FN3171-S Chr1 14535519 14535519 0 0 Insertion 1 upstream_gene_variant HET FN3171-S Chr1 21190438 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g37860 retrotransposon protein, putative, unclassified, expressed FN3171-S Chr1 28906157 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3171-S Chr1 32570228 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3171-S Chr1 4961944 4961952 0 0 Deletion 8 INTERGENIC HOMO FN3171-S Chr1 8146677 A-T 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN3171-S Chr1 8857408 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3171-S Chr10 15137651 15336193 0 0 Inversion 198542 FN3171-S Chr10 15137662 Chr3 2642998 0 Translocation 0 LOC_Os03g05380 expressed protein FN3171-S Chr10 15315791 15336189 0 0 Inversion 20398 LOC_Os10g29490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3171-S Chr10 15809001 15846000 0 0 Deletion 36999 LOC_Os10g30420 transcription factor Dp, putative, expressed FN3171-S Chr10 15809001 15846000 0 0 Deletion 36999 LOC_Os10g30430 heavy metal-associated domain containing protein, expressed FN3171-S Chr10 15809001 15846000 0 0 Deletion 36999 LOC_Os10g30440 expressed protein FN3171-S Chr10 15809001 15846000 0 0 Deletion 36999 LOC_Os10g30450 heavy-metal-associated domain-containing protein, putative, expressed FN3171-S Chr10 15809001 15846000 0 0 Deletion 36999 LOC_Os10g30460 retrotransposon protein, putative, unclassified, expressed FN3171-S Chr10 15809001 15846000 0 0 Deletion 36999 LOC_Os10g31510 glycine-rich cell wall structural protein 2 precursor, putative, expressed FN3171-S Chr10 15810800 Chr2 25422835 0 Translocation 0 LOC_Os10g30410 cytochrome P450 71D7, putative, expressed FN3171-S Chr10 15846308 Chr4 22418587 0 Translocation 0 FN3171-S Chr10 15865228 Chr4 22418575 0 Translocation 0 FN3171-S Chr10 18185378 Chr9 3032276 0 Translocation 0 LOC_Os09g06440 retrotransposon protein, putative, unclassified FN3171-S Chr10 22408168 22408169 0 0 Deletion 1 upstream_gene_variant HET FN3171-S Chr10 4528653 Chr5 5203626 0 Translocation 0 FN3171-S Chr10 4566881 4566894 0 0 Deletion 13 INTERGENIC HOMO FN3171-S Chr10 5039112 Chr5 15327794 0 Translocation 0 FN3171-S Chr11 10752594 G-A 0 0 Single Base Substitution 0 INTRON HET FN3171-S Chr11 12595172 12595173 0 0 Deletion 1 upstream_gene_variant HET FN3171-S Chr11 14181427 14181427 0 0 Insertion 1 downstream_gene_variant HET FN3171-S Chr11 17742647 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3171-S Chr11 2197842 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3171-S Chr11 24200200 24200206 0 0 Deletion 6 upstream_gene_variant HET FN3171-S Chr11 26705709 26705710 0 0 Deletion 1 downstream_gene_variant HET FN3171-S Chr11 27065427 27065430 0 0 Deletion 3 intron_variant HET FN3171-S Chr11 28436131 Chr4 22510409 0 Translocation 0 LOC_Os11g47290 receptor kinase, putative, expressed FN3171-S Chr11 5785518 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3171-S Chr11 9985118 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3171-S Chr12 11636664 11636664 0 0 Insertion 1 downstream_gene_variant HET FN3171-S Chr12 15684244 Chr9 7416630 0 Translocation 0 FN3171-S Chr12 15733344 15733348 0 0 Deletion 4 FRAME_SHIFT HET LOC_Os12g26850 retrotransposon protein, putative, unclassified, expressed FN3171-S Chr12 16910114 16910117 0 0 Deletion 3 CODON_CHANGE_PLUS_CODON_DELETION HOMO LOC_Os12g28590 ATPase 2, putative, expressed FN3171-S Chr12 18397016 Chr4 35416079 0 Translocation 0 FN3171-S Chr12 23779575 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3171-S Chr12 5021885 A-G 0 0 Single Base Substitution 0 INTRON HET FN3171-S Chr12 6691932 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os12g12190 expressed protein FN3171-S Chr12 6691933 A-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3171-S Chr2 13032346 13032347 0 0 Deletion 1 INTERGENIC HOMO FN3171-S Chr2 14730535 14730537 0 0 Deletion 2 downstream_gene_variant HET FN3171-S Chr2 1505729 1505743 0 0 Deletion 14 upstream_gene_variant HET FN3171-S Chr2 16439674 16439675 0 0 Deletion 1 upstream_gene_variant HET FN3171-S Chr2 18782842 18782879 0 0 Deletion 37 upstream_gene_variant HET FN3171-S Chr2 28492086 C-A 0 0 Single Base Substitution 0 INTRON HET FN3171-S Chr2 29427397 Chr1 37455144 0 Translocation 0 FN3171-S Chr2 8121376 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g14720 expressed protein FN3171-S Chr2 9093184 C-A 0 0 Single Base Substitution 0 INTRON HET FN3171-S Chr2 9264620 9264621 0 0 Deletion 1 upstream_gene_variant HET FN3171-S Chr3 18343558 18343558 0 0 Insertion 1 intron_variant HET FN3171-S Chr3 20246870 20246872 0 0 Deletion 2 INTERGENIC HET FN3171-S Chr3 20810676 20810677 0 0 Deletion 1 frameshift_variant HET LOC_Os03g37500 retrotransposon protein, putative, unclassified, expressed FN3171-S Chr3 2642983 3249893 0 0 Inversion 606910 LOC_Os03g05380 expressed protein FN3171-S Chr3 2647456 3250004 0 0 Inversion 602548 FN3171-S Chr3 32187619 32187637 0 0 Deletion 18 CODON_CHANGE_PLUS_CODON_DELETION HET LOC_Os03g56480 expressed protein FN3171-S Chr3 7900689 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3171-S Chr3 8536373 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3171-S Chr4 11919744 11919755 0 0 Deletion 11 INTERGENIC HOMO FN3171-S Chr4 12180464 12180465 0 0 Deletion 1 INTERGENIC HOMO FN3171-S Chr4 21212730 21212731 0 0 Deletion 1 upstream_gene_variant HET FN3171-S Chr4 3749247 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g07070 retrotransposon protein, putative, unclassified FN3171-S Chr4 9571247 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3171-S Chr4 9633809 9633824 0 0 Deletion 15 INTERGENIC HOMO FN3171-S Chr5 13871527 13871528 0 0 Deletion 1 downstream_gene_variant HET FN3171-S Chr5 13948039 13948098 0 0 Deletion 59 upstream_gene_variant HET FN3171-S Chr5 1844545 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3171-S Chr5 28885194 28885197 0 0 Deletion 3 upstream_gene_variant HET FN3171-S Chr5 6082375 6082376 0 0 Deletion 1 upstream_gene_variant HET FN3171-S Chr5 6098903 Chr4 5793780 0 Translocation 0 FN3171-S Chr5 7615570 7615571 0 0 Deletion 1 frameshift_variant HET LOC_Os05g13740 retrotransposon protein, putative, unclassified FN3171-S Chr6 13710812 G-A 0 0 Single Base Substitution 0 INTRON HET FN3171-S Chr6 16047945 16047967 0 0 Deletion 22 upstream_gene_variant HET FN3171-S Chr6 16517917 16517925 0 0 Deletion 8 FRAME_SHIFT HOMO LOC_Os06g28980 retrotransposon protein, putative, unclassified, expressed FN3171-S Chr6 16595957 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN3171-S Chr6 20565593 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3171-S Chr6 29639996 29640003 0 0 Deletion 7 INTERGENIC HOMO FN3171-S Chr6 31199284 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3171-S Chr6 5061877 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g09930 G protein coupled receptor, putative, expressed FN3171-S Chr6 5413710 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3171-S Chr6 6273653 6273654 0 0 Deletion 1 downstream_gene_variant HET FN3171-S Chr6 6390954 6390964 0 0 Deletion 10 INTERGENIC HOMO FN3171-S Chr6 7782063 Chr1 32154696 0 Translocation 0 FN3171-S Chr6 8679783 8679808 0 0 Deletion 25 downstream_gene_variant HET FN3171-S Chr7 16998626 Chr4 22551334 0 Translocation 0 LOC_Os04g37920 FAD binding domain of DNA photolyase domain containing protein, expressed FN3171-S Chr7 19135873 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g32190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3171-S Chr7 24044283 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3171-S Chr7 27303830 27303830 0 0 Insertion 1 upstream_gene_variant HET FN3171-S Chr7 4131080 Chr2 24389251 0 Translocation 0 FN3171-S Chr7 4253332 4253332 0 0 Insertion 1 UTR_3_PRIME HOMO FN3171-S Chr7 9407154 9407155 0 0 Deletion 1 UTR_3_PRIME HOMO FN3171-S Chr8 15958057 Chr2 610890 0 Translocation 0 LOC_Os02g02080 expressed protein FN3171-S Chr8 25987762 25987762 0 0 Insertion 1 upstream_gene_variant HET FN3171-S Chr8 28197584 Chr3 1961324 0 Translocation 0 FN3171-S Chr8 6079397 Chr7 19805110 0 Translocation 0 LOC_Os07g33170 retrotransposon protein, putative, unclassified, expressed FN3171-S Chr8 6079397 Chr7 19805110 0 Translocation 0 LOC_Os08g10370 retrotransposon protein, putative, unclassified FN3171-S Chr8 8582395 8865174 0 0 Inversion 282779 LOC_Os08g14320 zinc finger, C3HC4 type domain containing protein, expressed FN3171-S Chr8 8582399 8624298 0 0 Inversion 41899 LOC_Os08g14320 zinc finger, C3HC4 type domain containing protein, expressed FN3171-S Chr8 8582399 8624298 0 0 Inversion 41899 LOC_Os08g14370 retrotransposon protein, putative, unclassified FN3171-S Chr8 9446152 A-C 0 0 Single Base Substitution 0 INTRON HOMO FN3171-S Chr8 9446153 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3171-S Chr9 10375433 10375474 0 0 Deletion 41 frameshift_variant HET LOC_Os09g16970 expressed protein FN3171-S Chr9 10898021 Chr1 13547187 0 Translocation 0 FN3171-S Chr9 19195374 19195374 0 0 Insertion 1 3_prime_UTR_variant HET FN3171-S Chr9 20274111 20274114 0 0 Deletion 3 CODON_CHANGE_PLUS_CODON_DELETION HET LOC_Os09g34340 expressed protein FN3171-S Chr9 4945340 Chr7 10938238 0 Translocation 0 FN3171-S Chr9 6312370 6312379 0 0 Deletion 9 upstream_gene_variant HET