FN3146-S Chr1 10788053 10788056 0 0 Deletion 3 inframe_deletion HET LOC_Os01g19090 retrotransposon protein, putative, Ty3-gypsy subclass FN3146-S Chr1 13803024 G-C 0 0 Single Base Substitution 0 INTRON HOMO FN3146-S Chr1 16607559 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3146-S Chr1 29750561 29750561 0 0 Insertion 1 upstream_gene_variant HET FN3146-S Chr1 31933798 31933798 0 0 Insertion 1 upstream_gene_variant HET FN3146-S Chr1 38389887 G-A 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HOMO FN3146-S Chr1 38771375 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g66760 inactive receptor kinase At2g26730 precursor, putative, expressed FN3146-S Chr1 38771376 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3146-S Chr1 42413270 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3146-S Chr1 43027902 43027903 0 0 Deletion 1 frameshift_variant HET LOC_Os01g74260 retrotransposon protein, putative, unclassified, expressed FN3146-S Chr10 1040328 1040329 0 0 Deletion 1 upstream_gene_variant HET FN3146-S Chr10 15059864 15059864 0 0 Insertion 2 upstream_gene_variant HET FN3146-S Chr10 20234052 20234070 0 0 Deletion 18 upstream_gene_variant HET FN3146-S Chr10 21441833 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN3146-S Chr10 2174975 2174979 0 0 Deletion 4 downstream_gene_variant HET FN3146-S Chr10 3168477 3168478 0 0 Deletion 1 upstream_gene_variant HET FN3146-S Chr10 5102176 5102177 0 0 Deletion 1 intron_variant HET FN3146-S Chr10 5559531 Chr7 10762025 0 Translocation 0 FN3146-S Chr10 7129462 7129462 0 0 Insertion 1 upstream_gene_variant HET FN3146-S Chr10 7703766 7703768 0 0 Deletion 2 upstream_gene_variant HET FN3146-S Chr10 7745591 7745592 0 0 Deletion 1 downstream_gene_variant HET FN3146-S Chr11 19390524 Chr2 23245299 0 Translocation 0 FN3146-S Chr11 23663207 23663207 0 0 Insertion 1 downstream_gene_variant HET FN3146-S Chr11 26252007 Chr7 13389362 0 Translocation 0 FN3146-S Chr11 27716852 Chr10 528945 0 Translocation 0 FN3146-S Chr11 28368125 Chr8 2141387 0 Translocation 0 LOC_Os11g47150 OsWAK122 - OsWAK receptor-like protein kinase, expressed FN3146-S Chr11 4621986 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g08660 TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed FN3146-S Chr11 5389960 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3146-S Chr11 5513624 Chr7 25234185 0 Translocation 0 FN3146-S Chr11 6942814 Chr6 2813614 0 Translocation 0 FN3146-S Chr11 7525201 7525239 0 0 Deletion 38 intron_variant HET FN3146-S Chr12 10274729 Chr2 28453106 0 Translocation 0 FN3146-S Chr12 10661954 Chr8 6838425 0 Translocation 0 FN3146-S Chr12 10699968 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3146-S Chr12 13964221 13964221 0 0 Insertion 1 upstream_gene_variant HET FN3146-S Chr12 14049546 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3146-S Chr12 14813678 14813705 0 0 Deletion 27 upstream_gene_variant HET FN3146-S Chr12 15530007 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3146-S Chr12 16403888 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3146-S Chr12 16443905 Chr7 11773467 0 Translocation 0 FN3146-S Chr12 16452519 Chr9 11596738 0 Translocation 0 FN3146-S Chr12 16841767 16841770 0 0 Deletion 3 upstream_gene_variant HET FN3146-S Chr12 16890436 16890438 0 0 Deletion 2 downstream_gene_variant HET FN3146-S Chr12 17096932 17096932 0 0 Insertion 1 frameshift_variant HET LOC_Os12g28920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3146-S Chr12 2146851 2146851 0 0 Insertion 1 upstream_gene_variant HET FN3146-S Chr12 25131894 25131894 0 0 Insertion 1 upstream_gene_variant HET FN3146-S Chr12 27144999 Chr2 30406213 0 Translocation 0 FN3146-S Chr12 4409273 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3146-S Chr12 8230194 Chr1 26332708 0 Translocation 0 FN3146-S Chr2 19180318 Chr1 33391489 0 Translocation 0 LOC_Os02g32440 expressed protein FN3146-S Chr2 22487980 22488022 0 0 Deletion 42 upstream_gene_variant HET FN3146-S Chr2 25918777 25918777 0 0 Insertion 1 upstream_gene_variant HET FN3146-S Chr2 28634162 28634162 0 0 Insertion 4 INTERGENIC HET FN3146-S Chr2 3945717 3945717 0 0 Insertion 2 INTERGENIC HET FN3146-S Chr2 5097571 5097573 0 0 Deletion 2 intron_variant HET FN3146-S Chr2 9331731 9331732 0 0 Deletion 1 upstream_gene_variant HET FN3146-S Chr3 13471849 13471851 0 0 Deletion 2 downstream_gene_variant HET FN3146-S Chr3 15054868 15054868 0 0 Insertion 1 intron_variant HET FN3146-S Chr3 16642652 16642654 0 0 Deletion 2 upstream_gene_variant HET FN3146-S Chr3 17627872 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3146-S Chr3 18305786 18305786 0 0 Insertion 1 upstream_gene_variant HET FN3146-S Chr3 20553510 G-A 0 0 Single Base Substitution 0 INTRON HET FN3146-S Chr3 20553511 G-A 0 0 Single Base Substitution 0 INTRON HET FN3146-S Chr3 26762712 26762713 0 0 Deletion 1 intron_variant HET FN3146-S Chr3 30924138 30924139 0 0 Deletion 1 downstream_gene_variant HET FN3146-S Chr3 587433 587434 0 0 Deletion 1 downstream_gene_variant HET FN3146-S Chr3 8268304 8268305 0 0 Deletion 1 upstream_gene_variant HET FN3146-S Chr4 10014698 10014724 0 0 Deletion 26 downstream_gene_variant HET FN3146-S Chr4 12266110 12266110 0 0 Insertion 1 downstream_gene_variant HET FN3146-S Chr4 16662239 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3146-S Chr4 20056133 20056134 0 0 Deletion 1 upstream_gene_variant HET FN3146-S Chr4 25990439 25990439 0 0 Insertion 2 upstream_gene_variant HET FN3146-S Chr4 28330252 28330253 0 0 Deletion 1 upstream_gene_variant HET FN3146-S Chr4 28856401 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3146-S Chr4 4162628 Chr1 20756020 0 Translocation 0 LOC_Os01g37160 retrotransposon protein, putative, unclassified FN3146-S Chr4 5348461 5348465 0 0 Deletion 4 upstream_gene_variant HET FN3146-S Chr4 7003448 T-C 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN3146-S Chr5 10472043 10472073 0 0 Deletion 30 disruptive_inframe_deletion HET LOC_Os05g18200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3146-S Chr5 10732324 10732324 0 0 Insertion 1 intron_variant HET FN3146-S Chr5 15920240 15920240 0 0 Insertion 1 upstream_gene_variant HET FN3146-S Chr5 15980109 15980109 0 0 Insertion 1 frameshift_variant HET LOC_Os05g27480 retrotransposon protein, putative, Ty3-gypsy subclass FN3146-S Chr5 2282713 2282714 0 0 Deletion 1 downstream_gene_variant HET FN3146-S Chr5 22850177 22850178 0 0 Deletion 1 downstream_gene_variant HET FN3146-S Chr5 25137321 25137336 0 0 Deletion 15 disruptive_inframe_deletion HET LOC_Os05g43220 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3146-S Chr5 26009614 26009614 0 0 Insertion 1 upstream_gene_variant HET FN3146-S Chr5 29179565 29179565 0 0 Insertion 1 upstream_gene_variant HET FN3146-S Chr5 4011866 4011867 0 0 Deletion 1 downstream_gene_variant HET FN3146-S Chr5 8493807 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3146-S Chr5 9509534 9509534 0 0 Insertion 1 intron_variant HET FN3146-S Chr5 9998349 9998349 0 0 Insertion 2 downstream_gene_variant HET FN3146-S Chr6 11046324 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3146-S Chr6 12550132 12550150 0 0 Deletion 18 upstream_gene_variant HET FN3146-S Chr6 17718346 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3146-S Chr6 18868762 18868762 0 0 Insertion 1 upstream_gene_variant HET FN3146-S Chr6 25765958 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3146-S Chr6 28266870 Chr1 17070688 0 Translocation 0 LOC_Os01g31220 expressed protein FN3146-S Chr6 28266870 Chr1 17070688 0 Translocation 0 LOC_Os06g46550 expressed protein FN3146-S Chr6 30706646 30706647 0 0 Deletion 1 upstream_gene_variant HET FN3146-S Chr6 4040818 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3146-S Chr6 5754105 Chr2 28969990 0 Translocation 0 FN3146-S Chr6 79181 79182 0 0 Deletion 1 intergenic_region HET FN3146-S Chr6 8582650 8582650 0 0 Insertion 1 upstream_gene_variant HET FN3146-S Chr6 8970001 8994000 0 0 Deletion 23999 LOC_Os06g15810 integral membrane protein, putative, expressed FN3146-S Chr6 8970001 8994000 0 0 Deletion 23999 LOC_Os06g15820 NHL repeat-containing protein, putative, expressed FN3146-S Chr6 8970001 8994000 0 0 Deletion 23999 LOC_Os06g15830 expressed protein FN3146-S Chr6 8970001 8994000 0 0 Deletion 23999 LOC_Os06g15840 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3146-S Chr6 9002001 9064000 0 0 Deletion 61999 LOC_Os06g15860 retrotransposon protein, putative, unclassified, expressed FN3146-S Chr6 9002001 9064000 0 0 Deletion 61999 LOC_Os06g15870 retrotransposon protein, putative, unclassified, expressed FN3146-S Chr6 9002001 9064000 0 0 Deletion 61999 LOC_Os06g15880 retrotransposon protein, putative, unclassified FN3146-S Chr6 9002001 9064000 0 0 Deletion 61999 LOC_Os06g15890 expressed protein FN3146-S Chr6 9002001 9064000 0 0 Deletion 61999 LOC_Os06g15900 conserved hypothetical protein FN3146-S Chr6 9002001 9064000 0 0 Deletion 61999 LOC_Os06g15910 potassium transporter, putative, expressed FN3146-S Chr6 9002001 9064000 0 0 Deletion 61999 LOC_Os06g15920 transposon protein, putative, unclassified, expressed FN3146-S Chr6 9002001 9064000 0 0 Deletion 61999 LOC_Os06g15930 retrotransposon protein, putative, unclassified, expressed FN3146-S Chr6 9002001 9064000 0 0 Deletion 61999 LOC_Os06g15970 transposon protein, putative, unclassified, expressed FN3146-S Chr6 9076001 9224000 0 0 Deletion 147999 LOC_Os06g15980 ligA, putative, expressed FN3146-S Chr6 9076001 9224000 0 0 Deletion 147999 LOC_Os06g15990 aldehyde dehydrogenase, putative, expressed FN3146-S Chr6 9076001 9224000 0 0 Deletion 147999 LOC_Os06g15995 expressed protein FN3146-S Chr6 9076001 9224000 0 0 Deletion 147999 LOC_Os06g16000 UDP-glucoronosyl and UDP-glucosyl transferase, putative, expressed FN3146-S Chr6 9076001 9224000 0 0 Deletion 147999 LOC_Os06g16010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3146-S Chr6 9076001 9224000 0 0 Deletion 147999 LOC_Os06g16020 expressed protein FN3146-S Chr6 9076001 9224000 0 0 Deletion 147999 LOC_Os06g16030 amidase family protein, putative, expressed FN3146-S Chr6 9076001 9224000 0 0 Deletion 147999 LOC_Os06g16040 expressed protein FN3146-S Chr6 9076001 9224000 0 0 Deletion 147999 LOC_Os06g16050 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3146-S Chr6 9076001 9224000 0 0 Deletion 147999 LOC_Os06g16060 zinc finger, C3HC4 type domain containing protein, expressed FN3146-S Chr6 9076001 9224000 0 0 Deletion 147999 LOC_Os06g16070 receptor-like protein kinase 2 precursor, putative, expressed FN3146-S Chr6 9076001 9224000 0 0 Deletion 147999 LOC_Os06g16080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3146-S Chr6 9076001 9224000 0 0 Deletion 147999 LOC_Os06g16090 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3146-S Chr6 9076001 9224000 0 0 Deletion 147999 LOC_Os06g16100 retrotransposon, putative, centromere-specific, expressed FN3146-S Chr6 9076001 9224000 0 0 Deletion 147999 LOC_Os06g16110 expressed protein FN3146-S Chr6 9076001 9224000 0 0 Deletion 147999 LOC_Os06g16120 expressed protein FN3146-S Chr6 9076001 9224000 0 0 Deletion 147999 LOC_Os06g16130 transposon protein, putative, unclassified, expressed FN3146-S Chr6 9076001 9224000 0 0 Deletion 147999 LOC_Os06g16140 expressed protein FN3146-S Chr6 9076001 9224000 0 0 Deletion 147999 LOC_Os06g16150 expressed protein FN3146-S Chr6 9076001 9224000 0 0 Deletion 147999 LOC_Os06g16160 expressed protein FN3146-S Chr6 9076001 9224000 0 0 Deletion 147999 LOC_Os06g16170 expressed protein FN3146-S Chr6 9076001 9224000 0 0 Deletion 147999 LOC_Os06g16180 retrotransposon protein, putative, unclassified FN3146-S Chr6 9076001 9224000 0 0 Deletion 147999 LOC_Os06g16190 expressed protein FN3146-S Chr6 9076001 9224000 0 0 Deletion 147999 LOC_Os06g16200 proteins of unknown function domain containing protein, expressed FN3146-S Chr6 9286134 Chr4 6080062 0 Translocation 0 LOC_Os04g11180 retrotransposon protein, putative, unclassified, expressed FN3146-S Chr7 14413575 14413578 0 0 Deletion 3 upstream_gene_variant HET FN3146-S Chr7 16050263 Chr6 16985200 0 Translocation 0 FN3146-S Chr7 16704958 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3146-S Chr7 18841793 A-G 0 0 Single Base Substitution 0 INTRON HET FN3146-S Chr7 22905918 22905944 0 0 Deletion 26 upstream_gene_variant HET FN3146-S Chr7 23941077 23941078 0 0 Deletion 1 upstream_gene_variant HET FN3146-S Chr7 26539945 Chr3 18111952 0 Translocation 0 FN3146-S Chr7 2834866 2834866 0 0 Insertion 1 downstream_gene_variant HET FN3146-S Chr7 29088086 29088087 0 0 Deletion 1 upstream_gene_variant HET FN3146-S Chr7 7016089 7016133 0 0 Deletion 44 frameshift_variant HET LOC_Os07g12360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3146-S Chr7 8430062 Chr2 20809530 0 Translocation 0 LOC_Os07g14760 expressed protein FN3146-S Chr7 8587516 8587516 0 0 Insertion 1 upstream_gene_variant HET FN3146-S Chr7 8862383 Chr3 31102197 0 Translocation 0 LOC_Os07g15360 retrotransposon protein, putative, Ty1-copia subclass FN3146-S Chr7 8953433 Chr4 11550325 0 Translocation 0 FN3146-S Chr7 9847424 9847425 0 0 Deletion 1 upstream_gene_variant HET FN3146-S Chr8 14570054 Chr3 19272405 0 Translocation 0 FN3146-S Chr8 15155874 15155934 0 0 Deletion 60 disruptive_inframe_deletion HET LOC_Os08g24990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3146-S Chr8 16384197 Chr7 15520368 0 Translocation 0 FN3146-S Chr8 17025543 17025544 0 0 Deletion 1 downstream_gene_variant HET FN3146-S Chr8 20336371 20336371 0 0 Insertion 1 downstream_gene_variant HET FN3146-S Chr8 5966937 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN3146-S Chr8 5966938 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN3146-S Chr8 6945174 6945175 0 0 Deletion 1 upstream_gene_variant HET FN3146-S Chr8 7014505 7014506 0 0 Deletion 1 frameshift_variant HET LOC_Os08g11960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3146-S Chr8 8545415 8545416 0 0 Deletion 1 downstream_gene_variant HET FN3146-S Chr9 106441 106442 0 0 Deletion 1 upstream_gene_variant HET FN3146-S Chr9 106498 106499 0 0 Deletion 1 upstream_gene_variant HET FN3146-S Chr9 15722973 Chr2 27810256 0 Translocation 0 FN3146-S Chr9 1651315 1651327 0 0 Deletion 12 intergenic_region HET FN3146-S Chr9 218385 218386 0 0 Deletion 1 upstream_gene_variant HET FN3146-S Chr9 228192 228192 0 0 Insertion 1 downstream_gene_variant HET FN3146-S Chr9 2623773 2623828 0 0 Deletion 55 downstream_gene_variant HET FN3146-S Chr9 4080964 4080964 0 0 Insertion 1 upstream_gene_variant HET FN3146-S Chr9 4752951 4752980 0 0 Deletion 29 upstream_gene_variant HET FN3146-S Chr9 517116 517132 0 0 Deletion 16 upstream_gene_variant HET FN3146-S Chr9 5425176 5425220 0 0 Deletion 44 downstream_gene_variant HET FN3146-S Chr9 6887630 6887636 0 0 Deletion 6 upstream_gene_variant HET FN3146-S Chr9 783128 783129 0 0 Deletion 1 upstream_gene_variant HET FN3146-S Chr9 83131 83132 0 0 Deletion 1 upstream_gene_variant HET FN3146-S Chr9 8410946 Chr7 28606426 0 Translocation 0 FN3146-S Chr9 9056858 9056859 0 0 Deletion 1 intron_variant HET FN3146-S Chr9 9932392 9932393 0 0 Deletion 1 upstream_gene_variant HET