FN3175-S Chr1 13972882 13972883 0 0 Deletion 1 downstream_gene_variant HET FN3175-S Chr1 14624001 14677000 0 0 Deletion 52999 LOC_Os01g25839 retrotransposon protein, putative, Ty1-copia subclass FN3175-S Chr1 14624001 14677000 0 0 Deletion 52999 LOC_Os01g25860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3175-S Chr1 14624001 14677000 0 0 Deletion 52999 LOC_Os01g25910 retrotransposon protein, putative, unclassified, expressed FN3175-S Chr1 41106524 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3175-S Chr10 15804469 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3175-S Chr10 15804470 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3175-S Chr10 16020973 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g30750 appr-1-p processing enzyme family protein, putative, expressed FN3175-S Chr10 16020974 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g30750 appr-1-p processing enzyme family protein, putative, expressed FN3175-S Chr10 1703886 Chr3 15891627 0 Translocation 0 LOC_Os03g27730 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3175-S Chr10 1703892 Chr3 15892797 0 Translocation 0 FN3175-S Chr10 4198383 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3175-S Chr10 7667802 7667828 0 0 Deletion 26 upstream_gene_variant HET FN3175-S Chr11 11461064 11461065 0 0 Deletion 1 upstream_gene_variant HET FN3175-S Chr11 1147053 1147055 0 0 Deletion 2 INTERGENIC HOMO FN3175-S Chr11 12161722 12161725 0 0 Deletion 3 intergenic_region HET FN3175-S Chr11 12668293 12668293 0 0 Insertion 1 upstream_gene_variant HET FN3175-S Chr11 19542001 19552000 0 0 Deletion 9999 LOC_Os11g33070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3175-S Chr11 19554001 19571000 0 0 Deletion 16999 LOC_Os11g33080 transposon protein, putative, unclassified, expressed FN3175-S Chr11 19554001 19571000 0 0 Deletion 16999 LOC_Os11g34730 membrane associated DUF588 domain containing protein, putative, expressed FN3175-S Chr11 25271686 25271686 0 0 Insertion 1 upstream_gene_variant HET FN3175-S Chr11 687595 Chr7 11905023 0 Translocation 0 FN3175-S Chr11 8069795 8069796 0 0 Deletion 1 upstream_gene_variant HET FN3175-S Chr11 9857555 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3175-S Chr12 24096243 24096250 0 0 Deletion 7 INTERGENIC HOMO FN3175-S Chr12 26071640 26072003 0 0 Inversion 363 FN3175-S Chr12 2973692 Chr11 2085432 0 Translocation 0 LOC_Os12g06250 expressed protein FN3175-S Chr12 8592419 Chr2 15293061 0 Translocation 0 LOC_Os02g26050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3175-S Chr2 26103768 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3175-S Chr2 31844652 31844652 0 0 Insertion 1 upstream_gene_variant HET FN3175-S Chr2 32366699 32366705 0 0 Deletion 6 upstream_gene_variant HET FN3175-S Chr2 9161620 9161621 0 0 Deletion 1 upstream_gene_variant HET FN3175-S Chr3 21534014 21534015 0 0 Deletion 1 INTRON HOMO FN3175-S Chr3 22147578 22147578 0 0 Insertion 2 INTERGENIC HET FN3175-S Chr3 29966319 29966320 0 0 Deletion 1 downstream_gene_variant HET FN3175-S Chr3 30785315 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3175-S Chr3 31800664 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3175-S Chr3 33038089 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3175-S Chr3 34586365 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3175-S Chr3 3604333 Chr2 16646840 0 Translocation 0 FN3175-S Chr3 7465614 7465622 0 0 Deletion 8 upstream_gene_variant HET FN3175-S Chr4 11233766 11233768 0 0 Deletion 2 upstream_gene_variant HET FN3175-S Chr4 20162424 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3175-S Chr4 22702973 22702973 0 0 Insertion 1 upstream_gene_variant HET FN3175-S Chr4 25345431 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g42820 expressed protein FN3175-S Chr4 25919625 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3175-S Chr4 2654663 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3175-S Chr4 29372487 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3175-S Chr4 34604070 A-T 0 0 Single Base Substitution 0 INTRON HET FN3175-S Chr5 17899782 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3175-S Chr5 5071078 5071079 0 0 Deletion 1 frameshift_variant HET LOC_Os05g09110 retrotransposon protein, putative, unclassified, expressed FN3175-S Chr5 5600933 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3175-S Chr5 7611148 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3175-S Chr5 8551300 8551320 0 0 Deletion 20 INTERGENIC HOMO FN3175-S Chr6 14097797 14097800 0 0 Deletion 3 downstream_gene_variant HET FN3175-S Chr6 19599 19599 0 0 Insertion 1 upstream_gene_variant HET FN3175-S Chr6 22658350 Chr1 300013 0 Translocation 0 FN3175-S Chr6 22678779 22678779 0 0 Insertion 2 INTERGENIC HOMO FN3175-S Chr6 26052825 26052827 0 0 Deletion 2 frameshift_variant HET LOC_Os06g43340 retrotransposon protein, putative, unclassified, expressed FN3175-S Chr6 3468251 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3175-S Chr6 6959951 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3175-S Chr6 7075672 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3175-S Chr7 13475180 13475183 0 0 Deletion 3 INTERGENIC HET FN3175-S Chr7 14088476 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3175-S Chr7 15413854 15413854 0 0 Insertion 1 INTERGENIC HOMO FN3175-S Chr7 15450152 T-A 0 0 Single Base Substitution 0 INTRON HET FN3175-S Chr7 17106340 17106341 0 0 Deletion 1 upstream_gene_variant HET FN3175-S Chr7 17261705 Chr4 8718617 0 Translocation 0 FN3175-S Chr7 20396762 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3175-S Chr7 21452040 21452042 0 0 Deletion 2 upstream_gene_variant HET FN3175-S Chr7 28371001 28389000 0 0 Deletion 17999 LOC_Os07g47470 pentatricopeptide, putative, expressed FN3175-S Chr7 28371001 28389000 0 0 Deletion 17999 LOC_Os07g47480 heavy metal-associated domain containing protein, expressed FN3175-S Chr7 28371001 28389000 0 0 Deletion 17999 LOC_Os07g47490 OsGH3.11 - Probable indole-3-acetic acid-amido synthetase, expressed FN3175-S Chr7 314092 314094 0 0 Deletion 2 upstream_gene_variant HET FN3175-S Chr7 3512181 Chr1 3439728 0 Translocation 0 FN3175-S Chr7 6594584 Chr4 18466064 0 Translocation 0 FN3175-S Chr7 7459481 7459497 0 0 Deletion 16 upstream_gene_variant HET FN3175-S Chr7 8458416 8458416 0 0 Insertion 1 upstream_gene_variant HET FN3175-S Chr8 15740446 15740448 0 0 Deletion 2 INTERGENIC HET FN3175-S Chr8 15901663 Chr1 16530859 0 Translocation 0 FN3175-S Chr8 18808807 C-T 0 0 Single Base Substitution 0 INTRON HET FN3175-S Chr8 2233762 Chr5 28810789 0 Translocation 0 FN3175-S Chr8 449893 A-T 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN3175-S Chr8 6304858 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3175-S Chr8 9191549 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3175-S Chr9 21492923 Chr5 706733 0 Translocation 0 LOC_Os09g37230 protein kinase family protein, putative, expressed FN3175-S Chr9 21652881 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3175-S Chr9 6397177 Chr8 17892527 0 Translocation 0