 6304000 0 0 Deletion 15999 LOC_Os09g11400 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr9 6352001 6382000 0 0 Deletion 29999 LOC_Os09g11410 transposon protein, putative, CACTA, En/Spm sub-class FN3126-S Chr9 6352001 6382000 0 0 Deletion 29999 LOC_Os09g11420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr9 6352001 6382000 0 0 Deletion 29999 LOC_Os09g11440 expressed protein FN3126-S Chr9 6352001 6382000 0 0 Deletion 29999 LOC_Os09g11450 transporter, monovalent cation:proton antiporter-2 family, putative, expressed FN3126-S Chr9 663641 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3126-S Chr9 6650001 6733000 0 0 Deletion 82999 LOC_Os09g11880 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 6650001 6733000 0 0 Deletion 82999 LOC_Os09g11890 expressed protein FN3126-S Chr9 6650001 6733000 0 0 Deletion 82999 LOC_Os09g11900 expressed protein FN3126-S Chr9 6650001 6733000 0 0 Deletion 82999 LOC_Os09g11910 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3126-S Chr9 6650001 6733000 0 0 Deletion 82999 LOC_Os09g11920 transposon protein, putative, unclassified, expressed FN3126-S Chr9 6650001 6733000 0 0 Deletion 82999 LOC_Os09g11930 expressed protein FN3126-S Chr9 6650001 6733000 0 0 Deletion 82999 LOC_Os09g11940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr9 6650001 6733000 0 0 Deletion 82999 LOC_Os09g11950 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 6650001 6733000 0 0 Deletion 82999 LOC_Os09g11990 pc-fam-2 protein, putative, expressed FN3126-S Chr9 6699355 6699356 0 0 Deletion 1 upstream_gene_variant HET FN3126-S Chr9 6757001 6789000 0 0 Deletion 31999 LOC_Os09g12000 hypothetical protein FN3126-S Chr9 6757001 6789000 0 0 Deletion 31999 LOC_Os09g12010 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 6757001 6789000 0 0 Deletion 31999 LOC_Os09g12020 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 6757001 6789000 0 0 Deletion 31999 LOC_Os09g12400 expressed protein FN3126-S Chr9 7093001 7110000 0 0 Deletion 16999 LOC_Os09g12410 hAT dimerisation domain-containing protein, putative, expressed FN3126-S Chr9 7093001 7110000 0 0 Deletion 16999 LOC_Os09g12420 transposon protein, putative, unclassified, expressed FN3126-S Chr9 7093001 7110000 0 0 Deletion 16999 LOC_Os09g12490 retrotransposon protein, putative, unclassified FN3126-S Chr9 7178168 Chr1 39124942 0 Translocation 0 FN3126-S Chr9 7428001 7437000 0 0 Deletion 8999 LOC_Os09g13770 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 7512616 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g13020 expressed protein FN3126-S Chr9 8295001 8357000 0 0 Deletion 61999 LOC_Os09g14050 expressed protein FN3126-S Chr9 8295001 8357000 0 0 Deletion 61999 LOC_Os09g14060 disease resistance protein RPS2, putative, expressed FN3126-S Chr9 8295001 8357000 0 0 Deletion 61999 LOC_Os09g14070 retrotransposon protein, putative, Ty1-copia subclass FN3126-S Chr9 8295001 8357000 0 0 Deletion 61999 LOC_Os09g14080 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 8295001 8357000 0 0 Deletion 61999 LOC_Os09g14090 retrotransposon protein, putative, unclassified FN3126-S Chr9 8295001 8357000 0 0 Deletion 61999 LOC_Os09g14100 disease resistance protein RPS2, putative, expressed FN3126-S Chr9 8295001 8357000 0 0 Deletion 61999 LOC_Os09g14110 retrotransposon protein, putative, unclassified, expressed FN3126-S Chr9 8295001 8357000 0 0 Deletion 61999 LOC_Os09g14980 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3126-S Chr9 8557314 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3126-S Chr9 8557408 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3126-S Chr9 8557458 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3126-S Chr9 8990001 9014000 0 0 Deletion 23999 LOC_Os09g14990 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3126-S Chr9 8990001 9014000 0 0 Deletion 23999 LOC_Os09g15050 ent-kaurene synthase A, chloroplast precursor, putative, expressed FN3126-S Chr9 9116001 9136000 0 0 Deletion 19999 LOC_Os09g15070 expressed protein