FN3172-S Chr1 16644005 16644008 0 0 Deletion 3 upstream_gene_variant HET FN3172-S Chr1 17176615 17176628 0 0 Deletion 13 INTERGENIC HOMO FN3172-S Chr1 30128807 30128808 0 0 Deletion 1 UTR_3_PRIME HOMO FN3172-S Chr1 34636409 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g59890 pentatricopeptide, putative, expressed FN3172-S Chr1 35851934 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g61930 SAC3/GANP family protein, putative, expressed FN3172-S Chr10 10112130 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g20139 expressed protein FN3172-S Chr10 11400136 Chr2 17608408 0 Translocation 0 FN3172-S Chr10 13273511 Chr3 36164375 0 Translocation 0 FN3172-S Chr10 16541943 16541944 0 0 Deletion 1 upstream_gene_variant HET FN3172-S Chr10 3359896 Chr6 22814703 0 Translocation 0 LOC_Os10g06540 vesicle-associated membrane protein, putative, expressed FN3172-S Chr10 3359896 Chr6 22815411 0 Translocation 0 LOC_Os10g06540 vesicle-associated membrane protein, putative, expressed FN3172-S Chr10 6421361 6421363 0 0 Deletion 2 upstream_gene_variant HET FN3172-S Chr10 8253274 8253275 0 0 Deletion 1 upstream_gene_variant HET FN3172-S Chr10 8357868 8357868 0 0 Insertion 1 upstream_gene_variant HET FN3172-S Chr10 8646076 8646077 0 0 Deletion 1 upstream_gene_variant HET FN3172-S Chr11 11917951 T-G 0 0 Single Base Substitution 0 INTRON HOMO FN3172-S Chr11 14760152 14760154 0 0 Deletion 2 INTERGENIC HOMO FN3172-S Chr11 17757142 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g30530 retrotransposon protein, putative, unclassified, expressed FN3172-S Chr11 19493133 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3172-S Chr11 20080915 20080915 0 0 Insertion 2 INTERGENIC HET FN3172-S Chr11 23997289 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3172-S Chr11 2651684 2651684 0 0 Insertion 1 intergenic_region HET FN3172-S Chr11 27705540 Chr5 23588478 0 Translocation 0 LOC_Os05g40160 NB-ARC domain containing protein, expressed FN3172-S Chr11 27705540 Chr5 23588478 0 Translocation 0 LOC_Os11g45790 NB-ARC domain containing protein, expressed FN3172-S Chr11 6641828 6832561 0 0 Inversion 190733 FN3172-S Chr11 9697248 9697352 0 0 Deletion 104 frameshift_variant&splice_donor_variant&splice_region_variant&intron_variant HET LOC_Os11g17390 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3172-S Chr12 11141520 11141604 0 0 Deletion 84 3_prime_UTR_variant HET FN3172-S Chr12 12042521 12042523 0 0 Deletion 2 intergenic_region HET FN3172-S Chr12 14276140 Chr7 29018361 0 Translocation 0 FN3172-S Chr12 20336751 20336752 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os12g33690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3172-S Chr12 21281690 21281695 0 0 Deletion 5 upstream_gene_variant HET FN3172-S Chr12 5146485 5146499 0 0 Deletion 14 INTRON HOMO FN3172-S Chr12 983508 983510 0 0 Deletion 2 INTERGENIC HET FN3172-S Chr2 6834363 6834367 0 0 Deletion 4 UTR_5_PRIME HOMO FN3172-S Chr2 706438 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3172-S Chr3 18818890 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3172-S Chr3 31990768 31990768 0 0 Insertion 1 intron_variant HET FN3172-S Chr3 36049260 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3172-S Chr3 5878807 5878812 0 0 Deletion 5 INTRON HOMO FN3172-S Chr4 13378253 T-A 0 0 Single Base Substitution 0 INTRON HET FN3172-S Chr4 16528155 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3172-S Chr4 16528156 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3172-S Chr4 20314643 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3172-S Chr4 24413752 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3172-S Chr4 25271417 Chr2 27312666 0 Translocation 0 FN3172-S Chr4 27330602 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3172-S Chr4 27343770 27343777 0 0 Deletion 7 INTERGENIC HET FN3172-S Chr4 3005547 3005547 0 0 Insertion 1 upstream_gene_variant HET FN3172-S Chr4 3005728 3005728 0 0 Insertion 1 upstream_gene_variant HET FN3172-S Chr4 31571148 31571149 0 0 Deletion 1 upstream_gene_variant HET FN3172-S Chr4 3170060 3170083 0 0 Deletion 23 downstream_gene_variant HET FN3172-S Chr4 3248300 3248300 0 0 Insertion 2 INTERGENIC HET FN3172-S Chr4 3251001 3331000 0 0 Deletion 79999 LOC_Os04g06270 hypothetical protein FN3172-S Chr4 3251001 3331000 0 0 Deletion 79999 LOC_Os04g06280 expressed protein FN3172-S Chr4 3251001 3331000 0 0 Deletion 79999 LOC_Os04g06290 retrotransposon protein, putative, unclassified, expressed FN3172-S Chr4 3251001 3331000 0 0 Deletion 79999 LOC_Os04g06300 expressed protein FN3172-S Chr4 3251001 3331000 0 0 Deletion 79999 LOC_Os04g06310 retrotransposon protein, putative, unclassified, expressed FN3172-S Chr4 3251001 3331000 0 0 Deletion 79999 LOC_Os04g06320 retrotransposon, putative, centromere-specific, expressed FN3172-S Chr4 3251001 3331000 0 0 Deletion 79999 LOC_Os04g06330 retrotransposon, putative, centromere-specific FN3172-S Chr4 3251001 3331000 0 0 Deletion 79999 LOC_Os04g06340 MEGL11 - Maternally expressed gene MEG family protein precursor, expressed FN3172-S Chr4 3251001 3331000 0 0 Deletion 79999 LOC_Os04g06350 expressed protein FN3172-S Chr4 3251001 3331000 0 0 Deletion 79999 LOC_Os04g06360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3172-S Chr4 3251001 3331000 0 0 Deletion 79999 LOC_Os04g06550 retrotransposon, putative, centromere-specific, expressed FN3172-S Chr4 3256374 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3172-S Chr4 3350476 3350499 0 0 Deletion 23 upstream_gene_variant HET FN3172-S Chr4 3366271 3366271 0 0 Insertion 1 upstream_gene_variant HET FN3172-S Chr4 33953954 33953960 0 0 Deletion 6 INTRON HOMO FN3172-S Chr4 4247532 Chr3 25764638 0 Translocation 0 LOC_Os04g07980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3172-S Chr5 10319048 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3172-S Chr5 12482851 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3172-S Chr5 12797453 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3172-S Chr5 15277141 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3172-S Chr5 16447666 16447691 0 0 Deletion 25 intron_variant HET FN3172-S Chr5 19149008 19149009 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os05g32700 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3172-S Chr5 24952707 24952708 0 0 Deletion 1 downstream_gene_variant HET FN3172-S Chr5 27885983 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3172-S Chr5 887904 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3172-S Chr6 10428823 Chr4 742415 0 Translocation 0 FN3172-S Chr6 10442600 Chr3 22985988 0 Translocation 0 FN3172-S Chr6 11347405 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3172-S Chr6 17293178 17293194 0 0 Deletion 16 intergenic_region HET FN3172-S Chr6 21768071 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3172-S Chr6 22514562 Chr4 3026470 0 Translocation 0 LOC_Os04g05880 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3172-S Chr6 28117153 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3172-S Chr6 5344770 5344770 0 0 Insertion 2 INTERGENIC HET FN3172-S Chr6 6586703 6762451 0 0 Inversion 175748 FN3172-S Chr6 6586708 6762454 0 0 Inversion 175746 FN3172-S Chr6 8399582 Chr1 17298369 0 Translocation 0 FN3172-S Chr6 9420334 Chr5 18398179 0 Translocation 0 LOC_Os05g31610 Leucine Rich Repeat family protein, expressed FN3172-S Chr6 9420334 Chr5 18398179 0 Translocation 0 LOC_Os06g16450 Leucine Rich Repeat family protein, expressed FN3172-S Chr7 1218070 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3172-S Chr7 14248359 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3172-S Chr7 19070183 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3172-S Chr7 21625925 21625926 0 0 Deletion 1 upstream_gene_variant HET FN3172-S Chr7 23377254 23377254 0 0 Insertion 1 upstream_gene_variant HET FN3172-S Chr7 23752157 23752157 0 0 Insertion 8 INTERGENIC HET FN3172-S Chr7 457330 G-A 0 0 Single Base Substitution 0 INTRON HET FN3172-S Chr7 6425782 6425782 0 0 Insertion 1 downstream_gene_variant HET FN3172-S Chr7 7202184 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3172-S Chr7 7296632 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3172-S Chr8 11002016 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3172-S Chr8 11903632 Chr1 21598870 0 Translocation 0 FN3172-S Chr8 20336255 Chr4 3256367 0 Translocation 0 FN3172-S Chr8 2528942 2528943 0 0 Deletion 1 downstream_gene_variant HET FN3172-S Chr8 5933067 5933068 0 0 Deletion 1 upstream_gene_variant HET FN3172-S Chr8 7565191 Chr6 15609133 0 Translocation 0 FN3172-S Chr8 7976934 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3172-S Chr8 8172301 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3172-S Chr8 8869889 8869904 0 0 Deletion 15 upstream_gene_variant HET FN3172-S Chr9 113095 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g01100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3172-S Chr9 113096 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g01100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3172-S Chr9 13623692 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3172-S Chr9 21903222 21903224 0 0 Deletion 2 INTRON HET FN3172-S Chr9 676200 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3172-S Chr9 7930710 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN3172-S Chr9 9619287 9619295 0 0 Deletion 8 INTERGENIC HOMO