FN3176-S Chr1 10879317 10879317 0 0 Insertion 2 INTRON HET FN3176-S Chr1 18490540 18490551 0 0 Deletion 11 downstream_gene_variant HET FN3176-S Chr1 19781801 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g35720 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3176-S Chr1 36981536 36981538 0 0 Deletion 2 frameshift_variant HET LOC_Os01g63750 glycine-rich protein, putative, expressed FN3176-S Chr10 19498161 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g36440 retrotransposon protein, putative, unclassified, expressed FN3176-S Chr10 2035550 2035620 0 0 Deletion 70 frameshift_variant HET LOC_Os10g04316 retrotransposon protein, putative, unclassified, expressed FN3176-S Chr11 10321343 Chr1 16146421 0 Translocation 0 FN3176-S Chr11 10359615 T-C 0 0 Single Base Substitution 0 INTRON HET FN3176-S Chr11 15036935 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3176-S Chr11 15783622 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3176-S Chr11 1640945 Chr6 4298291 0 Translocation 0 FN3176-S Chr11 19930910 Chr8 19933685 0 Translocation 0 FN3176-S Chr11 22094146 Chr8 7405061 0 Translocation 0 FN3176-S Chr12 11819762 11819766 0 0 Deletion 4 INTERGENIC HET FN3176-S Chr12 12870299 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3176-S Chr12 12932499 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g22900 transposon protein, putative, CACTA, En/Spm sub-class FN3176-S Chr12 17755623 17755624 0 0 Deletion 1 intergenic_region HET FN3176-S Chr12 24002699 Chr1 35517755 0 Translocation 0 FN3176-S Chr12 25414586 Chr4 16576318 0 Translocation 0 LOC_Os12g41060 AP2 domain containing protein, expressed FN3176-S Chr2 23230737 23230748 0 0 Deletion 11 UTR_3_PRIME HOMO FN3176-S Chr3 16310097 16310098 0 0 Deletion 1 upstream_gene_variant HET FN3176-S Chr3 30897859 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3176-S Chr3 9231837 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3176-S Chr4 12861080 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g22690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3176-S Chr4 16513492 16513544 0 0 Deletion 52 upstream_gene_variant HET FN3176-S Chr4 23302893 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3176-S Chr4 23938478 Chr3 5773004 0 Translocation 0 FN3176-S Chr4 3803696 3803698 0 0 Deletion 2 upstream_gene_variant HET FN3176-S Chr4 7071480 7071481 0 0 Deletion 1 upstream_gene_variant HET FN3176-S Chr4 9745996 Chr1 40083558 0 Translocation 0 FN3176-S Chr5 11421900 Chr1 15460374 0 Translocation 0 FN3176-S Chr5 11500342 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g19720 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3176-S Chr5 19696785 19696786 0 0 Deletion 1 upstream_gene_variant HET FN3176-S Chr5 22246987 22246987 0 0 Insertion 3 INTERGENIC HET FN3176-S Chr5 22630015 22630015 0 0 Insertion 10 INTERGENIC HET FN3176-S Chr5 337940 337940 0 0 Insertion 2 INTERGENIC HET FN3176-S Chr6 17768738 17768739 0 0 Deletion 1 upstream_gene_variant HET FN3176-S Chr6 18302702 18302703 0 0 Deletion 1 upstream_gene_variant HET FN3176-S Chr6 20156686 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3176-S Chr6 20751204 A-G 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3176-S Chr6 24554475 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3176-S Chr6 29613748 29613749 0 0 Deletion 1 upstream_gene_variant HET FN3176-S Chr6 3717452 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3176-S Chr7 12386059 12386059 0 0 Insertion 1 upstream_gene_variant HET FN3176-S Chr7 14388795 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3176-S Chr7 3773149 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3176-S Chr7 9602252 9602253 0 0 Deletion 1 downstream_gene_variant HET FN3176-S Chr7 9768454 9768454 0 0 Insertion 1 upstream_gene_variant HET FN3176-S Chr8 10279674 Chr1 2398876 0 Translocation 0 FN3176-S Chr8 11164713 Chr7 5562454 0 Translocation 0 FN3176-S Chr8 17547530 17547536 0 0 Deletion 6 INTERGENIC HET FN3176-S Chr8 20767372 20767372 0 0 Insertion 1 upstream_gene_variant HET FN3176-S Chr8 21755228 21755240 0 0 Deletion 12 INTERGENIC HOMO FN3176-S Chr8 6696487 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3176-S Chr8 7275862 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g12350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3176-S Chr9 17964728 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO