FN3177-S Chr1 10837228 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3177-S Chr1 11096758 C-T 0 0 Single Base Substitution 0 INTRON HET FN3177-S Chr1 14234904 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3177-S Chr1 16066445 16133928 0 0 Inversion 67483 FN3177-S Chr1 25200717 25200717 0 0 Insertion 6 disruptive_inframe_insertion HET LOC_Os01g43970 transposon protein, putative, unclassified, expressed FN3177-S Chr1 26156269 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3177-S Chr1 26769226 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3177-S Chr1 35894694 35894696 0 0 Deletion 2 INTRON HOMO FN3177-S Chr1 4208251 4208253 0 0 Deletion 2 INTERGENIC HOMO FN3177-S Chr1 857410 857423 0 0 Deletion 13 INTERGENIC HOMO FN3177-S Chr10 9680393 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g19010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3177-S Chr10 9680394 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g19010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3177-S Chr11 17928209 Chr3 21440143 0 Translocation 0 FN3177-S Chr11 28476996 28476997 0 0 Deletion 1 INTRON HET FN3177-S Chr11 7731082 7731096 0 0 Deletion 14 upstream_gene_variant HET FN3177-S Chr11 8184966 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3177-S Chr12 1627890 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3177-S Chr12 19804462 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3177-S Chr12 25289760 25289760 0 0 Insertion 2 INTERGENIC HET FN3177-S Chr12 8264642 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3177-S Chr2 1760887 T-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3177-S Chr2 21658126 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3177-S Chr2 22745582 22745582 0 0 Insertion 2 UTR_3_PRIME HET FN3177-S Chr2 30614363 G-C 0 0 Single Base Substitution 0 INTRON HET FN3177-S Chr2 3746309 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3177-S Chr2 4335492 4991691 0 0 Inversion 656199 FN3177-S Chr2 4412766 4990504 0 0 Inversion 577738 LOC_Os02g08300 RAD23 DNA repair protein, putative, expressed FN3177-S Chr3 1189726 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3177-S Chr3 11921010 T-A 0 0 Single Base Substitution 0 INTRON HET FN3177-S Chr3 14511351 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3177-S Chr3 15172308 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3177-S Chr3 22906322 22906368 0 0 Deletion 46 downstream_gene_variant HET FN3177-S Chr3 2347830 2347831 0 0 Deletion 1 INTERGENIC HET FN3177-S Chr3 24739053 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3177-S Chr3 25467570 C-T 0 0 Single Base Substitution 0 INTRON HET FN3177-S Chr3 28027433 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3177-S Chr3 29988028 29988029 0 0 Deletion 1 INTERGENIC HET FN3177-S Chr3 34340281 34340288 0 0 Deletion 7 UTR_5_PRIME HOMO FN3177-S Chr3 34352986 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3177-S Chr3 6607103 6607103 0 0 Insertion 1 upstream_gene_variant HET FN3177-S Chr3 9069895 9069896 0 0 Deletion 1 INTRON HET FN3177-S Chr3 9072259 C-T 0 0 Single Base Substitution 0 INTRON HET FN3177-S Chr4 13190174 A-T 0 0 Single Base Substitution 0 INTRON HET FN3177-S Chr4 167540 167543 0 0 Deletion 3 INTERGENIC HET FN3177-S Chr4 21298816 21298822 0 0 Deletion 6 INTERGENIC HOMO FN3177-S Chr4 26863945 26863946 0 0 Deletion 1 INTRON HOMO FN3177-S Chr4 4501295 A-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3177-S Chr4 8681443 T-A 0 0 Single Base Substitution 0 INTRON HET FN3177-S Chr5 8144929 G-A 0 0 Single Base Substitution 0 STOP_GAINED HOMO LOC_Os05g14440 transposon protein, putative, Ac/Ds sub-class, expressed FN3177-S Chr5 8164732 8164736 0 0 Deletion 4 INTERGENIC HOMO FN3177-S Chr5 9790422 9790422 0 0 Insertion 1 intron_variant HET FN3177-S Chr6 12672722 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3177-S Chr6 17652576 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3177-S Chr6 18655811 18655812 0 0 Deletion 1 frameshift_variant HET LOC_Os06g32080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3177-S Chr6 25302347 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3177-S Chr6 25302348 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3177-S Chr6 25795463 Chr1 16142640 0 Translocation 0 FN3177-S Chr6 25795466 Chr1 16140213 0 Translocation 0 FN3177-S Chr6 28604747 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os06g47170 retrotransposon protein, putative, unclassified, expressed FN3177-S Chr6 29947123 29975225 0 0 Inversion 28102 FN3177-S Chr6 29947627 29984269 0 0 Inversion 36642 FN3177-S Chr6 29976001 29984000 0 0 Deletion 7999 LOC_Os06g49490 ZOS6-10 - C2H2 zinc finger protein, expressed FN3177-S Chr6 29976001 29984000 0 0 Deletion 7999 LOC_Os06g49500 integral membrane protein, putative, expressed FN3177-S Chr6 29976001 29984000 0 0 Deletion 7999 LOC_Os06g49970 alpha-amylase precursor, putative, expressed FN3177-S Chr6 9896752 Chr1 9951771 0 Translocation 0 FN3177-S Chr7 10233847 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3177-S Chr7 13313445 13313446 0 0 Deletion 1 INTERGENIC HOMO FN3177-S Chr7 16239310 16239310 0 0 Insertion 1 downstream_gene_variant HET FN3177-S Chr7 17726082 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g30050 retrotransposon protein, putative, unclassified, expressed FN3177-S Chr7 17726083 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g30050 retrotransposon protein, putative, unclassified, expressed FN3177-S Chr7 18898804 18898804 0 0 Insertion 1 downstream_gene_variant HET FN3177-S Chr7 23081131 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3177-S Chr7 26511502 26511502 0 0 Insertion 2 INTERGENIC HET FN3177-S Chr7 4108810 Chr1 16066437 0 Translocation 0 FN3177-S Chr7 8437178 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3177-S Chr8 11298338 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g18940 transposon protein, putative, unclassified, expressed FN3177-S Chr8 1226744 1226744 0 0 Insertion 41 downstream_gene_variant HET FN3177-S Chr8 13369785 13388033 0 0 Inversion 18248 FN3177-S Chr8 14632082 14632082 0 0 Insertion 2 upstream_gene_variant HET FN3177-S Chr8 17044703 17044706 0 0 Deletion 3 upstream_gene_variant HET FN3177-S Chr8 22845090 22845091 0 0 Deletion 1 downstream_gene_variant HET FN3177-S Chr8 2806238 Chr1 16065138 0 Translocation 0 LOC_Os01g28690 nucleoporin autopeptidase domain containing protein, expressed FN3177-S Chr8 2806241 Chr1 16066438 0 Translocation 0 FN3177-S Chr8 2806242 Chr7 4108637 0 Translocation 0 FN3177-S Chr8 4094558 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3177-S Chr8 7348275 7348276 0 0 Deletion 1 upstream_gene_variant HET FN3177-S Chr9 5959235 5959235 0 0 Insertion 38 upstream_gene_variant HET FN3177-S Chr9 7847293 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3177-S Chr9 8941257 Chr1 30237136 0 Translocation 0