FN3179-S Chr1 13562460 13562477 0 0 Deletion 17 intron_variant HET FN3179-S Chr1 14365158 14365160 0 0 Deletion 2 upstream_gene_variant HET FN3179-S Chr1 14528424 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g25630 NB-ARC domain containing protein, expressed FN3179-S Chr1 16890676 16890676 0 0 Insertion 1 downstream_gene_variant HET FN3179-S Chr1 16975172 16975173 0 0 Deletion 1 upstream_gene_variant HET FN3179-S Chr1 18041371 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3179-S Chr1 19946813 19946815 0 0 Deletion 2 upstream_gene_variant HET FN3179-S Chr1 21978980 A-G 0 0 Single Base Substitution 0 INTRON HET FN3179-S Chr1 23420341 23420341 0 0 Insertion 1 upstream_gene_variant HET FN3179-S Chr1 29697153 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3179-S Chr1 871584 871585 0 0 Deletion 1 downstream_gene_variant HET FN3179-S Chr10 10163397 Chr1 12947268 0 Translocation 0 LOC_Os10g20230 expressed protein FN3179-S Chr10 12141649 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3179-S Chr10 12629403 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3179-S Chr10 19591247 19591248 0 0 Deletion 1 downstream_gene_variant HET FN3179-S Chr10 22723913 Chr4 11674384 0 Translocation 0 FN3179-S Chr10 2607414 Chr6 15332605 0 Translocation 0 FN3179-S Chr10 5439118 5439124 0 0 Deletion 6 downstream_gene_variant HET FN3179-S Chr10 6226775 6226792 0 0 Deletion 17 upstream_gene_variant HET FN3179-S Chr10 8677784 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g17250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3179-S Chr11 11943459 11943459 0 0 Insertion 1 downstream_gene_variant HET FN3179-S Chr11 14181250 14181250 0 0 Insertion 1 downstream_gene_variant HET FN3179-S Chr11 20214949 20214949 0 0 Insertion 1 downstream_gene_variant HET FN3179-S Chr11 20696997 20697011 0 0 Deletion 14 intron_variant HET FN3179-S Chr11 21052847 21052848 0 0 Deletion 1 upstream_gene_variant HET FN3179-S Chr11 23661838 23661838 0 0 Insertion 1 downstream_gene_variant HET FN3179-S Chr11 27431204 Chr1 14360022 0 Translocation 0 FN3179-S Chr11 3325245 3325249 0 0 Deletion 4 upstream_gene_variant HET FN3179-S Chr12 13141824 Chr7 10235940 0 Translocation 0 FN3179-S Chr12 14492274 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3179-S Chr12 15592474 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3179-S Chr12 16233976 16233976 0 0 Insertion 1 upstream_gene_variant HET FN3179-S Chr12 20493706 20493707 0 0 Deletion 1 upstream_gene_variant HET FN3179-S Chr12 22916487 Chr2 23806504 0 Translocation 0 FN3179-S Chr12 24691399 24691399 0 0 Insertion 1 frameshift_variant&stop_gained HET LOC_Os12g39950 expressed protein FN3179-S Chr12 3380524 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g06920 NBS-LRR disease resistance protein, putative, expressed FN3179-S Chr12 9228999 9229000 0 0 Deletion 1 upstream_gene_variant HET FN3179-S Chr2 11414973 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g19540 OsFBX47 - F-box domain containing protein, expressed FN3179-S Chr2 13594399 13594400 0 0 Deletion 1 downstream_gene_variant HET FN3179-S Chr2 13912128 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3179-S Chr2 18906055 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3179-S Chr2 20544678 20657868 0 0 Inversion 113190 FN3179-S Chr2 20544687 20657882 0 0 Inversion 113195 FN3179-S Chr2 20657583 T-C 0 0 Single Base Substitution 0 INTRON HET FN3179-S Chr2 23438064 23438065 0 0 Deletion 1 INTRON HOMO FN3179-S Chr2 27283855 27283855 0 0 Insertion 1 downstream_gene_variant HET FN3179-S Chr2 29157404 29157404 0 0 Insertion 1 intron_variant HET FN3179-S Chr2 8699388 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3179-S Chr3 12687112 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3179-S Chr3 1302609 Chr2 15512942 0 Translocation 0 FN3179-S Chr3 13362876 13362877 0 0 Deletion 1 frameshift_variant HET LOC_Os03g23110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3179-S Chr3 16930275 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3179-S Chr3 17364983 17364986 0 0 Deletion 3 inframe_deletion HET LOC_Os03g30450 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3179-S Chr3 18272460 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3179-S Chr3 18272461 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3179-S Chr3 21986462 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3179-S Chr3 3298778 3298832 0 0 Deletion 54 disruptive_inframe_deletion HET LOC_Os03g06550 retrotransposon protein, putative, unclassified, expressed FN3179-S Chr3 33212039 33297852 0 0 Inversion 85813 FN3179-S Chr3 33212041 33297852 0 0 Inversion 85811 FN3179-S Chr3 3707272 3707273 0 0 Deletion 1 5_prime_UTR_variant HET FN3179-S Chr3 7902517 7902518 0 0 Deletion 1 upstream_gene_variant HET FN3179-S Chr3 9428792 Chr1 16513483 0 Translocation 0 FN3179-S Chr3 9814996 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN3179-S Chr3 9923786 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3179-S Chr3 9923787 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3179-S Chr4 13992862 C-T 0 0 Single Base Substitution 0 INTRON HET FN3179-S Chr4 13992863 T-C 0 0 Single Base Substitution 0 INTRON HET FN3179-S Chr4 14493375 C-G 0 0 Single Base Substitution 0 START_GAINED HET FN3179-S Chr4 1719460 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g03810 OsSub38 - Putative Subtilisin homologue, expressed FN3179-S Chr4 17228603 Chr3 26761847 0 Translocation 0 LOC_Os03g47310 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3179-S Chr4 2035519 Chr1 19122377 0 Translocation 0 LOC_Os01g34670 transposon protein, putative, unclassified, expressed FN3179-S Chr4 2035519 Chr1 19122377 0 Translocation 0 LOC_Os04g04330 receptor-like protein kinase 2 precursor, putative, expressed FN3179-S Chr4 2542302 2542303 0 0 Deletion 1 downstream_gene_variant HET FN3179-S Chr4 29042498 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3179-S Chr4 3856199 3856206 0 0 Deletion 7 intron_variant HET FN3179-S Chr4 4431807 4431807 0 0 Insertion 1 upstream_gene_variant HET FN3179-S Chr4 555489 555795 0 0 Deletion 306 upstream_gene_variant HET FN3179-S Chr4 5814020 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3179-S Chr4 724907 Chr3 31273242 0 Translocation 0 FN3179-S Chr4 7408920 7408920 0 0 Insertion 1 upstream_gene_variant HET FN3179-S Chr4 7415802 7415802 0 0 Insertion 1 frameshift_variant&stop_lost&splice_region_variant HET LOC_Os04g13340 retrotransposon protein, putative, unclassified FN3179-S Chr5 12108729 12108729 0 0 Insertion 1 upstream_gene_variant HET FN3179-S Chr5 13999873 13999874 0 0 Deletion 1 frameshift_variant HET LOC_Os05g24200 retrotransposon protein, putative, unclassified, expressed FN3179-S Chr5 14971406 14971407 0 0 Deletion 1 downstream_gene_variant HET FN3179-S Chr5 22319991 22319992 0 0 Deletion 1 upstream_gene_variant HET FN3179-S Chr5 25702242 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3179-S Chr5 27330312 27330314 0 0 Deletion 2 upstream_gene_variant HET FN3179-S Chr5 5186492 5186513 0 0 Deletion 21 downstream_gene_variant HET FN3179-S Chr6 14169440 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3179-S Chr6 161254 161255 0 0 Deletion 1 upstream_gene_variant HET FN3179-S Chr6 17431306 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3179-S Chr6 19300926 19300959 0 0 Deletion 33 downstream_gene_variant HET FN3179-S Chr6 20280083 T-G 0 0 Single Base Substitution 0 INTRON HOMO FN3179-S Chr6 22905916 22905916 0 0 Insertion 2 downstream_gene_variant HET FN3179-S Chr6 26185717 T-C 0 0 Single Base Substitution 0 INTRON HET FN3179-S Chr6 4157142 4157143 0 0 Deletion 1 upstream_gene_variant HET FN3179-S Chr6 4417735 4417811 0 0 Deletion 76 downstream_gene_variant HET FN3179-S Chr6 8536355 8536356 0 0 Deletion 1 upstream_gene_variant HET FN3179-S Chr7 10683389 10683389 0 0 Insertion 1 upstream_gene_variant HET FN3179-S Chr7 11606100 11606105 0 0 Deletion 5 upstream_gene_variant HET FN3179-S Chr7 12876803 12876803 0 0 Insertion 1 upstream_gene_variant HET FN3179-S Chr7 14068283 14068283 0 0 Insertion 1 upstream_gene_variant HET FN3179-S Chr7 15138848 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3179-S Chr7 16782460 16782460 0 0 Insertion 1 intergenic_region HET FN3179-S Chr7 24512509 Chr1 10950209 0 Translocation 0 FN3179-S Chr7 29240967 29240975 0 0 Deletion 8 upstream_gene_variant HET FN3179-S Chr7 9330220 Chr4 3212535 0 Translocation 0 FN3179-S Chr8 13863876 13863897 0 0 Deletion 21 upstream_gene_variant HET FN3179-S Chr8 24557202 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3179-S Chr8 5173800 Chr6 7992798 0 Translocation 0 FN3179-S Chr8 6597855 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3179-S Chr9 13333418 Chr3 19876081 0 Translocation 0 FN3179-S Chr9 17271826 Chr4 4107273 0 Translocation 0 LOC_Os04g07720 retrotransposon protein, putative, unclassified, expressed FN3179-S Chr9 1906312 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3179-S Chr9 3086489 3086491 0 0 Deletion 2 downstream_gene_variant HET FN3179-S Chr9 4148690 4148690 0 0 Insertion 1 downstream_gene_variant HET FN3179-S Chr9 4701650 4701650 0 0 Insertion 1 downstream_gene_variant HET FN3179-S Chr9 4721079 4721080 0 0 Deletion 1 upstream_gene_variant HET FN3179-S Chr9 6917366 T-A 0 0 Single Base Substitution 0 INTERGENIC HET