FN3174-S Chr1 17965141 17965414 0 0 Inversion 273 LOC_Os01g32750 TATA binding protein-associated factor, putative, expressed FN3174-S Chr1 18410398 18410398 0 0 Insertion 1 upstream_gene_variant HET FN3174-S Chr1 19119092 C-T 0 0 Single Base Substitution 0 INTRON HET FN3174-S Chr1 21235000 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3174-S Chr1 22388032 22388032 0 0 Insertion 18 upstream_gene_variant FN3174-S Chr1 24854656 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3174-S Chr10 11178806 11178816 0 0 Deletion 10 INTRON HET FN3174-S Chr10 13481766 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3174-S Chr10 22180982 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3174-S Chr10 2726479 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3174-S Chr10 2907559 G-A 0 0 Single Base Substitution 0 INTRON HET FN3174-S Chr10 5931523 5931526 0 0 Deletion 3 INTERGENIC HET FN3174-S Chr10 745064 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3174-S Chr10 8312645 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3174-S Chr10 8721937 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3174-S Chr11 19184207 G-C 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3174-S Chr11 21680991 21680991 0 0 Insertion 38 intron_variant HET FN3174-S Chr11 6428680 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3174-S Chr11 7525201 7525239 0 0 Deletion 38 intron_variant HET FN3174-S Chr11 8565160 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3174-S Chr12 11613192 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g19930 retrotransposon protein, putative, Ty3-gypsy subclass FN3174-S Chr12 16012200 16012244 0 0 Deletion 44 intron_variant HET FN3174-S Chr12 20209674 20209685 0 0 Deletion 11 INTERGENIC HET FN3174-S Chr12 20878415 20878428 0 0 Deletion 13 INTERGENIC HET FN3174-S Chr12 20940032 20940033 0 0 Deletion 1 INTERGENIC HET FN3174-S Chr12 26413455 26413458 0 0 Deletion 3 INTERGENIC HET FN3174-S Chr12 3207102 3207103 0 0 Deletion 1 INTRON HET FN3174-S Chr12 5690982 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3174-S Chr2 13871695 13871696 0 0 Deletion 1 INTERGENIC HET FN3174-S Chr2 14558900 T-C 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3174-S Chr2 23498106 23498114 0 0 Deletion 8 INTERGENIC HOMO FN3174-S Chr2 28521984 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3174-S Chr2 3054001 3062000 0 0 Deletion 7999 LOC_Os02g06130 phytosulfokine receptor precursor, putative, expressed FN3174-S Chr2 3054001 3062000 0 0 Deletion 7999 LOC_Os02g11850 expressed protein FN3174-S Chr2 34738868 34738868 0 0 Insertion 12 upstream_gene_variant HET FN3174-S Chr2 35343442 35343447 0 0 Deletion 5 INTRON HET FN3174-S Chr2 9139118 9139124 0 0 Deletion 6 CODON_CHANGE_PLUS_CODON_DELETION HET LOC_Os02g16060 RGA-1, putative, expressed FN3174-S Chr3 13144606 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3174-S Chr3 2407838 2407844 0 0 Deletion 6 INTERGENIC HOMO FN3174-S Chr3 31794543 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3174-S Chr3 35583898 35583905 0 0 Deletion 7 INTRON HOMO FN3174-S Chr4 17564056 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3174-S Chr4 17957444 17957445 0 0 Deletion 1 upstream_gene_variant HET FN3174-S Chr5 17599197 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN3174-S Chr5 17599198 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN3174-S Chr5 24707040 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3174-S Chr5 7213239 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g12570 NB-ARC domain containing protein, expressed FN3174-S Chr6 1338433 1338433 0 0 Insertion 22 upstream_gene_variant HET FN3174-S Chr6 19578803 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3174-S Chr6 3015851 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3174-S Chr6 3345256 3345262 0 0 Deletion 6 INTRON HET FN3174-S Chr6 7946936 T-A 0 0 Single Base Substitution 0 INTRON HET FN3174-S Chr7 12633419 12633420 0 0 Deletion 1 INTRON HOMO FN3174-S Chr7 23450743 Chr1 35181308 0 Translocation 0 FN3174-S Chr7 23450749 Chr1 35182412 0 Translocation 0 FN3174-S Chr7 24282882 24282882 0 0 Insertion 2 INTERGENIC HET FN3174-S Chr7 24421928 24421941 0 0 Deletion 13 INTRON HET FN3174-S Chr7 28706966 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3174-S Chr7 7129582 7129584 0 0 Deletion 2 INTERGENIC HOMO FN3174-S Chr8 12553001 12576000 0 0 Deletion 22999 LOC_Os08g20982 retrotransposon protein, putative, unclassified, expressed FN3174-S Chr8 12553001 12576000 0 0 Deletion 22999 LOC_Os08g21000 retrotransposon protein, putative, unclassified, expressed FN3174-S Chr8 12553001 12576000 0 0 Deletion 22999 LOC_Os08g21020 retrotransposon protein, putative, unclassified, expressed FN3174-S Chr8 12553001 12576000 0 0 Deletion 22999 LOC_Os08g21030 retrotransposon protein, putative, unclassified FN3174-S Chr8 12579001 12645000 0 0 Deletion 65999 LOC_Os08g21050 retrotransposon protein, putative, Ty3-gypsy subclass FN3174-S Chr8 12579001 12645000 0 0 Deletion 65999 LOC_Os08g21060 retrotransposon protein, putative, unclassified, expressed FN3174-S Chr8 12579001 12645000 0 0 Deletion 65999 LOC_Os08g21080 hypothetical protein FN3174-S Chr8 12579001 12645000 0 0 Deletion 65999 LOC_Os08g21100 retrotransposon protein, putative, unclassified FN3174-S Chr8 12579001 12645000 0 0 Deletion 65999 LOC_Os08g21110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3174-S Chr8 12579001 12645000 0 0 Deletion 65999 LOC_Os08g21124 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3174-S Chr8 12579001 12645000 0 0 Deletion 65999 LOC_Os08g21140 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3174-S Chr8 12579001 12645000 0 0 Deletion 65999 LOC_Os08g21450 transposon protein, putative, unclassified, expressed FN3174-S Chr8 12700689 12700690 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os08g21280 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3174-S Chr8 15591285 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3174-S Chr8 15721001 15779000 0 0 Deletion 57999 LOC_Os08g25850 expressed protein FN3174-S Chr8 15721001 15779000 0 0 Deletion 57999 LOC_Os08g25860 expressed protein FN3174-S Chr8 15721001 15779000 0 0 Deletion 57999 LOC_Os08g25864 expressed protein FN3174-S Chr8 15721001 15779000 0 0 Deletion 57999 LOC_Os08g25870 retrotransposon protein, putative, unclassified, expressed FN3174-S Chr8 15721001 15779000 0 0 Deletion 57999 LOC_Os08g25880 retrotransposon protein, putative, unclassified, expressed FN3174-S Chr8 15721001 15779000 0 0 Deletion 57999 LOC_Os08g25890 tetratricopeptide repeat, putative, expressed FN3174-S Chr8 15721001 15779000 0 0 Deletion 57999 LOC_Os08g25900 PsbP, putative, expressed FN3174-S Chr8 15721001 15779000 0 0 Deletion 57999 LOC_Os08g25940 transposon protein, putative, unclassified, expressed FN3174-S Chr8 15721001 15779000 0 0 Deletion 57999 LOC_Os08g25950 transposon protein, putative, unclassified, expressed FN3174-S Chr8 15785001 15848000 0 0 Deletion 62999 LOC_Os08g25960 transposon protein, putative, unclassified, expressed FN3174-S Chr8 15785001 15848000 0 0 Deletion 62999 LOC_Os08g25970 retrotransposon protein, putative, unclassified, expressed FN3174-S Chr8 15785001 15848000 0 0 Deletion 62999 LOC_Os08g25980 retrotransposon protein, putative, unclassified, expressed FN3174-S Chr8 15785001 15848000 0 0 Deletion 62999 LOC_Os08g25990 alcohol oxidase-related, putative, expressed FN3174-S Chr8 15785001 15848000 0 0 Deletion 62999 LOC_Os08g26010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3174-S Chr8 15785001 15848000 0 0 Deletion 62999 LOC_Os08g26020 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3174-S Chr8 15785001 15848000 0 0 Deletion 62999 LOC_Os08g26030 expressed protein FN3174-S Chr8 15785001 15848000 0 0 Deletion 62999 LOC_Os08g26040 expressed protein FN3174-S Chr8 15785001 15848000 0 0 Deletion 62999 LOC_Os08g26050 hypothetical protein FN3174-S Chr8 15785001 15848000 0 0 Deletion 62999 LOC_Os08g27740 transposon protein, putative, unclassified, expressed FN3174-S Chr8 16262939 Chr7 12110042 0 Translocation 0 LOC_Os07g20930 retrotransposon protein, putative, unclassified FN3174-S Chr8 16637174 16637174 0 0 Insertion 20 downstream_gene_variant HET FN3174-S Chr8 16782711 16782712 0 0 Deletion 1 INTERGENIC HET FN3174-S Chr8 19087666 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g30910 YDG/SRA domain containing protein, expressed FN3174-S Chr8 19093433 19093434 0 0 Deletion 1 INTERGENIC HET FN3174-S Chr8 19194684 Chr7 9565481 0 Translocation 0 LOC_Os07g16364 expressed protein FN3174-S Chr8 19194749 19194755 0 0 Deletion 6 INTERGENIC HET FN3174-S Chr8 20285311 20285311 0 0 Insertion 16 3_prime_UTR_variant HET FN3174-S Chr8 21686149 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3174-S Chr9 16649893 16649904 0 0 Deletion 11 INTRON HET FN3174-S Chr9 17998327 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3174-S Chr9 18313692 18313692 0 0 Insertion 6 upstream_gene_variant HET FN3174-S Chr9 2265803 Chr2 3963114 0 Translocation 0 FN3174-S Chr9 2266140 Chr2 3963117 0 Translocation 0 FN3174-S Chr9 3259814 G-A 0 0 Single Base Substitution 0 INTERGENIC HET