FN3135-S Chr1 11177484 A-C 0 0 Single Base Substitution 0 INTRON HET FN3135-S Chr1 11333649 11333652 0 0 Deletion 3 inframe_deletion HET LOC_Os01g19960 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3135-S Chr1 11333937 11333939 0 0 Deletion 2 intron_variant HET FN3135-S Chr1 20693277 20693301 0 0 Deletion 24 disruptive_inframe_deletion HET LOC_Os01g37080 retrotransposon protein, putative, unclassified, expressed FN3135-S Chr1 28356261 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3135-S Chr1 29814868 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3135-S Chr1 34514306 G-A 0 0 Single Base Substitution 0 INTRON HET FN3135-S Chr1 35133415 A-G 0 0 Single Base Substitution 0 INTRON HET FN3135-S Chr1 41396385 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3135-S Chr1 6167515 6167521 0 0 Deletion 6 upstream_gene_variant HET FN3135-S Chr1 7974337 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g14220 expressed protein FN3135-S Chr10 15253217 Chr5 14410538 0 Translocation 0 FN3135-S Chr10 15253459 Chr9 11335718 0 Translocation 0 LOC_Os09g18490 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3135-S Chr10 15253466 Chr9 11111503 0 Translocation 0 FN3135-S Chr10 18184005 Chr9 16564128 0 Translocation 0 FN3135-S Chr10 21292186 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3135-S Chr10 7264602 7264612 0 0 Deletion 10 upstream_gene_variant HET FN3135-S Chr10 7671058 7671061 0 0 Deletion 3 upstream_gene_variant HET FN3135-S Chr10 8377240 C-G 0 0 Single Base Substitution 0 INTRON HOMO FN3135-S Chr11 1412943 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os11g03640 expressed protein FN3135-S Chr11 15041502 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3135-S Chr11 1814570 Chr5 2083393 0 Translocation 0 FN3135-S Chr11 21229322 21229323 0 0 Deletion 1 INTRON HOMO FN3135-S Chr11 21229349 A-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3135-S Chr11 26698918 26698919 0 0 Deletion 1 upstream_gene_variant HET FN3135-S Chr11 27707151 27707152 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os11g45790 NB-ARC domain containing protein, expressed FN3135-S Chr11 3017837 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3135-S Chr11 5729896 G-A 0 0 Single Base Substitution 0 INTRON HET FN3135-S Chr12 11388048 Chr7 1638446 0 Translocation 0 LOC_Os07g03910 transporter, major facilitator superfamily domain containing protein, expressed FN3135-S Chr12 11626559 11626559 0 0 Insertion 1 downstream_gene_variant HET FN3135-S Chr12 15321139 Chr11 16186543 0 Translocation 0 FN3135-S Chr12 18942606 Chr10 15253635 0 Translocation 0 FN3135-S Chr12 5362248 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3135-S Chr12 8036992 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3135-S Chr12 9856110 9856110 0 0 Insertion 1 upstream_gene_variant HET FN3135-S Chr12 9941469 C-T 0 0 Single Base Substitution 0 INTRON HET FN3135-S Chr2 139163 139173 0 0 Deletion 10 upstream_gene_variant HET FN3135-S Chr2 17782643 G-T 0 0 Single Base Substitution 0 INTRON HET FN3135-S Chr2 2359559 2359560 0 0 Deletion 1 downstream_gene_variant HET FN3135-S Chr2 26059812 G-A 0 0 Single Base Substitution 0 INTRON HET FN3135-S Chr2 31628130 31628133 0 0 Deletion 3 INTERGENIC HOMO FN3135-S Chr2 32444736 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3135-S Chr2 3322595 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3135-S Chr2 3322596 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3135-S Chr3 13817225 13817226 0 0 Deletion 1 frameshift_variant HET LOC_Os03g24270 transposon protein, putative, unclassified, expressed FN3135-S Chr3 1708255 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3135-S Chr3 18699629 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3135-S Chr3 20923362 20923363 0 0 Deletion 1 upstream_gene_variant HET FN3135-S Chr3 21028257 21028267 0 0 Deletion 10 INTERGENIC HOMO FN3135-S Chr3 2219091 G-A 0 0 Single Base Substitution 0 INTRON HET FN3135-S Chr3 23329001 23407000 0 0 Deletion 77999 LOC_Os03g42000 retrotransposon protein, putative, Ty3-gypsy subclass FN3135-S Chr3 23329001 23407000 0 0 Deletion 77999 LOC_Os03g42010 DNA-directed polymerase, putative, expressed FN3135-S Chr3 23329001 23407000 0 0 Deletion 77999 LOC_Os03g42020 calcium-transporting ATPase, plasma membrane-type, putative, expressed FN3135-S Chr3 23329001 23407000 0 0 Deletion 77999 LOC_Os03g42030 expressed protein FN3135-S Chr3 23329001 23407000 0 0 Deletion 77999 LOC_Os03g42040 HEAT repeat family protein, putative, expressed FN3135-S Chr3 23329001 23407000 0 0 Deletion 77999 LOC_Os03g42050 exportin-7-A, putative, expressed FN3135-S Chr3 23329001 23407000 0 0 Deletion 77999 LOC_Os03g42060 expressed protein FN3135-S Chr3 23329001 23407000 0 0 Deletion 77999 LOC_Os03g42950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3135-S Chr3 23329281 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g41990 retrotransposon protein, putative, unclassified, expressed FN3135-S Chr3 23329282 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g41990 retrotransposon protein, putative, unclassified, expressed FN3135-S Chr3 23393302 23393303 0 0 Deletion 1 intergenic_region HET FN3135-S Chr3 23905928 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3135-S Chr3 28984926 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3135-S Chr3 32661047 32661063 0 0 Deletion 16 INTERGENIC HOMO FN3135-S Chr3 34214120 34214120 0 0 Insertion 2 INTERGENIC HET FN3135-S Chr3 4932893 4932894 0 0 Deletion 1 upstream_gene_variant HET FN3135-S Chr4 11101440 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g19910 retrotransposon protein, putative, unclassified, expressed FN3135-S Chr4 17226888 17226897 0 0 Deletion 9 downstream_gene_variant HET FN3135-S Chr4 22001786 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3135-S Chr4 24428796 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3135-S Chr4 2657832 2657868 0 0 Deletion 36 inframe_deletion HET LOC_Os04g05340 retrotransposon protein, putative, unclassified FN3135-S Chr4 32872059 32872064 0 0 Deletion 5 FRAME_SHIFT HOMO LOC_Os04g55300 hypothetical protein FN3135-S Chr4 566557 566558 0 0 Deletion 1 frameshift_variant HET LOC_Os04g01900 transposon protein, putative, unclassified, expressed FN3135-S Chr4 7871807 Chr2 34491837 0 Translocation 0 FN3135-S Chr5 10941960 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3135-S Chr5 14301024 A-C 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN3135-S Chr5 15306126 C-A 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN3135-S Chr5 27089445 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3135-S Chr5 3252867 A-G 0 0 Single Base Substitution 0 INTRON HET FN3135-S Chr5 3720001 3744000 0 0 Deletion 23999 LOC_Os05g07080 S-domain receptor-like protein kinase, putative, expressed FN3135-S Chr5 3720001 3744000 0 0 Deletion 23999 LOC_Os05g07090 acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed FN3135-S Chr5 3720001 3744000 0 0 Deletion 23999 LOC_Os05g07120 basic helix-loop-helix, putative, expressed FN3135-S Chr5 3749001 3792000 0 0 Deletion 42999 LOC_Os05g07130 6PF-2-K/Fru-2,6-P2ASE liver isozyme, putative, expressed FN3135-S Chr5 3749001 3792000 0 0 Deletion 42999 LOC_Os05g07140 zinc finger, C3HC4 type domain containing protein, expressed FN3135-S Chr5 3749001 3792000 0 0 Deletion 42999 LOC_Os05g07170 expressed protein FN3135-S Chr5 3749001 3792000 0 0 Deletion 42999 LOC_Os05g07180 expressed protein FN3135-S Chr5 3749001 3792000 0 0 Deletion 42999 LOC_Os05g08060 expressed protein FN3135-S Chr6 11795824 11795827 0 0 Deletion 3 CODON_DELETION HET LOC_Os06g20530 expressed protein FN3135-S Chr6 14407681 G-A 0 0 Single Base Substitution 0 INTRON HET FN3135-S Chr6 16927413 16927413 0 0 Insertion 1 frameshift_variant HET LOC_Os06g29540 expressed protein FN3135-S Chr6 22218954 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3135-S Chr6 22218955 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3135-S Chr6 24086522 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3135-S Chr6 24311091 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3135-S Chr6 28170942 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3135-S Chr6 3790932 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3135-S Chr6 5489249 5489252 0 0 Deletion 3 INTERGENIC HET FN3135-S Chr6 634833 Chr2 17757429 0 Translocation 0 LOC_Os06g02130 G-protein alpha subunit, putative, expressed FN3135-S Chr6 9304704 9304708 0 0 Deletion 4 upstream_gene_variant HET FN3135-S Chr6 9538138 9538146 0 0 Deletion 8 INTERGENIC HET FN3135-S Chr7 13127262 13127263 0 0 Deletion 1 upstream_gene_variant HET FN3135-S Chr7 28680618 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3135-S Chr8 13336429 13336430 0 0 Deletion 1 INTERGENIC HOMO FN3135-S Chr8 24221303 24221320 0 0 Deletion 17 INTERGENIC HOMO FN3135-S Chr8 24362837 24362847 0 0 Deletion 10 INTERGENIC HOMO FN3135-S Chr8 25036039 25036047 0 0 Deletion 8 FRAME_SHIFT HOMO LOC_Os08g39570 Leucine Rich Repeat family protein, expressed FN3135-S Chr8 4172132 Chr6 24569078 0 Translocation 0 FN3135-S Chr8 744329 G-A 0 0 Single Base Substitution 0 INTRON HET FN3135-S Chr8 9895352 Chr7 18139935 0 Translocation 0 LOC_Os07g30650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3135-S Chr9 11111373 Chr3 23330135 0 Translocation 0 LOC_Os03g41990 retrotransposon protein, putative, unclassified, expressed FN3135-S Chr9 11111500 Chr3 23404452 0 Translocation 0 FN3135-S Chr9 4237063 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g08180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed