FN3165-S Chr1 14628700 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3165-S Chr1 20810863 20810863 0 0 Insertion 1 downstream_gene_variant HET FN3165-S Chr1 32519950 A-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3165-S Chr1 35896812 35896813 0 0 Deletion 1 INTERGENIC HET FN3165-S Chr1 42907856 42907856 0 0 Insertion 4 upstream_gene_variant HET FN3165-S Chr1 4767001 4777000 0 0 Deletion 9999 LOC_Os01g09384 ankyrin repeat domain containing protein, putative, expressed FN3165-S Chr1 4781001 4842000 0 0 Deletion 60999 LOC_Os01g09400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3165-S Chr1 4781001 4842000 0 0 Deletion 60999 LOC_Os01g09410 expressed protein FN3165-S Chr1 4781001 4842000 0 0 Deletion 60999 LOC_Os01g09420 expressed protein FN3165-S Chr1 4781001 4842000 0 0 Deletion 60999 LOC_Os01g09430 expressed protein FN3165-S Chr1 4781001 4842000 0 0 Deletion 60999 LOC_Os01g09440 expressed protein FN3165-S Chr1 4781001 4842000 0 0 Deletion 60999 LOC_Os01g09450 OsIAA2 - Auxin-responsive Aux/IAA gene family member, expressed FN3165-S Chr1 4781001 4842000 0 0 Deletion 60999 LOC_Os01g09460 hexokinase, putative, expressed FN3165-S Chr1 4781001 4842000 0 0 Deletion 60999 LOC_Os01g09470 IQ calmodulin-binding motif family protein, expressed FN3165-S Chr1 4781001 4842000 0 0 Deletion 60999 LOC_Os01g09480 hypothetical protein FN3165-S Chr1 4781001 4842000 0 0 Deletion 60999 LOC_Os01g09490 transposon protein, putative, unclassified, expressed FN3165-S Chr1 4781001 4842000 0 0 Deletion 60999 LOC_Os01g09970 expressed protein FN3165-S Chr10 16055731 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3165-S Chr10 16795333 C-T 0 0 Single Base Substitution 0 INTRON HET FN3165-S Chr10 16795337 G-T 0 0 Single Base Substitution 0 INTRON HET FN3165-S Chr10 20184321 20184371 0 0 Deletion 50 downstream_gene_variant HET FN3165-S Chr10 20502589 20502590 0 0 Deletion 1 upstream_gene_variant HET FN3165-S Chr10 20516655 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3165-S Chr10 20516656 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g38402 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3165-S Chr10 9404388 9404411 0 0 Deletion 23 INTRON HET FN3165-S Chr11 10162797 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3165-S Chr11 12157466 12157467 0 0 Deletion 1 intergenic_region HET FN3165-S Chr11 12829976 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3165-S Chr11 13485820 Chr2 18272186 0 Translocation 0 FN3165-S Chr11 22193654 Chr4 5327082 0 Translocation 0 FN3165-S Chr11 23694688 Chr1 25246388 0 Translocation 0 FN3165-S Chr11 3402958 3402959 0 0 Deletion 1 frameshift_variant HET LOC_Os11g06920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3165-S Chr11 7158246 Chr10 6978185 0 Translocation 0 FN3165-S Chr12 11937854 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3165-S Chr12 13076843 13076843 0 0 Insertion 1 upstream_gene_variant HET FN3165-S Chr12 15953891 Chr9 1340903 0 Translocation 0 FN3165-S Chr12 18002467 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3165-S Chr12 22272617 C-T 0 0 Single Base Substitution 0 STOP_GAINED HOMO LOC_Os12g36380 retrotransposon protein, putative, unclassified FN3165-S Chr12 25976035 25976035 0 0 Insertion 2 UTR_5_PRIME HET FN3165-S Chr12 4311369 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3165-S Chr12 7453314 7453318 0 0 Deletion 4 intron_variant HET FN3165-S Chr12 7473375 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3165-S Chr2 11931805 11931806 0 0 Deletion 1 upstream_gene_variant HET FN3165-S Chr2 14378463 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN3165-S Chr2 16911492 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN3165-S Chr2 19989165 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3165-S Chr2 28083502 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3165-S Chr2 28822167 A-C 0 0 Single Base Substitution 0 INTRON HET FN3165-S Chr2 30406424 30406426 0 0 Deletion 2 upstream_gene_variant HET FN3165-S Chr3 14149567 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3165-S Chr3 28200199 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3165-S Chr3 29652658 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3165-S Chr3 4463815 Chr2 2674139 0 Translocation 0 LOC_Os02g05530 expressed protein FN3165-S Chr4 11666862 11666866 0 0 Deletion 4 intron_variant HET FN3165-S Chr4 1605980 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3165-S Chr4 16579755 Chr2 21668128 0 Translocation 0 FN3165-S Chr4 2095308 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g04400 FAR1 family protein, expressed FN3165-S Chr4 28811609 28811614 0 0 Deletion 5 INTERGENIC HOMO FN3165-S Chr4 32893831 32893832 0 0 Deletion 1 upstream_gene_variant HET FN3165-S Chr4 33889385 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g56850 auxin response factor, putative, expressed FN3165-S Chr4 8916912 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3165-S Chr5 13812545 13812580 0 0 Deletion 35 upstream_gene_variant HET FN3165-S Chr5 16890867 T-A 0 0 Single Base Substitution 0 INTRON HET FN3165-S Chr5 25552582 25552582 0 0 Insertion 1 upstream_gene_variant HET FN3165-S Chr5 25867602 25867602 0 0 Insertion 1 downstream_gene_variant HET FN3165-S Chr5 6519464 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3165-S Chr5 769349 769358 0 0 Deletion 9 INTERGENIC HOMO FN3165-S Chr5 7855875 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3165-S Chr6 12203578 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3165-S Chr6 12318935 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os06g21330 ABB1 - Ankyrin repeat region with 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains, expressed FN3165-S Chr6 16844212 16844219 0 0 Deletion 7 INTERGENIC HET FN3165-S Chr6 19580338 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3165-S Chr6 20738754 20738756 0 0 Deletion 2 intron_variant HET FN3165-S Chr6 24982279 24982286 0 0 Deletion 7 UTR_5_PRIME HOMO FN3165-S Chr6 25662382 25662391 0 0 Deletion 9 INTERGENIC HET FN3165-S Chr6 25988358 25988359 0 0 Deletion 1 upstream_gene_variant HET FN3165-S Chr6 28569001 28586000 0 0 Deletion 16999 LOC_Os06g50960 expansin precursor, putative, expressed FN3165-S Chr6 34037 Chr3 16882320 0 Translocation 0 FN3165-S Chr6 7345165 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3165-S Chr6 7782338 G-A 0 0 Single Base Substitution 0 INTRON HET FN3165-S Chr7 12087805 12087805 0 0 Insertion 1 intron_variant HET FN3165-S Chr7 13903213 13903215 0 0 Deletion 2 downstream_gene_variant HET FN3165-S Chr7 1436141 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3165-S Chr7 17965031 17965031 0 0 Insertion 1 downstream_gene_variant HET FN3165-S Chr7 18984209 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3165-S Chr7 21189500 21189502 0 0 Deletion 2 upstream_gene_variant HET FN3165-S Chr7 22010603 Chr3 8428627 0 Translocation 0 FN3165-S Chr7 24644201 24644202 0 0 Deletion 1 INTERGENIC HOMO FN3165-S Chr7 24854156 24854156 0 0 Insertion 2 upstream_gene_variant HET FN3165-S Chr7 26701797 G-C 0 0 Single Base Substitution 0 INTRON HET FN3165-S Chr7 27739298 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3165-S Chr7 8165671 8165672 0 0 Deletion 1 INTERGENIC HOMO FN3165-S Chr8 10343873 Chr1 11602709 0 Translocation 0 FN3165-S Chr8 10388279 Chr1 11602708 0 Translocation 0 FN3165-S Chr8 14868290 14868290 0 0 Insertion 1 upstream_gene_variant HET FN3165-S Chr8 22128427 22128431 0 0 Deletion 4 upstream_gene_variant HET FN3165-S Chr8 26803958 26803970 0 0 Deletion 12 INTERGENIC HOMO FN3165-S Chr8 28307514 28307515 0 0 Deletion 1 INTERGENIC HOMO FN3165-S Chr8 6483063 6483063 0 0 Insertion 1 upstream_gene_variant HET FN3165-S Chr8 8387525 8387526 0 0 Deletion 1 upstream_gene_variant HET FN3165-S Chr9 11216690 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3165-S Chr9 15848817 15848858 0 0 Deletion 41 upstream_gene_variant HET FN3165-S Chr9 225378 225378 0 0 Insertion 1 downstream_gene_variant HET FN3165-S Chr9 5118424 Chr1 26919364 0 Translocation 0 FN3165-S Chr9 5118428 Chr1 26927575 0 Translocation 0 FN3165-S Chr9 6569800 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3165-S Chr9 6622486 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3165-S Chr9 7356049 7356916 0 0 Deletion 867 upstream_gene_variant HET FN3165-S Chr9 9909398 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g16230 hypothetical protein