FN3164-S Chr1 10263001 10287000 0 0 Deletion 23999 LOC_Os01g18300 expressed protein FN3164-S Chr1 10263001 10287000 0 0 Deletion 23999 LOC_Os01g19460 retrotransposon protein, putative, unclassified, expressed FN3164-S Chr1 11100160 11100164 0 0 Deletion 4 downstream_gene_variant HET FN3164-S Chr1 13779648 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g24440 glycine-rich protein, putative, expressed FN3164-S Chr1 18337566 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3164-S Chr1 25255238 25255244 0 0 Deletion 6 INTERGENIC HOMO FN3164-S Chr1 27552136 27552139 0 0 Deletion 3 upstream_gene_variant HET FN3164-S Chr1 30210595 30210677 0 0 Deletion 82 intergenic_region HET FN3164-S Chr1 31060495 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3164-S Chr1 31772635 31772635 0 0 Insertion 1 intergenic_region HET FN3164-S Chr1 3441738 3441746 0 0 Deletion 8 INTERGENIC HOMO FN3164-S Chr1 41721380 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN3164-S Chr1 41721381 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN3164-S Chr1 41811128 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3164-S Chr1 8615204 8615205 0 0 Deletion 1 downstream_gene_variant HET FN3164-S Chr10 1352561 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3164-S Chr10 15524602 15524611 0 0 Deletion 9 CODON_CHANGE_PLUS_CODON_DELETION HOMO LOC_Os10g29880 expressed protein FN3164-S Chr10 19084243 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3164-S Chr11 13406399 T-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3164-S Chr11 14868648 14868649 0 0 Deletion 1 upstream_gene_variant HET FN3164-S Chr11 17364108 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN3164-S Chr11 17364109 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3164-S Chr11 17706471 17706499 0 0 Deletion 28 upstream_gene_variant HET FN3164-S Chr11 19878349 Chr3 1946824 0 Translocation 0 LOC_Os03g04230 transposon protein, putative, unclassified, expressed FN3164-S Chr11 23199386 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3164-S Chr11 23783077 23783079 0 0 Deletion 2 INTERGENIC HOMO FN3164-S Chr11 25113040 25113040 0 0 Insertion 10 upstream_gene_variant HET FN3164-S Chr11 25983201 25983201 0 0 Insertion 1 upstream_gene_variant HET FN3164-S Chr11 26537400 26537401 0 0 Deletion 1 intergenic_region HET FN3164-S Chr11 28877434 28877436 0 0 Deletion 2 downstream_gene_variant HET FN3164-S Chr11 8196313 Chr4 13912159 0 Translocation 0 FN3164-S Chr11 8480179 Chr6 19235413 0 Translocation 0 FN3164-S Chr11 9689970 G-T 0 0 Single Base Substitution 0 INTRON HET FN3164-S Chr12 11272885 Chr8 25751367 0 Translocation 0 FN3164-S Chr12 13512467 Chr2 18912678 0 Translocation 0 LOC_Os12g23780 expressed protein FN3164-S Chr12 13545230 Chr4 6233509 0 Translocation 0 LOC_Os04g11410 transposon protein, putative, CACTA, En/Spm sub-class FN3164-S Chr12 15658464 Chr8 15380701 0 Translocation 0 FN3164-S Chr12 18268721 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3164-S Chr12 20076114 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3164-S Chr12 21129441 21129443 0 0 Deletion 2 INTERGENIC HET FN3164-S Chr12 4980290 Chr2 3401992 0 Translocation 0 FN3164-S Chr12 6176575 6176576 0 0 Deletion 1 intron_variant HET FN3164-S Chr12 9525483 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3164-S Chr2 13703459 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3164-S Chr2 13713552 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3164-S Chr2 20526845 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g34300 transposon protein, putative, unclassified, expressed FN3164-S Chr2 23136471 23136472 0 0 Deletion 1 INTRON HET FN3164-S Chr2 29569074 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3164-S Chr2 30661181 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3164-S Chr2 32366555 32366556 0 0 Deletion 1 upstream_gene_variant HET FN3164-S Chr2 32933001 32944000 0 0 Deletion 10999 LOC_Os02g53930 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3164-S Chr2 33182031 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3164-S Chr2 6545319 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3164-S Chr2 9264158 9264158 0 0 Insertion 1 upstream_gene_variant HET FN3164-S Chr3 10396003 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3164-S Chr3 10613119 Chr1 23075437 0 Translocation 0 FN3164-S Chr3 10735738 10735739 0 0 Deletion 1 upstream_gene_variant HET FN3164-S Chr3 25981579 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3164-S Chr3 26131464 26131470 0 0 Deletion 6 disruptive_inframe_deletion HET LOC_Os03g46220 retrotransposon protein, putative, unclassified, expressed FN3164-S Chr3 30512905 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3164-S Chr3 30512907 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3164-S Chr3 32123966 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g56360 transposon protein, putative, unclassified, expressed FN3164-S Chr3 8290593 8290595 0 0 Deletion 2 upstream_gene_variant HET FN3164-S Chr3 8639609 Chr2 18421769 0 Translocation 0 FN3164-S Chr4 10480252 10480341 0 0 Deletion 89 frameshift_variant HET LOC_Os04g18840 retrotransposon protein, putative, unclassified, expressed FN3164-S Chr4 10720330 10720331 0 0 Deletion 1 frameshift_variant HET LOC_Os04g19270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3164-S Chr4 18552929 18552929 0 0 Insertion 1 upstream_gene_variant HET FN3164-S Chr4 19255663 19255744 0 0 Deletion 81 intergenic_region HET FN3164-S Chr4 20311928 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3164-S Chr4 26418614 26418615 0 0 Deletion 1 intron_variant HET FN3164-S Chr4 2821675 2821680 0 0 Deletion 5 frameshift_variant HET LOC_Os04g05570 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3164-S Chr4 30937043 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3164-S Chr4 34058907 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3164-S Chr4 3634200 Chr2 4744445 0 Translocation 0 FN3164-S Chr4 6206068 6206068 0 0 Insertion 1 upstream_gene_variant HET FN3164-S Chr4 6840520 6840592 0 0 Deletion 72 inframe_deletion HET LOC_Os04g12390 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3164-S Chr4 7149537 7149549 0 0 Deletion 12 INTERGENIC HOMO FN3164-S Chr4 8179003 8179003 0 0 Insertion 1 splice_region_variant&intron_variant HET FN3164-S Chr5 10614402 10614491 0 0 Deletion 89 downstream_gene_variant HET FN3164-S Chr5 10703618 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3164-S Chr5 11023918 11023918 0 0 Insertion 1 upstream_gene_variant HET FN3164-S Chr5 11557312 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g19850 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3164-S Chr5 14803613 14803616 0 0 Deletion 3 upstream_gene_variant HET FN3164-S Chr5 16853076 17132093 0 0 Inversion 279017 FN3164-S Chr5 16853076 17242206 0 0 Inversion 389130 LOC_Os05g29800 expressed protein FN3164-S Chr5 17132084 17287963 0 0 Inversion 155879 FN3164-S Chr5 17235001 17267000 0 0 Deletion 31999 LOC_Os05g29800 expressed protein FN3164-S Chr5 17235001 17267000 0 0 Deletion 31999 LOC_Os05g29810 AP2 domain containing protein, expressed FN3164-S Chr5 17235001 17267000 0 0 Deletion 31999 LOC_Os05g29820 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3164-S Chr5 17235001 17267000 0 0 Deletion 31999 LOC_Os05g30080 retrotransposon protein, putative, unclassified FN3164-S Chr5 18051069 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3164-S Chr5 19451109 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3164-S Chr5 20785899 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3164-S Chr5 23265857 23265859 0 0 Deletion 2 upstream_gene_variant HET FN3164-S Chr5 28410535 28410540 0 0 Deletion 5 intron_variant HET FN3164-S Chr5 29886601 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN3164-S Chr5 3467269 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3164-S Chr5 4151752 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3164-S Chr5 8296306 8296307 0 0 Deletion 1 upstream_gene_variant HET FN3164-S Chr5 8774612 Chr4 16101853 0 Translocation 0 LOC_Os04g27250 expressed protein FN3164-S Chr6 10303215 10303215 0 0 Insertion 1 upstream_gene_variant HET FN3164-S Chr6 21739120 21739124 0 0 Deletion 4 downstream_gene_variant HET FN3164-S Chr6 22016114 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3164-S Chr6 22880828 22880882 0 0 Deletion 54 intergenic_region HET FN3164-S Chr6 24355870 Chr2 22003094 0 Translocation 0 FN3164-S Chr6 26111661 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g43450 retrotransposon protein, putative, unclassified, expressed FN3164-S Chr6 3089866 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3164-S Chr6 4756172 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3164-S Chr7 12414826 12414826 0 0 Insertion 1 intergenic_region HET FN3164-S Chr7 1463122 1463123 0 0 Deletion 1 frameshift_variant HET LOC_Os07g03630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3164-S Chr7 15533982 15533983 0 0 Deletion 1 INTERGENIC HOMO FN3164-S Chr7 2609366 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3164-S Chr7 6076771 6076853 0 0 Deletion 82 downstream_gene_variant HET FN3164-S Chr8 22474645 22474679 0 0 Deletion 34 downstream_gene_variant HET FN3164-S Chr8 22509008 22509009 0 0 Deletion 1 intron_variant HET FN3164-S Chr8 25298963 25298964 0 0 Deletion 1 upstream_gene_variant HET FN3164-S Chr8 28403329 Chr7 4246458 0 Translocation 0 FN3164-S Chr8 5664274 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g09800 WRKY105, expressed FN3164-S Chr8 6054409 6054410 0 0 Deletion 1 INTERGENIC HOMO FN3164-S Chr8 6367663 Chr7 9689858 0 Translocation 0 FN3164-S Chr8 9574971 9574972 0 0 Deletion 1 intergenic_region HET FN3164-S Chr9 15655367 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3164-S Chr9 15655368 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3164-S Chr9 18632402 18632403 0 0 Deletion 1 upstream_gene_variant HET FN3164-S Chr9 3286018 3286018 0 0 Insertion 1 upstream_gene_variant HET