FN3181-S Chr1 13920763 13920766 0 0 Deletion 3 INTERGENIC HOMO FN3181-S Chr1 28399552 28580801 0 0 Inversion 181249 FN3181-S Chr1 28697776 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3181-S Chr1 3665198 3665198 0 0 Insertion 2 UTR_3_PRIME HET FN3181-S Chr1 40378062 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3181-S Chr10 10130029 G-A 0 0 Single Base Substitution 0 INTRON HET FN3181-S Chr10 22453834 Chr8 19268753 0 Translocation 0 FN3181-S Chr10 2952152 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3181-S Chr11 18032334 Chr4 8324480 0 Translocation 0 FN3181-S Chr11 19735829 Chr9 17966312 0 Translocation 0 FN3181-S Chr11 25090109 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3181-S Chr11 2973114 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os11g06220 expressed protein FN3181-S Chr11 3713536 3713544 0 0 Deletion 8 INTERGENIC HOMO FN3181-S Chr12 16493847 Chr7 13266627 0 Translocation 0 FN3181-S Chr12 19879170 19879171 0 0 Deletion 1 INTERGENIC HET FN3181-S Chr12 21684263 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3181-S Chr12 23591233 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g38430 SR repressor protein, putative, expressed FN3181-S Chr12 4233252 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3181-S Chr12 4729117 5110444 0 0 Inversion 381327 FN3181-S Chr12 4729120 5110460 0 0 Inversion 381340 FN3181-S Chr12 748521 748521 0 0 Insertion 2 INTERGENIC HET FN3181-S Chr12 8266454 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3181-S Chr2 1582927 1582940 0 0 Deletion 13 INTERGENIC HET FN3181-S Chr2 17473750 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3181-S Chr2 17994851 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3181-S Chr2 18699651 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3181-S Chr2 2825595 A-T 0 0 Single Base Substitution 0 INTRON HET FN3181-S Chr2 29130148 29130149 0 0 Deletion 1 downstream_gene_variant HET FN3181-S Chr2 3025742 3025744 0 0 Deletion 2 INTERGENIC HOMO FN3181-S Chr2 34679271 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3181-S Chr3 1149157 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3181-S Chr3 20111936 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3181-S Chr3 28604609 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN3181-S Chr3 30230114 C-T 0 0 Single Base Substitution 0 UTR_5_PRIME HOMO FN3181-S Chr3 6549749 6549750 0 0 Deletion 1 upstream_gene_variant HET FN3181-S Chr3 9469443 9469444 0 0 Deletion 1 downstream_gene_variant HET FN3181-S Chr4 12153925 12153925 0 0 Insertion 1 upstream_gene_variant HET FN3181-S Chr4 19677528 19677528 0 0 Insertion 1 INTRON HOMO FN3181-S Chr4 21204623 21204628 0 0 Deletion 5 INTERGENIC HOMO FN3181-S Chr4 26006114 26006118 0 0 Deletion 4 downstream_gene_variant HET FN3181-S Chr4 29870338 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3181-S Chr4 5757812 Chr3 13473740 0 Translocation 0 FN3181-S Chr5 1278974 1278976 0 0 Deletion 2 5_prime_UTR_variant HET FN3181-S Chr5 13406769 G-A 0 0 Single Base Substitution 0 INTRON HET FN3181-S Chr5 13406770 T-A 0 0 Single Base Substitution 0 INTRON HET FN3181-S Chr5 14914882 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31650 expressed protein FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31660 expressed protein FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31670 AWPM-19-like membrane family protein, putative, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31680 expressed protein FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31690 expressed protein FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31700 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31710 expressed protein FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31720 stromal membrane-associated protein, putative, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31730 transporter, monovalent cation:proton antiporter-2 family, putative, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31740 cytochrome P450 86A2, putative, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31744 expressed protein FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31750 annexin, putative, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31760 annexin, putative, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31770 tetratricopeptide repeat containing protein, putative, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31780 adaptor complexes medium subunit family domain containing protein, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31785 expressed protein FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31800 hypothetical protein FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31810 retrotransposon protein, putative, unclassified FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31820 expressed protein FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31830 aspartyl protease family protein, putative, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31840 expressed protein FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31850 retrotransposon protein, putative, unclassified, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31860 retrotransposon protein, putative, unclassified, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31890 aspartyl protease family protein, putative, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31900 expressed protein FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31910 white-brown complex homolog protein 16, putative, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31920 FYVE zinc finger domain containing protein, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31930 retrotransposon protein, putative, unclassified, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31940 retrotransposon protein, putative, unclassified, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31970 expressed protein FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g31990 retrotransposon protein, putative, unclassified FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32000 transposon protein, putative, unclassified FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32010 hypothetical protein FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32020 expressed protein FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32030 transposon protein, putative, unclassified, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32040 retrotransposon protein, putative, unclassified, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32060 expressed protein FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32070 LRP1, putative, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32080 retrotransposon protein, putative, unclassified FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32090 expressed protein FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32100 expressed protein FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32110 COBRA, putative, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32120 alpha 1,3-xylosyltransferase, putative, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32130 expressed protein FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32140 NAD dependent epimerase/dehydratase family protein, putative, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32150 expressed protein FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32160 expressed protein FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32170 TKL_IRAK_CR4L.5 - The CR4L subfamily has homology with Crinkly4, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32180 acetyltransferase, GNAT family, putative, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32190 tungus CG8253-PA, putative, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32200 expressed protein FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32210 NAD kinase, putative, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32220 L1P family of ribosomal proteins domain containing protein, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32230 expressed protein FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32240 expressed protein FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32250 expressed protein FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32260 expressed protein FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32270 AP2 domain containing protein, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32280 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32290 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32300 expressed protein FN3181-S Chr5 18411001 18841000 0 0 Deletion 429999 LOC_Os05g32310 LSM domain containing protein, expressed FN3181-S Chr5 20397125 20397217 0 0 Deletion 92 frameshift_variant&stop_lost&splice_region_variant HET LOC_Os05g34420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3181-S Chr5 21863695 21863696 0 0 Deletion 1 upstream_gene_variant HET FN3181-S Chr5 21863696 21863697 0 0 Deletion 1 upstream_gene_variant HET FN3181-S Chr5 22467378 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3181-S Chr5 22752860 Chr4 405568 0 Translocation 0 FN3181-S Chr5 22926467 22926473 0 0 Deletion 6 INTERGENIC HET FN3181-S Chr5 314129 Chr1 18404001 0 Translocation 0 FN3181-S Chr5 314132 Chr1 18404423 0 Translocation 0 FN3181-S Chr5 5130374 5130447 0 0 Deletion 73 upstream_gene_variant HET FN3181-S Chr6 1153506 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3181-S Chr6 12924608 12924608 0 0 Insertion 2 INTERGENIC HET FN3181-S Chr6 1615665 1615672 0 0 Deletion 7 INTRON HET FN3181-S Chr6 19422410 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3181-S Chr6 20318125 20318132 0 0 Deletion 7 upstream_gene_variant HET FN3181-S Chr6 26389614 T-C 0 0 Single Base Substitution 0 INTRON HET FN3181-S Chr6 27833069 27833070 0 0 Deletion 1 INTERGENIC HET FN3181-S Chr6 5543356 5543359 0 0 Deletion 3 INTERGENIC HET FN3181-S Chr6 9295863 9295875 0 0 Deletion 12 disruptive_inframe_deletion HET LOC_Os06g16310 retrotransposon protein, putative, unclassified, expressed FN3181-S Chr7 10920008 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3181-S Chr7 19640629 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3181-S Chr7 19715886 19715887 0 0 Deletion 1 INTRON HOMO FN3181-S Chr7 27027260 27027266 0 0 Deletion 6 INTERGENIC HOMO FN3181-S Chr7 27359126 27359139 0 0 Deletion 13 INTERGENIC HOMO FN3181-S Chr7 4124573 4124573 0 0 Insertion 2 INTERGENIC HET FN3181-S Chr8 12575994 12575994 0 0 Insertion 1 downstream_gene_variant HET FN3181-S Chr8 13038545 Chr4 29063966 0 Translocation 0 FN3181-S Chr8 1863211 Chr7 11426048 0 Translocation 0 FN3181-S Chr8 2334689 2334693 0 0 Deletion 4 INTERGENIC HET FN3181-S Chr8 23616490 23616495 0 0 Deletion 5 INTERGENIC HOMO FN3181-S Chr8 25082434 25082470 0 0 Deletion 36 intergenic_region HET FN3181-S Chr8 25598603 25598608 0 0 Deletion 5 INTERGENIC HOMO FN3181-S Chr8 7921724 A-G 0 0 Single Base Substitution 0 INTRON HET FN3181-S Chr8 9811693 9811693 0 0 Insertion 1 frameshift_variant HET LOC_Os08g16090 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3181-S Chr9 13194182 Chr2 30102441 0 Translocation 0 FN3181-S Chr9 17055483 17055483 0 0 Insertion 1 upstream_gene_variant HET FN3181-S Chr9 4919476 4919476 0 0 Insertion 1 upstream_gene_variant HET