FN3134-S Chr1 12594402 G-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3134-S Chr1 23145025 23145025 0 0 Insertion 1 upstream_gene_variant HET FN3134-S Chr10 12627915 Chr3 20025980 0 Translocation 0 FN3134-S Chr10 2038423 2038423 0 0 Insertion 1 intron_variant HET FN3134-S Chr10 4962632 4962632 0 0 Insertion 12 upstream_gene_variant HET FN3134-S Chr11 18081494 18081495 0 0 Deletion 1 upstream_gene_variant HET FN3134-S Chr11 21572406 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3134-S Chr11 22108205 22108207 0 0 Deletion 2 upstream_gene_variant HET FN3134-S Chr11 9624967 T-A 0 0 Single Base Substitution 0 INTRON HET FN3134-S Chr12 13563359 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3134-S Chr12 13563363 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3134-S Chr12 13563367 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3134-S Chr12 13675150 13675151 0 0 Deletion 1 INTERGENIC HOMO FN3134-S Chr12 13726513 13726514 0 0 Deletion 1 downstream_gene_variant HET FN3134-S Chr12 15396107 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3134-S Chr12 17844585 Chr8 11127999 0 Translocation 0 FN3134-S Chr12 22023465 Chr8 27373381 0 Translocation 0 FN3134-S Chr12 24547203 24547204 0 0 Deletion 1 upstream_gene_variant HET FN3134-S Chr12 26242690 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3134-S Chr12 26985460 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3134-S Chr12 2792546 2792547 0 0 Deletion 1 downstream_gene_variant HET FN3134-S Chr12 3262814 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3134-S Chr12 9719739 9719768 0 0 Deletion 29 frameshift_variant HET LOC_Os12g16970 retrotransposon protein, putative, unclassified, expressed FN3134-S Chr12 9790711 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3134-S Chr2 17691419 C-G 0 0 Single Base Substitution 0 INTRON HOMO FN3134-S Chr2 18373464 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3134-S Chr2 28494364 28494437 0 0 Deletion 73 intron_variant HET FN3134-S Chr3 10543935 T-A 0 0 Single Base Substitution 0 INTRON HET FN3134-S Chr3 10543936 C-A 0 0 Single Base Substitution 0 INTRON HET FN3134-S Chr3 25799421 Chr1 34369740 0 Translocation 0 FN3134-S Chr3 33059227 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g58060 XRN 5'-3' exonuclease N-terminus domain containing protein, expressed FN3134-S Chr3 35510392 35510395 0 0 Deletion 3 INTERGENIC HOMO FN3134-S Chr4 14599392 14599393 0 0 Deletion 1 upstream_gene_variant HET FN3134-S Chr4 1896600 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3134-S Chr4 29347256 29347257 0 0 Deletion 1 INTERGENIC HET FN3134-S Chr4 29710723 29710724 0 0 Deletion 1 intron_variant HET FN3134-S Chr4 6243780 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3134-S Chr5 10083649 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3134-S Chr5 21167599 21167599 0 0 Insertion 1 downstream_gene_variant HET FN3134-S Chr5 24205051 24205061 0 0 Deletion 10 INTERGENIC HOMO FN3134-S Chr5 25869146 25869146 0 0 Insertion 1 intron_variant HET FN3134-S Chr5 27409864 27409869 0 0 Deletion 5 downstream_gene_variant HET FN3134-S Chr5 7164129 A-G 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3134-S Chr5 8194568 8194568 0 0 Insertion 1 upstream_gene_variant HET FN3134-S Chr6 12543041 C-T 0 0 Single Base Substitution 0 INTRON HET FN3134-S Chr6 14186359 14360711 0 0 Inversion 174352 FN3134-S Chr6 14186364 14360719 0 0 Inversion 174355 FN3134-S Chr6 26024059 A-T 0 0 Single Base Substitution 0 INTRON HET FN3134-S Chr6 4290180 4290180 0 0 Insertion 1 downstream_gene_variant HET FN3134-S Chr6 633974 Chr5 25587829 0 Translocation 0 FN3134-S Chr6 7398168 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3134-S Chr7 13460055 Chr4 18033014 0 Translocation 0 FN3134-S Chr7 18872348 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3134-S Chr7 20316728 20316750 0 0 Deletion 22 INTERGENIC HOMO FN3134-S Chr7 23290897 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g38820 lectin-like receptor kinase, putative, expressed FN3134-S Chr7 4538627 Chr3 19557666 0 Translocation 0 FN3134-S Chr7 4539876 Chr3 19562475 0 Translocation 0 FN3134-S Chr7 4570015 4570016 0 0 Deletion 1 INTERGENIC HOMO FN3134-S Chr7 5987335 5987346 0 0 Deletion 11 INTERGENIC HOMO FN3134-S Chr7 7492773 7492796 0 0 Deletion 23 upstream_gene_variant HET FN3134-S Chr8 10913923 Chr5 9160325 0 Translocation 0 FN3134-S Chr8 16705185 16705186 0 0 Deletion 1 downstream_gene_variant HET FN3134-S Chr8 18695990 Chr4 405567 0 Translocation 0 FN3134-S Chr8 20929493 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3134-S Chr8 2449308 2449334 0 0 Deletion 26 downstream_gene_variant HET FN3134-S Chr8 26700460 26700460 0 0 Insertion 1 downstream_gene_variant HET FN3134-S Chr8 3780296 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3134-S Chr8 4793562 4793563 0 0 Deletion 1 upstream_gene_variant HET FN3134-S Chr8 6938082 6938082 0 0 Insertion 2 upstream_gene_variant HET FN3134-S Chr8 7893821 G-C 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN3134-S Chr8 8739977 8739978 0 0 Deletion 1 upstream_gene_variant HET FN3134-S Chr9 11292416 Chr4 27474044 0 Translocation 0 FN3134-S Chr9 14188837 14188838 0 0 Deletion 1 frameshift_variant HET LOC_Os09g23810 retrotransposon protein, putative, unclassified FN3134-S Chr9 15309605 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN3134-S Chr9 16421330 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3134-S Chr9 19867390 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3134-S Chr9 22299752 Chr4 3249327 0 Translocation 0