FN3145-S Chr1 10076290 10076293 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os01g18000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3145-S Chr1 11102823 11349742 0 0 Inversion 246919 FN3145-S Chr1 11348001 11381000 0 0 Deletion 32999 LOC_Os01g19980 hypothetical protein FN3145-S Chr1 11348001 11381000 0 0 Deletion 32999 LOC_Os01g19990 expressed protein FN3145-S Chr1 11348001 11381000 0 0 Deletion 32999 LOC_Os01g20000 expressed protein FN3145-S Chr1 11348001 11381000 0 0 Deletion 32999 LOC_Os01g20010 expressed protein FN3145-S Chr1 11348001 11381000 0 0 Deletion 32999 LOC_Os01g20020 hypothetical protein FN3145-S Chr1 11348001 11381000 0 0 Deletion 32999 LOC_Os01g20030 expressed protein FN3145-S Chr1 11348001 11381000 0 0 Deletion 32999 LOC_Os01g20208 expressed protein FN3145-S Chr1 17774692 17774693 0 0 Deletion 1 upstream_gene_variant HET FN3145-S Chr1 32130880 T-A 0 0 Single Base Substitution 0 INTRON HET FN3145-S Chr1 32130881 C-T 0 0 Single Base Substitution 0 INTRON HET FN3145-S Chr1 32403175 32403179 0 0 Deletion 4 upstream_gene_variant HET FN3145-S Chr1 33448001 33462000 0 0 Deletion 13999 LOC_Os01g57854 pectinesterase, putative, expressed FN3145-S Chr1 33448001 33462000 0 0 Deletion 13999 LOC_Os01g57870 disease resistance protein RPS2, putative, expressed FN3145-S Chr1 33448001 33462000 0 0 Deletion 13999 LOC_Os01g58640 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed FN3145-S Chr1 39492207 39492207 0 0 Insertion 2 INTERGENIC HET FN3145-S Chr1 39812491 C-T 0 0 Single Base Substitution 0 INTRON HET FN3145-S Chr10 10314347 Chr4 24024459 0 Translocation 0 FN3145-S Chr10 13397231 C-A 0 0 Single Base Substitution 0 INTRON HET FN3145-S Chr10 17061001 17083000 0 0 Deletion 21999 LOC_Os10g32570 tRNA synthetase class I family protein, putative, expressed FN3145-S Chr10 17061001 17083000 0 0 Deletion 21999 LOC_Os10g32580 GDSL-like lipase/acylhydrolase, putative, expressed FN3145-S Chr10 17061001 17083000 0 0 Deletion 21999 LOC_Os10g32590 universal stress protein domain containing protein, putative, expressed FN3145-S Chr10 17061001 17083000 0 0 Deletion 21999 LOC_Os10g32600 MYB family transcription factor, putative, expressed FN3145-S Chr10 17061001 17083000 0 0 Deletion 21999 LOC_Os10g33210 peptide transporter PTR3-A, putative, expressed FN3145-S Chr10 17375154 17375165 0 0 Deletion 11 INTRON HOMO FN3145-S Chr10 18925465 18925489 0 0 Deletion 24 disruptive_inframe_deletion HET LOC_Os10g35400 retrotransposon protein, putative, unclassified, expressed FN3145-S Chr10 5909001 5936000 0 0 Deletion 26999 LOC_Os10g10724 expressed protein FN3145-S Chr10 5909001 5936000 0 0 Deletion 26999 LOC_Os10g10810 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3145-S Chr10 7831329 Chr2 17726625 0 Translocation 0 LOC_Os02g29790 retrotransposon, putative, centromere-specific, expressed FN3145-S Chr10 7831329 Chr2 17726625 0 Translocation 0 LOC_Os10g14940 retrotransposon, putative, centromere-specific, expressed FN3145-S Chr11 11009084 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr11 13468555 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr11 14753919 Chr6 9352429 0 Translocation 0 FN3145-S Chr11 15422684 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g26850 erythronate-4-phosphate dehydrogenase, putative, expressed FN3145-S Chr11 15567450 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr11 16096578 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g28000 expressed protein FN3145-S Chr11 18691573 G-C 0 0 Single Base Substitution 0 INTRON HET FN3145-S Chr11 22843747 22843748 0 0 Deletion 1 downstream_gene_variant HET FN3145-S Chr11 24776877 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr11 26202358 26202361 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os11g43400 transposon protein, putative, unclassified FN3145-S Chr11 28094151 Chr3 1075626 0 Translocation 0 FN3145-S Chr12 10315826 10315827 0 0 Deletion 1 upstream_gene_variant HET FN3145-S Chr12 11006322 Chr5 7925394 0 Translocation 0 FN3145-S Chr12 1181824 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr12 14305335 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr12 17797590 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr12 17797595 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr12 17835352 17835352 0 0 Insertion 4 INTERGENIC HET FN3145-S Chr12 25748407 Chr4 21768486 0 Translocation 0 LOC_Os04g35720 expressed protein FN3145-S Chr12 26979106 Chr8 17178919 0 Translocation 0 FN3145-S Chr12 4550555 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr12 6215708 Chr2 1697512 0 Translocation 0 FN3145-S Chr12 7872156 Chr4 17768577 0 Translocation 0 FN3145-S Chr12 8980210 8980211 0 0 Deletion 1 intergenic_region HET FN3145-S Chr12 9527765 9527767 0 0 Deletion 2 upstream_gene_variant HET FN3145-S Chr2 12143001 12158000 0 0 Deletion 14999 LOC_Os02g20600 BTB/POZ domain containing protein, putative, expressed FN3145-S Chr2 12143001 12158000 0 0 Deletion 14999 LOC_Os02g20620 speckle-type POZ protein, putative, expressed FN3145-S Chr2 12143001 12158000 0 0 Deletion 14999 LOC_Os02g20630 retrotransposon protein, putative, unclassified, expressed FN3145-S Chr2 12143001 12158000 0 0 Deletion 14999 LOC_Os02g20640 retrotransposon protein, putative, unclassified, expressed FN3145-S Chr2 12162001 12254000 0 0 Deletion 91999 LOC_Os02g20650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3145-S Chr2 12162001 12254000 0 0 Deletion 91999 LOC_Os02g20660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3145-S Chr2 12162001 12254000 0 0 Deletion 91999 LOC_Os02g20670 retrotransposon protein, putative, unclassified FN3145-S Chr2 12162001 12254000 0 0 Deletion 91999 LOC_Os02g20690 speckle-type POZ protein, putative FN3145-S Chr2 12162001 12254000 0 0 Deletion 91999 LOC_Os02g20700 expressed protein FN3145-S Chr2 12162001 12254000 0 0 Deletion 91999 LOC_Os02g20710 expressed protein FN3145-S Chr2 12162001 12254000 0 0 Deletion 91999 LOC_Os02g20720 MBTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3145-S Chr2 12162001 12254000 0 0 Deletion 91999 LOC_Os02g20729 expressed protein FN3145-S Chr2 12162001 12254000 0 0 Deletion 91999 LOC_Os02g21520 chalcone isomerase 3, putative, expressed FN3145-S Chr2 19419067 19419144 0 0 Deletion 77 downstream_gene_variant HET FN3145-S Chr2 26840177 26840177 0 0 Insertion 1 upstream_gene_variant HET FN3145-S Chr2 27577232 27577234 0 0 Deletion 2 INTERGENIC HOMO FN3145-S Chr2 27589543 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr2 28591406 28591407 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os02g46870 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3145-S Chr2 29291335 Chr1 11102806 0 Translocation 0 LOC_Os02g47880 tetratricopeptide repeat domain containing protein, expressed FN3145-S Chr2 29291358 Chr1 11101343 0 Translocation 0 LOC_Os01g19590 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3145-S Chr2 29291358 Chr1 11101343 0 Translocation 0 LOC_Os02g47880 tetratricopeptide repeat domain containing protein, expressed FN3145-S Chr2 32185943 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3145-S Chr2 8652774 8652780 0 0 Deletion 6 upstream_gene_variant HET FN3145-S Chr2 8709225 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr3 11044541 11044546 0 0 Deletion 5 INTERGENIC HET FN3145-S Chr3 11684262 11684265 0 0 Deletion 3 CODON_CHANGE_PLUS_CODON_DELETION HET LOC_Os03g20650 bZIP transcription factor domain containing protein, expressed FN3145-S Chr3 1239290 Chr2 32366705 0 Translocation 0 FN3145-S Chr3 16247530 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr3 17857625 Chr1 27257035 0 Translocation 0 FN3145-S Chr3 17857630 Chr1 27257180 0 Translocation 0 FN3145-S Chr3 17921864 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3145-S Chr3 18175295 18175295 0 0 Insertion 1 frameshift_variant HET LOC_Os03g31770 transposon protein, putative, unclassified FN3145-S Chr3 22297805 22297805 0 0 Insertion 2 INTERGENIC HET FN3145-S Chr3 2251712 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3145-S Chr3 23107666 Chr1 3221995 0 Translocation 0 FN3145-S Chr3 25195675 25195675 0 0 Insertion 16 upstream_gene_variant HET FN3145-S Chr3 25927164 25927170 0 0 Deletion 6 INTERGENIC HOMO FN3145-S Chr3 3518715 3518716 0 0 Deletion 1 INTERGENIC HOMO FN3145-S Chr3 35224924 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr3 35224925 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr3 8597692 8597702 0 0 Deletion 10 INTRON HOMO FN3145-S Chr4 10966771 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3145-S Chr4 11158336 11158337 0 0 Deletion 1 downstream_gene_variant HET FN3145-S Chr4 13538990 13538991 0 0 Deletion 1 upstream_gene_variant HET FN3145-S Chr4 1516055 1516055 0 0 Insertion 1 upstream_gene_variant HET FN3145-S Chr4 17143631 17143654 0 0 Deletion 23 upstream_gene_variant HET FN3145-S Chr4 1920041 A-T 0 0 Single Base Substitution 0 STOP_GAINED HOMO LOC_Os04g04150 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3145-S Chr4 2085576 Chr1 27847897 0 Translocation 0 FN3145-S Chr4 23946267 23946268 0 0 Deletion 1 INTRON HOMO FN3145-S Chr4 30216305 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g51040 OsWAK50 - OsWAK receptor-like protein kinase, expressed FN3145-S Chr4 34569086 T-C 0 0 Single Base Substitution 0 INTRON HET FN3145-S Chr4 9250514 G-C 0 0 Single Base Substitution 0 INTRON HET FN3145-S Chr5 11597718 C-T 0 0 Single Base Substitution 0 INTRON HET FN3145-S Chr5 12065517 12065519 0 0 Deletion 2 INTERGENIC HET FN3145-S Chr5 16247996 Chr1 3244571 0 Translocation 0 FN3145-S Chr5 17227409 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr5 22512001 22530000 0 0 Deletion 17999 LOC_Os05g38410 laccase precursor protein, putative, expressed FN3145-S Chr5 22512001 22530000 0 0 Deletion 17999 LOC_Os05g39100 hypothetical protein FN3145-S Chr5 23712726 23712727 0 0 Deletion 1 INTERGENIC HET FN3145-S Chr5 28426516 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3145-S Chr5 381977 1200592 0 0 Inversion 818615 LOC_Os05g03070 transporter, putative, expressed FN3145-S Chr5 4324974 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr5 4419569 4419570 0 0 Deletion 1 upstream_gene_variant HET FN3145-S Chr5 924906 924907 0 0 Deletion 1 upstream_gene_variant HET FN3145-S Chr5 9578481 9578482 0 0 Deletion 1 upstream_gene_variant HET FN3145-S Chr6 16596526 A-T 0 0 Single Base Substitution 0 INTRON HET FN3145-S Chr6 18108651 18108651 0 0 Insertion 1 downstream_gene_variant HET FN3145-S Chr6 20127119 20127120 0 0 Deletion 1 upstream_gene_variant HET FN3145-S Chr6 20485794 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3145-S Chr6 28036444 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr6 500126 C-A 0 0 Single Base Substitution 0 INTRON HET FN3145-S Chr6 8549498 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr7 13184355 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr7 13337529 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr7 14047645 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr7 14844217 14844218 0 0 Deletion 1 upstream_gene_variant HET FN3145-S Chr7 17743065 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr7 18752786 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr7 23443523 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr7 7677868 7677869 0 0 Deletion 1 intron_variant HET FN3145-S Chr7 9604084 9604084 0 0 Insertion 1 downstream_gene_variant HET FN3145-S Chr8 10804908 G-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3145-S Chr8 10804909 C-G 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3145-S Chr8 14613361 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr8 16273605 Chr6 18063972 0 Translocation 0 LOC_Os08g26760 retrotransposon protein, putative, unclassified, expressed FN3145-S Chr8 18621274 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g30270 transposon protein, putative, unclassified FN3145-S Chr8 23425182 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr8 23530689 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr8 27607640 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr8 4036661 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3145-S Chr8 7289747 Chr5 11351938 0 Translocation 0 LOC_Os05g19530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3145-S Chr8 7289747 Chr5 11351938 0 Translocation 0 LOC_Os08g12370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3145-S Chr9 5877833 G-A 0 0 Single Base Substitution 0 INTRON HET FN3145-S Chr9 8083789 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO