FN3160-S Chr1 13500769 A-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3160-S Chr1 18977615 18977617 0 0 Deletion 2 UTR_5_PRIME HET FN3160-S Chr1 19671802 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3160-S Chr1 26582459 26582461 0 0 Deletion 2 INTERGENIC HET FN3160-S Chr1 29195752 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3160-S Chr1 7821787 7821789 0 0 Deletion 2 INTERGENIC HET FN3160-S Chr10 16708385 16708394 0 0 Deletion 9 UTR_5_PRIME HOMO FN3160-S Chr10 247487 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3160-S Chr10 4969564 Chr6 5102122 0 Translocation 0 FN3160-S Chr10 4969565 Chr7 18007963 0 Translocation 0 FN3160-S Chr10 5167946 5167946 0 0 Insertion 4 INTERGENIC HET FN3160-S Chr11 1332141 1332147 0 0 Deletion 6 INTRON HOMO FN3160-S Chr11 20269828 T-A 0 0 Single Base Substitution 0 INTRON HET FN3160-S Chr11 22248546 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3160-S Chr11 27925424 Chr10 15149102 0 Translocation 0 FN3160-S Chr11 7217400 7217408 0 0 Deletion 8 upstream_gene_variant HET FN3160-S Chr11 8984001 9000000 0 0 Deletion 15999 LOC_Os11g16370 uridine/cytidine kinase-like 1, putative, expressed FN3160-S Chr12 11773163 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3160-S Chr12 13170112 13170114 0 0 Deletion 2 INTERGENIC HET FN3160-S Chr12 14971531 14971532 0 0 Deletion 1 upstream_gene_variant HET FN3160-S Chr12 18322328 18322331 0 0 Deletion 3 INTERGENIC HOMO FN3160-S Chr12 19310802 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3160-S Chr12 21133387 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3160-S Chr12 26393472 26393473 0 0 Deletion 1 downstream_gene_variant HET FN3160-S Chr2 12882235 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3160-S Chr2 2526397 2526402 0 0 Deletion 5 upstream_gene_variant HET FN3160-S Chr2 25591930 T-C 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3160-S Chr2 25670334 C-G 0 0 Single Base Substitution 0 INTRON HET FN3160-S Chr2 33541610 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3160-S Chr2 5253649 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN3160-S Chr2 6760636 6760643 0 0 Deletion 7 INTERGENIC HOMO FN3160-S Chr2 8034957 8034958 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os02g14570 hydroquinone glucosyltransferase, putative, expressed FN3160-S Chr3 10728416 10728422 0 0 Deletion 6 INTERGENIC HET FN3160-S Chr3 12643994 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g22060 uroporphyrinogen decarboxylase, putative, expressed FN3160-S Chr3 21024279 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3160-S Chr3 21529027 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os03g38764 retrotransposon protein, putative, unclassified, expressed FN3160-S Chr3 24198597 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3160-S Chr3 26484048 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3160-S Chr3 26964001 26997000 0 0 Deletion 32999 LOC_Os03g47629 expressed protein FN3160-S Chr3 26964001 26997000 0 0 Deletion 32999 LOC_Os03g47640 expressed protein FN3160-S Chr3 26964001 26997000 0 0 Deletion 32999 LOC_Os03g47650 ankyrin, putative, expressed FN3160-S Chr3 26964001 26997000 0 0 Deletion 32999 LOC_Os03g48520 PB1 domain containing protein, expressed FN3160-S Chr3 28548899 28548899 0 0 Insertion 2 INTRON HET FN3160-S Chr3 3032084 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3160-S Chr3 4342927 4342927 0 0 Insertion 5 INTERGENIC HET FN3160-S Chr3 7860161 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3160-S Chr3 8942714 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3160-S Chr3 967144 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3160-S Chr4 18993863 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3160-S Chr4 23234997 23234998 0 0 Deletion 1 INTERGENIC HET FN3160-S Chr4 23590517 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3160-S Chr4 25939468 C-T 0 0 Single Base Substitution 0 INTRON HET FN3160-S Chr4 27007926 Chr2 28383914 0 Translocation 0 FN3160-S Chr5 14050171 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3160-S Chr5 16643172 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g28420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3160-S Chr5 23224399 23224400 0 0 Deletion 1 upstream_gene_variant HET FN3160-S Chr5 404964 404964 0 0 Insertion 2 INTERGENIC HET FN3160-S Chr5 6909701 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3160-S Chr6 14634524 14634565 0 0 Deletion 41 intergenic_region HET FN3160-S Chr6 23742599 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3160-S Chr6 24414618 24414620 0 0 Deletion 2 INTERGENIC HET FN3160-S Chr7 11306933 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3160-S Chr7 17607724 17869188 0 0 Inversion 261464 FN3160-S Chr7 17607758 18209414 0 0 Inversion 601656 FN3160-S Chr7 17673125 18025942 0 0 Inversion 352817 LOC_Os07g30000 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3160-S Chr7 17673125 18025942 0 0 Inversion 352817 LOC_Os07g30460 retrotransposon protein, putative, unclassified, expressed FN3160-S Chr7 288207 288208 0 0 Deletion 1 INTERGENIC HET FN3160-S Chr7 4184960 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3160-S Chr7 4184967 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3160-S Chr8 1019623 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3160-S Chr8 16691406 16691406 0 0 Insertion 1 downstream_gene_variant HET FN3160-S Chr8 2169998 2169998 0 0 Insertion 2 downstream_gene_variant HET FN3160-S Chr8 23803935 23803948 0 0 Deletion 13 UTR_3_PRIME HET FN3160-S Chr8 26027774 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3160-S Chr9 16805818 16805820 0 0 Deletion 2 INTERGENIC HET FN3160-S Chr9 22867317 22867318 0 0 Deletion 1 upstream_gene_variant HET FN3160-S Chr9 2674439 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g04970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3160-S Chr9 4091276 C-T 0 0 Single Base Substitution 0 INTRON HET FN3160-S Chr9 6144438 6144438 0 0 Insertion 1 upstream_gene_variant HET FN3160-S Chr9 8659848 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3160-S Chr9 9200364 C-A 0 0 Single Base Substitution 0 INTERGENIC HET