FN3189-S Chr1 2650176 2650342 0 0 Deletion 166 upstream_gene_variant HET FN3189-S Chr1 2979536 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3189-S Chr1 2979537 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3189-S Chr1 30337256 30337261 0 0 Deletion 5 INTERGENIC HET FN3189-S Chr1 34116879 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3189-S Chr1 36174770 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3189-S Chr1 36174772 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3189-S Chr1 9205803 G-A 0 0 Single Base Substitution 0 INTRON HET FN3189-S Chr10 12547619 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3189-S Chr10 15317609 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g29490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3189-S Chr10 15776444 Chr2 397595 0 Translocation 0 LOC_Os02g01720 transmembrane protein 120A, putative, expressed FN3189-S Chr10 17232278 Chr1 7861537 0 Translocation 0 FN3189-S Chr10 1902673 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3189-S Chr10 6068488 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3189-S Chr10 7431213 T-C 0 0 Single Base Substitution 0 INTRON HET FN3189-S Chr11 18646936 Chr2 19206812 0 Translocation 0 FN3189-S Chr11 21112606 21112606 0 0 Insertion 54 downstream_gene_variant HET FN3189-S Chr11 25644115 25644115 0 0 Insertion 72 upstream_gene_variant HET FN3189-S Chr12 18408539 18408541 0 0 Deletion 2 upstream_gene_variant HET FN3189-S Chr2 10716617 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g18410 salt stress root protein RS1, putative, expressed FN3189-S Chr2 11929320 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g20260 retrotransposon protein, putative, unclassified, expressed FN3189-S Chr2 16470778 16842047 0 0 Inversion 371269 FN3189-S Chr2 16843860 17016145 0 0 Inversion 172285 FN3189-S Chr2 17388022 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3189-S Chr2 25212454 25212455 0 0 Deletion 1 INTRON HET FN3189-S Chr2 25235836 A-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3189-S Chr2 25236969 G-C 0 0 Single Base Substitution 0 INTRON HET FN3189-S Chr2 26868785 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3189-S Chr2 32366711 32366711 0 0 Insertion 2 INTERGENIC HET FN3189-S Chr2 7831460 7831461 0 0 Deletion 1 intergenic_region HET FN3189-S Chr3 11563539 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3189-S Chr3 31639821 31639822 0 0 Deletion 1 upstream_gene_variant HET FN3189-S Chr3 9119815 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3189-S Chr4 10735771 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g19290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3189-S Chr4 1407453 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3189-S Chr4 17264077 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3189-S Chr4 18720358 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3189-S Chr4 20854182 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g34440 ubiquitin interaction motif-containing protein, putative, expressed FN3189-S Chr4 23642474 23642483 0 0 Deletion 9 CODON_DELETION HET LOC_Os04g39680 anthranilate phosphoribosyltransferase, putative, expressed FN3189-S Chr4 31708405 31708405 0 0 Insertion 23 downstream_gene_variant HET FN3189-S Chr4 33021712 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3189-S Chr4 35416362 G-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os04g59540 phosphatidylinositol-4-phosphate 5-Kinase, putative, expressed FN3189-S Chr4 5224277 5224277 0 0 Insertion 30 upstream_gene_variant HET FN3189-S Chr4 5413691 5413691 0 0 Insertion 2 intergenic_region HET FN3189-S Chr4 6115387 C-A 0 0 Single Base Substitution 0 INTRON HET FN3189-S Chr4 7013653 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3189-S Chr4 9825672 9825673 0 0 Deletion 1 upstream_gene_variant HET FN3189-S Chr5 1329961 1329961 0 0 Insertion 1 frameshift_variant HET LOC_Os05g03280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3189-S Chr5 22821569 C-G 0 0 Single Base Substitution 0 INTRON HET FN3189-S Chr5 25274872 G-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3189-S Chr5 7284220 7284222 0 0 Deletion 2 FRAME_SHIFT HET LOC_Os05g12680 retrotransposon protein, putative, unclassified, expressed FN3189-S Chr5 8994340 8994340 0 0 Insertion 2 downstream_gene_variant HET FN3189-S Chr5 9893210 9893211 0 0 Deletion 1 downstream_gene_variant HET FN3189-S Chr6 11965492 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3189-S Chr6 18792766 18792767 0 0 Deletion 1 frameshift_variant HET LOC_Os06g32280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3189-S Chr6 19720883 G-A 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN3189-S Chr6 23042479 Chr3 3707180 0 Translocation 0 LOC_Os03g07270 glycine-rich cell wall protein, putative, expressed FN3189-S Chr6 575232 575232 0 0 Insertion 2 INTERGENIC HET FN3189-S Chr6 6166128 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3189-S Chr6 7574936 7574943 0 0 Deletion 7 INTERGENIC HET FN3189-S Chr6 7796111 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g14020 expressed protein FN3189-S Chr7 10071021 10071030 0 0 Deletion 9 inframe_deletion HET LOC_Os07g17140 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3189-S Chr7 1340872 1340872 0 0 Insertion 1 upstream_gene_variant HET FN3189-S Chr7 14459662 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3189-S Chr7 14952552 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3189-S Chr7 26357669 T-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3189-S Chr7 3202351 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3189-S Chr7 3952271 Chr1 2817593 0 Translocation 0 FN3189-S Chr7 5755553 T-A 0 0 Single Base Substitution 0 INTRON HET FN3189-S Chr7 7508983 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3189-S Chr7 9953194 9953195 0 0 Deletion 1 upstream_gene_variant HET FN3189-S Chr8 11254001 11371000 0 0 Deletion 116999 LOC_Os08g18870 expressed protein FN3189-S Chr8 11254001 11371000 0 0 Deletion 116999 LOC_Os08g18880 WD domain, G-beta repeat domain containing protein, expressed FN3189-S Chr8 11254001 11371000 0 0 Deletion 116999 LOC_Os08g18890 expressed protein FN3189-S Chr8 11254001 11371000 0 0 Deletion 116999 LOC_Os08g18894 expressed protein FN3189-S Chr8 11254001 11371000 0 0 Deletion 116999 LOC_Os08g18900 retrotransposon protein, putative, unclassified, expressed FN3189-S Chr8 11254001 11371000 0 0 Deletion 116999 LOC_Os08g18910 expressed protein FN3189-S Chr8 11254001 11371000 0 0 Deletion 116999 LOC_Os08g18920 protein kinase domain containing protein, expressed FN3189-S Chr8 11254001 11371000 0 0 Deletion 116999 LOC_Os08g18930 expressed protein FN3189-S Chr8 11254001 11371000 0 0 Deletion 116999 LOC_Os08g18940 transposon protein, putative, unclassified, expressed FN3189-S Chr8 11254001 11371000 0 0 Deletion 116999 LOC_Os08g18950 transposon protein, putative, unclassified, expressed FN3189-S Chr8 11254001 11371000 0 0 Deletion 116999 LOC_Os08g18960 transposon protein, putative, unclassified, expressed FN3189-S Chr8 11254001 11371000 0 0 Deletion 116999 LOC_Os08g18970 pectate lyase family protein, expressed FN3189-S Chr8 11254001 11371000 0 0 Deletion 116999 LOC_Os08g18974 expressed protein FN3189-S Chr8 11254001 11371000 0 0 Deletion 116999 LOC_Os08g18980 expressed protein FN3189-S Chr8 11254001 11371000 0 0 Deletion 116999 LOC_Os08g18990 retrotransposon protein, putative, unclassified, expressed FN3189-S Chr8 11254001 11371000 0 0 Deletion 116999 LOC_Os08g19000 retrotransposon protein, putative, unclassified FN3189-S Chr8 11254001 11371000 0 0 Deletion 116999 LOC_Os08g19010 retrotransposon, putative, centromere-specific FN3189-S Chr8 11254001 11371000 0 0 Deletion 116999 LOC_Os08g19020 expressed protein FN3189-S Chr8 11254001 11371000 0 0 Deletion 116999 LOC_Os08g19030 retrotransposon protein, putative, unclassified, expressed FN3189-S Chr8 11254001 11371000 0 0 Deletion 116999 LOC_Os08g19040 retrotransposon protein, putative, unclassified, expressed FN3189-S Chr8 11254001 11371000 0 0 Deletion 116999 LOC_Os08g19050 expressed protein FN3189-S Chr8 11254001 11371000 0 0 Deletion 116999 LOC_Os08g20967 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3189-S Chr8 12039186 12039186 0 0 Insertion 2 upstream_gene_variant HET FN3189-S Chr8 12349758 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3189-S Chr8 1299262 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3189-S Chr8 17056951 17056952 0 0 Deletion 1 splice_acceptor_variant&intron_variant HET LOC_Os08g27990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3189-S Chr8 7903182 7903215 0 0 Deletion 33 downstream_gene_variant HET FN3189-S Chr8 8606012 8606012 0 0 Insertion 1 upstream_gene_variant HET FN3189-S Chr8 9916059 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3189-S Chr9 15389468 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3189-S Chr9 15393609 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3189-S Chr9 17819066 17819072 0 0 Deletion 6 INTERGENIC HET FN3189-S Chr9 5578828 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g10240 retrotransposon protein, putative, unclassified, expressed FN3189-S Chr9 6149788 C-T 0 0 Single Base Substitution 0 INTERGENIC HET