FN3142-S Chr1 1213458 1213458 0 0 Insertion 6 downstream_gene_variant HET FN3142-S Chr1 13733220 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr1 16279541 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3142-S Chr1 30178145 30178145 0 0 Insertion 12 upstream_gene_variant HET FN3142-S Chr1 33068416 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr1 35286794 35286802 0 0 Deletion 8 INTERGENIC HET FN3142-S Chr1 36043972 36043975 0 0 Deletion 3 INTERGENIC HOMO FN3142-S Chr1 7629086 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr10 13465883 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr10 17922537 17922537 0 0 Insertion 2 INTERGENIC HET FN3142-S Chr10 4089015 Chr7 28750046 0 Translocation 0 FN3142-S Chr10 6651082 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr10 9442503 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr11 16491822 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr11 16608607 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3142-S Chr11 18372525 18372525 0 0 Insertion 48 downstream_gene_variant HET FN3142-S Chr11 5331010 5331019 0 0 Deletion 9 INTERGENIC HOMO FN3142-S Chr11 8180483 8180487 0 0 Deletion 4 intron_variant HET FN3142-S Chr12 10956077 10956094 0 0 Deletion 17 INTERGENIC HOMO FN3142-S Chr12 13522740 13522740 0 0 Insertion 7 downstream_gene_variant HET FN3142-S Chr12 13667914 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3142-S Chr12 13690092 Chr6 13664716 0 Translocation 0 LOC_Os06g23400 expressed protein FN3142-S Chr12 13690437 Chr6 13664719 0 Translocation 0 LOC_Os06g23400 expressed protein FN3142-S Chr12 16750297 16750298 0 0 Deletion 1 upstream_gene_variant HET FN3142-S Chr12 23018245 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr12 3969536 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g07840 dehydration response related protein, putative, expressed FN3142-S Chr12 5197001 5293000 0 0 Deletion 95999 LOC_Os12g09820 retrotransposon protein, putative, unclassified, expressed FN3142-S Chr12 5197001 5293000 0 0 Deletion 95999 LOC_Os12g09840 retrotransposon protein, putative, unclassified, expressed FN3142-S Chr12 5197001 5293000 0 0 Deletion 95999 LOC_Os12g09850 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3142-S Chr12 5197001 5293000 0 0 Deletion 95999 LOC_Os12g09860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3142-S Chr12 5197001 5293000 0 0 Deletion 95999 LOC_Os12g09870 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3142-S Chr12 5197001 5293000 0 0 Deletion 95999 LOC_Os12g09880 expressed protein FN3142-S Chr12 5197001 5293000 0 0 Deletion 95999 LOC_Os12g09890 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3142-S Chr12 5197001 5293000 0 0 Deletion 95999 LOC_Os12g09900 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3142-S Chr12 5197001 5293000 0 0 Deletion 95999 LOC_Os12g09910 retrotransposon protein, putative, Ty1-copia subclass FN3142-S Chr12 5197001 5293000 0 0 Deletion 95999 LOC_Os12g09920 retrotransposon protein, putative, unclassified FN3142-S Chr12 5197001 5293000 0 0 Deletion 95999 LOC_Os12g09930 retrotransposon protein, putative, unclassified, expressed FN3142-S Chr12 5197001 5293000 0 0 Deletion 95999 LOC_Os12g09940 retrotransposon protein, putative, unclassified FN3142-S Chr12 5197001 5293000 0 0 Deletion 95999 LOC_Os12g09954 retrotransposon, putative, centromere-specific, expressed FN3142-S Chr12 5197001 5293000 0 0 Deletion 95999 LOC_Os12g09970 retrotransposon protein, putative, unclassified FN3142-S Chr12 5197001 5293000 0 0 Deletion 95999 LOC_Os12g09990 retrotransposon protein, putative, unclassified, expressed FN3142-S Chr12 5197001 5293000 0 0 Deletion 95999 LOC_Os12g14570 hypothetical protein FN3142-S Chr12 5275877 5275877 0 0 Insertion 1 intergenic_region HET FN3142-S Chr12 8569554 G-A 0 0 Single Base Substitution 0 INTRON HET FN3142-S Chr2 1381721 A-C 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN3142-S Chr2 18324830 G-A 0 0 Single Base Substitution 0 START_LOST HOMO LOC_Os02g30750 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3142-S Chr2 24542078 24542079 0 0 Deletion 1 downstream_gene_variant HET FN3142-S Chr2 30042744 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr2 34048036 34048036 0 0 Insertion 6 INTERGENIC HET FN3142-S Chr2 4760785 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr3 23662304 23789663 0 0 Inversion 127359 LOC_Os03g42730 expressed protein FN3142-S Chr3 23662304 23789667 0 0 Inversion 127363 LOC_Os03g42730 expressed protein FN3142-S Chr3 33451374 33451375 0 0 Deletion 1 INTERGENIC HOMO FN3142-S Chr3 4963721 4963721 0 0 Insertion 4 upstream_gene_variant HET FN3142-S Chr3 6025843 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr4 11441474 11441516 0 0 Deletion 42 upstream_gene_variant HET FN3142-S Chr4 11736055 12167309 0 0 Inversion 431254 FN3142-S Chr4 13163610 13163612 0 0 Deletion 2 INTERGENIC HET FN3142-S Chr4 14540639 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr4 15294663 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr4 15294894 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr4 15946949 T-C 0 0 Single Base Substitution 0 INTRON HET FN3142-S Chr4 17272864 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr4 19161913 19161913 0 0 Insertion 10 upstream_gene_variant HET FN3142-S Chr4 24591265 24591265 0 0 Insertion 1 INTERGENIC HET FN3142-S Chr4 33008963 A-G 0 0 Single Base Substitution 0 INTRON HET FN3142-S Chr4 3325195 3325207 0 0 Deletion 12 INTRON HET FN3142-S Chr4 4850244 4850267 0 0 Deletion 23 upstream_gene_variant HET FN3142-S Chr4 5700871 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr5 1508747 1508748 0 0 Deletion 1 upstream_gene_variant HET FN3142-S Chr5 17475322 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3142-S Chr5 23854042 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g40680 FAR1 family protein, expressed FN3142-S Chr6 13233905 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr6 13233906 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr6 13233911 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr6 17050255 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr6 26052825 26052827 0 0 Deletion 2 frameshift_variant HET LOC_Os06g43340 retrotransposon protein, putative, unclassified, expressed FN3142-S Chr6 26628737 26628737 0 0 Insertion 1 upstream_gene_variant HET FN3142-S Chr6 30632948 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr6 30632949 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr6 9295863 9295875 0 0 Deletion 12 disruptive_inframe_deletion HET LOC_Os06g16310 retrotransposon protein, putative, unclassified, expressed FN3142-S Chr7 1345208 1345208 0 0 Insertion 9 downstream_gene_variant HET FN3142-S Chr7 19038416 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g32010 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed FN3142-S Chr7 2305201 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr7 29628361 29628361 0 0 Insertion 12 upstream_gene_variant HET FN3142-S Chr7 4531044 4531048 0 0 Deletion 4 INTRON HET FN3142-S Chr7 5167436 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr7 580001 710000 0 0 Deletion 129999 LOC_Os07g01950 expressed protein FN3142-S Chr7 580001 710000 0 0 Deletion 129999 LOC_Os07g01960 hypothetical protein FN3142-S Chr7 580001 710000 0 0 Deletion 129999 LOC_Os07g01970 retrotransposon protein, putative, unclassified, expressed FN3142-S Chr7 580001 710000 0 0 Deletion 129999 LOC_Os07g01990 expressed protein FN3142-S Chr7 580001 710000 0 0 Deletion 129999 LOC_Os07g02000 expressed protein FN3142-S Chr7 580001 710000 0 0 Deletion 129999 LOC_Os07g02030 thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed FN3142-S Chr7 580001 710000 0 0 Deletion 129999 LOC_Os07g02040 expressed protein FN3142-S Chr7 580001 710000 0 0 Deletion 129999 LOC_Os07g02050 retrotransposon protein, putative, Ty3-gypsy subclass FN3142-S Chr7 580001 710000 0 0 Deletion 129999 LOC_Os07g02060 WRKY29, expressed FN3142-S Chr7 580001 710000 0 0 Deletion 129999 LOC_Os07g02070 retrotransposon protein, putative, Ty3-gypsy subclass FN3142-S Chr7 580001 710000 0 0 Deletion 129999 LOC_Os07g02080 expressed protein FN3142-S Chr7 580001 710000 0 0 Deletion 129999 LOC_Os07g02090 Ser/Thr protein phosphatase family protein, putative, expressed FN3142-S Chr7 580001 710000 0 0 Deletion 129999 LOC_Os07g02100 flavin-containing monooxygenase family protein, putative, expressed FN3142-S Chr7 580001 710000 0 0 Deletion 129999 LOC_Os07g02110 expressed protein FN3142-S Chr7 580001 710000 0 0 Deletion 129999 LOC_Os07g02120 flavin-containing monooxygenase family protein, putative, expressed FN3142-S Chr7 580001 710000 0 0 Deletion 129999 LOC_Os07g02130 flavin-containing monooxygenase family protein, putative, expressed FN3142-S Chr7 580001 710000 0 0 Deletion 129999 LOC_Os07g02140 flavin-containing monooxygenase family protein, putative, expressed FN3142-S Chr7 580001 710000 0 0 Deletion 129999 LOC_Os07g02150 3-5 exonuclease domain-containing protein, putative, expressed FN3142-S Chr7 580001 710000 0 0 Deletion 129999 LOC_Os07g02170 3-5 exonuclease domain-containing protein, putative, expressed FN3142-S Chr7 580001 710000 0 0 Deletion 129999 LOC_Os07g02180 3-5 exonuclease domain-containing protein, putative, expressed FN3142-S Chr7 580001 710000 0 0 Deletion 129999 LOC_Os07g02192 expressed protein FN3142-S Chr7 580001 710000 0 0 Deletion 129999 LOC_Os07g02200 plastocyanin-like domain containing protein, putative, expressed FN3142-S Chr7 580001 710000 0 0 Deletion 129999 LOC_Os07g02210 eukaryotic translation initiation factor 5A, putative, expressed FN3142-S Chr7 580001 710000 0 0 Deletion 129999 LOC_Os07g02230 retrotransposon protein, putative, unclassified, expressed FN3142-S Chr7 580001 710000 0 0 Deletion 129999 LOC_Os07g07360 expressed protein FN3142-S Chr7 5829004 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g10740 polygalacturonase, putative, expressed FN3142-S Chr7 6412755 6412766 0 0 Deletion 11 upstream_gene_variant HET FN3142-S Chr7 7205373 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr7 9544270 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr7 9544271 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr8 14560175 14560235 0 0 Deletion 60 upstream_gene_variant HET FN3142-S Chr8 16018975 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g26280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3142-S Chr8 22804004 Chr3 5888256 0 Translocation 0 FN3142-S Chr8 7854022 7854023 0 0 Deletion 1 upstream_gene_variant HET FN3142-S Chr9 12703076 12703076 0 0 Insertion 2 INTERGENIC HET FN3142-S Chr9 12994086 12994091 0 0 Deletion 5 INTERGENIC HET FN3142-S Chr9 13357949 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3142-S Chr9 14334102 14334102 0 0 Insertion 1 upstream_gene_variant HET FN3142-S Chr9 17675659 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3142-S Chr9 3882147 3882148 0 0 Deletion 1 upstream_gene_variant HET FN3142-S Chr9 4919476 4919476 0 0 Insertion 1 upstream_gene_variant HET FN3142-S Chr9 8621564 8621566 0 0 Deletion 2 INTERGENIC HET