FN3183-S Chr1 19673144 19711104 0 0 Inversion 37960 LOC_Os01g35560 retrotransposon protein, putative, unclassified, expressed FN3183-S Chr1 1973401 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3183-S Chr1 23411203 23411205 0 0 Deletion 2 INTERGENIC HET FN3183-S Chr1 24234190 24330782 0 0 Inversion 96592 FN3183-S Chr1 24234199 24330873 0 0 Inversion 96674 FN3183-S Chr1 27964758 A-G 0 0 Single Base Substitution 0 INTRON HET FN3183-S Chr1 4595727 4595751 0 0 Deletion 24 INTERGENIC HOMO FN3183-S Chr1 7397180 7397184 0 0 Deletion 4 INTERGENIC HET FN3183-S Chr1 9366514 9809945 0 0 Inversion 443431 LOC_Os01g16500 retrotransposon protein, putative, unclassified, expressed FN3183-S Chr1 9366520 9809956 0 0 Inversion 443436 LOC_Os01g16500 retrotransposon protein, putative, unclassified, expressed FN3183-S Chr10 15952374 15952375 0 0 Deletion 1 upstream_gene_variant HET FN3183-S Chr10 17836739 17836740 0 0 Deletion 1 INTERGENIC HOMO FN3183-S Chr10 5409479 5409481 0 0 Deletion 2 upstream_gene_variant HET FN3183-S Chr11 16277081 16277081 0 0 Insertion 20 upstream_gene_variant HET FN3183-S Chr11 17397757 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3183-S Chr11 18148913 Chr6 6320284 0 Translocation 0 FN3183-S Chr11 25665524 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3183-S Chr11 25781635 25781636 0 0 Deletion 1 INTERGENIC HET FN3183-S Chr11 8910055 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3183-S Chr12 12144255 Chr5 5504612 0 Translocation 0 FN3183-S Chr12 15113478 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os12g26010 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3183-S Chr12 15641842 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3183-S Chr12 17450627 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3183-S Chr12 18443643 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3183-S Chr12 19773569 19773586 0 0 Deletion 17 downstream_gene_variant HET FN3183-S Chr12 21004180 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3183-S Chr12 21230297 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3183-S Chr12 2193001 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3183-S Chr3 10428433 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3183-S Chr3 16659193 16659194 0 0 Deletion 1 INTERGENIC HOMO FN3183-S Chr3 30464694 30464696 0 0 Deletion 2 downstream_gene_variant HET FN3183-S Chr3 5013957 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3183-S Chr3 6275583 6275584 0 0 Deletion 1 5_prime_UTR_variant HET FN3183-S Chr3 6617359 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3183-S Chr4 13602289 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3183-S Chr4 23684107 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g39740 retrotransposon protein, putative, unclassified, expressed FN3183-S Chr4 26774605 26774605 0 0 Insertion 2 INTERGENIC HET FN3183-S Chr4 2895996 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g05670 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3183-S Chr4 3502556 3502556 0 0 Insertion 1 upstream_gene_variant HET FN3183-S Chr4 7632454 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3183-S Chr4 8628198 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3183-S Chr5 15212912 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3183-S Chr5 18653489 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3183-S Chr5 3198857 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3183-S Chr5 6520883 6520884 0 0 Deletion 1 INTERGENIC HET FN3183-S Chr5 666158 666158 0 0 Insertion 42 intergenic_region HET FN3183-S Chr5 8336541 8336542 0 0 Deletion 1 upstream_gene_variant HET FN3183-S Chr5 9957491 9957638 0 0 Deletion 147 upstream_gene_variant HET FN3183-S Chr6 10758390 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3183-S Chr6 12216078 12216121 0 0 Deletion 43 downstream_gene_variant HET FN3183-S Chr6 15971973 T-C 0 0 Single Base Substitution 0 INTRON HET FN3183-S Chr6 23205139 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3183-S Chr6 23669116 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3183-S Chr6 3665873 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3183-S Chr7 13614313 C-T 0 0 Single Base Substitution 0 INTRON HET FN3183-S Chr7 14258363 14258417 0 0 Deletion 54 intergenic_region HET FN3183-S Chr7 16843999 16844003 0 0 Deletion 4 upstream_gene_variant HET FN3183-S Chr7 25322297 25322297 0 0 Insertion 3 upstream_gene_variant HET FN3183-S Chr7 329531 329539 0 0 Deletion 8 downstream_gene_variant HET FN3183-S Chr8 12969605 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3183-S Chr8 13415155 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3183-S Chr8 14880124 Chr3 23141742 0 Translocation 0 FN3183-S Chr8 1508415 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3183-S Chr8 17027604 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3183-S Chr8 19831898 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g31980 trehalose-6-phosphate synthase, putative, expressed FN3183-S Chr8 2677405 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3183-S Chr8 3566878 Chr2 32335482 0 Translocation 0 FN3183-S Chr8 6761571 Chr7 9591943 0 Translocation 0 FN3183-S Chr9 11617926 Chr4 13242524 0 Translocation 0 FN3183-S Chr9 12750904 12750905 0 0 Deletion 1 INTERGENIC HET FN3183-S Chr9 12942446 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3183-S Chr9 13164593 13164597 0 0 Deletion 4 FRAME_SHIFT HET LOC_Os09g21740 armadillo/beta-catenin repeat family protein, putative, expressed FN3183-S Chr9 18019754 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g29630 NOL1/NOP2/sun family protein, putative, expressed FN3183-S Chr9 18019755 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g29630 NOL1/NOP2/sun family protein, putative, expressed FN3183-S Chr9 21007016 C-T 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN3183-S Chr9 21775034 T-A 0 0 Single Base Substitution 0 INTRON HET FN3183-S Chr9 4143463 Chr1 19711105 0 Translocation 0 FN3183-S Chr9 4146250 Chr1 20823537 0 Translocation 0 LOC_Os01g37300 retrotransposon protein, putative, unclassified FN3183-S Chr9 993439 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO