FN3182-S Chr1 10351070 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3182-S Chr1 13045379 13045379 0 0 Insertion 1 upstream_gene_variant HET FN3182-S Chr1 24292437 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3182-S Chr1 27234664 27234666 0 0 Deletion 2 upstream_gene_variant HET FN3182-S Chr1 28808960 28808960 0 0 Insertion 1 downstream_gene_variant HET FN3182-S Chr1 39580856 39580858 0 0 Deletion 2 FRAME_SHIFT HOMO LOC_Os01g68080 harpin-induced protein 1 domain containing protein, expressed FN3182-S Chr1 39856638 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3182-S Chr10 17769182 17769188 0 0 Deletion 6 INTRON HOMO FN3182-S Chr10 18932212 18932216 0 0 Deletion 4 upstream_gene_variant HET FN3182-S Chr10 21082553 21082554 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os10g39480 retrotransposon protein, putative, Ty3-gypsy subclass FN3182-S Chr10 4378354 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3182-S Chr10 5113810 Chr4 2989350 0 Translocation 0 FN3182-S Chr10 8452042 8452042 0 0 Insertion 1 intron_variant HET FN3182-S Chr11 10965949 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3182-S Chr11 11746880 Chr2 27012889 0 Translocation 0 FN3182-S Chr11 11755288 Chr2 18688046 0 Translocation 0 FN3182-S Chr11 12952779 G-A 0 0 Single Base Substitution 0 INTRON HET FN3182-S Chr11 14100823 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3182-S Chr11 17782514 Chr6 14001920 0 Translocation 0 FN3182-S Chr11 19842339 Chr3 29848934 0 Translocation 0 FN3182-S Chr11 20783228 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3182-S Chr11 24779950 24779952 0 0 Deletion 2 INTERGENIC HET FN3182-S Chr11 25992795 Chr6 9594726 0 Translocation 0 FN3182-S Chr11 27298574 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3182-S Chr11 8879590 Chr5 4928632 0 Translocation 0 FN3182-S Chr12 15291864 15291864 0 0 Insertion 1 upstream_gene_variant HET FN3182-S Chr12 15579584 15579588 0 0 Deletion 4 upstream_gene_variant HET FN3182-S Chr12 19092048 Chr1 24366466 0 Translocation 0 FN3182-S Chr12 6021473 6021476 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os12g11180 retrotransposon protein, putative, unclassified, expressed FN3182-S Chr12 7456734 7456735 0 0 Deletion 1 upstream_gene_variant HET FN3182-S Chr2 10359448 10359449 0 0 Deletion 1 INTERGENIC HOMO FN3182-S Chr2 18325198 18325220 0 0 Deletion 22 upstream_gene_variant HET FN3182-S Chr2 25079324 25079338 0 0 Deletion 14 FRAME_SHIFT HOMO LOC_Os02g41720 transposon protein, putative, unclassified, expressed FN3182-S Chr2 33468691 33468692 0 0 Deletion 1 upstream_gene_variant HET FN3182-S Chr2 34764454 34764461 0 0 Deletion 7 UTR_5_PRIME HET FN3182-S Chr2 3941157 3941157 0 0 Insertion 1 upstream_gene_variant HET FN3182-S Chr2 7404922 A-T 0 0 Single Base Substitution 0 INTRON HET FN3182-S Chr3 16236892 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os03g28204 transposon protein, putative, unclassified, expressed FN3182-S Chr3 17308988 17308989 0 0 Deletion 1 upstream_gene_variant HET FN3182-S Chr3 22923257 22923258 0 0 Deletion 1 upstream_gene_variant HET FN3182-S Chr3 29737893 29737894 0 0 Deletion 1 frameshift_variant HET LOC_Os03g51850 retrotransposon protein, putative, unclassified FN3182-S Chr3 31101484 31101498 0 0 Deletion 14 downstream_gene_variant HET FN3182-S Chr3 4504541 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3182-S Chr4 10162783 C-T 0 0 Single Base Substitution 0 INTRON HET FN3182-S Chr4 13888214 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3182-S Chr4 1599622 C-A 0 0 Single Base Substitution 0 INTRON HET FN3182-S Chr4 17030176 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3182-S Chr4 21680455 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3182-S Chr4 21699147 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3182-S Chr4 2408594 2408598 0 0 Deletion 4 intron_variant HET FN3182-S Chr4 27441010 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3182-S Chr4 33034902 33034902 0 0 Insertion 1 frameshift_variant HET LOC_Os04g55530 retrotransposon protein, putative, unclassified, expressed FN3182-S Chr4 3615307 Chr1 21959763 0 Translocation 0 FN3182-S Chr4 7340169 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3182-S Chr4 7348488 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3182-S Chr4 8014561 G-A 0 0 Single Base Substitution 0 INTRON HET FN3182-S Chr5 11965623 11965623 0 0 Insertion 1 downstream_gene_variant HET FN3182-S Chr5 20860796 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3182-S Chr5 24022300 24022317 0 0 Deletion 17 INTERGENIC HOMO FN3182-S Chr5 28724663 Chr3 9391706 0 Translocation 0 FN3182-S Chr5 5057599 5057600 0 0 Deletion 1 upstream_gene_variant HET FN3182-S Chr6 18628710 18628711 0 0 Deletion 1 downstream_gene_variant HET FN3182-S Chr6 18875118 18875118 0 0 Insertion 1 upstream_gene_variant HET FN3182-S Chr6 21695000 21695001 0 0 Deletion 1 upstream_gene_variant HET FN3182-S Chr6 416678 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3182-S Chr6 4240065 Chr1 38042937 0 Translocation 0 FN3182-S Chr6 5132678 5132679 0 0 Deletion 1 INTERGENIC HET FN3182-S Chr7 11718576 12295781 0 0 Inversion 577205 LOC_Os07g21980 retrotransposon protein, putative, unclassified, expressed FN3182-S Chr7 1745445 Chr2 11359073 0 Translocation 0 LOC_Os07g04110 legume lectins beta domain containing protein, expressed FN3182-S Chr7 19727682 Chr5 1618641 0 Translocation 0 FN3182-S Chr7 27956123 27956123 0 0 Insertion 1 upstream_gene_variant HET FN3182-S Chr8 15533155 15533155 0 0 Insertion 2 upstream_gene_variant HET FN3182-S Chr8 15533155 15533156 0 0 Deletion 1 upstream_gene_variant HET FN3182-S Chr8 5200707 5200713 0 0 Deletion 6 upstream_gene_variant HET FN3182-S Chr8 5719794 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3182-S Chr8 8359394 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g13950 transposon protein, putative, CACTA, En/Spm sub-class FN3182-S Chr9 1026763 1026766 0 0 Deletion 3 upstream_gene_variant HET FN3182-S Chr9 21972228 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3182-S Chr9 319609 319609 0 0 Insertion 2 upstream_gene_variant HET FN3182-S Chr9 3583721 G-A 0 0 Single Base Substitution 0 INTRON HET FN3182-S Chr9 5493260 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g10080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3182-S Chr9 5493261 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g10080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3182-S Chr9 8253070 8253071 0 0 Deletion 1 downstream_gene_variant HET