FN3184-S Chr1 1258583 1258584 0 0 Deletion 1 downstream_gene_variant HET FN3184-S Chr1 16317247 16317263 0 0 Deletion 16 INTRON HET FN3184-S Chr1 21523240 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3184-S Chr1 22549029 22549030 0 0 Deletion 1 downstream_gene_variant HET FN3184-S Chr1 22565374 22565374 0 0 Insertion 1 upstream_gene_variant HET FN3184-S Chr1 24287560 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3184-S Chr1 33576628 33576629 0 0 Deletion 1 upstream_gene_variant HET FN3184-S Chr1 37466141 37466142 0 0 Deletion 1 INTERGENIC HET FN3184-S Chr1 38815687 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3184-S Chr10 11452752 11452752 0 0 Insertion 1 intron_variant HET FN3184-S Chr10 3303955 3303956 0 0 Deletion 1 frameshift_variant HET LOC_Os10g06430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3184-S Chr10 5632133 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3184-S Chr10 5827314 C-G 0 0 Single Base Substitution 0 INTRON HOMO FN3184-S Chr10 7566553 7566556 0 0 Deletion 3 INTERGENIC HOMO FN3184-S Chr10 7665778 7665779 0 0 Deletion 1 frameshift_variant HET LOC_Os10g14120 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3184-S Chr10 8584699 8584700 0 0 Deletion 1 upstream_gene_variant HET FN3184-S Chr11 12111744 12111745 0 0 Deletion 1 intergenic_region HET FN3184-S Chr11 16553159 16553160 0 0 Deletion 1 upstream_gene_variant HET FN3184-S Chr11 19194191 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3184-S Chr11 19200649 Chr9 4333976 0 Translocation 0 FN3184-S Chr11 22525106 22525107 0 0 Deletion 1 intron_variant HET FN3184-S Chr11 26602329 26602330 0 0 Deletion 1 upstream_gene_variant HET FN3184-S Chr11 2696126 2696127 0 0 Deletion 1 INTERGENIC HOMO FN3184-S Chr11 5341180 Chr6 8931797 0 Translocation 0 FN3184-S Chr11 5800771 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3184-S Chr11 5800772 A-C 0 0 Single Base Substitution 0 INTRON HOMO FN3184-S Chr11 6190465 Chr3 27458651 0 Translocation 0 LOC_Os03g48260 expressed protein FN3184-S Chr11 6190465 Chr3 27458651 0 Translocation 0 LOC_Os11g11180 expressed protein FN3184-S Chr11 7649508 T-G 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN3184-S Chr12 12437261 Chr11 19693515 0 Translocation 0 FN3184-S Chr12 13484457 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3184-S Chr12 16521670 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3184-S Chr12 17081738 C-T 0 0 Single Base Substitution 0 INTRON HET FN3184-S Chr12 18739458 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3184-S Chr12 2254063 2842284 0 0 Inversion 588221 LOC_Os12g05120 receptor kinase, putative, expressed FN3184-S Chr12 2254070 2842289 0 0 Inversion 588219 LOC_Os12g05120 receptor kinase, putative, expressed FN3184-S Chr12 26545873 26545873 0 0 Insertion 2 upstream_gene_variant HET FN3184-S Chr12 26848488 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3184-S Chr12 8103151 8103153 0 0 Deletion 2 FRAME_SHIFT HOMO LOC_Os12g14250 retrotransposon protein, putative, unclassified, expressed FN3184-S Chr2 10040251 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g17450 retrotransposon protein, putative, unclassified, expressed FN3184-S Chr2 14441144 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3184-S Chr2 24448832 24448833 0 0 Deletion 1 upstream_gene_variant HET FN3184-S Chr2 26721325 26721325 0 0 Insertion 1 upstream_gene_variant HET FN3184-S Chr2 30621811 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3184-S Chr2 31064371 C-A 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN3184-S Chr2 33473734 A-T 0 0 Single Base Substitution 0 INTRON HET FN3184-S Chr3 10584614 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g18890 glycosyl transferase 8 domain containing protein, putative, expressed FN3184-S Chr3 12080085 12080089 0 0 Deletion 4 upstream_gene_variant HET FN3184-S Chr3 14584527 Chr2 24231589 0 Translocation 0 FN3184-S Chr3 1592530 1592531 0 0 Deletion 1 INTRON HOMO FN3184-S Chr3 18039688 18039689 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os03g31594 jmjC domain containing protein, expressed FN3184-S Chr3 35617386 35617393 0 0 Deletion 7 downstream_gene_variant HET FN3184-S Chr3 35895302 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3184-S Chr4 27952916 27952919 0 0 Deletion 3 INTRON HOMO FN3184-S Chr4 2872949 2873059 0 0 Deletion 110 upstream_gene_variant HET FN3184-S Chr4 29301085 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3184-S Chr4 32798209 32798220 0 0 Deletion 11 INTERGENIC HOMO FN3184-S Chr4 5452463 C-A 0 0 Single Base Substitution 0 STOP_GAINED HOMO LOC_Os04g10100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3184-S Chr4 5452464 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3184-S Chr4 5452465 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g10100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3184-S Chr4 5938724 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3184-S Chr4 6748884 Chr2 20318706 0 Translocation 0 FN3184-S Chr4 8963848 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3184-S Chr5 14281370 14281371 0 0 Deletion 1 intron_variant HET FN3184-S Chr5 1634633 1634633 0 0 Insertion 1 downstream_gene_variant HET FN3184-S Chr5 2487538 Chr1 28210986 0 Translocation 0 FN3184-S Chr5 3921096 3921099 0 0 Deletion 3 upstream_gene_variant HET FN3184-S Chr5 5485524 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3184-S Chr5 7088705 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3184-S Chr5 7898925 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3184-S Chr5 7898926 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3184-S Chr5 9228110 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3184-S Chr5 9576344 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g16810 retrotransposon protein, putative, unclassified FN3184-S Chr6 13770352 13770354 0 0 Deletion 2 upstream_gene_variant HET FN3184-S Chr6 17068259 17068269 0 0 Deletion 10 downstream_gene_variant HET FN3184-S Chr6 19534847 T-G 0 0 Single Base Substitution 0 INTRON HET FN3184-S Chr6 20502515 Chr1 11599807 0 Translocation 0 LOC_Os06g35170 expressed protein FN3184-S Chr6 27455075 Chr1 20917541 0 Translocation 0 FN3184-S Chr6 8536018 8536019 0 0 Deletion 1 upstream_gene_variant HET FN3184-S Chr7 11613061 11613103 0 0 Deletion 42 upstream_gene_variant HET FN3184-S Chr7 13781043 Chr3 17297489 0 Translocation 0 FN3184-S Chr7 18371983 Chr1 17686323 0 Translocation 0 FN3184-S Chr7 28838757 28838758 0 0 Deletion 1 INTERGENIC HOMO FN3184-S Chr7 8441495 8441496 0 0 Deletion 1 upstream_gene_variant HET FN3184-S Chr7 9647207 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g16470 transposon protein, putative, unclassified FN3184-S Chr8 11002301 11002318 0 0 Deletion 17 downstream_gene_variant HET FN3184-S Chr8 15571103 15571115 0 0 Deletion 12 INTERGENIC HOMO FN3184-S Chr8 15934947 Chr7 6243110 0 Translocation 0 FN3184-S Chr8 16934911 16934912 0 0 Deletion 1 downstream_gene_variant HET FN3184-S Chr8 1984939 1984960 0 0 Deletion 21 upstream_gene_variant HET FN3184-S Chr8 21087357 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3184-S Chr8 25773353 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3184-S Chr8 25854258 G-A 0 0 Single Base Substitution 0 INTRON HET FN3184-S Chr8 4667316 Chr5 21188254 0 Translocation 0 FN3184-S Chr9 12770001 12785000 0 0 Deletion 14999 LOC_Os09g21170 glucosyltransferase, putative, expressed FN3184-S Chr9 12770001 12785000 0 0 Deletion 14999 LOC_Os09g21180 homeobox associated leucine zipper, putative, expressed FN3184-S Chr9 12770001 12785000 0 0 Deletion 14999 LOC_Os09g21210 beta-glucan-binding protein 4, putative, expressed FN3184-S Chr9 12793001 12815000 0 0 Deletion 21999 LOC_Os09g21220 hypothetical protein FN3184-S Chr9 12793001 12815000 0 0 Deletion 21999 LOC_Os09g21290 expressed protein FN3184-S Chr9 14332168 A-G 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN3184-S Chr9 16464619 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3184-S Chr9 16464624 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3184-S Chr9 16684001 16871000 0 0 Deletion 186999 LOC_Os09g27480 expressed protein FN3184-S Chr9 16684001 16871000 0 0 Deletion 186999 LOC_Os09g27490 expressed protein FN3184-S Chr9 16684001 16871000 0 0 Deletion 186999 LOC_Os09g27500 cytochrome P450, putative, expressed FN3184-S Chr9 16684001 16871000 0 0 Deletion 186999 LOC_Os09g27510 cytochrome P450, putative, expressed FN3184-S Chr9 16684001 16871000 0 0 Deletion 186999 LOC_Os09g27520 expressed protein FN3184-S Chr9 16684001 16871000 0 0 Deletion 186999 LOC_Os09g27530 expressed protein FN3184-S Chr9 16684001 16871000 0 0 Deletion 186999 LOC_Os09g27540 C2 domain containing protein, expressed FN3184-S Chr9 16684001 16871000 0 0 Deletion 186999 LOC_Os09g27550 expressed protein FN3184-S Chr9 16684001 16871000 0 0 Deletion 186999 LOC_Os09g27560 expressed protein FN3184-S Chr9 16684001 16871000 0 0 Deletion 186999 LOC_Os09g27570 OsFBA3 - F-box and FBA domain containing protein, expressed FN3184-S Chr9 16684001 16871000 0 0 Deletion 186999 LOC_Os09g27580 potassium transporter, putative, expressed FN3184-S Chr9 16684001 16871000 0 0 Deletion 186999 LOC_Os09g27590 expressed protein FN3184-S Chr9 16684001 16871000 0 0 Deletion 186999 LOC_Os09g27610 expressed protein FN3184-S Chr9 16684001 16871000 0 0 Deletion 186999 LOC_Os09g27620 PHD-finger domain containing protein, putative, expressed FN3184-S Chr9 16684001 16871000 0 0 Deletion 186999 LOC_Os09g27640 retrotransposon protein, putative, unclassified FN3184-S Chr9 16684001 16871000 0 0 Deletion 186999 LOC_Os09g27650 ZOS9-14 - C2H2 zinc finger protein, expressed FN3184-S Chr9 16684001 16871000 0 0 Deletion 186999 LOC_Os09g27660 OsFBO21 - F-box and other domain containing protein, expressed FN3184-S Chr9 16684001 16871000 0 0 Deletion 186999 LOC_Os09g27670 expressed protein FN3184-S Chr9 16684001 16871000 0 0 Deletion 186999 LOC_Os09g27680 expressed protein FN3184-S Chr9 16684001 16871000 0 0 Deletion 186999 LOC_Os09g27690 expressed protein FN3184-S Chr9 16684001 16871000 0 0 Deletion 186999 LOC_Os09g27700 microtubule associated protein, putative, expressed FN3184-S Chr9 16684001 16871000 0 0 Deletion 186999 LOC_Os09g27710 pollen allergen Cyn d 23, putative, expressed FN3184-S Chr9 16684001 16871000 0 0 Deletion 186999 LOC_Os09g27720 expressed protein FN3184-S Chr9 16684001 16871000 0 0 Deletion 186999 LOC_Os09g29950 OsPOP19 - Putative Prolyl Oligopeptidase homologue, expressed FN3184-S Chr9 17665515 17665517 0 0 Deletion 2 INTERGENIC HET FN3184-S Chr9 22026122 22026122 0 0 Insertion 1 upstream_gene_variant HET FN3184-S Chr9 8458486 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3184-S Chr9 8530264 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os09g14430 transposon protein, putative, CACTA, En/Spm sub-class, expressed